AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040825.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040825.01.T01 MTR_7g099210 80.402 199 1 1 10 170 573 771 1.24e-104 317
MsG0780040825.01.T01 MTR_1g069355 68.844 199 24 1 10 170 545 743 6.21e-86 267
MsG0780040825.01.T01 MTR_1g069355 51.389 216 50 4 10 170 545 760 1.08e-56 189
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040825.01.T01 AT1G04140 61.421 197 38 1 10 168 587 783 3.54e-76 242
MsG0780040825.01.T01 AT1G04140 61.421 197 38 1 10 168 587 783 4.29e-76 242
MsG0780040825.01.T01 AT5G43930 62.032 187 33 1 10 158 539 725 2.91e-73 233
MsG0780040825.01.T01 AT5G43930 62.032 187 33 1 10 158 539 725 2.91e-73 233
MsG0780040825.01.T01 AT5G43930 62.032 187 33 1 10 158 539 725 2.91e-73 233
MsG0780040825.01.T01 AT5G43930 62.032 187 33 1 10 158 565 751 3.28e-73 234

Find 81 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATTAGCAAATGTATATTT+TGG 0.162945 7:-83004705 MsG0780040825.01.T01:three_prime_UTR
ATGATCTTATAACGTAAATT+TGG 0.230467 7:-83004453 MsG0780040825.01.T01:three_prime_UTR
TTTCAGATATGGAACTTGTT+AGG 0.251727 7:-83006584 MsG0780040825.01.T01:CDS
TCATTGTCTGACTTCAATTC+AGG 0.291181 7:-83007224 MsG0780040825.01.T01:intron
AAGGAGGAAAGAGGAGGGTT+GGG 0.307005 7:+83004602 None:intergenic
AGGAGGAAAGAGGAGGGTTG+GGG 0.317492 7:+83004603 None:intergenic
TGGGTTGGTGCTTGCGTCTC+GGG 0.360655 7:-83007260 MsG0780040825.01.T01:CDS
ATAACTTGGTGTGCTGATAT+TGG 0.368312 7:+83007427 None:intergenic
GAAAGGAAGTCGCCCACTAA+TGG 0.369183 7:+83004574 None:intergenic
GGTATATAGAGTTTCAGATA+TGG 0.377588 7:-83006595 MsG0780040825.01.T01:CDS
GGAGGAAAGAGGAGGGTTGG+GGG 0.380036 7:+83004604 None:intergenic
TTGTTGCCTGTGCTCAGCCC+TGG 0.380944 7:+83004751 None:intergenic
GTTTGCACTTTGCAGTGAAA+TGG 0.384877 7:-83007584 MsG0780040825.01.T01:CDS
TCCTCCTTCATGCCCATTAG+TGG 0.404318 7:-83004587 MsG0780040825.01.T01:three_prime_UTR
TTGGGTTGGTGCTTGCGTCT+CGG 0.413309 7:-83007261 MsG0780040825.01.T01:CDS
TTCAGATATGGAACTTGTTA+GGG 0.425236 7:-83006583 MsG0780040825.01.T01:CDS
GAAGGAGGAAAGAGGAGGGT+TGG 0.438809 7:+83004601 None:intergenic
GAGCACAGGCAACAAAGAAC+TGG 0.443845 7:-83004743 MsG0780040825.01.T01:three_prime_UTR
AAAGGAAGTCGCCCACTAAT+GGG 0.455839 7:+83004575 None:intergenic
CCAGGATCAGCTTCTATATG+AGG 0.462050 7:+83007505 None:intergenic
TCCATAAACTAGCCCGCCCC+CGG 0.464616 7:+83006509 None:intergenic
CCTCATATAGAAGCTGATCC+TGG 0.469762 7:-83007505 MsG0780040825.01.T01:CDS
TTAACATCATCATCATATCC+AGG 0.473813 7:-83004769 MsG0780040825.01.T01:three_prime_UTR
GATGGTGCTCACCCGGTGAA+TGG 0.478651 7:-83006371 MsG0780040825.01.T01:CDS
ATACCAGACTCTTGATGTAC+TGG 0.480973 7:+83007472 None:intergenic
TGTACTGGAGTTTGTAATCC+AGG 0.482691 7:+83007487 None:intergenic
TTTGCACTTTGCAGTGAAAT+GGG 0.485735 7:-83007583 MsG0780040825.01.T01:CDS
TGCCTTACGTTGCCTCCTCA+AGG 0.498284 7:+83007383 None:intergenic
CTTAGGATCCTCCACTATGA+TGG 0.508020 7:-83006389 MsG0780040825.01.T01:CDS
CTTGGTCCAGTCCCATTCAC+CGG 0.513341 7:+83006359 None:intergenic
CTTGTTAAACAGATTTGGGT+TGG 0.513751 7:-83007275 MsG0780040825.01.T01:intron
GATAATGTGAAGCAGATCAC+TGG 0.513915 7:+83005120 None:intergenic
CCTCCTTCATGCCCATTAGT+GGG 0.515475 7:-83004586 MsG0780040825.01.T01:three_prime_UTR
ATCTACCGCATGGTGAAAAG+TGG 0.515762 7:+83007557 None:intergenic
CCACTATGATGGTGCTCACC+CGG 0.519861 7:-83006378 MsG0780040825.01.T01:CDS
ATGGTGCTCACCCGGTGAAT+GGG 0.521215 7:-83006370 MsG0780040825.01.T01:CDS
GCTCACCCGGTGAATGGGAC+TGG 0.525493 7:-83006365 MsG0780040825.01.T01:CDS
ACTCCAGTACATCAAGAGTC+TGG 0.526460 7:-83007475 MsG0780040825.01.T01:CDS
AATTGTAGGAAGGAAAGCTT+AGG 0.529620 7:-83006406 MsG0780040825.01.T01:intron
AACACAAGATTTAGAGTGGT+GGG 0.529860 7:+83004405 None:intergenic
GTCTCCTCAGGAAAGTAACT+TGG 0.533065 7:+83006341 None:intergenic
TCCGCAGCTCATACATAACT+TGG 0.534468 7:+83007413 None:intergenic
CCGGGTGAGCACCATCATAG+TGG 0.550472 7:+83006378 None:intergenic
GCATGAAGGAGGAAAGAGGA+GGG 0.551245 7:+83004597 None:intergenic
CATTATCTTTACTACTCACG+TGG 0.551299 7:-83005104 MsG0780040825.01.T01:intron
TTCACTGCAAAGTGCAAACA+CGG 0.553418 7:+83007588 None:intergenic
ATTATGAGATTTCTCTGATG+AGG 0.558706 7:+83004507 None:intergenic
GCCTTACGTTGCCTCCTCAA+GGG 0.559128 7:+83007384 None:intergenic
TCATATCCAGGGCTGAGCAC+AGG 0.559687 7:-83004757 MsG0780040825.01.T01:three_prime_UTR
TTTCCTGAGGAGACCATCGT+TGG 0.560017 7:-83006332 MsG0780040825.01.T01:CDS
ACTCCAACGATGGTCTCCTC+AGG 0.564018 7:+83006329 None:intergenic
TCGCCCACTAATGGGCATGA+AGG 0.565928 7:+83004583 None:intergenic
TGAACATGTTACACGTGGAA+AGG 0.575971 7:+83004557 None:intergenic
TAACATGTTCAGTAGTTACA+AGG 0.576735 7:-83004545 MsG0780040825.01.T01:three_prime_UTR
TTGGAGTCAGTCAGTGAGCA+AGG 0.593135 7:-83006313 MsG0780040825.01.T01:intron
AAACACAAGATTTAGAGTGG+TGG 0.597109 7:+83004404 None:intergenic
ATGGGCATGAAGGAGGAAAG+AGG 0.597364 7:+83004593 None:intergenic
AGGTTCAAACATGATAGAGA+TGG 0.599456 7:-83005146 MsG0780040825.01.T01:three_prime_UTR
TTGACCTCATCTTCAGCACT+CGG 0.599552 7:+83006555 None:intergenic
GCTGATATTGGATGCCGAGT+TGG 0.600979 7:+83007439 None:intergenic
TTGGTCCAGTCCCATTCACC+GGG 0.609927 7:+83006360 None:intergenic
CCCACTAATGGGCATGAAGG+AGG 0.610166 7:+83004586 None:intergenic
TCACTGACTGACTCCAACGA+TGG 0.611704 7:+83006319 None:intergenic
TAACATCATCATCATATCCA+GGG 0.613240 7:-83004768 MsG0780040825.01.T01:three_prime_UTR
GGCATGAAGGAGGAAAGAGG+AGG 0.614677 7:+83004596 None:intergenic
GCTTCCGAGTGCTGAAGATG+AGG 0.627162 7:-83006559 MsG0780040825.01.T01:CDS
TCTACCGCATGGTGAAAAGT+GGG 0.629253 7:+83007558 None:intergenic
AACTTTGTACAGATCATCAG+CGG 0.631432 7:+83004790 None:intergenic
AACATGTTCAGTAGTTACAA+GGG 0.635795 7:-83004544 MsG0780040825.01.T01:three_prime_UTR
TGGACCAAGTTACTTTCCTG+AGG 0.638172 7:-83006345 MsG0780040825.01.T01:CDS
AGGAAGCATACATGCAACAC+AGG 0.643675 7:+83007525 None:intergenic
GTATTGCAACATCACCAACT+CGG 0.653630 7:-83007453 MsG0780040825.01.T01:CDS
GCGGATATATTCCCTTGAGG+AGG 0.655726 7:-83007395 MsG0780040825.01.T01:CDS
ACATGTTCAGTAGTTACAAG+GGG 0.657289 7:-83004543 MsG0780040825.01.T01:three_prime_UTR
CGGGCTAGTTTATGGAACAA+AGG 0.666139 7:-83006502 MsG0780040825.01.T01:intron
GGTGAGCACCATCATAGTGG+AGG 0.674931 7:+83006381 None:intergenic
ACTACTGAACATGTTACACG+TGG 0.679467 7:+83004552 None:intergenic
ACCAAGTTATGTATGAGCTG+CGG 0.681787 7:-83007414 MsG0780040825.01.T01:CDS
GCTGCGGATATATTCCCTTG+AGG 0.702528 7:-83007398 MsG0780040825.01.T01:CDS
TGCTGAAGATGAGGTCAATG+TGG 0.716427 7:-83006550 MsG0780040825.01.T01:CDS
CATGTTCAGTAGTTACAAGG+GGG 0.743174 7:-83004542 MsG0780040825.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GACATAAATTAATATTTTTT+AGG - Chr7:83005354-83005373 MsG0780040825.01.T01:intron 10.0%
!! AAAATAAAAAACAAAGACTA+TGG + Chr7:83006420-83006439 None:intergenic 15.0%
!! AGAATATCAATATAAACTTA+TGG + Chr7:83007062-83007081 None:intergenic 15.0%
!! ATTATGTTTAAACTTAACAA+AGG + Chr7:83005100-83005119 None:intergenic 15.0%
!! TTTCAAAAAATAATAATACG+AGG + Chr7:83006051-83006070 None:intergenic 15.0%
!!! CGTATTATTATTTTTTGAAA+TGG - Chr7:83006051-83006070 MsG0780040825.01.T01:intron 15.0%
!! AAAAAGTCAATCATGAAATA+AGG + Chr7:83004921-83004940 None:intergenic 20.0%
!! AAATCATACAAAACTACAAT+AGG + Chr7:83005309-83005328 None:intergenic 20.0%
!! AACCATTAGAAAAGATTTAA+AGG - Chr7:83006266-83006285 MsG0780040825.01.T01:intron 20.0%
!! AAGATAAACCAAATATTACA+GGG + Chr7:83006475-83006494 None:intergenic 20.0%
!! AATACAACAAAACTATCAAA+AGG + Chr7:83006564-83006583 None:intergenic 20.0%
!! ATCATATATGAGTGAATTTA+AGG - Chr7:83006749-83006768 MsG0780040825.01.T01:intron 20.0%
!! ATGATCTTATAACGTAAATT+TGG - Chr7:83007570-83007589 MsG0780040825.01.T01:CDS 20.0%
!! CAATGCACATAATAAATAAA+AGG + Chr7:83004973-83004992 None:intergenic 20.0%
!! CCAAGATAAATTTAAGAAAT+TGG - Chr7:83006665-83006684 MsG0780040825.01.T01:intron 20.0%
!! CCAATTTCTTAAATTTATCT+TGG + Chr7:83006668-83006687 None:intergenic 20.0%
!! TAATTAGACAACTATAAAAG+TGG - Chr7:83005762-83005781 MsG0780040825.01.T01:intron 20.0%
!! TTAACAATTAAGCAATTCAA+GGG + Chr7:83005585-83005604 None:intergenic 20.0%
!!! AGGTTATATATTGATTCTTT+TGG - Chr7:83005730-83005749 MsG0780040825.01.T01:intron 20.0%
!!! GGTTATATATTGATTCTTTT+GGG - Chr7:83005731-83005750 MsG0780040825.01.T01:intron 20.0%
!!! GTTATATATTGATTCTTTTG+GGG - Chr7:83005732-83005751 MsG0780040825.01.T01:intron 20.0%
!!! TTGGTATTTGCTTTTTTTAA+AGG - Chr7:83007589-83007608 MsG0780040825.01.T01:CDS 20.0%
! AAGTATTTGTATCTTTGACT+TGG + Chr7:83004949-83004968 None:intergenic 25.0%
! AATTAGATGAAAACTTTGTG+AGG + Chr7:83006855-83006874 None:intergenic 25.0%
! ACCTATATATACAGTATTAG+AGG - Chr7:83005267-83005286 MsG0780040825.01.T01:intron 25.0%
! ACCTCTAATACTGTATATAT+AGG + Chr7:83005271-83005290 None:intergenic 25.0%
! ACTATGGAAAAACAATTACA+GGG + Chr7:83006404-83006423 None:intergenic 25.0%
! AGTACTAAATTGATCTCAAA+TGG - Chr7:83005824-83005843 MsG0780040825.01.T01:intron 25.0%
! ATTTACTTAATTGGTTGACT+TGG + Chr7:83007104-83007123 None:intergenic 25.0%
! ATTTGCAATTACAAGATGTT+TGG - Chr7:83005979-83005998 MsG0780040825.01.T01:intron 25.0%
! GAAGATAAACCAAATATTAC+AGG + Chr7:83006476-83006495 None:intergenic 25.0%
! GTACTAAATTGATCTCAAAT+GGG - Chr7:83005825-83005844 MsG0780040825.01.T01:intron 25.0%
! GTTAACAATTAAGCAATTCA+AGG + Chr7:83005586-83005605 None:intergenic 25.0%
! GTTCTATCAAAAACCATATT+TGG + Chr7:83006306-83006325 None:intergenic 25.0%
! TAACAACCTACAATAACAAA+GGG + Chr7:83005030-83005049 None:intergenic 25.0%
! TACTAAATTGATCTCAAATG+GGG - Chr7:83005826-83005845 MsG0780040825.01.T01:intron 25.0%
! TAGAAAAAAGCAAGACATAA+AGG + Chr7:83006967-83006986 None:intergenic 25.0%
! TTAACAACCTACAATAACAA+AGG + Chr7:83005031-83005050 None:intergenic 25.0%
! TTAATCTCAATTTCATGTCT+TGG - Chr7:83005387-83005406 MsG0780040825.01.T01:intron 25.0%
! TTAATGTTAGACTATGATGA+TGG - Chr7:83005850-83005869 MsG0780040825.01.T01:intron 25.0%
!! AACACAAACATTTTTACAAC+AGG + Chr7:83007389-83007408 None:intergenic 25.0%
!! AACTTTTTGCTTGTAATTGT+AGG - Chr7:83005603-83005622 MsG0780040825.01.T01:intron 25.0%
!! ATGTATTTGGTTCAAAATGT+CGG - Chr7:83006812-83006831 MsG0780040825.01.T01:intron 25.0%
!! CAAAGTTTTCATCTAATTGT+AGG - Chr7:83006857-83006876 MsG0780040825.01.T01:intron 25.0%
!! GACCTTTAAATCTTTTCTAA+TGG + Chr7:83006271-83006290 None:intergenic 25.0%
!! GATACTTGTTAAACAGATTT+GGG - Chr7:83004744-83004763 MsG0780040825.01.T01:three_prime_UTR 25.0%
!! GCATTAGCAAATGTATATTT+TGG - Chr7:83007318-83007337 MsG0780040825.01.T01:intron 25.0%
!! TAAGCATTTACTATTTCTTC+TGG - Chr7:83004681-83004700 MsG0780040825.01.T01:three_prime_UTR 25.0%
!! TATATTACCGTGATTGATTT+GGG - Chr7:83006535-83006554 MsG0780040825.01.T01:CDS 25.0%
!! TCAATTAGTTCTTTAATGCT+CGG - Chr7:83006494-83006513 MsG0780040825.01.T01:intron 25.0%
!! TTGTAAAGCAATTTTGTTCA+TGG - Chr7:83005120-83005139 MsG0780040825.01.T01:three_prime_UTR 25.0%
!! TTTTCTAATGGTTTCTCTAA+TGG + Chr7:83006259-83006278 None:intergenic 25.0%
!!! AAGATCCATTTTAAAATCAC+TGG + Chr7:83007195-83007214 None:intergenic 25.0%
!!! AGAAGCTTTGAAGTTTAAAA+AGG - Chr7:83005941-83005960 MsG0780040825.01.T01:intron 25.0%
!!! CACTGCATTTTAATTCATTA+TGG + Chr7:83005005-83005024 None:intergenic 25.0%
!!! GGTTTTTCGATTTACTTAAT+TGG + Chr7:83007113-83007132 None:intergenic 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG - Chr7:83006127-83006146 MsG0780040825.01.T01:intron 25.0%
!!! TATTTTTGCATCAAATGAAG+AGG - Chr7:83007007-83007026 MsG0780040825.01.T01:intron 25.0%
!!! TGACTTGGTTAAAAAAATCA+AGG + Chr7:83007089-83007108 None:intergenic 25.0%
!!! TTACTATTTCTTCTGGTTTA+AGG - Chr7:83004688-83004707 MsG0780040825.01.T01:three_prime_UTR 25.0%
AAAAAAGCAAGACATAAAGG+AGG + Chr7:83006964-83006983 None:intergenic 30.0%
AACAATTAAAACTCGTGTTG+AGG - Chr7:83005911-83005930 MsG0780040825.01.T01:intron 30.0%
AACATGTTCAGTAGTTACAA+GGG - Chr7:83007479-83007498 MsG0780040825.01.T01:CDS 30.0%
ACAACTATAAAAGTGGTGTT+TGG - Chr7:83005769-83005788 MsG0780040825.01.T01:intron 30.0%
AGTGAATTTAAGGATCACAT+TGG - Chr7:83006759-83006778 MsG0780040825.01.T01:intron 30.0%
ATTATGAGATTTCTCTGATG+AGG + Chr7:83007519-83007538 None:intergenic 30.0%
CATACAAAACTACAATAGGT+AGG + Chr7:83005305-83005324 None:intergenic 30.0%
CATTTGATCTCTTCTTACAA+CGG + Chr7:83006193-83006212 None:intergenic 30.0%
GACTATGGAAAAACAATTAC+AGG + Chr7:83006405-83006424 None:intergenic 30.0%
GGATATGAAGAAGAAAAAGA+AGG + Chr7:83004900-83004919 None:intergenic 30.0%
GGTATATAGAGTTTCAGATA+TGG - Chr7:83005428-83005447 MsG0780040825.01.T01:intron 30.0%
GTATATTACCGTGATTGATT+TGG - Chr7:83006534-83006553 MsG0780040825.01.T01:CDS 30.0%
TAACATCATCATCATATCCA+GGG - Chr7:83007255-83007274 MsG0780040825.01.T01:CDS 30.0%
TAACATGTTCAGTAGTTACA+AGG - Chr7:83007478-83007497 MsG0780040825.01.T01:CDS 30.0%
TGAAGAAGAAAAAGAAGGTA+CGG + Chr7:83004895-83004914 None:intergenic 30.0%
TTAACATCATCATCATATCC+AGG - Chr7:83007254-83007273 MsG0780040825.01.T01:CDS 30.0%
! AACAAAGGTATGACTTTACT+GGG - Chr7:83005536-83005555 MsG0780040825.01.T01:intron 30.0%
! CGATACTTGTTAAACAGATT+TGG - Chr7:83004743-83004762 MsG0780040825.01.T01:three_prime_UTR 30.0%
! GTTTCTCTAATGGTTTTCTT+AGG + Chr7:83006249-83006268 None:intergenic 30.0%
! TCTACCAACTTTTCTACTAT+AGG + Chr7:83006123-83006142 None:intergenic 30.0%
! TGGTTTTTGATAGAACACTA+TGG - Chr7:83006310-83006329 MsG0780040825.01.T01:intron 30.0%
! TGTATTTGGTTCAAAATGTC+GGG - Chr7:83006813-83006832 MsG0780040825.01.T01:intron 30.0%
! TTTCAGATATGGAACTTGTT+AGG - Chr7:83005439-83005458 MsG0780040825.01.T01:intron 30.0%
! TTTTGCTTGTAATTGTAGGA+AGG - Chr7:83005607-83005626 MsG0780040825.01.T01:intron 30.0%
!! AACTGCCAGTGATTTTAAAA+TGG - Chr7:83007187-83007206 MsG0780040825.01.T01:intron 30.0%
!! GTTTTAGTCCCTGTAATATT+TGG - Chr7:83006464-83006483 MsG0780040825.01.T01:intron 30.0%
!! TCTAAAAGCATTGTCATTGA+TGG - Chr7:83005232-83005251 MsG0780040825.01.T01:intron 30.0%
!! TGGAATTTGCTTTGTGTTTT+AGG - Chr7:83005407-83005426 MsG0780040825.01.T01:intron 30.0%
!! TGGTTTTCATTCTTTGCTAT+GGG - Chr7:83005999-83006018 MsG0780040825.01.T01:intron 30.0%
!! TTCAGATATGGAACTTGTTA+GGG - Chr7:83005440-83005459 MsG0780040825.01.T01:intron 30.0%
!! TTGGTTTTCATTCTTTGCTA+TGG - Chr7:83005998-83006017 MsG0780040825.01.T01:intron 30.0%
AACTTTGTACAGATCATCAG+CGG + Chr7:83007236-83007255 None:intergenic 35.0%
AAGGATTCCCAAATCAATCA+CGG + Chr7:83006545-83006564 None:intergenic 35.0%
AATGAAAGCTCAACTTCTTG+AGG - Chr7:83007133-83007152 MsG0780040825.01.T01:intron 35.0%
AATTGTAGGAAGGAAAGCTT+AGG - Chr7:83005617-83005636 MsG0780040825.01.T01:intron 35.0%
ACATGTTCAGTAGTTACAAG+GGG - Chr7:83007480-83007499 MsG0780040825.01.T01:CDS 35.0%
AGATTTAAAGGTCAATGAGC+TGG - Chr7:83006278-83006297 MsG0780040825.01.T01:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG - Chr7:83006116-83006135 MsG0780040825.01.T01:intron 35.0%
AGGTTCAAACATGATAGAGA+TGG - Chr7:83006877-83006896 MsG0780040825.01.T01:intron 35.0%
CATTATCTTTACTACTCACG+TGG - Chr7:83006919-83006938 MsG0780040825.01.T01:intron 35.0%
CGTTGTAAGAAGAGATCAAA+TGG - Chr7:83006191-83006210 MsG0780040825.01.T01:intron 35.0%
CTTGTTAAACAGATTTGGGT+TGG - Chr7:83004748-83004767 MsG0780040825.01.T01:three_prime_UTR 35.0%
GAAAATAGGCTTAGATGGTT+TGG - Chr7:83006141-83006160 MsG0780040825.01.T01:intron 35.0%
TCAAGAAGTTGAGCTTTCAT+TGG + Chr7:83007134-83007153 None:intergenic 35.0%
TCATTGTCTGACTTCAATTC+AGG - Chr7:83004799-83004818 MsG0780040825.01.T01:three_prime_UTR 35.0%
TGGTAGAAAATAGGCTTAGA+TGG - Chr7:83006136-83006155 MsG0780040825.01.T01:intron 35.0%
TGTAAGAAGAGATCAAATGG+AGG - Chr7:83006194-83006213 MsG0780040825.01.T01:intron 35.0%
TTTGCACTTTGCAGTGAAAT+GGG - Chr7:83004440-83004459 MsG0780040825.01.T01:three_prime_UTR 35.0%
! ACAAAGGTATGACTTTACTG+GGG - Chr7:83005537-83005556 MsG0780040825.01.T01:intron 35.0%
! GAACAAAGGTATGACTTTAC+TGG - Chr7:83005535-83005554 MsG0780040825.01.T01:intron 35.0%
! TTGGTTGTTGTTGTTGTTGT+TGG - Chr7:83006377-83006396 MsG0780040825.01.T01:CDS 35.0%
! TTTTGCATCAAATGAAGAGG+TGG - Chr7:83007010-83007029 MsG0780040825.01.T01:intron 35.0%
!! AGTGAACCCTTTGTTATTGT+AGG - Chr7:83005021-83005040 MsG0780040825.01.T01:intron 35.0%
!! ATAACTTGGTGTGCTGATAT+TGG + Chr7:83004599-83004618 None:intergenic 35.0%
!! ATGGTGTCATTCACAATTAC+AGG + Chr7:83006079-83006098 None:intergenic 35.0%
!! TGGTGTCATTCACAATTACA+GGG + Chr7:83006078-83006097 None:intergenic 35.0%
!!! GCTTTTTTCTACACAAGTAG+TGG - Chr7:83006976-83006995 MsG0780040825.01.T01:intron 35.0%
ACCAAGTTATGTATGAGCTG+CGG - Chr7:83004609-83004628 MsG0780040825.01.T01:three_prime_UTR 40.0%
ACTACTGAACATGTTACACG+TGG + Chr7:83007474-83007493 None:intergenic 40.0%
ATACCAGACTCTTGATGTAC+TGG + Chr7:83004554-83004573 None:intergenic 40.0%
ATCACTGGCAGTTGAAAAGA+AGG + Chr7:83007180-83007199 None:intergenic 40.0%
CAATGAGCTGGATCCAAATA+TGG - Chr7:83006290-83006309 MsG0780040825.01.T01:intron 40.0%
CATGTTCAGTAGTTACAAGG+GGG - Chr7:83007481-83007500 MsG0780040825.01.T01:CDS 40.0%
CCAAATACATACTCGCATGA+AGG + Chr7:83006802-83006821 None:intergenic 40.0%
CCTTCATGCGAGTATGTATT+TGG - Chr7:83006799-83006818 MsG0780040825.01.T01:intron 40.0%
GATAATGTGAAGCAGATCAC+TGG + Chr7:83006906-83006925 None:intergenic 40.0%
GTATTGCAACATCACCAACT+CGG - Chr7:83004570-83004589 MsG0780040825.01.T01:three_prime_UTR 40.0%
GTTTGCACTTTGCAGTGAAA+TGG - Chr7:83004439-83004458 MsG0780040825.01.T01:three_prime_UTR 40.0%
TCTTCTTACAACGGCATCTA+CGG + Chr7:83006184-83006203 None:intergenic 40.0%
TGAACATGTTACACGTGGAA+AGG + Chr7:83007469-83007488 None:intergenic 40.0%
TGTACTGGAGTTTGTAATCC+AGG + Chr7:83004539-83004558 None:intergenic 40.0%
TTCACTGCAAAGTGCAAACA+CGG + Chr7:83004438-83004457 None:intergenic 40.0%
! CAAAGGTATGACTTTACTGG+GGG - Chr7:83005538-83005557 MsG0780040825.01.T01:intron 40.0%
! TTCCTCTACCTCTTTTAACC+TGG + Chr7:83006224-83006243 None:intergenic 40.0%
!! GTTAGACTATGATGATGGTG+TGG - Chr7:83005855-83005874 MsG0780040825.01.T01:intron 40.0%
!!! GGTGTTTGGTTTTGATGTCT+GGG - Chr7:83005783-83005802 MsG0780040825.01.T01:intron 40.0%
!!! GTGTTTGGTTTTGATGTCTG+GGG - Chr7:83005784-83005803 MsG0780040825.01.T01:intron 40.0%
!!! TGGTGTTTGGTTTTGATGTC+TGG - Chr7:83005782-83005801 MsG0780040825.01.T01:intron 40.0%
AAAGGAAGTCGCCCACTAAT+GGG + Chr7:83007451-83007470 None:intergenic 45.0%
ACACCATTAGAGAGAGAGTG+GGG - Chr7:83006092-83006111 MsG0780040825.01.T01:intron 45.0%
ACTCCAGTACATCAAGAGTC+TGG - Chr7:83004548-83004567 MsG0780040825.01.T01:three_prime_UTR 45.0%
AGCCAGGTTAAAAGAGGTAG+AGG - Chr7:83006219-83006238 MsG0780040825.01.T01:intron 45.0%
ATCTACCGCATGGTGAAAAG+TGG + Chr7:83004469-83004488 None:intergenic 45.0%
CCAGGATCAGCTTCTATATG+AGG + Chr7:83004521-83004540 None:intergenic 45.0%
CCTCATATAGAAGCTGATCC+TGG - Chr7:83004518-83004537 MsG0780040825.01.T01:three_prime_UTR 45.0%
CTTAGGATCCTCCACTATGA+TGG - Chr7:83005634-83005653 MsG0780040825.01.T01:intron 45.0%
CTTCTTACAACGGCATCTAC+GGG + Chr7:83006183-83006202 None:intergenic 45.0%
GACACCATTAGAGAGAGAGT+GGG - Chr7:83006091-83006110 MsG0780040825.01.T01:intron 45.0%
GCAGCTAAAAATCTACCGCA+TGG + Chr7:83004479-83004498 None:intergenic 45.0%
GTCTCCTCAGGAAAGTAACT+TGG + Chr7:83005685-83005704 None:intergenic 45.0%
TCCGCAGCTCATACATAACT+TGG + Chr7:83004613-83004632 None:intergenic 45.0%
TCTACCGCATGGTGAAAAGT+GGG + Chr7:83004468-83004487 None:intergenic 45.0%
TGACACCATTAGAGAGAGAG+TGG - Chr7:83006090-83006109 MsG0780040825.01.T01:intron 45.0%
TGCTGAAGATGAGGTCAATG+TGG - Chr7:83005473-83005492 MsG0780040825.01.T01:intron 45.0%
TTGACCTCATCTTCAGCACT+CGG + Chr7:83005471-83005490 None:intergenic 45.0%
TTTACTGGGGGAGATCAATG+TGG - Chr7:83005550-83005569 MsG0780040825.01.T01:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + Chr7:83006359-83006378 None:intergenic 45.0%
! AGGAAGCATACATGCAACAC+AGG + Chr7:83004501-83004520 None:intergenic 45.0%
! AGGAGTATGTGCTCAGATGT+AGG + Chr7:83005185-83005204 None:intergenic 45.0%
! ATATAGAGCGTGCTGACAGT+AGG + Chr7:83006696-83006715 None:intergenic 45.0%
! ATGCTTTCATCCTTTTCCCG+GGG - Chr7:83005497-83005516 MsG0780040825.01.T01:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + Chr7:83006360-83006379 None:intergenic 45.0%
! CATGCTTTCATCCTTTTCCC+GGG - Chr7:83005496-83005515 MsG0780040825.01.T01:intron 45.0%
! GCATGCTTTCATCCTTTTCC+CGG - Chr7:83005495-83005514 MsG0780040825.01.T01:intron 45.0%
! TGGACCAAGTTACTTTCCTG+AGG - Chr7:83005678-83005697 MsG0780040825.01.T01:intron 45.0%
!! CGGGCTAGTTTATGGAACAA+AGG - Chr7:83005521-83005540 MsG0780040825.01.T01:intron 45.0%
!!! AAAATTATTTTAAAAAGTAA+TGG + Chr7:83004718-83004737 None:intergenic 5.0%
AAGGAGGAAAGAGGAGGGTT+GGG + Chr7:83007424-83007443 None:intergenic 50.0%
AGAACCATGACGTCGACCAT+AGG + Chr7:83005210-83005229 None:intergenic 50.0%
AGATCAAATGGAGGAGAGCC+AGG - Chr7:83006203-83006222 MsG0780040825.01.T01:intron 50.0%
AGCAAGACATAAAGGAGGCC+AGG + Chr7:83006959-83006978 None:intergenic 50.0%
ATGGGCATGAAGGAGGAAAG+AGG + Chr7:83007433-83007452 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - Chr7:83006358-83006377 MsG0780040825.01.T01:CDS 50.0%
CCTCCTTCATGCCCATTAGT+GGG - Chr7:83007437-83007456 MsG0780040825.01.T01:CDS 50.0%
CTACCCCACTCTCTCTCTAA+TGG + Chr7:83006098-83006117 None:intergenic 50.0%
CTCTCAACCAAGTGACCTCT+CGG + Chr7:83006603-83006622 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG + Chr7:83006355-83006374 None:intergenic 50.0%
GAAAGGAAGTCGCCCACTAA+TGG + Chr7:83007452-83007471 None:intergenic 50.0%
GAGCACAGGCAACAAAGAAC+TGG - Chr7:83007280-83007299 MsG0780040825.01.T01:intron 50.0%
GAGCACATACTCCTTGCCTA+TGG - Chr7:83005191-83005210 MsG0780040825.01.T01:intron 50.0%
GAGGAGAGCCAGGTTAAAAG+AGG - Chr7:83006213-83006232 MsG0780040825.01.T01:intron 50.0%
GAGTTCTCTCTTCAACCTCG+AGG - Chr7:83006620-83006639 MsG0780040825.01.T01:intron 50.0%
GCAAGACATAAAGGAGGCCA+GGG + Chr7:83006958-83006977 None:intergenic 50.0%
GCATGAAGGAGGAAAGAGGA+GGG + Chr7:83007429-83007448 None:intergenic 50.0%
GCGGATATATTCCCTTGAGG+AGG - Chr7:83004628-83004647 MsG0780040825.01.T01:three_prime_UTR 50.0%
GCTGATATTGGATGCCGAGT+TGG + Chr7:83004587-83004606 None:intergenic 50.0%
GCTGCGGATATATTCCCTTG+AGG - Chr7:83004625-83004644 MsG0780040825.01.T01:three_prime_UTR 50.0%
GTACGGACACAAGCAGAGAA+GGG + Chr7:83004878-83004897 None:intergenic 50.0%
TCCTCCTTCATGCCCATTAG+TGG - Chr7:83007436-83007455 MsG0780040825.01.T01:CDS 50.0%
TCTCAACCAAGTGACCTCTC+GGG + Chr7:83006602-83006621 None:intergenic 50.0%
TTGGAGTCAGTCAGTGAGCA+AGG - Chr7:83005710-83005729 MsG0780040825.01.T01:intron 50.0%
TTTCCTGAGGAGACCATCGT+TGG - Chr7:83005691-83005710 MsG0780040825.01.T01:intron 50.0%
! AGGTACTCGGTTTGAGACTC+GGG - Chr7:83006640-83006659 MsG0780040825.01.T01:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + Chr7:83006361-83006380 None:intergenic 50.0%
! CTCTTCAACCTCGAGGTACT+CGG - Chr7:83006627-83006646 MsG0780040825.01.T01:intron 50.0%
! GAGGTACTCGGTTTGAGACT+CGG - Chr7:83006639-83006658 MsG0780040825.01.T01:intron 50.0%
! TCACTGACTGACTCCAACGA+TGG + Chr7:83005707-83005726 None:intergenic 50.0%
! TGCTTTCATCCTTTTCCCGG+GGG - Chr7:83005498-83005517 MsG0780040825.01.T01:intron 50.0%
AAAGGAGGCCAGGGTGCAAA+AGG + Chr7:83006949-83006968 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + Chr7:83006347-83006366 None:intergenic 55.0%
ACTCCAACGATGGTCTCCTC+AGG + Chr7:83005697-83005716 None:intergenic 55.0%
AGGAGGAAAGAGGAGGGTTG+GGG + Chr7:83007423-83007442 None:intergenic 55.0%
AGGAGGGTTGGGGGAGTAAA+AGG + Chr7:83007413-83007432 None:intergenic 55.0%
ATGGTGCTCACCCGGTGAAT+GGG - Chr7:83005653-83005672 MsG0780040825.01.T01:intron 55.0%
ATGTAGCCGACCCCACTTAG+TGG - Chr7:83006346-83006365 MsG0780040825.01.T01:CDS 55.0%
CATCAGCGGAAACAGCTGCA+TGG + Chr7:83007222-83007241 None:intergenic 55.0%
CATGACGTCGACCATAGGCA+AGG + Chr7:83005205-83005224 None:intergenic 55.0%
CGACCCCACTTAGTGGGATA+AGG - Chr7:83006353-83006372 MsG0780040825.01.T01:CDS 55.0%
CTCAACCAAGTGACCTCTCG+GGG + Chr7:83006601-83006620 None:intergenic 55.0%
CTTGCCTATGGTCGACGTCA+TGG - Chr7:83005203-83005222 MsG0780040825.01.T01:intron 55.0%
CTTGGTCCAGTCCCATTCAC+CGG + Chr7:83005667-83005686 None:intergenic 55.0%
GAAGGAGGAAAGAGGAGGGT+TGG + Chr7:83007425-83007444 None:intergenic 55.0%
GCCTTACGTTGCCTCCTCAA+GGG + Chr7:83004642-83004661 None:intergenic 55.0%
GGAGGGTTGGGGGAGTAAAA+GGG + Chr7:83007412-83007431 None:intergenic 55.0%
GGCATGAAGGAGGAAAGAGG+AGG + Chr7:83007430-83007449 None:intergenic 55.0%
GGTACGGACACAAGCAGAGA+AGG + Chr7:83004879-83004898 None:intergenic 55.0%
GGTGAGCACCATCATAGTGG+AGG + Chr7:83005645-83005664 None:intergenic 55.0%
GTCTCAAACCGAGTACCTCG+AGG + Chr7:83006638-83006657 None:intergenic 55.0%
TATGCTTGTCTGTCCCCGAG+AGG - Chr7:83006585-83006604 MsG0780040825.01.T01:CDS 55.0%
TCATATCCAGGGCTGAGCAC+AGG - Chr7:83007266-83007285 MsG0780040825.01.T01:CDS 55.0%
TCCCTTGAGGAGGCAACGTA+AGG - Chr7:83004638-83004657 MsG0780040825.01.T01:three_prime_UTR 55.0%
TGCCTTACGTTGCCTCCTCA+AGG + Chr7:83004643-83004662 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG - Chr7:83006347-83006366 MsG0780040825.01.T01:CDS 55.0%
TTGGTCCAGTCCCATTCACC+GGG + Chr7:83005666-83005685 None:intergenic 55.0%
! CCACTATGATGGTGCTCACC+CGG - Chr7:83005645-83005664 MsG0780040825.01.T01:intron 55.0%
! CCCACTAATGGGCATGAAGG+AGG + Chr7:83007440-83007459 None:intergenic 55.0%
! GTGGTAAGCCTTTTGCACCC+TGG - Chr7:83006938-83006957 MsG0780040825.01.T01:intron 55.0%
! TCGCCCACTAATGGGCATGA+AGG + Chr7:83007443-83007462 None:intergenic 55.0%
! TTTCATCCTTTTCCCGGGGG+CGG - Chr7:83005501-83005520 MsG0780040825.01.T01:intron 55.0%
!! GCTTCCGAGTGCTGAAGATG+AGG - Chr7:83005464-83005483 MsG0780040825.01.T01:intron 55.0%
!! GGTGCCCACTTTTCACCATG+CGG - Chr7:83004461-83004480 MsG0780040825.01.T01:three_prime_UTR 55.0%
!! TTGGGTTGGTGCTTGCGTCT+CGG - Chr7:83004762-83004781 MsG0780040825.01.T01:three_prime_UTR 55.0%
CCGGGTGAGCACCATCATAG+TGG + Chr7:83005648-83005667 None:intergenic 60.0%
GATGGTGCTCACCCGGTGAA+TGG - Chr7:83005652-83005671 MsG0780040825.01.T01:intron 60.0%
GGAGGAAAGAGGAGGGTTGG+GGG + Chr7:83007422-83007441 None:intergenic 60.0%
TCCATAAACTAGCCCGCCCC+CGG + Chr7:83005517-83005536 None:intergenic 60.0%
TCTGTCCCCGAGAGGTCACT+TGG - Chr7:83006593-83006612 MsG0780040825.01.T01:CDS 60.0%
TTGTTGCCTGTGCTCAGCCC+TGG + Chr7:83007275-83007294 None:intergenic 60.0%
! TTCATCCTTTTCCCGGGGGC+GGG - Chr7:83005502-83005521 MsG0780040825.01.T01:intron 60.0%
!! TGGGTTGGTGCTTGCGTCTC+GGG - Chr7:83004763-83004782 MsG0780040825.01.T01:three_prime_UTR 60.0%
CCATAAACTAGCCCGCCCCC+GGG + Chr7:83005516-83005535 None:intergenic 65.0%
GCTCACCCGGTGAATGGGAC+TGG - Chr7:83005658-83005677 MsG0780040825.01.T01:intron 65.0%
ACTAGCCCGCCCCCGGGAAA+AGG + Chr7:83005510-83005529 None:intergenic 70.0%
!! CCCGGGGGCGGGCTAGTTTA+TGG - Chr7:83005513-83005532 MsG0780040825.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 83004419 83007626 83004419 ID=MsG0780040825.01;Name=MsG0780040825.01
Chr7 mRNA 83004419 83007626 83004419 ID=MsG0780040825.01.T01;Parent=MsG0780040825.01;Name=MsG0780040825.01.T01;_AED=0.43;_eAED=0.43;_QI=0|0.8|0.83|1|0.6|0.5|6|467|170
Chr7 exon 83004419 83004818 83004419 ID=MsG0780040825.01.T01:exon:38564;Parent=MsG0780040825.01.T01
Chr7 exon 83005105 83005166 83005105 ID=MsG0780040825.01.T01:exon:38563;Parent=MsG0780040825.01.T01
Chr7 exon 83006314 83006420 83006314 ID=MsG0780040825.01.T01:exon:38562;Parent=MsG0780040825.01.T01
Chr7 exon 83006503 83006616 83006503 ID=MsG0780040825.01.T01:exon:38561;Parent=MsG0780040825.01.T01
Chr7 exon 83007225 83007285 83007225 ID=MsG0780040825.01.T01:exon:38560;Parent=MsG0780040825.01.T01
Chr7 exon 83007391 83007626 83007391 ID=MsG0780040825.01.T01:exon:38559;Parent=MsG0780040825.01.T01
Chr7 CDS 83007391 83007626 83007391 ID=MsG0780040825.01.T01:cds;Parent=MsG0780040825.01.T01
Chr7 CDS 83007225 83007285 83007225 ID=MsG0780040825.01.T01:cds;Parent=MsG0780040825.01.T01
Chr7 CDS 83006503 83006616 83006503 ID=MsG0780040825.01.T01:cds;Parent=MsG0780040825.01.T01
Chr7 CDS 83006319 83006420 83006319 ID=MsG0780040825.01.T01:cds;Parent=MsG0780040825.01.T01
Chr7 three_prime_UTR 83006314 83006318 83006314 ID=MsG0780040825.01.T01:three_prime_utr;Parent=MsG0780040825.01.T01
Chr7 three_prime_UTR 83005105 83005166 83005105 ID=MsG0780040825.01.T01:three_prime_utr;Parent=MsG0780040825.01.T01
Chr7 three_prime_UTR 83004419 83004818 83004419 ID=MsG0780040825.01.T01:three_prime_utr;Parent=MsG0780040825.01.T01
Gene Sequence

>MsG0780040825.01.T01

ATGTTTTATTTCACAACCGTGTTTGCACTTTGCAGTGAAATGGGTGCCCACTTTTCACCATGCGGTAGATTTTTAGCTGCCTGTGTTGCATGTATGCTTCCTCATATAGAAGCTGATCCTGGATTACAAACTCCAGTACATCAAGAGTCTGGTATTGCAACATCACCAACTCGGCATCCAATATCAGCACACCAAGTTATGTATGAGCTGCGGATATATTCCCTTGAGGAGGCAACATTTGGGTTGGTGCTTGCGTCTCGGGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAGGTATATAGAGTTTCAGATATGGAACTTGTTAGGGTGCTTCCGAGTGCTGAAGATGAGGTCAATGTGGCATGCTTTCATCCTTTTCCCGGGGGCGGGCTAGTTTATGGAACAAAGGAAGGAAAGCTTAGGATCCTCCACTATGATGGTGCTCACCCGGTGAATGGGACTGGACCAAGTTACTTTCCTGAGGAGACCATCGTTGGAGTCAGTCAGTGA

Protein sequence

>MsG0780040825.01.T01

MFYFTTVFALCSEMGAHFSPCGRFLAACVACMLPHIEADPGLQTPVHQESGIATSPTRHPISAHQVMYELRIYSLEEATFGLVLASRAIRAAHCLTSIQVYRVSDMELVRVLPSAEDEVNVACFHPFPGGGLVYGTKEGKLRILHYDGAHPVNGTGPSYFPEETIVGVSQ*