AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005395.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005395.01.T03 MTR_1g098790 99.304 431 3 0 1 431 1 431 0.0 894
MsG0180005395.01.T03 MTR_2g007930 80.460 435 73 5 1 431 1 427 0.0 703
MsG0180005395.01.T03 MTR_2g020280 58.073 384 137 5 48 431 34 393 1.43e-157 451
MsG0180005395.01.T03 MTR_5g020580 53.636 440 171 11 1 431 1 416 1.83e-154 444
MsG0180005395.01.T03 MTR_8g077195 51.708 439 177 12 1 431 1 412 9.39e-146 421
MsG0180005395.01.T03 MTR_1g022370 48.690 458 172 9 1 431 1 422 1.09e-145 421
MsG0180005395.01.T03 MTR_1g088960 50.801 437 174 10 1 431 1 402 7.11e-145 419
MsG0180005395.01.T03 MTR_2g020280 57.547 318 111 5 114 431 1 294 2.96e-125 365
MsG0180005395.01.T03 MTR_2g076200 47.781 383 149 6 50 431 39 371 1.16e-119 353
MsG0180005395.01.T03 MTR_2g076210 43.377 385 162 10 51 431 35 367 7.63e-96 292
MsG0180005395.01.T03 MTR_8g077675 42.431 436 198 15 1 424 1 395 2.11e-93 287
MsG0180005395.01.T03 MTR_8g077620 39.492 433 202 17 1 422 1 384 2.71e-90 279
MsG0180005395.01.T03 MTR_8g077650 38.601 386 156 16 48 423 14 328 1.48e-62 205
MsG0180005395.01.T03 MTR_1g023800 50.649 154 61 4 1 147 1 146 7.87e-44 150
MsG0180005395.01.T03 MTR_8g077640 38.783 263 122 6 1 235 46 297 9.43e-42 152
MsG0180005395.01.T03 MTR_8g077640 45.098 102 41 3 322 421 295 383 1.87e-16 81.3
MsG0180005395.01.T03 MTR_0210s0010 40.404 99 52 2 95 193 8 99 4.97e-14 68.6
MsG0180005395.01.T01 MTR_1g098790 99.304 431 3 0 1 431 1 431 0.0 894
MsG0180005395.01.T01 MTR_2g007930 80.460 435 73 5 1 431 1 427 0.0 703
MsG0180005395.01.T01 MTR_2g020280 58.073 384 137 5 48 431 34 393 1.43e-157 451
MsG0180005395.01.T01 MTR_5g020580 53.636 440 171 11 1 431 1 416 1.83e-154 444
MsG0180005395.01.T01 MTR_8g077195 51.708 439 177 12 1 431 1 412 9.39e-146 421
MsG0180005395.01.T01 MTR_1g022370 48.690 458 172 9 1 431 1 422 1.09e-145 421
MsG0180005395.01.T01 MTR_1g088960 50.801 437 174 10 1 431 1 402 7.11e-145 419
MsG0180005395.01.T01 MTR_2g020280 57.547 318 111 5 114 431 1 294 2.96e-125 365
MsG0180005395.01.T01 MTR_2g076200 47.781 383 149 6 50 431 39 371 1.16e-119 353
MsG0180005395.01.T01 MTR_2g076210 43.377 385 162 10 51 431 35 367 7.63e-96 292
MsG0180005395.01.T01 MTR_8g077675 42.431 436 198 15 1 424 1 395 2.11e-93 287
MsG0180005395.01.T01 MTR_8g077620 39.492 433 202 17 1 422 1 384 2.71e-90 279
MsG0180005395.01.T01 MTR_8g077650 38.601 386 156 16 48 423 14 328 1.48e-62 205
MsG0180005395.01.T01 MTR_1g023800 50.649 154 61 4 1 147 1 146 7.87e-44 150
MsG0180005395.01.T01 MTR_8g077640 38.783 263 122 6 1 235 46 297 9.43e-42 152
MsG0180005395.01.T01 MTR_8g077640 45.098 102 41 3 322 421 295 383 1.87e-16 81.3
MsG0180005395.01.T01 MTR_0210s0010 40.404 99 52 2 95 193 8 99 4.97e-14 68.6
MsG0180005395.01.T02 MTR_1g098790 99.304 431 3 0 1 431 1 431 0.0 894
MsG0180005395.01.T02 MTR_2g007930 80.460 435 73 5 1 431 1 427 0.0 703
MsG0180005395.01.T02 MTR_2g020280 58.073 384 137 5 48 431 34 393 1.43e-157 451
MsG0180005395.01.T02 MTR_5g020580 53.636 440 171 11 1 431 1 416 1.83e-154 444
MsG0180005395.01.T02 MTR_8g077195 51.708 439 177 12 1 431 1 412 9.39e-146 421
MsG0180005395.01.T02 MTR_1g022370 48.690 458 172 9 1 431 1 422 1.09e-145 421
MsG0180005395.01.T02 MTR_1g088960 50.801 437 174 10 1 431 1 402 7.11e-145 419
MsG0180005395.01.T02 MTR_2g020280 57.547 318 111 5 114 431 1 294 2.96e-125 365
MsG0180005395.01.T02 MTR_2g076200 47.781 383 149 6 50 431 39 371 1.16e-119 353
MsG0180005395.01.T02 MTR_2g076210 43.377 385 162 10 51 431 35 367 7.63e-96 292
MsG0180005395.01.T02 MTR_8g077675 42.431 436 198 15 1 424 1 395 2.11e-93 287
MsG0180005395.01.T02 MTR_8g077620 39.492 433 202 17 1 422 1 384 2.71e-90 279
MsG0180005395.01.T02 MTR_8g077650 38.601 386 156 16 48 423 14 328 1.48e-62 205
MsG0180005395.01.T02 MTR_1g023800 50.649 154 61 4 1 147 1 146 7.87e-44 150
MsG0180005395.01.T02 MTR_8g077640 38.783 263 122 6 1 235 46 297 9.43e-42 152
MsG0180005395.01.T02 MTR_8g077640 45.098 102 41 3 322 421 295 383 1.87e-16 81.3
MsG0180005395.01.T02 MTR_0210s0010 40.404 99 52 2 95 193 8 99 4.97e-14 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005395.01.T03 AT1G76900 70.330 455 111 9 1 431 1 455 0.0 610
MsG0180005395.01.T03 AT1G76900 70.330 455 111 9 1 431 1 455 0.0 610
MsG0180005395.01.T03 AT1G76900 70.330 455 111 9 1 431 1 455 0.0 610
MsG0180005395.01.T03 AT1G43640 68.027 441 119 6 1 431 1 429 0.0 600
MsG0180005395.01.T03 AT1G25280 70.179 446 117 7 1 431 1 445 0.0 596
MsG0180005395.01.T03 AT1G43640 70.053 374 94 4 65 431 1 363 0.0 536
MsG0180005395.01.T03 AT2G47900 53.596 431 175 4 1 431 1 406 2.56e-165 471
MsG0180005395.01.T03 AT2G47900 53.596 431 175 4 1 431 1 406 2.56e-165 471
MsG0180005395.01.T03 AT2G47900 53.472 432 175 5 1 431 1 407 8.64e-164 467
MsG0180005395.01.T03 AT2G18280 53.288 441 148 12 1 431 1 393 3.66e-150 432
MsG0180005395.01.T03 AT2G18280 53.288 441 148 12 1 431 1 393 3.66e-150 432
MsG0180005395.01.T03 AT1G47270 55.181 386 135 5 48 431 39 388 4.33e-142 411
MsG0180005395.01.T03 AT1G47270 55.181 386 135 5 48 431 64 413 8.42e-142 411
MsG0180005395.01.T03 AT1G47270 55.181 386 135 5 48 431 63 412 1.02e-141 411
MsG0180005395.01.T03 AT5G18680 50.777 386 156 7 49 431 35 389 1.51e-130 382
MsG0180005395.01.T03 AT3G06380 51.706 381 149 9 53 431 33 380 5.18e-127 372
MsG0180005395.01.T03 AT1G25280 69.776 268 71 6 173 431 1 267 3.58e-123 358
MsG0180005395.01.T03 AT1G25280 69.776 268 71 6 173 431 1 267 3.58e-123 358
MsG0180005395.01.T03 AT1G53320 47.520 383 156 5 50 431 41 379 2.29e-118 350
MsG0180005395.01.T03 AT5G18680 51.227 326 126 6 108 431 3 297 3.57e-106 316
MsG0180005395.01.T03 AT3G06380 51.420 317 120 8 116 431 5 288 4.15e-99 298
MsG0180005395.01.T03 AT1G61940 55.814 86 38 0 56 141 1 86 2.78e-28 112
MsG0180005395.01.T03 AT1G61940 59.375 64 26 0 56 119 1 64 8.74e-20 88.6
MsG0180005395.01.T01 AT1G76900 70.330 455 111 9 1 431 1 455 0.0 610
MsG0180005395.01.T01 AT1G76900 70.330 455 111 9 1 431 1 455 0.0 610
MsG0180005395.01.T01 AT1G76900 70.330 455 111 9 1 431 1 455 0.0 610
MsG0180005395.01.T01 AT1G43640 68.027 441 119 6 1 431 1 429 0.0 600
MsG0180005395.01.T01 AT1G25280 70.179 446 117 7 1 431 1 445 0.0 596
MsG0180005395.01.T01 AT1G43640 70.053 374 94 4 65 431 1 363 0.0 536
MsG0180005395.01.T01 AT2G47900 53.596 431 175 4 1 431 1 406 2.56e-165 471
MsG0180005395.01.T01 AT2G47900 53.596 431 175 4 1 431 1 406 2.56e-165 471
MsG0180005395.01.T01 AT2G47900 53.472 432 175 5 1 431 1 407 8.64e-164 467
MsG0180005395.01.T01 AT2G18280 53.288 441 148 12 1 431 1 393 3.66e-150 432
MsG0180005395.01.T01 AT2G18280 53.288 441 148 12 1 431 1 393 3.66e-150 432
MsG0180005395.01.T01 AT1G47270 55.181 386 135 5 48 431 39 388 4.33e-142 411
MsG0180005395.01.T01 AT1G47270 55.181 386 135 5 48 431 64 413 8.42e-142 411
MsG0180005395.01.T01 AT1G47270 55.181 386 135 5 48 431 63 412 1.02e-141 411
MsG0180005395.01.T01 AT5G18680 50.777 386 156 7 49 431 35 389 1.51e-130 382
MsG0180005395.01.T01 AT3G06380 51.706 381 149 9 53 431 33 380 5.18e-127 372
MsG0180005395.01.T01 AT1G25280 69.776 268 71 6 173 431 1 267 3.58e-123 358
MsG0180005395.01.T01 AT1G25280 69.776 268 71 6 173 431 1 267 3.58e-123 358
MsG0180005395.01.T01 AT1G53320 47.520 383 156 5 50 431 41 379 2.29e-118 350
MsG0180005395.01.T01 AT5G18680 51.227 326 126 6 108 431 3 297 3.57e-106 316
MsG0180005395.01.T01 AT3G06380 51.420 317 120 8 116 431 5 288 4.15e-99 298
MsG0180005395.01.T01 AT1G61940 55.814 86 38 0 56 141 1 86 2.78e-28 112
MsG0180005395.01.T01 AT1G61940 59.375 64 26 0 56 119 1 64 8.74e-20 88.6
MsG0180005395.01.T02 AT1G76900 70.330 455 111 9 1 431 1 455 0.0 610
MsG0180005395.01.T02 AT1G76900 70.330 455 111 9 1 431 1 455 0.0 610
MsG0180005395.01.T02 AT1G76900 70.330 455 111 9 1 431 1 455 0.0 610
MsG0180005395.01.T02 AT1G43640 68.027 441 119 6 1 431 1 429 0.0 600
MsG0180005395.01.T02 AT1G25280 70.179 446 117 7 1 431 1 445 0.0 596
MsG0180005395.01.T02 AT1G43640 70.053 374 94 4 65 431 1 363 0.0 536
MsG0180005395.01.T02 AT2G47900 53.596 431 175 4 1 431 1 406 2.56e-165 471
MsG0180005395.01.T02 AT2G47900 53.596 431 175 4 1 431 1 406 2.56e-165 471
MsG0180005395.01.T02 AT2G47900 53.472 432 175 5 1 431 1 407 8.64e-164 467
MsG0180005395.01.T02 AT2G18280 53.288 441 148 12 1 431 1 393 3.66e-150 432
MsG0180005395.01.T02 AT2G18280 53.288 441 148 12 1 431 1 393 3.66e-150 432
MsG0180005395.01.T02 AT1G47270 55.181 386 135 5 48 431 39 388 4.33e-142 411
MsG0180005395.01.T02 AT1G47270 55.181 386 135 5 48 431 64 413 8.42e-142 411
MsG0180005395.01.T02 AT1G47270 55.181 386 135 5 48 431 63 412 1.02e-141 411
MsG0180005395.01.T02 AT5G18680 50.777 386 156 7 49 431 35 389 1.51e-130 382
MsG0180005395.01.T02 AT3G06380 51.706 381 149 9 53 431 33 380 5.18e-127 372
MsG0180005395.01.T02 AT1G25280 69.776 268 71 6 173 431 1 267 3.58e-123 358
MsG0180005395.01.T02 AT1G25280 69.776 268 71 6 173 431 1 267 3.58e-123 358
MsG0180005395.01.T02 AT1G53320 47.520 383 156 5 50 431 41 379 2.29e-118 350
MsG0180005395.01.T02 AT5G18680 51.227 326 126 6 108 431 3 297 3.57e-106 316
MsG0180005395.01.T02 AT3G06380 51.420 317 120 8 116 431 5 288 4.15e-99 298
MsG0180005395.01.T02 AT1G61940 55.814 86 38 0 56 141 1 86 2.78e-28 112
MsG0180005395.01.T02 AT1G61940 59.375 64 26 0 56 119 1 64 8.74e-20 88.6

Find 14 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATTTGCTAAAACATAAAA+AGG 0.249597 1:-91295957 MsG0180005395.01.T01:intron
TGTTGATGTAGGAATCTTCT+AGG 0.308592 1:-91295898 MsG0180005395.01.T01:intron
CCAAACTTCAATGATAAATA+AGG 0.326259 1:+91295771 None:intergenic
AAATCTGGGTCTGGAAGTTT+CGG 0.334850 1:+91296107 None:intergenic
CCTTATTTATCATTGAAGTT+TGG 0.367982 1:-91295771 MsG0180005395.01.T01:five_prime_UTR
AGATGAAGAGAAAGAGGAAC+AGG 0.377865 1:+91296219 None:intergenic
TCATTGAAGTTTGGTGTTTG+AGG 0.387907 1:-91295762 MsG0180005395.01.T01:intron
GAGAAAGAGGAACAGGAGTT+AGG 0.404272 1:+91296226 None:intergenic
TAGATTAGATGAAGAGAAAG+AGG 0.431184 1:+91296213 None:intergenic
TTCTTATATTTGTGTTGTAG+TGG 0.445123 1:-91295872 MsG0180005395.01.T01:intron
GATAAGACTTTCAAACATCA+TGG 0.465894 1:-91296255 MsG0180005395.01.T02:intron
GAGAAGTAGAGAGAGAAAGT+TGG 0.500215 1:-91296337 MsG0180005395.01.T02:five_prime_UTR
AAAAGAAAGAAACAAGAGGT+AGG 0.515304 1:+91296160 None:intergenic
CAAACAAATGAAATGAAACA+CGG 0.669947 1:+91296373 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGTGAAATTTATATTT+GGG - Chr1:91292792-91292811 MsG0180005395.01.T01:CDS 10.0%
!!! TGTTTTTTTTTTAGATAAAA+AGG - Chr1:91292882-91292901 MsG0180005395.01.T01:CDS 10.0%
!! AAAATTAAACAACTTATCAA+AGG + Chr1:91293258-91293277 None:intergenic 15.0%
!! TAAATCATAACTTACATAAA+GGG + Chr1:91296278-91296297 None:intergenic 15.0%
!! TTAAATCATAACTTACATAA+AGG + Chr1:91296279-91296298 None:intergenic 15.0%
!!! GATTTTGTGAAATTTATATT+TGG - Chr1:91292791-91292810 MsG0180005395.01.T01:CDS 15.0%
!! AAAAGATGTTAAAAAACAAG+TGG - Chr1:91294031-91294050 MsG0180005395.01.T01:intron 20.0%
!! AAATCAGAAGAAAAAAAATC+TGG + Chr1:91292723-91292742 None:intergenic 20.0%
!! AAATCATAACTTACATAAAG+GGG + Chr1:91296277-91296296 None:intergenic 20.0%
!! AAGCACATAAATGAAAAATT+AGG + Chr1:91294260-91294279 None:intergenic 20.0%
!! AATCAGAAGAAAAAAAATCT+GGG + Chr1:91292722-91292741 None:intergenic 20.0%
!! ATCAAATCAAATAGTGTATT+AGG + Chr1:91294411-91294430 None:intergenic 20.0%
!! CGTTAAATTCATATTTATGA+GGG + Chr1:91294751-91294770 None:intergenic 20.0%
!! TACTTTACAATTTAACTATG+AGG + Chr1:91296184-91296203 None:intergenic 20.0%
!! TCGTTAAATTCATATTTATG+AGG + Chr1:91294752-91294771 None:intergenic 20.0%
!! TGTATCATAAATTATGAACT+TGG + Chr1:91295384-91295403 None:intergenic 20.0%
!! TTAAAAAAGAAAGAAACAAG+AGG + Chr1:91292659-91292678 None:intergenic 20.0%
!! TTAAATAGTGAGATCTAATT+GGG - Chr1:91295190-91295209 MsG0180005395.01.T01:five_prime_UTR 20.0%
!! TTATAATATTTAGTGTGCAA+CGG + Chr1:91294223-91294242 None:intergenic 20.0%
!! TTTAAATAGTGAGATCTAAT+TGG - Chr1:91295189-91295208 MsG0180005395.01.T01:five_prime_UTR 20.0%
!!! AGAAACTTTTCATTTTCATA+TGG + Chr1:91294650-91294669 None:intergenic 20.0%
!!! ATATTATAAAATTTAGAGCC+TGG - Chr1:91294234-91294253 MsG0180005395.01.T01:intron 20.0%
!!! ATTTAACGAATTTTTAGATC+TGG - Chr1:91294763-91294782 MsG0180005395.01.T01:intron 20.0%
!!! ATTTTTCGTAAAGTAATTCT+TGG + Chr1:91295282-91295301 None:intergenic 20.0%
!!! CAGTTTTTTTACAGTTTTTT+TGG - Chr1:91292821-91292840 MsG0180005395.01.T01:CDS 20.0%
!!! GTATTTGCTAAAACATAAAA+AGG - Chr1:91292855-91292874 MsG0180005395.01.T01:CDS 20.0%
!!! TGAATTTAATTTGTATGCAT+TGG - Chr1:91295080-91295099 MsG0180005395.01.T01:CDS 20.0%
!!! TTTTTCGTAAAGTAATTCTT+GGG + Chr1:91295281-91295300 None:intergenic 20.0%
! AATCATAACTTACATAAAGG+GGG + Chr1:91296276-91296295 None:intergenic 25.0%
! ACAAGATAAAAAAGGACATT+GGG + Chr1:91296227-91296246 None:intergenic 25.0%
! ATTGTCTTGTAAAAAGTTGA+TGG - Chr1:91295042-91295061 MsG0180005395.01.T01:CDS 25.0%
! CAAACAAATGAAATGAAACA+CGG + Chr1:91292442-91292461 None:intergenic 25.0%
! CCAAACTTCAATGATAAATA+AGG + Chr1:91293044-91293063 None:intergenic 25.0%
! TTCTTATATTTGTGTTGTAG+TGG - Chr1:91292940-91292959 MsG0180005395.01.T01:CDS 25.0%
!! CCTTATTTATCATTGAAGTT+TGG - Chr1:91293041-91293060 MsG0180005395.01.T01:CDS 25.0%
!! TGTGTAAAATTGGTTTACAT+TGG - Chr1:91295217-91295236 MsG0180005395.01.T01:five_prime_UTR 25.0%
!!! AATTGTTTCTGACAAAAGTA+TGG - Chr1:91293350-91293369 MsG0180005395.01.T01:CDS 25.0%
!!! AATTTTTAGATCTGGTTTGT+CGG - Chr1:91294771-91294790 MsG0180005395.01.T01:intron 25.0%
!!! ATATGGACTCTATTTGTTTT+AGG - Chr1:91294589-91294608 MsG0180005395.01.T01:intron 25.0%
!!! TGATCATTAAGTATTGAAGA+TGG - Chr1:91293492-91293511 MsG0180005395.01.T01:intron 25.0%
!!! TGTCAGAAACAATTTTAAGA+TGG + Chr1:91293344-91293363 None:intergenic 25.0%
!!! TTTAAACTGCTTTAGCTTTT+AGG - Chr1:91293376-91293395 MsG0180005395.01.T01:CDS 25.0%
AAAAGAAAGAAACAAGAGGT+AGG + Chr1:91292655-91292674 None:intergenic 30.0%
AAAGAGAAAGATGAATTGCT+TGG + Chr1:91294535-91294554 None:intergenic 30.0%
AAGAAAATTAGACCTGAAAG+AGG + Chr1:91295357-91295376 None:intergenic 30.0%
ACTGAAGAATAATCTTGTCA+TGG + Chr1:91295958-91295977 None:intergenic 30.0%
AGTAGCATTCAATATCTGTT+TGG - Chr1:91296375-91296394 MsG0180005395.01.T02:five_prime_UTR 30.0%
AGTTAGATTGACTATTGAGA+AGG - Chr1:91293299-91293318 MsG0180005395.01.T01:CDS 30.0%
ATCTTACACTCTCTACTTTA+AGG - Chr1:91293079-91293098 MsG0180005395.01.T01:CDS 30.0%
ATTTGATTCCTGTTCTCATA+AGG - Chr1:91293165-91293184 MsG0180005395.01.T01:CDS 30.0%
CACAGAGTATGTTATATCAA+TGG - Chr1:91294884-91294903 MsG0180005395.01.T01:CDS 30.0%
CACATGCACAAATATCTAAT+TGG + Chr1:91295147-91295166 None:intergenic 30.0%
CATAAATGAAAAATTAGGCC+AGG + Chr1:91294255-91294274 None:intergenic 30.0%
CATCCTATGAATTCCTAAAA+TGG + Chr1:91296135-91296154 None:intergenic 30.0%
CTTGTGAATGTTTCTCATAA+GGG - Chr1:91293127-91293146 MsG0180005395.01.T01:CDS 30.0%
GACAAGATAAAAAAGGACAT+TGG + Chr1:91296228-91296247 None:intergenic 30.0%
GACAAGATTATTCTTCAGTT+CGG - Chr1:91295959-91295978 MsG0180005395.01.T01:five_prime_UTR 30.0%
GATAAGACTTTCAAACATCA+TGG - Chr1:91292557-91292576 MsG0180005395.01.T01:three_prime_UTR 30.0%
TAGATATTTGTGCATGTGTA+GGG - Chr1:91295149-91295168 MsG0180005395.01.T01:CDS 30.0%
TAGATTAGATGAAGAGAAAG+AGG + Chr1:91292602-91292621 None:intergenic 30.0%
TAGTCAATCTAACTTCTCAT+AGG + Chr1:91293293-91293312 None:intergenic 30.0%
TATTAACTTTCTCCTCTTTC+AGG - Chr1:91295342-91295361 MsG0180005395.01.T01:intron 30.0%
TCGTGATGTTATTAAGAGAT+TGG - Chr1:91293836-91293855 MsG0180005395.01.T01:intron 30.0%
TCTTGTGAATGTTTCTCATA+AGG - Chr1:91293126-91293145 MsG0180005395.01.T01:CDS 30.0%
TGGTTAATGAGTTTCAGTTA+AGG - Chr1:91294051-91294070 MsG0180005395.01.T01:intron 30.0%
TGTAGGTTCTCAGATATAAT+GGG - Chr1:91295710-91295729 MsG0180005395.01.T01:intron 30.0%
TTAGATATTTGTGCATGTGT+AGG - Chr1:91295148-91295167 MsG0180005395.01.T01:CDS 30.0%
TTTGATTCCTGTTCTCATAA+GGG - Chr1:91293166-91293185 MsG0180005395.01.T01:CDS 30.0%
! CTTTTCATTTTCATATGGCA+TGG + Chr1:91294645-91294664 None:intergenic 30.0%
! TAGAGTGTAATCTCCATTTT+AGG - Chr1:91296119-91296138 MsG0180005395.01.T01:five_prime_UTR 30.0%
!! CATTTTAGGAATTCATAGGA+TGG - Chr1:91296133-91296152 MsG0180005395.01.T01:five_prime_UTR 30.0%
!! TCTCCATTTTAGGAATTCAT+AGG - Chr1:91296129-91296148 MsG0180005395.01.T01:five_prime_UTR 30.0%
!! TCTTTCAGGTCTAATTTTCT+TGG - Chr1:91295356-91295375 MsG0180005395.01.T01:intron 30.0%
!!! CATTTTGTTTTCGATCTGTT+TGG - Chr1:91294971-91294990 MsG0180005395.01.T01:CDS 30.0%
!!! CTTTTTTCGAGTTGAATCTA+CGG + Chr1:91295451-91295470 None:intergenic 30.0%
!!! TGTTGATTTTGTTTTACAGC+CGG - Chr1:91294280-91294299 MsG0180005395.01.T01:intron 30.0%
!!! TTGTTTGTTTTAGCAAAGAG+AGG - Chr1:91292507-91292526 MsG0180005395.01.T01:three_prime_UTR 30.0%
ACCCTAACTGTAACAATCAT+TGG - Chr1:91294103-91294122 MsG0180005395.01.T01:intron 35.0%
AGATCCAGTAACACTTACAT+CGG - Chr1:91294924-91294943 MsG0180005395.01.T01:CDS 35.0%
ATAGTGACAAGAGATACATG+TGG - Chr1:91296087-91296106 MsG0180005395.01.T01:five_prime_UTR 35.0%
ATCGTGCAAAGGATAAACTA+CGG + Chr1:91295661-91295680 None:intergenic 35.0%
ATTCTTCAGTTCGGTAAAGT+CGG - Chr1:91295968-91295987 MsG0180005395.01.T01:five_prime_UTR 35.0%
CTCGAAAAAAGTTTCACCAA+AGG - Chr1:91295460-91295479 MsG0180005395.01.T01:intron 35.0%
CTGTAGGTTCTCAGATATAA+TGG - Chr1:91295709-91295728 MsG0180005395.01.T01:intron 35.0%
GAAGAAAAAAAATCTGGGTC+TGG + Chr1:91292717-91292736 None:intergenic 35.0%
GAATTGCTTGGATTGACAAA+GGG + Chr1:91294523-91294542 None:intergenic 35.0%
GCATGGACAACAAGAAATAT+TGG + Chr1:91294628-91294647 None:intergenic 35.0%
GCCAATGATTGTTACAGTTA+GGG + Chr1:91294107-91294126 None:intergenic 35.0%
GGCCATGTTCAAAAGAAAAA+GGG + Chr1:91296255-91296274 None:intergenic 35.0%
GGGCAATGACAAGATAAAAA+AGG + Chr1:91296235-91296254 None:intergenic 35.0%
GTAAAGTAATTCTTGGGTGA+TGG + Chr1:91295275-91295294 None:intergenic 35.0%
GTTATGAGATACTCTGTCTA+TGG + Chr1:91295011-91295030 None:intergenic 35.0%
TAATTCTGCTGAACTGCATA+TGG - Chr1:91294572-91294591 MsG0180005395.01.T01:intron 35.0%
TAGTATTGTTCGTGATGTGA+GGG - Chr1:91293665-91293684 MsG0180005395.01.T01:intron 35.0%
TCAACAAAGTAAAGCTTACC+AGG + Chr1:91294386-91294405 None:intergenic 35.0%
TCAACACTCTTGAATACTGT+GGG - Chr1:91293949-91293968 MsG0180005395.01.T01:CDS 35.0%
TCAGGAGATTAGTAGAAGTT+TGG + Chr1:91294129-91294148 None:intergenic 35.0%
TGAATTGCTTGGATTGACAA+AGG + Chr1:91294524-91294543 None:intergenic 35.0%
TGTTGATGTAGGAATCTTCT+AGG - Chr1:91292914-91292933 MsG0180005395.01.T01:CDS 35.0%
TTAAGAACAAGTCTCCTAGA+TGG - Chr1:91295780-91295799 MsG0180005395.01.T01:five_prime_UTR 35.0%
TTACAGTTAGGGTTCAAAGT+CGG + Chr1:91294096-91294115 None:intergenic 35.0%
TTATGAGTTATCGCATTTCG+TGG - Chr1:91294481-91294500 MsG0180005395.01.T01:CDS 35.0%
TTCCAATACACTGACAGTTT+CGG + Chr1:91293631-91293650 None:intergenic 35.0%
TTTGTCACAAAAGACACTCA+AGG + Chr1:91293601-91293620 None:intergenic 35.0%
! AATGTTGGTGCCTTAACTTT+AGG - Chr1:91295816-91295835 MsG0180005395.01.T01:intron 35.0%
! ACATTGGGAAGAGATTGTTT+TGG + Chr1:91296212-91296231 None:intergenic 35.0%
! ATGTTGGTGCCTTAACTTTA+GGG - Chr1:91295817-91295836 MsG0180005395.01.T01:intron 35.0%
! CTTTTGATGAAACACTGGAT+GGG + Chr1:91294320-91294339 None:intergenic 35.0%
! GACTTGTTCTTAAGAACTAG+AGG + Chr1:91295773-91295792 None:intergenic 35.0%
! TCTTTTGATGAAACACTGGA+TGG + Chr1:91294321-91294340 None:intergenic 35.0%
! TGCCCTTTTTCTTTTGAACA+TGG - Chr1:91296250-91296269 MsG0180005395.01.T02:intron 35.0%
! TGTCTCTTTTGATGAAACAC+TGG + Chr1:91294325-91294344 None:intergenic 35.0%
!! GGTTTCTGTTTTGTTGATGT+AGG - Chr1:91292903-91292922 MsG0180005395.01.T01:CDS 35.0%
!! TCATTGAAGTTTGGTGTTTG+AGG - Chr1:91293050-91293069 MsG0180005395.01.T01:CDS 35.0%
!!! GGTTCAATTTTTTGCTATGC+TGG - Chr1:91294687-91294706 MsG0180005395.01.T01:intron 35.0%
!!! GTTGATTTTGTTTTACAGCC+GGG - Chr1:91294281-91294300 MsG0180005395.01.T01:intron 35.0%
!!! TTGATTTTGTTTTACAGCCG+GGG - Chr1:91294282-91294301 MsG0180005395.01.T01:intron 35.0%
!!! TTTAGCTTTTAGGTCCATGT+GGG - Chr1:91293386-91293405 MsG0180005395.01.T01:CDS 35.0%
AAAGAATCCTCAAGATTGCG+GGG + Chr1:91295638-91295657 None:intergenic 40.0%
AAATCTGGGTCTGGAAGTTT+CGG + Chr1:91292708-91292727 None:intergenic 40.0%
AACGACAGGGTTAAGACAAA+AGG - Chr1:91294176-91294195 MsG0180005395.01.T01:intron 40.0%
ACACTTACATCGGAAAGCTT+AGG - Chr1:91294934-91294953 MsG0180005395.01.T01:CDS 40.0%
ACATATCGCAAAAGCCTGAA+AGG + Chr1:91296035-91296054 None:intergenic 40.0%
ACCAAGGACATTCAACTCAT+AGG + Chr1:91295519-91295538 None:intergenic 40.0%
AGATGAAGAGAAAGAGGAAC+AGG + Chr1:91292596-91292615 None:intergenic 40.0%
AGTTATACAGAACAGCCCAT+GGG - Chr1:91293791-91293810 MsG0180005395.01.T01:intron 40.0%
ATAACATCACGAAGAAGCTC+CGG + Chr1:91293828-91293847 None:intergenic 40.0%
ATAGTGCAATTCATCCTTCG+TGG + Chr1:91295551-91295570 None:intergenic 40.0%
ATGGATTTGGAAGCTTATCG+AGG - Chr1:91293688-91293707 MsG0180005395.01.T01:intron 40.0%
ATTCAACTCATAGGTGACCT+GGG + Chr1:91295510-91295529 None:intergenic 40.0%
ATTGAACCAACACGCAAAGT+AGG + Chr1:91294675-91294694 None:intergenic 40.0%
ATTGGGCGTCTGTGTAAAAT+TGG - Chr1:91295207-91295226 MsG0180005395.01.T01:five_prime_UTR 40.0%
CTTTCCGATGTAAGTGTTAC+TGG + Chr1:91294931-91294950 None:intergenic 40.0%
GAAAGAATCCTCAAGATTGC+GGG + Chr1:91295639-91295658 None:intergenic 40.0%
GAGAAGTAGAGAGAGAAAGT+TGG - Chr1:91292475-91292494 MsG0180005395.01.T01:three_prime_UTR 40.0%
GGAAAGAATCCTCAAGATTG+CGG + Chr1:91295640-91295659 None:intergenic 40.0%
GGCCAATGATTGTTACAGTT+AGG + Chr1:91294108-91294127 None:intergenic 40.0%
GGGCCATGTTCAAAAGAAAA+AGG + Chr1:91296256-91296275 None:intergenic 40.0%
GTAGTATTGTTCGTGATGTG+AGG - Chr1:91293664-91293683 MsG0180005395.01.T01:intron 40.0%
GTCAACACTCTTGAATACTG+TGG - Chr1:91293948-91293967 MsG0180005395.01.T01:CDS 40.0%
TACATCGGAAAGCTTAGGTA+TGG - Chr1:91294939-91294958 MsG0180005395.01.T01:CDS 40.0%
TAGTGCAATTCATCCTTCGT+GGG + Chr1:91295550-91295569 None:intergenic 40.0%
TTCCGAAACTGTCAGTGTAT+TGG - Chr1:91293626-91293645 MsG0180005395.01.T01:intron 40.0%
TTCTATCCTACTTTGCGTGT+TGG - Chr1:91294666-91294685 MsG0180005395.01.T01:intron 40.0%
TTGAATGTCCTTGGTACTAG+AGG - Chr1:91295524-91295543 MsG0180005395.01.T01:intron 40.0%
! ACCTATGAGTTGAATGTCCT+TGG - Chr1:91295515-91295534 MsG0180005395.01.T01:intron 40.0%
! GCAGCATTGCTTGTTGAAAA+TGG - Chr1:91294819-91294838 MsG0180005395.01.T01:intron 40.0%
! GTTGTGACTTGTAACTAGAG+TGG - Chr1:91293565-91293584 MsG0180005395.01.T01:intron 40.0%
! TGTTGGTGCCTTAACTTTAG+GGG - Chr1:91295818-91295837 MsG0180005395.01.T01:intron 40.0%
! TTCTCAGATATAATGGGAGC+TGG - Chr1:91295716-91295735 MsG0180005395.01.T01:intron 40.0%
! TTCTTGGGTGATGGCAAAAA+AGG + Chr1:91295266-91295285 None:intergenic 40.0%
! TTTTCAACAAGCAATGCTGC+AGG + Chr1:91294819-91294838 None:intergenic 40.0%
!! TTAGCTTTTAGGTCCATGTG+GGG - Chr1:91293387-91293406 MsG0180005395.01.T01:CDS 40.0%
!!! CTTTAGCTTTTAGGTCCATG+TGG - Chr1:91293385-91293404 MsG0180005395.01.T01:CDS 40.0%
AAGGCTTCCTGGACATCAAA+GGG - Chr1:91293725-91293744 MsG0180005395.01.T01:intron 45.0%
AATCTCCTGACCGATTACCA+GGG - Chr1:91294139-91294158 MsG0180005395.01.T01:intron 45.0%
AGTAAAGCTTACCAGGACTG+AGG + Chr1:91294379-91294398 None:intergenic 45.0%
ATTGTTCGTGATGTGAGGGA+TGG - Chr1:91293669-91293688 MsG0180005395.01.T01:intron 45.0%
CAACTGAGTTTAGCAGCTGT+AGG - Chr1:91295693-91295712 MsG0180005395.01.T01:intron 45.0%
CAGTTATACAGAACAGCCCA+TGG - Chr1:91293790-91293809 MsG0180005395.01.T01:intron 45.0%
CATTCAACTCATAGGTGACC+TGG + Chr1:91295511-91295530 None:intergenic 45.0%
CGATGTTGTAACTGCCACTA+GGG + Chr1:91295487-91295506 None:intergenic 45.0%
CGGCAAGGATATGTTTACGA+TGG - Chr1:91295988-91296007 MsG0180005395.01.T01:five_prime_UTR 45.0%
GAGAAAGAGGAACAGGAGTT+AGG + Chr1:91292589-91292608 None:intergenic 45.0%
GATTTGGAAGCTTATCGAGG+CGG - Chr1:91293691-91293710 MsG0180005395.01.T01:intron 45.0%
GGCATGAACAACTGCAATGT+TGG - Chr1:91295801-91295820 MsG0180005395.01.T01:five_prime_UTR 45.0%
GTTATCGATCGATCGTGCAA+AGG + Chr1:91295672-91295691 None:intergenic 45.0%
TAAGGCTTCCTGGACATCAA+AGG - Chr1:91293724-91293743 MsG0180005395.01.T01:intron 45.0%
TAATCTCCTGACCGATTACC+AGG - Chr1:91294138-91294157 MsG0180005395.01.T01:intron 45.0%
TCACACGTCCCCTAAAGTTA+AGG + Chr1:91295829-91295848 None:intergenic 45.0%
TCACCTGCTTCAGAGAAACA+GGG + Chr1:91293986-91294005 None:intergenic 45.0%
TCATCAAACAAAGCCCCACA+TGG + Chr1:91293403-91293422 None:intergenic 45.0%
TCCCTATAACAATGCTCAGC+TGG - Chr1:91295409-91295428 MsG0180005395.01.T01:intron 45.0%
TCCTCTTCCCTTATGAGAAC+AGG + Chr1:91293176-91293195 None:intergenic 45.0%
TCCTGTTCTCATAAGGGAAG+AGG - Chr1:91293172-91293191 MsG0180005395.01.T01:CDS 45.0%
TGCAGTTGTTCATGCCATCT+AGG + Chr1:91295797-91295816 None:intergenic 45.0%
! AGCCAGCTGAGCATTGTTAT+AGG + Chr1:91295414-91295433 None:intergenic 45.0%
! AGCTGAGCATTGTTATAGGG+AGG + Chr1:91295410-91295429 None:intergenic 45.0%
! CATGGGCTGTTCTGTATAAC+TGG + Chr1:91293792-91293811 None:intergenic 45.0%
! GAGGTTGATCATGCAACTCA+TGG + Chr1:91293770-91293789 None:intergenic 45.0%
! GCCAGCTGAGCATTGTTATA+GGG + Chr1:91295413-91295432 None:intergenic 45.0%
! GTTTCTCATAAGGGTGTGTG+AGG - Chr1:91293136-91293155 MsG0180005395.01.T01:CDS 45.0%
! TGTTTTACAGCCGGGGTATA+GGG - Chr1:91294289-91294308 MsG0180005395.01.T01:intron 45.0%
!! TGGAAGCAACTGAGAGTACT+TGG - Chr1:91293856-91293875 MsG0180005395.01.T01:intron 45.0%
!! TTGTTTTACAGCCGGGGTAT+AGG - Chr1:91294288-91294307 MsG0180005395.01.T01:intron 45.0%
!! TTTCCCTGTTTCTCTGAAGC+AGG - Chr1:91293980-91293999 MsG0180005395.01.T01:CDS 45.0%
!!! AGTTTTGAGGTAAGGCTTCC+TGG - Chr1:91293714-91293733 MsG0180005395.01.T01:intron 45.0%
AGGCTTCCTGGACATCAAAG+GGG - Chr1:91293726-91293745 MsG0180005395.01.T01:intron 50.0%
ATCTCCTGACCGATTACCAG+GGG - Chr1:91294140-91294159 MsG0180005395.01.T01:intron 50.0%
CTCACCTGCTTCAGAGAAAC+AGG + Chr1:91293987-91294006 None:intergenic 50.0%
CTCTGTGCAAGTCGTTCTTC+TGG + Chr1:91294871-91294890 None:intergenic 50.0%
GCGATGTTGTAACTGCCACT+AGG + Chr1:91295488-91295507 None:intergenic 50.0%
GGACTATCGATACCCTCTCT+CGG - Chr1:91296009-91296028 MsG0180005395.01.T01:five_prime_UTR 50.0%
GGGCTGTTCTGTATAACTGG+AGG + Chr1:91293789-91293808 None:intergenic 50.0%
GTTTCACCAAAGGTCCCTAG+TGG - Chr1:91295470-91295489 MsG0180005395.01.T01:intron 50.0%
TAACTGCCACTAGGGACCTT+TGG + Chr1:91295479-91295498 None:intergenic 50.0%
TCAGTTCGGTAAAGTCGGCA+AGG - Chr1:91295973-91295992 MsG0180005395.01.T01:five_prime_UTR 50.0%
TCTTAACCCTGTCGTTCCCA+GGG + Chr1:91294172-91294191 None:intergenic 50.0%
TTGTCATGGTCTGACTGTGC+TGG + Chr1:91295944-91295963 None:intergenic 50.0%
! CGTGATGTGAGGGATGGATT+TGG - Chr1:91293675-91293694 MsG0180005395.01.T01:intron 50.0%
! CTTATCGAGGCGGAGTTTTG+AGG - Chr1:91293701-91293720 MsG0180005395.01.T01:intron 50.0%
AAAGCCTGAAAGGCCGAGAG+AGG + Chr1:91296025-91296044 None:intergenic 55.0%
AAGCCTGAAAGGCCGAGAGA+GGG + Chr1:91296024-91296043 None:intergenic 55.0%
AAGGGGCAAGTCGCGTAGTT+CGG - Chr1:91293743-91293762 MsG0180005395.01.T01:intron 55.0%
ACATCACGAAGAAGCTCCGG+TGG + Chr1:91293825-91293844 None:intergenic 55.0%
AGATTGCGGGGAATGAGCTC+TGG + Chr1:91295626-91295645 None:intergenic 55.0%
AGCTGGCAATGAAGACGAGG+AGG - Chr1:91295733-91295752 MsG0180005395.01.T01:intron 55.0%
ATACCCTCTCTCGGCCTTTC+AGG - Chr1:91296018-91296037 MsG0180005395.01.T01:five_prime_UTR 55.0%
ATGGGTCCATCCCTATACCC+CGG + Chr1:91294302-91294321 None:intergenic 55.0%
CAGGACTGAGGCAAAGGAAG+AGG + Chr1:91294367-91294386 None:intergenic 55.0%
CTCTTCCTTTGCCTCAGTCC+TGG - Chr1:91294365-91294384 MsG0180005395.01.T01:intron 55.0%
CTTAACCCTGTCGTTCCCAG+GGG + Chr1:91294171-91294190 None:intergenic 55.0%
GACTGAGGCAAAGGAAGAGG+TGG + Chr1:91294364-91294383 None:intergenic 55.0%
GACTTGCCCCTTTGATGTCC+AGG + Chr1:91293735-91293754 None:intergenic 55.0%
GCAACCACATGCTTACGACC+AGG + Chr1:91293882-91293901 None:intergenic 55.0%
GCAATGAAGACGAGGAGGAG+GGG - Chr1:91295738-91295757 MsG0180005395.01.T01:intron 55.0%
GCATGTGGTTGCTTGTGCTG+CGG - Chr1:91293890-91293909 MsG0180005395.01.T01:CDS 55.0%
GCTCATTCCCCGCAATCTTG+AGG - Chr1:91295628-91295647 MsG0180005395.01.T01:intron 55.0%
GCTTACCAGGACTGAGGCAA+AGG + Chr1:91294373-91294392 None:intergenic 55.0%
GGCAATGAAGACGAGGAGGA+GGG - Chr1:91295737-91295756 MsG0180005395.01.T01:intron 55.0%
GTCTTAACCCTGTCGTTCCC+AGG + Chr1:91294173-91294192 None:intergenic 55.0%
TGGCAATGAAGACGAGGAGG+AGG - Chr1:91295736-91295755 MsG0180005395.01.T01:intron 55.0%
TGGCAGTTACAACATCGCCC+AGG - Chr1:91295490-91295509 MsG0180005395.01.T01:intron 55.0%
TTACAGCCGGGGTATAGGGA+TGG - Chr1:91294293-91294312 MsG0180005395.01.T01:intron 55.0%
TTCGTGGGCCTCTAGTACCA+AGG + Chr1:91295535-91295554 None:intergenic 55.0%
TTGAATCTACGGCTGCGTCC+AGG + Chr1:91295440-91295459 None:intergenic 55.0%
TTGGCCTGGTCGTAAGCATG+TGG - Chr1:91293875-91293894 MsG0180005395.01.T01:intron 55.0%
TTGGTACTAGAGGCCCACGA+AGG - Chr1:91295534-91295553 MsG0180005395.01.T01:intron 55.0%
!! GCAACTGAGAGTACTTGGCC+TGG - Chr1:91293861-91293880 MsG0180005395.01.T01:intron 55.0%
!!! CGAGGCGGAGTTTTGAGGTA+AGG - Chr1:91293706-91293725 MsG0180005395.01.T01:intron 55.0%
AAGGCCCCTGGTAATCGGTC+AGG + Chr1:91294147-91294166 None:intergenic 60.0%
AATCTACGGCTGCGTCCAGG+AGG + Chr1:91295437-91295456 None:intergenic 60.0%
ACCAGGCTCGAGGGATGAAG+CGG + Chr1:91295585-91295604 None:intergenic 60.0%
ATTACCAGGGGCCTTTCCCC+TGG - Chr1:91294152-91294171 MsG0180005395.01.T01:intron 60.0%
CACGAAGAAGCTCCGGTGGA+AGG + Chr1:91293821-91293840 None:intergenic 60.0%
CCTTTCCCCTGGGAACGACA+GGG - Chr1:91294163-91294182 MsG0180005395.01.T01:intron 60.0%
GACAACACCACCAGGCTCGA+GGG + Chr1:91295594-91295613 None:intergenic 60.0%
GGGAGCTGGCAATGAAGACG+AGG - Chr1:91295730-91295749 MsG0180005395.01.T01:intron 60.0%
GGGGAAAGGCCCCTGGTAAT+CGG + Chr1:91294152-91294171 None:intergenic 60.0%
TGAAGACGAGGAGGAGGGGA+AGG - Chr1:91295742-91295761 MsG0180005395.01.T01:intron 60.0%
TTACCAGGGGCCTTTCCCCT+GGG - Chr1:91294153-91294172 MsG0180005395.01.T01:intron 60.0%
! AATGCTCAGCTGGCTCCTCC+TGG - Chr1:91295419-91295438 MsG0180005395.01.T01:intron 60.0%
!! GAATGAGCTCTGGCTGGCCT+GGG + Chr1:91295616-91295635 None:intergenic 60.0%
!! TCTGACTGTGCTGGCTGCGA+CGG + Chr1:91295935-91295954 None:intergenic 60.0%
CAGGCTCGAGGGATGAAGCG+GGG + Chr1:91295583-91295602 None:intergenic 65.0%
CCAGGCTCGAGGGATGAAGC+GGG + Chr1:91295584-91295603 None:intergenic 65.0%
CCCTGTCGTTCCCAGGGGAA+AGG + Chr1:91294166-91294185 None:intergenic 65.0%
CGACGGTGCAGGTCCTGTTG+CGG + Chr1:91295918-91295937 None:intergenic 65.0%
GCAGGTCCTGTTGCGGCATG+AGG + Chr1:91295911-91295930 None:intergenic 65.0%
GCATGAGGAGCGACAGGTGC+AGG + Chr1:91295896-91295915 None:intergenic 65.0%
GCCTTTCCCCTGGGAACGAC+AGG - Chr1:91294162-91294181 MsG0180005395.01.T01:intron 65.0%
GCTTCATCCCTCGAGCCTGG+TGG - Chr1:91295584-91295603 MsG0180005395.01.T01:intron 65.0%
GGACAACACCACCAGGCTCG+AGG + Chr1:91295595-91295614 None:intergenic 65.0%
GTCGCTCCTCATGCCGCAAC+AGG - Chr1:91295902-91295921 MsG0180005395.01.T01:intron 65.0%
GTGCTGCGGTCTGCAAGTCG+TGG - Chr1:91293904-91293923 MsG0180005395.01.T01:CDS 65.0%
GTTGCGGCATGAGGAGCGAC+AGG + Chr1:91295902-91295921 None:intergenic 65.0%
TGGCCTGGGACAACACCACC+AGG + Chr1:91295602-91295621 None:intergenic 65.0%
! CCGGTGGAAGGCTAGCCCAT+GGG + Chr1:91293809-91293828 None:intergenic 65.0%
! GGAATGAGCTCTGGCTGGCC+TGG + Chr1:91295617-91295636 None:intergenic 65.0%
! TCCGGTGGAAGGCTAGCCCA+TGG + Chr1:91293810-91293829 None:intergenic 65.0%
! TGCGGGGAATGAGCTCTGGC+TGG + Chr1:91295622-91295641 None:intergenic 65.0%
!! CCCATGGGCTAGCCTTCCAC+CGG - Chr1:91293806-91293825 MsG0180005395.01.T01:intron 65.0%
!! GAGCCTGGTGGTGTTGTCCC+AGG - Chr1:91295596-91295615 MsG0180005395.01.T01:intron 65.0%
CCCGCTTCATCCCTCGAGCC+TGG - Chr1:91295581-91295600 MsG0180005395.01.T01:intron 70.0%
GTTCCCAGGGGAAAGGCCCC+TGG + Chr1:91294159-91294178 None:intergenic 70.0%
!! TGTGCTGGCTGCGACGGTGC+AGG + Chr1:91295929-91295948 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 91292436 91296398 91292436 ID=MsG0180005395.01;Name=MsG0180005395.01
Chr1 mRNA 91292436 91296222 91292436 ID=MsG0180005395.01.T01;Parent=MsG0180005395.01;Name=MsG0180005395.01.T01;_AED=0.24;_eAED=0.24;_QI=442|1|1|1|0.6|0.5|6|308|431
Chr1 exon 91295958 91296222 91295958 ID=MsG0180005395.01.T01:exon:14775;Parent=MsG0180005395.01.T01
Chr1 five_prime_UTR 91295958 91296222 91295958 ID=MsG0180005395.01.T01:five_prime_utr;Parent=MsG0180005395.01.T01
Chr1 five_prime_UTR 91295763 91295834 91295763 ID=MsG0180005395.01.T01:five_prime_utr;Parent=MsG0180005395.01.T01
Chr1 five_prime_UTR 91295181 91295285 91295181 ID=MsG0180005395.01.T01:five_prime_utr;Parent=MsG0180005395.01.T01
Chr1 CDS 91294833 91295180 91294833 ID=MsG0180005395.01.T01:cds;Parent=MsG0180005395.01.T01
Chr1 CDS 91294448 91294535 91294448 ID=MsG0180005395.01.T01:cds;Parent=MsG0180005395.01.T01
Chr1 CDS 91293879 91294011 91293879 ID=MsG0180005395.01.T01:cds;Parent=MsG0180005395.01.T01
Chr1 CDS 91292744 91293470 91292744 ID=MsG0180005395.01.T01:cds;Parent=MsG0180005395.01.T01
Chr1 three_prime_UTR 91292436 91292743 91292436 ID=MsG0180005395.01.T01:three_prime_utr;Parent=MsG0180005395.01.T01
Chr1 mRNA 91292436 91296398 91292436 ID=MsG0180005395.01.T02;Parent=MsG0180005395.01;Name=MsG0180005395.01.T02;_AED=0.26;_eAED=0.26;_QI=320|1|1|1|0.6|0.5|6|308|431
Chr1 exon 91296256 91296398 91296256 ID=MsG0180005395.01.T02:exon:14781;Parent=MsG0180005395.01.T02
Chr1 five_prime_UTR 91296256 91296398 91296256 ID=MsG0180005395.01.T02:five_prime_utr;Parent=MsG0180005395.01.T02
Chr1 five_prime_UTR 91295763 91295834 91295763 ID=MsG0180005395.01.T02:five_prime_utr;Parent=MsG0180005395.01.T02
Chr1 five_prime_UTR 91295181 91295285 91295181 ID=MsG0180005395.01.T02:five_prime_utr;Parent=MsG0180005395.01.T02
Chr1 CDS 91294833 91295180 91294833 ID=MsG0180005395.01.T02:cds;Parent=MsG0180005395.01.T02
Chr1 CDS 91294448 91294535 91294448 ID=MsG0180005395.01.T02:cds;Parent=MsG0180005395.01.T02
Chr1 CDS 91293879 91294011 91293879 ID=MsG0180005395.01.T02:cds;Parent=MsG0180005395.01.T02
Chr1 CDS 91292744 91293470 91292744 ID=MsG0180005395.01.T02:cds;Parent=MsG0180005395.01.T02
Chr1 three_prime_UTR 91292436 91292743 91292436 ID=MsG0180005395.01.T02:three_prime_utr;Parent=MsG0180005395.01.T02
Chr1 mRNA 91292436 91296245 91292436 ID=MsG0180005395.01.T03;Parent=MsG0180005395.01;Name=MsG0180005395.01.T03;_AED=0.23;_eAED=0.23;_QI=588|1|1|1|0.75|0.6|5|308|431
Chr1 exon 91295763 91296245 91295763 ID=MsG0180005395.01.T03:exon:14782;Parent=MsG0180005395.01.T03
Chr1 five_prime_UTR 91295763 91296245 91295763 ID=MsG0180005395.01.T03:five_prime_utr;Parent=MsG0180005395.01.T03
Chr1 five_prime_UTR 91295181 91295285 91295181 ID=MsG0180005395.01.T03:five_prime_utr;Parent=MsG0180005395.01.T03
Chr1 CDS 91294833 91295180 91294833 ID=MsG0180005395.01.T03:cds;Parent=MsG0180005395.01.T03
Chr1 CDS 91294448 91294535 91294448 ID=MsG0180005395.01.T03:cds;Parent=MsG0180005395.01.T03
Chr1 CDS 91293879 91294011 91293879 ID=MsG0180005395.01.T03:cds;Parent=MsG0180005395.01.T03
Chr1 CDS 91292744 91293470 91292744 ID=MsG0180005395.01.T03:cds;Parent=MsG0180005395.01.T03
Chr1 three_prime_UTR 91292436 91292743 91292436 ID=MsG0180005395.01.T03:three_prime_utr;Parent=MsG0180005395.01.T03
Gene Sequence

>MsG0180005395.01.T03

ATGTCATTTCGTAGTATTGTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCGAGGCGGAGTTTTGAGGTAAGGCTTCCTGGACATCAAAGGGGCAAGTCGCGTAGTTCGGTCCATGAGTTGCATGATCAACCTCCAGTTATACAGAACAGCCCATGGGCTAGCCTTCCACCGGAGCTTCTTCGTGATGTTATTAAGAGATTGGAAGCAACTGAGAGTACTTGGCCTGGTCGTAAGCATGTGGTTGCTTGTGCTGCGGTCTGCAAGTCGTGGAGAGAAATGTGCAAAGAAATTGTCAACACTCTTGAATACTGTGGGAAGATTACTTTCCCTGTTTCTCTGAAGCAGCCGGGGTATAGGGATGGACCCATCCAGTGTTTCATCAAAAGAGACAAATCTAAGCTGACATACCACCTCTTCCTTTGCCTCAGTCCTGCATTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGTACCAGAAGAACGACTTGCACAGAGTATGTTATATCAATGGATGCAGATAACATATCAAGATCCAGTAACACTTACATCGGAAAGCTTAGGTCTAATTTTCTTGGAACCAAGTTCATAATTTATGATACACAGCCTCCCTATAACAATGCTCAGCTGGCTCCTCCTGGACGCAGCCGTAGATTCAACTCGAAAAAAGTTTCACCAAAGGTCCCTAGTGGCAGTTACAACATCGCCCAGGTCACCTATGAGTTGAATGTCCTTGGTACTAGAGGCCCACGAAGGATGAATTGCACTATGCACTCAATCCCCGCTTCATCCCTCGAGCCTGGTGGTGTTGTCCCAGGCCAGCCAGAGCTCATTCCCCGCAATCTTGAGGATTCTTTCCGTAGTTTATCCTTTGCACGATCGATCGATAACTCAACTGAGTTTAGCAGCTGTAGGTTCTCAGATATAATGGGAGCTGGCAATGAAGACGAGGAGGAGGGGAAGGAGAGACCTCTAGTTCTTAAGAACAAGTCTCCTAGATGGCATGAACAACTGCAATGTTGGTGCCTTAACTTTAGGGGACGTGTGACTGTTGCGTCTGTTAAGAACTTTCAGCTGATCGCTGCAGCACAGCCTGCACCTGTCGCTCCTCATGCCGCAACAGGACCTGCACCGTCGCAGCCAGCACAGTCAGACCATGACAAGATTATTCTTCAGTTCGGTAAAGTCGGCAAGGATATGTTTACGATGGACTATCGATACCCTCTCTCGGCCTTTCAGGCTTTTGCGATATGTTTGACTAGCTTTGACACAAAACTTGCATGTGAATAG

>MsG0180005395.01.T01

ATGTCATTTCGTAGTATTGTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCGAGGCGGAGTTTTGAGGTAAGGCTTCCTGGACATCAAAGGGGCAAGTCGCGTAGTTCGGTCCATGAGTTGCATGATCAACCTCCAGTTATACAGAACAGCCCATGGGCTAGCCTTCCACCGGAGCTTCTTCGTGATGTTATTAAGAGATTGGAAGCAACTGAGAGTACTTGGCCTGGTCGTAAGCATGTGGTTGCTTGTGCTGCGGTCTGCAAGTCGTGGAGAGAAATGTGCAAAGAAATTGTCAACACTCTTGAATACTGTGGGAAGATTACTTTCCCTGTTTCTCTGAAGCAGCCGGGGTATAGGGATGGACCCATCCAGTGTTTCATCAAAAGAGACAAATCTAAGCTGACATACCACCTCTTCCTTTGCCTCAGTCCTGCATTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGTACCAGAAGAACGACTTGCACAGAGTATGTTATATCAATGGATGCAGATAACATATCAAGATCCAGTAACACTTACATCGGAAAGCTTAGGTCTAATTTTCTTGGAACCAAGTTCATAATTTATGATACACAGCCTCCCTATAACAATGCTCAGCTGGCTCCTCCTGGACGCAGCCGTAGATTCAACTCGAAAAAAGTTTCACCAAAGGTCCCTAGTGGCAGTTACAACATCGCCCAGGTCACCTATGAGTTGAATGTCCTTGGTACTAGAGGCCCACGAAGGATGAATTGCACTATGCACTCAATCCCCGCTTCATCCCTCGAGCCTGGTGGTGTTGTCCCAGGCCAGCCAGAGCTCATTCCCCGCAATCTTGAGGATTCTTTCCGTAGTTTATCCTTTGCACGATCGATCGATAACTCAACTGAGTTTAGCAGCTGTAGGTTCTCAGATATAATGGGAGCTGGCAATGAAGACGAGGAGGAGGGGAAGGAGAGACCTCTAGTTCTTAAGAACAAGTCTCCTAGATGGCATGAACAACTGCAATGTTGGTGCCTTAACTTTAGGGGACGTGTGACTGTTGCGTCTGTTAAGAACTTTCAGCTGATCGCTGCAGCACAGCCTGCACCTGTCGCTCCTCATGCCGCAACAGGACCTGCACCGTCGCAGCCAGCACAGTCAGACCATGACAAGATTATTCTTCAGTTCGGTAAAGTCGGCAAGGATATGTTTACGATGGACTATCGATACCCTCTCTCGGCCTTTCAGGCTTTTGCGATATGTTTGACTAGCTTTGACACAAAACTTGCATGTGAATAG

>MsG0180005395.01.T02

ATGTCATTTCGTAGTATTGTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCGAGGCGGAGTTTTGAGGTAAGGCTTCCTGGACATCAAAGGGGCAAGTCGCGTAGTTCGGTCCATGAGTTGCATGATCAACCTCCAGTTATACAGAACAGCCCATGGGCTAGCCTTCCACCGGAGCTTCTTCGTGATGTTATTAAGAGATTGGAAGCAACTGAGAGTACTTGGCCTGGTCGTAAGCATGTGGTTGCTTGTGCTGCGGTCTGCAAGTCGTGGAGAGAAATGTGCAAAGAAATTGTCAACACTCTTGAATACTGTGGGAAGATTACTTTCCCTGTTTCTCTGAAGCAGCCGGGGTATAGGGATGGACCCATCCAGTGTTTCATCAAAAGAGACAAATCTAAGCTGACATACCACCTCTTCCTTTGCCTCAGTCCTGCATTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGTACCAGAAGAACGACTTGCACAGAGTATGTTATATCAATGGATGCAGATAACATATCAAGATCCAGTAACACTTACATCGGAAAGCTTAGGTCTAATTTTCTTGGAACCAAGTTCATAATTTATGATACACAGCCTCCCTATAACAATGCTCAGCTGGCTCCTCCTGGACGCAGCCGTAGATTCAACTCGAAAAAAGTTTCACCAAAGGTCCCTAGTGGCAGTTACAACATCGCCCAGGTCACCTATGAGTTGAATGTCCTTGGTACTAGAGGCCCACGAAGGATGAATTGCACTATGCACTCAATCCCCGCTTCATCCCTCGAGCCTGGTGGTGTTGTCCCAGGCCAGCCAGAGCTCATTCCCCGCAATCTTGAGGATTCTTTCCGTAGTTTATCCTTTGCACGATCGATCGATAACTCAACTGAGTTTAGCAGCTGTAGGTTCTCAGATATAATGGGAGCTGGCAATGAAGACGAGGAGGAGGGGAAGGAGAGACCTCTAGTTCTTAAGAACAAGTCTCCTAGATGGCATGAACAACTGCAATGTTGGTGCCTTAACTTTAGGGGACGTGTGACTGTTGCGTCTGTTAAGAACTTTCAGCTGATCGCTGCAGCACAGCCTGCACCTGTCGCTCCTCATGCCGCAACAGGACCTGCACCGTCGCAGCCAGCACAGTCAGACCATGACAAGATTATTCTTCAGTTCGGTAAAGTCGGCAAGGATATGTTTACGATGGACTATCGATACCCTCTCTCGGCCTTTCAGGCTTTTGCGATATGTTTGACTAGCTTTGACACAAAACTTGCATGTGAATAG

Protein sequence

>MsG0180005395.01.T03

MSFRSIVRDVRDGFGSLSRRSFEVRLPGHQRGKSRSSVHELHDQPPVIQNSPWASLPPELLRDVIKRLEATESTWPGRKHVVACAAVCKSWREMCKEIVNTLEYCGKITFPVSLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQLAPPGRSRRFNSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMHSIPASSLEPGGVVPGQPELIPRNLEDSFRSLSFARSIDNSTEFSSCRFSDIMGAGNEDEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAQPAPVAPHAATGPAPSQPAQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE*

>MsG0180005395.01.T01

MSFRSIVRDVRDGFGSLSRRSFEVRLPGHQRGKSRSSVHELHDQPPVIQNSPWASLPPELLRDVIKRLEATESTWPGRKHVVACAAVCKSWREMCKEIVNTLEYCGKITFPVSLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQLAPPGRSRRFNSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMHSIPASSLEPGGVVPGQPELIPRNLEDSFRSLSFARSIDNSTEFSSCRFSDIMGAGNEDEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAQPAPVAPHAATGPAPSQPAQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE*

>MsG0180005395.01.T02

MSFRSIVRDVRDGFGSLSRRSFEVRLPGHQRGKSRSSVHELHDQPPVIQNSPWASLPPELLRDVIKRLEATESTWPGRKHVVACAAVCKSWREMCKEIVNTLEYCGKITFPVSLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQLAPPGRSRRFNSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMHSIPASSLEPGGVVPGQPELIPRNLEDSFRSLSFARSIDNSTEFSSCRFSDIMGAGNEDEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAQPAPVAPHAATGPAPSQPAQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE*