AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024690.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024690.01.T01 MTR_5g014560 85.650 223 25 1 1 223 1 216 3.90e-128 365
MsG0580024690.01.T01 MTR_5g014520 69.565 230 49 3 1 210 1 229 2.39e-84 255
MsG0580024690.01.T01 MTR_6g047570 40.664 241 102 11 1 210 1 231 3.56e-28 110
MsG0580024690.01.T01 MTR_6g047550 38.618 246 104 11 1 205 1 240 6.54e-28 107
MsG0580024690.01.T01 MTR_0246s0020 57.843 102 38 2 106 207 171 267 8.48e-25 101
MsG0580024690.01.T01 MTR_0246s0020 57.843 102 38 2 106 207 171 267 9.55e-25 101
MsG0580024690.01.T01 MTR_5g014550 87.719 57 7 0 167 223 53 109 2.28e-24 96.7
MsG0580024690.01.T01 MTR_4g066380 39.545 220 94 13 1 193 1 208 6.80e-24 98.2
MsG0580024690.01.T01 MTR_5g014600 52.128 94 45 0 109 202 120 213 1.78e-23 97.4
MsG0580024690.01.T01 MTR_4g098035 37.395 238 90 11 4 197 9 231 9.43e-23 95.5
MsG0580024690.01.T01 MTR_2g010450 44.361 133 67 4 86 217 131 257 2.31e-22 94.4
MsG0580024690.01.T01 MTR_4g092700 61.842 76 28 1 137 211 157 232 4.21e-22 93.6
MsG0580024690.01.T01 MTR_0250s0040 55.682 88 39 0 120 207 70 157 9.73e-22 91.3
MsG0580024690.01.T01 MTR_0246s0050 39.806 206 78 9 33 197 10 210 9.83e-22 92.4
MsG0580024690.01.T01 MTR_0011s0260 61.538 78 30 0 133 210 178 255 1.97e-21 92.0
MsG0580024690.01.T01 MTR_0011s0210 61.538 78 30 0 133 210 178 255 4.56e-21 90.9
MsG0580024690.01.T01 MTR_4g097950 46.281 121 49 4 105 211 24 142 1.17e-20 88.2
MsG0580024690.01.T01 MTR_4g067010 37.441 211 109 10 1 195 1 204 1.45e-20 89.4
MsG0580024690.01.T01 MTR_4g097920 54.054 74 34 0 137 210 139 212 3.85e-20 87.8
MsG0580024690.01.T01 MTR_4g097920 54.054 74 34 0 137 210 154 227 4.60e-20 87.8
MsG0580024690.01.T01 MTR_4g097940 54.054 74 34 0 137 210 154 227 6.28e-20 87.4
MsG0580024690.01.T01 MTR_4g066460 34.247 219 111 8 1 194 1 211 7.24e-20 87.4
MsG0580024690.01.T01 MTR_2g104490 42.276 123 60 3 96 210 89 208 2.51e-19 85.5
MsG0580024690.01.T01 MTR_2g104490 42.276 123 60 3 96 210 89 208 3.03e-19 85.5
MsG0580024690.01.T01 MTR_5g014640 40.000 135 68 5 65 193 82 209 3.72e-19 85.1
MsG0580024690.01.T01 MTR_2g104550 44.340 106 53 2 96 195 90 195 2.81e-17 80.1
MsG0580024690.01.T01 MTR_4g009540 46.667 90 45 1 118 207 135 221 5.73e-17 79.0
MsG0580024690.01.T01 MTR_2g104560 46.835 79 40 1 133 209 49 127 5.91e-17 77.8
MsG0580024690.01.T01 MTR_4g009540 46.667 90 45 1 118 207 135 221 9.28e-17 78.6
MsG0580024690.01.T01 MTR_2g104590 49.315 73 37 0 138 210 69 141 6.59e-16 74.7
MsG0580024690.01.T01 MTR_8g009020 53.425 73 33 1 137 209 142 213 3.04e-15 74.3
MsG0580024690.01.T01 MTR_7g080780 54.098 61 28 0 137 197 164 224 4.07e-15 73.9
MsG0580024690.01.T01 MTR_7g080780 54.098 61 28 0 137 197 151 211 4.21e-15 73.9
MsG0580024690.01.T01 MTR_4g009110 46.429 84 42 1 122 205 161 241 3.93e-14 71.2
MsG0580024690.01.T01 MTR_8g069740 46.575 73 39 0 138 210 112 184 3.22e-13 67.8
MsG0580024690.01.T01 MTR_8g009010 54.237 59 27 0 135 193 131 189 4.37e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024690.01.T01 AT4G37850 56.044 91 35 1 125 210 134 224 5.49e-25 101
MsG0580024690.01.T01 AT4G37850 56.044 91 35 1 125 210 134 224 5.49e-25 101
MsG0580024690.01.T01 AT2G22750 56.667 90 34 1 126 210 109 198 4.19e-20 87.8
MsG0580024690.01.T01 AT2G22750 56.667 90 34 1 126 210 109 198 4.44e-20 87.4
MsG0580024690.01.T01 AT2G22750 56.667 90 34 1 126 210 137 226 4.99e-20 87.8
MsG0580024690.01.T01 AT2G22750 56.667 90 34 1 126 210 133 222 5.34e-20 87.8
MsG0580024690.01.T01 AT2G22750 56.667 90 34 1 126 210 137 226 5.41e-20 87.8
MsG0580024690.01.T01 AT2G22770 50.000 76 36 1 137 210 131 206 9.92e-17 78.6
MsG0580024690.01.T01 AT2G22760 45.745 94 46 3 121 212 104 194 1.63e-16 77.4
MsG0580024690.01.T01 AT2G22760 45.745 94 46 3 121 212 104 194 1.86e-16 77.4
MsG0580024690.01.T01 AT2G46510 38.462 78 47 1 117 193 373 450 7.38e-12 65.1

Find 38 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTCCTTTGGAAACAAATT+TGG 0.137791 5:+8244989 MsG0580024690.01.T01:CDS
CATAATATCAATAGTTATTA+TGG 0.146036 5:+8244628 MsG0580024690.01.T01:exon
CTAATACTCTCAAACGTTCT+TGG 0.224167 5:-8246007 None:intergenic
ACTCTAGCTGCTCTTATTCC+TGG 0.272370 5:+8245236 MsG0580024690.01.T01:CDS
TACAAGTCATGGAGTGATTA+TGG 0.283092 5:+8246092 MsG0580024690.01.T01:CDS
CAATTAGCTGGTTATCTGAT+TGG 0.321783 5:+8244681 MsG0580024690.01.T01:CDS
TGCTTAACAATTTCAGAGAT+TGG 0.328743 5:-8244586 None:intergenic
AAGTTATTCTTCTTGTCCTT+TGG 0.370526 5:+8244977 MsG0580024690.01.T01:CDS
ATGGAGTGATTATGGTTCTA+AGG 0.381575 5:+8246100 MsG0580024690.01.T01:CDS
AATTAGCTGGTTATCTGATT+GGG 0.417900 5:+8244682 MsG0580024690.01.T01:CDS
TCTGCTGACTCAACTGGCTC+AGG 0.429942 5:-8248320 None:intergenic
CTGCTGACTCAACTGGCTCA+GGG 0.431310 5:-8248319 None:intergenic
GGAGATTCTGCTGACTCAAC+TGG 0.433082 5:-8248326 None:intergenic
CAATGCGAACAAAACTTGTA+TGG 0.442147 5:+8244870 MsG0580024690.01.T01:CDS
CTCTGAAATTGTTAAGCAAA+AGG 0.444951 5:+8244591 MsG0580024690.01.T01:five_prime_UTR
ATTTGAAGAAAATGAAATAG+AGG 0.453578 5:+8244830 MsG0580024690.01.T01:CDS
CGCAGCTAAGTTACAAGTCA+TGG 0.456135 5:+8246081 MsG0580024690.01.T01:CDS
CTTTCCAAATTTGTTTCCAA+AGG 0.463702 5:-8244993 None:intergenic
CAAACGCATCATCAATTAGC+TGG 0.468053 5:+8244669 MsG0580024690.01.T01:CDS
TCTTTCTCTCCGCCATGATA+CGG 0.492627 5:-8245184 None:intergenic
TCTTATTCCTGGCTTGAAGA+AGG 0.494711 5:+8245247 MsG0580024690.01.T01:CDS
CAAGAAGAATAACTTTCAAA+AGG 0.505322 5:-8244969 None:intergenic
ACGGACAAGACTTCAGTCAT+AGG 0.509641 5:+8245957 MsG0580024690.01.T01:CDS
CAACTACCTCAAAATCAAGA+AGG 0.526009 5:+8245077 MsG0580024690.01.T01:CDS
CAACATACCTTCTTCAAGCC+AGG 0.529759 5:-8245254 None:intergenic
GGTAGTTGTGTTTGTGACAA+TGG 0.540621 5:-8245062 None:intergenic
GCTGACTCAACTGGCTCAGG+GGG 0.568010 5:-8248317 None:intergenic
TGATCATCAAGACCGTATCA+TGG 0.571054 5:+8245172 MsG0580024690.01.T01:CDS
TTTGAAGAAAATGAAATAGA+GGG 0.571396 5:+8244831 MsG0580024690.01.T01:CDS
TAACTTTCAAAAGGTAACAA+TGG 0.572810 5:-8244960 None:intergenic
CAGAAAGACAAGGGACTAAG+AGG 0.576978 5:+8245138 MsG0580024690.01.T01:CDS
AACTACCTCAAAATCAAGAA+GGG 0.608663 5:+8245078 MsG0580024690.01.T01:CDS
TGCTGACTCAACTGGCTCAG+GGG 0.611175 5:-8248318 None:intergenic
TGGAACAACTTCATGCAAAG+TGG 0.630460 5:-8245042 None:intergenic
GTCAGCAGATTCTGTTGACG+TGG 0.639516 5:+8248364 MsG0580024690.01.T01:CDS
GCTGACGTCGCGTGCCACGT+AGG 0.683651 5:-8248347 None:intergenic
TCATCAAGACCGTATCATGG+CGG 0.756942 5:+8245175 MsG0580024690.01.T01:CDS
AGTCAGCAGAATCTCCTACG+TGG 0.803786 5:+8248333 MsG0580024690.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTAAAAAAAAAAATTTAC+AGG - Chr5:8248263-8248282 None:intergenic 10.0%
!! TAAAGTCTATTTAATTAAAT+AGG - Chr5:8246945-8246964 None:intergenic 10.0%
!! TCTAAAAAAAAAAATTTACA+GGG - Chr5:8248262-8248281 None:intergenic 10.0%
!! TTATTTAATAACACATATAT+TGG - Chr5:8246789-8246808 None:intergenic 10.0%
!!! AGAAATAATTTTAATATGTT+TGG + Chr5:8245602-8245621 MsG0580024690.01.T01:intron 10.0%
!!! ATATTTTTTTTTTATAAGCA+AGG + Chr5:8247602-8247621 MsG0580024690.01.T01:intron 10.0%
!!! TTATTAATTTTTGCATTTTT+GGG + Chr5:8245556-8245575 MsG0580024690.01.T01:intron 10.0%
!! AAGATTGCATTAATAAAATT+TGG - Chr5:8246712-8246731 None:intergenic 15.0%
!! CATAATATCAATAGTTATTA+TGG + Chr5:8244628-8244647 MsG0580024690.01.T01:exon 15.0%
!! CTAAAAAAAAAAATTTACAG+GGG - Chr5:8248261-8248280 None:intergenic 15.0%
!! TAAAAAAAAAAATTTACAGG+GGG - Chr5:8248260-8248279 None:intergenic 15.0%
!! TTATATATAAAACGTTGAAT+AGG + Chr5:8246874-8246893 MsG0580024690.01.T01:intron 15.0%
!!! GTTATTAATTTTTGCATTTT+TGG + Chr5:8245555-8245574 MsG0580024690.01.T01:intron 15.0%
!!! TGTAAAATAGGTTTTTAAAT+AGG - Chr5:8246649-8246668 None:intergenic 15.0%
!!! TTGTATGAATGATTTTTATA+CGG + Chr5:8244777-8244796 MsG0580024690.01.T01:intron 15.0%
!! AAATTATCCTAATCAACTAT+TGG + Chr5:8247294-8247313 MsG0580024690.01.T01:intron 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + Chr5:8247391-8247410 MsG0580024690.01.T01:intron 20.0%
!! ATATTTAGTAGTAGGTTTAT+AGG - Chr5:8246688-8246707 None:intergenic 20.0%
!! ATTGTCCTTAATAAATGTTA+TGG + Chr5:8247132-8247151 MsG0580024690.01.T01:intron 20.0%
!! ATTTGAAGAAAATGAAATAG+AGG + Chr5:8244830-8244849 MsG0580024690.01.T01:CDS 20.0%
!! CTTTACCATAACATTTATTA+AGG - Chr5:8247140-8247159 None:intergenic 20.0%
!! GAGAGAATAATAAATAGTTA+AGG + Chr5:8247783-8247802 MsG0580024690.01.T01:intron 20.0%
!! TAAAAAACAATCTAGAAGTT+AGG + Chr5:8245392-8245411 MsG0580024690.01.T01:intron 20.0%
!! TAATGTTTCATTTGTATTGT+AGG + Chr5:8247521-8247540 MsG0580024690.01.T01:intron 20.0%
!! TGACATACTTCAAAAATTAT+AGG + Chr5:8246541-8246560 MsG0580024690.01.T01:intron 20.0%
!! TTTGAAGAAAATGAAATAGA+GGG + Chr5:8244831-8244850 MsG0580024690.01.T01:CDS 20.0%
!!! ACATGTAATTAGTTTTGTAT+AGG + Chr5:8247076-8247095 MsG0580024690.01.T01:intron 20.0%
!!! ACTAGTTAGCTATTAATTTT+AGG + Chr5:8245884-8245903 MsG0580024690.01.T01:intron 20.0%
!!! CAACACATAATATAATTTTG+TGG - Chr5:8247704-8247723 None:intergenic 20.0%
!!! GAATCTTCATTTTAAAATGA+CGG - Chr5:8248287-8248306 None:intergenic 20.0%
!!! GAGTTTTTTGCTTAATAAAT+TGG + Chr5:8246214-8246233 MsG0580024690.01.T01:intron 20.0%
!!! TAAAAACCTATTTTACACTA+AGG + Chr5:8246652-8246671 MsG0580024690.01.T01:intron 20.0%
!!! TATAATTTTTGAAGTATGTC+AGG - Chr5:8246542-8246561 None:intergenic 20.0%
!!! TCTATACAACTTAGAAATTT+TGG - Chr5:8247964-8247983 None:intergenic 20.0%
!!! TGTATATAGTATTGATTGAA+GGG + Chr5:8247357-8247376 MsG0580024690.01.T01:intron 20.0%
!!! TTATTTAAGATAGATCGATT+TGG + Chr5:8245460-8245479 MsG0580024690.01.T01:intron 20.0%
! AAACAAACCAATAGTTGATT+AGG - Chr5:8247304-8247323 None:intergenic 25.0%
! AAGATGCAATAGTTAATATG+TGG - Chr5:8245736-8245755 None:intergenic 25.0%
! AAGTTGTATAGAAATACCTT+AGG + Chr5:8247972-8247991 MsG0580024690.01.T01:intron 25.0%
! AATTTGGCATATTTAGTAGT+AGG - Chr5:8246696-8246715 None:intergenic 25.0%
! ACTAAAAATACAGAAAGACA+AGG + Chr5:8245128-8245147 MsG0580024690.01.T01:CDS 25.0%
! ACTAGATTCTTCATATGATT+TGG - Chr5:8246812-8246831 None:intergenic 25.0%
! AGGAAATTAGGGAAAAAAAT+GGG + Chr5:8246485-8246504 MsG0580024690.01.T01:intron 25.0%
! CAAGAAGAATAACTTTCAAA+AGG - Chr5:8244972-8244991 None:intergenic 25.0%
! CTAAAAATACAGAAAGACAA+GGG + Chr5:8245129-8245148 MsG0580024690.01.T01:CDS 25.0%
! CTATATGCATATTGTGATAA+TGG - Chr5:8245536-8245555 None:intergenic 25.0%
! CTCCATCTATTTCAAATATT+TGG + Chr5:8245823-8245842 MsG0580024690.01.T01:intron 25.0%
! GATATATGTCGAAACATAAA+AGG - Chr5:8245422-8245441 None:intergenic 25.0%
! TAACTTTCAAAAGGTAACAA+TGG - Chr5:8244963-8244982 None:intergenic 25.0%
! TGTGTATATATAGGGTTAAT+AGG + Chr5:8248197-8248216 MsG0580024690.01.T01:intron 25.0%
! TTGTAAATCAAATCAACAGA+CGG + Chr5:8245938-8245957 MsG0580024690.01.T01:intron 25.0%
!! CACATAATATAATTTTGTGG+TGG - Chr5:8247701-8247720 None:intergenic 25.0%
!! TATTCTAACCTTTTAGACAT+GGG + Chr5:8245491-8245510 MsG0580024690.01.T01:intron 25.0%
!! TGAGAGTTAAAACCTTTTAA+GGG + Chr5:8248003-8248022 MsG0580024690.01.T01:intron 25.0%
!! TTATTCTAACCTTTTAGACA+TGG + Chr5:8245490-8245509 MsG0580024690.01.T01:intron 25.0%
!! TTCAAAATGAATGTCGTTTA+AGG + Chr5:8247208-8247227 MsG0580024690.01.T01:intron 25.0%
!! TTGAGAGTTAAAACCTTTTA+AGG + Chr5:8248002-8248021 MsG0580024690.01.T01:intron 25.0%
!!! AAACGACATTCATTTTGAAA+CGG - Chr5:8247207-8247226 None:intergenic 25.0%
!!! GTGTATATAGTATTGATTGA+AGG + Chr5:8247356-8247375 MsG0580024690.01.T01:intron 25.0%
!!! TTTTTTATAAGCAAGGAATG+TGG + Chr5:8247609-8247628 MsG0580024690.01.T01:intron 25.0%
AAAAGTCGTCTATATTACAG+GGG - Chr5:8248230-8248249 None:intergenic 30.0%
AAACGACATACAATTTGAGA+CGG + Chr5:8247887-8247906 MsG0580024690.01.T01:intron 30.0%
AACTACCTCAAAATCAAGAA+GGG + Chr5:8245078-8245097 MsG0580024690.01.T01:CDS 30.0%
AAGTTATTCTTCTTGTCCTT+TGG + Chr5:8244977-8244996 MsG0580024690.01.T01:CDS 30.0%
AATTAGCTGGTTATCTGATT+GGG + Chr5:8244682-8244701 MsG0580024690.01.T01:CDS 30.0%
CAAAAGTCGTCTATATTACA+GGG - Chr5:8248231-8248250 None:intergenic 30.0%
GAGGAAATTAGGGAAAAAAA+TGG + Chr5:8246484-8246503 MsG0580024690.01.T01:intron 30.0%
TACACATACCGAATAAAGTT+TGG - Chr5:8245583-8245602 None:intergenic 30.0%
TGCTTAACAATTTCAGAGAT+TGG - Chr5:8244589-8244608 None:intergenic 30.0%
TGTAGTGATGAGAATTCATT+TGG - Chr5:8245789-8245808 None:intergenic 30.0%
TGTGTGTGTGTGTATATATA+GGG + Chr5:8248189-8248208 MsG0580024690.01.T01:intron 30.0%
TGTTCGTTGTAGTAAATTGT+TGG + Chr5:8246454-8246473 MsG0580024690.01.T01:intron 30.0%
TTGACATAACAATCATTGCT+CGG + Chr5:8246303-8246322 MsG0580024690.01.T01:intron 30.0%
! AATTACATTTCCTCTAGAGA+TGG - Chr5:8247572-8247591 None:intergenic 30.0%
! ACTTCATCATGCCTTTAAAA+AGG - Chr5:8246619-8246638 None:intergenic 30.0%
! ATAGAAATACCTTAGGTTGT+CGG + Chr5:8247979-8247998 MsG0580024690.01.T01:intron 30.0%
! ATATAATTTTGTGGTGGCAT+AGG - Chr5:8247695-8247714 None:intergenic 30.0%
! ATTACATTTCCTCTAGAGAT+GGG - Chr5:8247571-8247590 None:intergenic 30.0%
! CACGTTTTTGTCCAAAATTT+TGG - Chr5:8246165-8246184 None:intergenic 30.0%
! CGCCAAATATTTGAAATAGA+TGG - Chr5:8245828-8245847 None:intergenic 30.0%
! CTTTCCAAATTTGTTTCCAA+AGG - Chr5:8244996-8245015 None:intergenic 30.0%
! GCAAAAAACTCTTTTGCTTT+TGG - Chr5:8246205-8246224 None:intergenic 30.0%
! TTGTCCTTTGGAAACAAATT+TGG + Chr5:8244989-8245008 MsG0580024690.01.T01:CDS 30.0%
!! AAACTATATTCGAGTTGGTT+CGG - Chr5:8248040-8248059 None:intergenic 30.0%
!! AGCAAGTATTTTTCAACAAG+AGG + Chr5:8244920-8244939 MsG0580024690.01.T01:CDS 30.0%
!! AGTTAGGCTTTAAATAGGTT+AGG + Chr5:8247007-8247026 MsG0580024690.01.T01:intron 30.0%
!! CTCTGAAATTGTTAAGCAAA+AGG + Chr5:8244591-8244610 MsG0580024690.01.T01:five_prime_UTR 30.0%
!! GTCTTAAAGGTTAGTCTATT+GGG + Chr5:8247936-8247955 MsG0580024690.01.T01:intron 30.0%
!! TATTGTGATAATGGTCCAAA+CGG - Chr5:8245527-8245546 None:intergenic 30.0%
!! TCTTAAAGGTTAGTCTATTG+GGG + Chr5:8247937-8247956 MsG0580024690.01.T01:intron 30.0%
!!! TTAGAGCTACGTGTTTTTTT+GGG - Chr5:8245375-8245394 None:intergenic 30.0%
!!! TTTAGAGCTACGTGTTTTTT+TGG - Chr5:8245376-8245395 None:intergenic 30.0%
!!! TTTTGAAGTATGTCAGGTTT+AGG - Chr5:8246536-8246555 None:intergenic 30.0%
!!! TTTTGGGACCAAACTTTATT+CGG + Chr5:8245572-8245591 MsG0580024690.01.T01:intron 30.0%
AAAAGCCTATTAAGCACATC+AGG - Chr5:8246904-8246923 None:intergenic 35.0%
AAAGTCGTCTATATTACAGG+GGG - Chr5:8248229-8248248 None:intergenic 35.0%
AACTTGAGCTATGCATAGTT+CGG + Chr5:8248115-8248134 MsG0580024690.01.T01:intron 35.0%
ACAGAGGGAGTAAATACTTA+AGG + Chr5:8247476-8247495 MsG0580024690.01.T01:intron 35.0%
ACTAATTACATGTCCTCTAG+AGG - Chr5:8247069-8247088 None:intergenic 35.0%
AGGAAAACAGATGTATGCTA+AGG + Chr5:8247914-8247933 MsG0580024690.01.T01:intron 35.0%
CAACTACCTCAAAATCAAGA+AGG + Chr5:8245077-8245096 MsG0580024690.01.T01:CDS 35.0%
CAATGCGAACAAAACTTGTA+TGG + Chr5:8244870-8244889 MsG0580024690.01.T01:CDS 35.0%
CAATTAGCTGGTTATCTGAT+TGG + Chr5:8244681-8244700 MsG0580024690.01.T01:CDS 35.0%
CCAAAAGTCGTCTATATTAC+AGG - Chr5:8248232-8248251 None:intergenic 35.0%
CTAATACTCTCAAACGTTCT+TGG - Chr5:8246010-8246029 None:intergenic 35.0%
CTTAAATGTGAGCCTATGAT+GGG - Chr5:8246585-8246604 None:intergenic 35.0%
GAACCAACTCGAATATAGTT+TGG + Chr5:8248039-8248058 MsG0580024690.01.T01:intron 35.0%
GACAATTAACTCGTTGAGTT+TGG + Chr5:8248072-8248091 MsG0580024690.01.T01:intron 35.0%
GAGCAATGATTGTTATGTCA+AGG - Chr5:8246304-8246323 None:intergenic 35.0%
GATGTATGCTAAGGTCTTAA+AGG + Chr5:8247923-8247942 MsG0580024690.01.T01:intron 35.0%
GTCACTTGACTGATATATGA+AGG - Chr5:8244720-8244739 None:intergenic 35.0%
GTGTGTGTGTGTGTATATAT+AGG + Chr5:8248188-8248207 MsG0580024690.01.T01:intron 35.0%
GTTCATTGTCATCCCTTAAA+AGG - Chr5:8248018-8248037 None:intergenic 35.0%
GTTCCAAACTATATTCGAGT+TGG - Chr5:8248045-8248064 None:intergenic 35.0%
GTTGTAGTAAATTGTTGGAG+TGG + Chr5:8246459-8246478 MsG0580024690.01.T01:intron 35.0%
TACAAGTCATGGAGTGATTA+TGG + Chr5:8246092-8246111 MsG0580024690.01.T01:CDS 35.0%
TCTCATTCATGGATTCTTCA+AGG + Chr5:8245293-8245312 MsG0580024690.01.T01:intron 35.0%
TGACATAACAATCATTGCTC+GGG + Chr5:8246304-8246323 MsG0580024690.01.T01:intron 35.0%
TGACTAAAACGACACTCATT+TGG + Chr5:8247451-8247470 MsG0580024690.01.T01:intron 35.0%
TGCTATTAACAACAGAGAGA+TGG - Chr5:8246256-8246275 None:intergenic 35.0%
TTTGACCTATTACCCATCAT+AGG + Chr5:8246570-8246589 MsG0580024690.01.T01:intron 35.0%
! AATGACCCTTCTTGATTTTG+AGG - Chr5:8245086-8245105 None:intergenic 35.0%
! ATGGAGTGATTATGGTTCTA+AGG + Chr5:8246100-8246119 MsG0580024690.01.T01:CDS 35.0%
! CCTGTAATATAGACGACTTT+TGG + Chr5:8248229-8248248 MsG0580024690.01.T01:intron 35.0%
!! CTTAAAGGTTAGTCTATTGG+GGG + Chr5:8247938-8247957 MsG0580024690.01.T01:intron 35.0%
!! GGTCTTAAAGGTTAGTCTAT+TGG + Chr5:8247935-8247954 MsG0580024690.01.T01:intron 35.0%
AGCCTTCTTATCAAACAAGG+CGG + Chr5:8246981-8247000 MsG0580024690.01.T01:intron 40.0%
CAAACGCATCATCAATTAGC+TGG + Chr5:8244669-8244688 MsG0580024690.01.T01:CDS 40.0%
CCATCATAGGCTCACATTTA+AGG + Chr5:8246583-8246602 MsG0580024690.01.T01:intron 40.0%
CCTTAAATGTGAGCCTATGA+TGG - Chr5:8246586-8246605 None:intergenic 40.0%
GAATGTGGACAAACATCAAG+CGG + Chr5:8247624-8247643 MsG0580024690.01.T01:intron 40.0%
GACACTCATTTGGAAACAGA+GGG + Chr5:8247461-8247480 MsG0580024690.01.T01:intron 40.0%
GCTAGGCCTTAGTGTAAAAT+AGG - Chr5:8246661-8246680 None:intergenic 40.0%
GGATCTCATTGTCTCATTCA+TGG + Chr5:8245282-8245301 MsG0580024690.01.T01:intron 40.0%
GGTAGTTGTGTTTGTGACAA+TGG - Chr5:8245065-8245084 None:intergenic 40.0%
GTAAATTGTTGGAGTGGAAG+AGG + Chr5:8246465-8246484 MsG0580024690.01.T01:intron 40.0%
GTTTCGATCCCATGTCTAAA+AGG - Chr5:8245502-8245521 None:intergenic 40.0%
TAGCTCAAGTTCAGCTCATT+TGG - Chr5:8248106-8248125 None:intergenic 40.0%
TGATCATCAAGACCGTATCA+TGG + Chr5:8245172-8245191 MsG0580024690.01.T01:CDS 40.0%
TGGAACAACTTCATGCAAAG+TGG - Chr5:8245045-8245064 None:intergenic 40.0%
TGGACAAAAACGTGCTCATA+AGG + Chr5:8246171-8246190 MsG0580024690.01.T01:intron 40.0%
TGGAGTGGAAGAGGAAATTA+GGG + Chr5:8246474-8246493 MsG0580024690.01.T01:intron 40.0%
TTGGAGTGGAAGAGGAAATT+AGG + Chr5:8246473-8246492 MsG0580024690.01.T01:intron 40.0%
! AATTACATGTCCTCTAGAGG+TGG - Chr5:8247066-8247085 None:intergenic 40.0%
! AATTTTGTGGTGGCATAGGA+TGG - Chr5:8247691-8247710 None:intergenic 40.0%
! ATAGGCTCACATTTAAGGTG+TGG + Chr5:8246588-8246607 MsG0580024690.01.T01:intron 40.0%
! ATTACATGTCCTCTAGAGGT+GGG - Chr5:8247065-8247084 None:intergenic 40.0%
! CCTAGCCTTCTTATCAAACA+AGG + Chr5:8246978-8246997 MsG0580024690.01.T01:intron 40.0%
! CCTTGTTTGATAAGAAGGCT+AGG - Chr5:8246981-8247000 None:intergenic 40.0%
! GACATACAATTTGAGACGGA+GGG + Chr5:8247891-8247910 MsG0580024690.01.T01:intron 40.0%
! GTGTGGTCTGACCTTTTTAA+AGG + Chr5:8246605-8246624 MsG0580024690.01.T01:intron 40.0%
! TCTTATTCCTGGCTTGAAGA+AGG + Chr5:8245247-8245266 MsG0580024690.01.T01:CDS 40.0%
! TGAAGAAGGTATGTTGCTCT+CGG + Chr5:8245261-8245280 MsG0580024690.01.T01:intron 40.0%
!! AACTCTTTTGCTTTTGGCAC+TGG - Chr5:8246199-8246218 None:intergenic 40.0%
!! GGTCGAGTTAGGCTTTAAAT+AGG + Chr5:8247002-8247021 MsG0580024690.01.T01:intron 40.0%
!! GTAGGTTTATAGGTGTTGCT+AGG - Chr5:8246678-8246697 None:intergenic 40.0%
AACTCTCAACCGACAACCTA+AGG - Chr5:8247991-8248010 None:intergenic 45.0%
AATAGCAGCGTCCTAGCTAT+TGG + Chr5:8246269-8246288 MsG0580024690.01.T01:intron 45.0%
ACGGACAAGACTTCAGTCAT+AGG + Chr5:8245957-8245976 MsG0580024690.01.T01:CDS 45.0%
ACTAGGTCAAGTACCAGACA+AGG - Chr5:8247548-8247567 None:intergenic 45.0%
ACTCTAGCTGCTCTTATTCC+TGG + Chr5:8245236-8245255 MsG0580024690.01.T01:CDS 45.0%
ATAGCAGCGTCCTAGCTATT+GGG + Chr5:8246270-8246289 MsG0580024690.01.T01:intron 45.0%
ATGGGATCGAAACTACCGTT+TGG + Chr5:8245509-8245528 MsG0580024690.01.T01:intron 45.0%
CAACATACCTTCTTCAAGCC+AGG - Chr5:8245257-8245276 None:intergenic 45.0%
CAGAAAGACAAGGGACTAAG+AGG + Chr5:8245138-8245157 MsG0580024690.01.T01:CDS 45.0%
CGACACTCATTTGGAAACAG+AGG + Chr5:8247460-8247479 MsG0580024690.01.T01:intron 45.0%
CGCAGCTAAGTTACAAGTCA+TGG + Chr5:8246081-8246100 MsG0580024690.01.T01:CDS 45.0%
CTAGGTCAAGTACCAGACAA+GGG - Chr5:8247547-8247566 None:intergenic 45.0%
GGATAGAATCCCCAATAGCT+AGG - Chr5:8246283-8246302 None:intergenic 45.0%
GTATCATCGACATCCCAACT+AGG + Chr5:8247646-8247665 MsG0580024690.01.T01:intron 45.0%
GTCGACCTGATGTGCTTAAT+AGG + Chr5:8246896-8246915 MsG0580024690.01.T01:intron 45.0%
TAATGAAGATCTCCTCCACG+TGG + Chr5:8246136-8246155 MsG0580024690.01.T01:intron 45.0%
TCATCAAGACCGTATCATGG+CGG + Chr5:8245175-8245194 MsG0580024690.01.T01:CDS 45.0%
TCTTTCTCTCCGCCATGATA+CGG - Chr5:8245187-8245206 None:intergenic 45.0%
TTGTATTGTAGGCCCTTGTC+TGG + Chr5:8247532-8247551 MsG0580024690.01.T01:intron 45.0%
! ATACAATTTGAGACGGAGGG+AGG + Chr5:8247894-8247913 MsG0580024690.01.T01:intron 45.0%
! CCACGTGGATGCCAAAATTT+TGG + Chr5:8246151-8246170 MsG0580024690.01.T01:intron 45.0%
! CGACATACAATTTGAGACGG+AGG + Chr5:8247890-8247909 MsG0580024690.01.T01:intron 45.0%
! TATGCATAGTTCGGCTCGTT+TGG + Chr5:8248124-8248143 MsG0580024690.01.T01:intron 45.0%
! TTTCCTCTAGAGATGGGACT+AGG - Chr5:8247565-8247584 None:intergenic 45.0%
!! AAATTTTGGCATCCACGTGG+AGG - Chr5:8246151-8246170 None:intergenic 45.0%
!! CCAAAATTTTGGCATCCACG+TGG - Chr5:8246154-8246173 None:intergenic 45.0%
!! GACCGCCTTGTTTGATAAGA+AGG - Chr5:8246986-8247005 None:intergenic 45.0%
!! GGAAAAAAATGGGCTAGACC+GGG + Chr5:8246495-8246514 MsG0580024690.01.T01:intron 45.0%
!! GGGAAAAAAATGGGCTAGAC+CGG + Chr5:8246494-8246513 MsG0580024690.01.T01:intron 45.0%
!! GTGAGCCTATGATGGGTAAT+AGG - Chr5:8246578-8246597 None:intergenic 45.0%
!!! TTTATATAAATATTTTTGTT+CGG + Chr5:8245337-8245356 MsG0580024690.01.T01:intron 5.0%
AGTCAGCAGAATCTCCTACG+TGG + Chr5:8248333-8248352 MsG0580024690.01.T01:CDS 50.0%
CATCGACATCCCAACTAGGT+TGG + Chr5:8247650-8247669 MsG0580024690.01.T01:intron 50.0%
GTCAGCAGATTCTGTTGACG+TGG + Chr5:8248364-8248383 MsG0580024690.01.T01:CDS 50.0%
TAGCAGCGTCCTAGCTATTG+GGG + Chr5:8246271-8246290 MsG0580024690.01.T01:intron 50.0%
TCAAACAAGGCGGTCGAGTT+AGG + Chr5:8246991-8247010 MsG0580024690.01.T01:intron 50.0%
TGACCTAGTCCCATCTCTAG+AGG + Chr5:8247559-8247578 MsG0580024690.01.T01:intron 50.0%
TTTGTGGTGGCATAGGATGG+AGG - Chr5:8247688-8247707 None:intergenic 50.0%
!! GGAGATTCTGCTGACTCAAC+TGG - Chr5:8248329-8248348 None:intergenic 50.0%
AGACCGGGTCGAACTTTGCA+AGG + Chr5:8246510-8246529 MsG0580024690.01.T01:intron 55.0%
AGGCCTTGCAAAGTTCGACC+CGG - Chr5:8246516-8246535 None:intergenic 55.0%
CAGGTCAAGCCGTCCAACAA+GGG - Chr5:8247040-8247059 None:intergenic 55.0%
GTTAGGTGCCAAGCCCTTGT+TGG + Chr5:8247024-8247043 MsG0580024690.01.T01:intron 55.0%
!! CATAGGATGGAGGTGTCTCG+GGG - Chr5:8247678-8247697 None:intergenic 55.0%
!! CTGCTGACTCAACTGGCTCA+GGG - Chr5:8248322-8248341 None:intergenic 55.0%
!! GCATAGGATGGAGGTGTCTC+GGG - Chr5:8247679-8247698 None:intergenic 55.0%
!! GGCATAGGATGGAGGTGTCT+CGG - Chr5:8247680-8247699 None:intergenic 55.0%
!! TCTGCTGACTCAACTGGCTC+AGG - Chr5:8248323-8248342 None:intergenic 55.0%
!! TGCTGACTCAACTGGCTCAG+GGG - Chr5:8248321-8248340 None:intergenic 55.0%
CAAGCCGTCCAACAAGGGCT+TGG - Chr5:8247035-8247054 None:intergenic 60.0%
CCAGGTCAAGCCGTCCAACA+AGG - Chr5:8247041-8247060 None:intergenic 60.0%
CCTTGTTGGACGGCTTGACC+TGG + Chr5:8247038-8247057 MsG0580024690.01.T01:intron 60.0%
GGTGCCAAGCCCTTGTTGGA+CGG + Chr5:8247028-8247047 MsG0580024690.01.T01:intron 60.0%
TGACCTGGTCCCACCTCTAG+AGG + Chr5:8247053-8247072 MsG0580024690.01.T01:intron 60.0%
! CTCGGGGTGCCAACCTAGTT+GGG - Chr5:8247662-8247681 None:intergenic 60.0%
! GCTGACTCAACTGGCTCAGG+GGG - Chr5:8248320-8248339 None:intergenic 60.0%
! TCTCGGGGTGCCAACCTAGT+TGG - Chr5:8247663-8247682 None:intergenic 60.0%
! TGTCCTCTAGAGGTGGGACC+AGG - Chr5:8247059-8247078 None:intergenic 60.0%
GCTGACGTCGCGTGCCACGT+AGG - Chr5:8248350-8248369 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 8244570 8248394 8244570 ID=MsG0580024690.01;Name=MsG0580024690.01
Chr5 mRNA 8244570 8248394 8244570 ID=MsG0580024690.01.T01;Parent=MsG0580024690.01;Name=MsG0580024690.01.T01;_AED=0.44;_eAED=0.51;_QI=77|0.33|0.25|1|1|1|4|0|250
Chr5 exon 8244570 8244703 8244570 ID=MsG0580024690.01.T01:exon:26263;Parent=MsG0580024690.01.T01
Chr5 exon 8244828 8245268 8244828 ID=MsG0580024690.01.T01:exon:26264;Parent=MsG0580024690.01.T01
Chr5 exon 8245957 8246128 8245957 ID=MsG0580024690.01.T01:exon:26265;Parent=MsG0580024690.01.T01
Chr5 exon 8248312 8248394 8248312 ID=MsG0580024690.01.T01:exon:26266;Parent=MsG0580024690.01.T01
Chr5 five_prime_UTR 8244570 8244646 8244570 ID=MsG0580024690.01.T01:five_prime_utr;Parent=MsG0580024690.01.T01
Chr5 CDS 8244647 8244703 8244647 ID=MsG0580024690.01.T01:cds;Parent=MsG0580024690.01.T01
Chr5 CDS 8244828 8245268 8244828 ID=MsG0580024690.01.T01:cds;Parent=MsG0580024690.01.T01
Chr5 CDS 8245957 8246128 8245957 ID=MsG0580024690.01.T01:cds;Parent=MsG0580024690.01.T01
Chr5 CDS 8248312 8248394 8248312 ID=MsG0580024690.01.T01:cds;Parent=MsG0580024690.01.T01
Gene Sequence

>MsG0580024690.01.T01

ATGGAAAAATTAAACACTTCTTCAAACGCATCATCAATTAGCTGGTTATCTGATTGGCTATTTGAAGAAAATGAAATAGAGGGTTGTAATTTGTTTCAACAATGCGAACAAAACTTGTATGGTGAAGAAGAGTTTCTTTCACATGACATAGCAAGTATTTTTCAACAAGAGGAAAATTTGCAACATCAACCATTGTTACCTTTTGAAAGTTATTCTTCTTGTCCTTTGGAAACAAATTTGGAAAGAGACAACAAGAAGTTGAAAACGAACACCACTTTGCATGAAGTTGTTCCATTGTCACAAACACAACTACCTCAAAATCAAGAAGGGTCATTGCAAAAGCAAAACGTTGTTGAAACTAAAAATACAGAAAGACAAGGGACTAAGAGGTCTGTTGCTTATGATCATCAAGACCGTATCATGGCGGAGAGAAAGAGAAGAGAAAAACTCAGTCAGTGCTTGATTACTCTAGCTGCTCTTATTCCTGGCTTGAAGAAGACGGACAAGACTTCAGTCATAGGAGATGCTATCAAGCATGTGAAAGAGCTCCAAGAACGTTTGAGAGTATTAGAAGAACAGAACAAGAATAGTCTTATTGAATCTGTAGTGACGCTTAACAAATCGCAGCTAAGTTACAAGTCATGGAGTGATTATGGTTCTAAGGCTGCTATTTTGCCCCCTGAGCCAGTTGAGTCAGCAGAATCTCCTACGTGGCACGCGACGTCAGCAGATTCTGTTGACGTGGCGCGCTGA

Protein sequence

>MsG0580024690.01.T01

MEKLNTSSNASSISWLSDWLFEENEIEGCNLFQQCEQNLYGEEEFLSHDIASIFQQEENLQHQPLLPFESYSSCPLETNLERDNKKLKTNTTLHEVVPLSQTQLPQNQEGSLQKQNVVETKNTERQGTKRSVAYDHQDRIMAERKRREKLSQCLITLAALIPGLKKTDKTSVIGDAIKHVKELQERLRVLEEQNKNSLIESVVTLNKSQLSYKSWSDYGSKAAILPPEPVESAESPTWHATSADSVDVAR*