AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048848.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048848.01.T01 MTR_1g114320 95.484 310 9 1 14 323 11 315 0.0 570
MsG0080048848.01.T01 MTR_6g079660 45.361 291 121 5 1 253 1 291 4.79e-65 209
MsG0080048848.01.T01 MTR_3g068005 37.255 255 116 9 16 244 7 243 4.32e-42 150
MsG0080048848.01.T01 MTR_3g083480 46.012 163 66 4 143 301 189 333 6.01e-40 144
MsG0080048848.01.T01 MTR_4g064570 32.281 285 148 9 16 281 12 270 8.19e-37 135
MsG0080048848.01.T01 MTR_2g097620 32.143 280 160 10 16 281 14 277 8.88e-37 135
MsG0080048848.01.T01 MTR_5g080350 30.282 284 154 9 17 272 5 272 5.85e-32 123
MsG0080048848.01.T01 MTR_3g072630 30.483 269 129 11 14 243 18 267 1.08e-31 121
MsG0080048848.01.T01 MTR_1g114620 43.671 158 76 5 94 250 172 317 1.81e-31 120
MsG0080048848.01.T01 MTR_3g072630 30.483 269 129 11 14 243 18 267 2.35e-31 120
MsG0080048848.01.T01 MTR_5g088720 49.505 101 48 2 142 242 148 245 3.05e-31 120
MsG0080048848.01.T01 MTR_5g088720 49.505 101 48 2 142 242 153 250 3.42e-31 120
MsG0080048848.01.T01 MTR_5g088720 49.505 101 48 2 142 242 194 291 4.37e-31 120
MsG0080048848.01.T01 MTR_7g074170 46.154 117 63 0 141 257 289 405 9.52e-31 121
MsG0080048848.01.T01 MTR_1g051105 43.165 139 70 3 142 280 107 236 2.69e-30 115
MsG0080048848.01.T01 MTR_4g110100 47.059 119 60 1 133 251 299 414 2.12e-28 114
MsG0080048848.01.T01 MTR_0067s0100 45.098 102 52 2 141 242 138 235 1.26e-26 106
MsG0080048848.01.T01 MTR_6g032960 39.370 127 69 2 143 267 186 306 2.59e-26 106
MsG0080048848.01.T01 MTR_6g016350 43.902 123 69 0 127 249 241 363 9.36e-24 100
MsG0080048848.01.T01 MTR_1g014710 39.623 106 62 1 147 250 181 286 4.56e-22 94.7
MsG0080048848.01.T01 MTR_3g088080 46.575 73 36 1 171 243 15 84 4.35e-21 86.3
MsG0080048848.01.T01 MTR_2g007340 56.923 65 27 1 177 241 182 245 7.32e-21 91.7
MsG0080048848.01.T01 MTR_5g041330 37.374 99 56 2 149 247 63 155 1.87e-19 85.5
MsG0080048848.01.T01 MTR_5g041310 38.384 99 55 2 149 247 73 165 2.40e-19 85.5
MsG0080048848.01.T01 MTR_3g025510 28.571 119 75 3 129 241 35 149 8.40e-14 68.6
MsG0080048848.01.T01 MTR_2g061790 43.478 69 39 0 197 265 109 177 9.13e-13 67.0
MsG0080048848.01.T01 MTR_6g087150 33.708 89 58 1 158 245 80 168 4.97e-11 63.5
MsG0080048848.01.T01 MTR_3g031000 38.356 73 36 2 171 243 279 342 6.29e-11 63.2
MsG0080048848.01.T01 MTR_7g073200 32.110 109 68 2 154 261 64 167 6.45e-11 60.8
MsG0080048848.01.T01 MTR_1g103050 31.776 107 58 3 138 238 59 156 7.49e-11 60.5
MsG0080048848.01.T01 MTR_2g076290 26.994 163 95 5 93 243 180 330 8.93e-11 62.4
MsG0080048848.01.T01 MTR_2g078440 42.308 52 30 0 193 244 249 300 9.62e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048848.01.T01 AT3G19950 53.333 300 99 9 1 270 1 289 1.39e-94 284
MsG0080048848.01.T01 AT3G19950 53.333 300 99 9 1 270 59 347 1.81e-94 285
MsG0080048848.01.T01 AT3G19950 53.333 300 99 9 1 270 59 347 1.81e-94 285
MsG0080048848.01.T01 AT1G55530 60.656 122 39 3 139 257 170 285 2.03e-44 155
MsG0080048848.01.T01 AT1G55530 60.656 122 39 3 139 257 170 285 2.03e-44 155
MsG0080048848.01.T01 AT3G13430 37.024 289 132 10 16 259 9 292 2.84e-44 154
MsG0080048848.01.T01 AT3G13430 37.024 289 132 10 16 259 9 292 2.84e-44 154
MsG0080048848.01.T01 AT3G13430 37.024 289 132 10 16 259 9 292 2.84e-44 154
MsG0080048848.01.T01 AT3G13430 37.024 289 132 10 16 259 9 292 2.84e-44 154
MsG0080048848.01.T01 AT1G55530 61.017 118 38 2 142 257 141 252 8.44e-44 153
MsG0080048848.01.T01 AT5G56340 45.810 179 73 5 128 301 204 363 2.82e-40 145
MsG0080048848.01.T01 AT4G26400 51.327 113 49 1 141 253 191 297 5.06e-36 133
MsG0080048848.01.T01 AT4G26400 51.327 113 49 1 141 253 191 297 5.06e-36 133
MsG0080048848.01.T01 AT3G46620 30.314 287 160 8 16 281 31 298 2.06e-35 132
MsG0080048848.01.T01 AT2G40830 34.167 240 133 7 17 243 9 236 2.41e-35 131
MsG0080048848.01.T01 AT2G40830 34.167 240 133 7 17 243 9 236 2.41e-35 131
MsG0080048848.01.T01 AT2G40830 34.167 240 133 7 17 243 9 236 2.41e-35 131
MsG0080048848.01.T01 AT2G40830 34.167 240 133 7 17 243 9 236 2.41e-35 131
MsG0080048848.01.T01 AT3G56580 35.146 239 126 7 17 242 9 231 1.34e-33 126
MsG0080048848.01.T01 AT3G56580 35.146 239 126 7 17 242 9 231 1.34e-33 126
MsG0080048848.01.T01 AT3G56580 35.146 239 126 7 17 242 9 231 1.34e-33 126
MsG0080048848.01.T01 AT5G59550 41.290 155 83 4 125 272 122 275 3.67e-33 127
MsG0080048848.01.T01 AT5G59550 41.290 155 83 4 125 272 227 380 1.26e-32 127
MsG0080048848.01.T01 AT2G39720 31.727 249 146 8 16 245 6 249 7.74e-32 123
MsG0080048848.01.T01 AT2G39720 31.727 249 146 8 16 245 6 249 7.74e-32 123
MsG0080048848.01.T01 AT5G01980 47.368 114 59 1 141 254 295 407 2.79e-31 123
MsG0080048848.01.T01 AT1G60360 30.556 288 148 11 3 253 8 280 4.12e-31 119
MsG0080048848.01.T01 AT5G15820 48.039 102 53 0 152 253 246 347 2.09e-28 112
MsG0080048848.01.T01 AT5G08139 45.714 105 47 2 152 251 264 363 1.63e-25 105
MsG0080048848.01.T01 AT3G02340 40.517 116 68 1 153 267 291 406 3.84e-25 104
MsG0080048848.01.T01 AT3G02340 40.517 116 68 1 153 267 291 406 3.84e-25 104
MsG0080048848.01.T01 AT5G20910 48.810 84 41 1 169 250 200 283 1.94e-23 98.6
MsG0080048848.01.T01 AT3G10815 45.745 94 49 2 151 244 77 168 8.09e-22 91.7
MsG0080048848.01.T01 AT5G64920 43.802 121 62 3 138 253 194 313 7.72e-21 91.7
MsG0080048848.01.T01 AT1G26800 37.383 107 60 2 150 256 73 172 1.01e-19 86.3
MsG0080048848.01.T01 AT5G60820 39.806 103 56 3 145 244 320 419 5.34e-18 84.7
MsG0080048848.01.T01 AT1G68180 44.595 74 40 1 168 241 110 182 1.12e-17 81.3
MsG0080048848.01.T01 AT3G60080 43.243 74 35 1 177 243 142 215 1.72e-16 79.0
MsG0080048848.01.T01 AT1G14200 39.506 81 48 1 162 242 75 154 4.77e-16 75.5
MsG0080048848.01.T01 AT2G44330 30.233 129 78 3 121 243 20 142 7.77e-15 72.0
MsG0080048848.01.T01 AT1G18770 39.474 76 45 1 167 242 30 104 7.46e-14 67.4
MsG0080048848.01.T01 AT2G29840 37.895 95 57 2 152 245 199 292 1.31e-13 70.5
MsG0080048848.01.T01 AT5G02750 49.020 51 26 0 196 246 213 263 1.45e-13 70.5
MsG0080048848.01.T01 AT2G03000 40.845 71 36 2 171 241 461 525 1.78e-12 68.6
MsG0080048848.01.T01 AT1G18760 34.940 83 52 1 163 245 143 223 2.40e-12 65.9
MsG0080048848.01.T01 AT5G52140 30.097 103 61 3 141 241 185 278 2.64e-11 63.5

Find 122 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAATCTGAACCAGGGTTT+CGG 0.222566 contig489end:-9386 MsG0080048848.01.T01:CDS
AGAAAACCTTGGAAGCAAAT+TGG 0.253434 contig489end:+9669 None:intergenic
CGGAAAATCACGTTAGGGTT+AGG 0.253624 contig489end:+9618 None:intergenic
TGAATCTGAACCAGGGTTTC+GGG 0.260029 contig489end:-9385 MsG0080048848.01.T01:CDS
TTAATTCTGCTTCCGTTTCC+AGG 0.291944 contig489end:-9515 MsG0080048848.01.T01:CDS
TGGAAATAGGCAAGAAGATT+TGG 0.294855 contig489end:-8833 MsG0080048848.01.T01:CDS
GACTCTGGTGAAAGGGGATT+TGG 0.316145 contig489end:-8853 MsG0080048848.01.T01:CDS
GAGTTACGAGTCATGTCTTC+TGG 0.323312 contig489end:-9789 None:intergenic
GTGAAAGGGGATTTGGAAAT+AGG 0.323534 contig489end:-8846 MsG0080048848.01.T01:CDS
ATATCTCTGCGGTATCCTTT+TGG 0.328546 contig489end:-8895 MsG0080048848.01.T01:CDS
TGGAAACGGAAGCAGAATTA+AGG 0.337608 contig489end:+9517 None:intergenic
GGCAATTCATGTCGACAAAC+AGG 0.344933 contig489end:+9075 None:intergenic
ATCGGAATCGGGTCGGGTCC+TGG 0.349609 contig489end:+9497 None:intergenic
GGCGATTACTTCCTCGGTGC+TGG 0.350083 contig489end:-9348 MsG0080048848.01.T01:CDS
GGTGGTGGTAGCAGTGGTGG+TGG 0.356931 contig489end:-8952 MsG0080048848.01.T01:CDS
TTTCGGGTTCCCTCTAACCT+TGG 0.381086 contig489end:-9369 MsG0080048848.01.T01:CDS
GGTGGTAGCAGTGGTGGTGG+AGG 0.383648 contig489end:-8949 MsG0080048848.01.T01:CDS
GGCGATGGCGGTGGTGGCGG+TGG 0.385441 contig489end:-9765 MsG0080048848.01.T01:CDS
TTCTGCCCAATTTGCTTCCA+AGG 0.391229 contig489end:-9675 MsG0080048848.01.T01:CDS
TGCTCAGGACTCTGGTGAAA+GGG 0.401420 contig489end:-8860 MsG0080048848.01.T01:CDS
ATGATGATTGCTTGCTTCCA+TGG 0.401701 contig489end:-9119 MsG0080048848.01.T01:CDS
GAAAACCTTGGAAGCAAATT+GGG 0.402814 contig489end:+9670 None:intergenic
GGAAAATCACGTTAGGGTTA+GGG 0.416687 contig489end:+9619 None:intergenic
GGTGGTGGTGGTAGCAGTGG+TGG 0.420491 contig489end:-8955 MsG0080048848.01.T01:CDS
AGGGATGGTAACGGTGGCGA+TGG 0.423838 contig489end:-9021 MsG0080048848.01.T01:CDS
GATGGCGGTGGTGGCGGTGG+AGG 0.427865 contig489end:-9762 MsG0080048848.01.T01:CDS
GGCGGTGTGCCGTAACGATT+CGG 0.428230 contig489end:+9288 None:intergenic
TGGTTCAGATGACTCTGCTC+AGG 0.429490 contig489end:-8875 MsG0080048848.01.T01:CDS
GTTAGGGTTAGGGTTAGGTT+CGG 0.433893 contig489end:+9629 None:intergenic
GGTAGCAGTGGTGGTGGAGG+AGG 0.436996 contig489end:-8946 MsG0080048848.01.T01:CDS
TCTGGCGGCGATGGCGGTGG+TGG 0.437691 contig489end:-9771 MsG0080048848.01.T01:CDS
TTAGGGTTAGGGTTAGGTTC+GGG 0.443732 contig489end:+9630 None:intergenic
GAAGGGATGGAATGGAAATT+CGG 0.445340 contig489end:+9557 None:intergenic
CATCCTTCTGAATCTGAACC+AGG 0.445750 contig489end:-9393 MsG0080048848.01.T01:CDS
AACAGTACCGTTGGTGGTGG+TGG 0.448041 contig489end:-8976 MsG0080048848.01.T01:CDS
GGCGGCGATGGCGGTGGTGG+CGG 0.448894 contig489end:-9768 MsG0080048848.01.T01:CDS
AACCTTGGCGATTACTTCCT+CGG 0.449887 contig489end:-9354 MsG0080048848.01.T01:CDS
GAAGTAATCGCCAAGGTTAG+AGG 0.450993 contig489end:+9359 None:intergenic
ATGATGCTGATTATGAGAAC+CGG 0.453554 contig489end:-9047 MsG0080048848.01.T01:CDS
AAGCAGAATTAAGGAGTAAT+GGG 0.453884 contig489end:+9526 None:intergenic
GTAACGGTGGCGATGGGTTG+AGG 0.457788 contig489end:-9014 MsG0080048848.01.T01:CDS
GAATCAATGTGCTGTTTGTC+AGG 0.459494 contig489end:-9196 MsG0080048848.01.T01:CDS
ATCGGGTCGGGTCCTGGAAA+CGG 0.461334 contig489end:+9503 None:intergenic
ATCACGTTAGGGTTAGGGTT+AGG 0.462218 contig489end:+9624 None:intergenic
TTGAAGCGGAAAATCACGTT+AGG 0.465974 contig489end:+9612 None:intergenic
GGGGTCGAAACTATCGGAAT+CGG 0.469880 contig489end:+9485 None:intergenic
TGTCAGGATGAGTTTGAGAA+AGG 0.474239 contig489end:-9180 MsG0080048848.01.T01:CDS
GATGGGTTGAGGTCTGTTGT+TGG 0.484013 contig489end:-9003 MsG0080048848.01.T01:CDS
TGGAAATTCGGAATCTGAAT+CGG 0.491233 contig489end:+9569 None:intergenic
GAGAATGATCCGAATCGTTA+CGG 0.491542 contig489end:-9297 MsG0080048848.01.T01:CDS
GAGTAATGGGAGAAGAGCGA+AGG 0.493838 contig489end:+9539 None:intergenic
GATGACTCTGCTCAGGACTC+TGG 0.494585 contig489end:-8868 MsG0080048848.01.T01:CDS
GTCATGTCTTCTGGCGGCGA+TGG 0.494693 contig489end:-9780 MsG0080048848.01.T01:CDS
TTCAGAATCATCGTCGGTGC+AGG 0.495095 contig489end:+9701 None:intergenic
TGGAAGCAAATTGGGCAGAA+AGG 0.499109 contig489end:+9678 None:intergenic
CTGCTCAGGACTCTGGTGAA+AGG 0.499574 contig489end:-8861 MsG0080048848.01.T01:CDS
GAAGCAGAATTAAGGAGTAA+TGG 0.500388 contig489end:+9525 None:intergenic
ATGGGAGAAGAGCGAAGGGA+TGG 0.502378 contig489end:+9544 None:intergenic
TCTTCTGGCGGCGATGGCGG+TGG 0.504625 contig489end:-9774 MsG0080048848.01.T01:CDS
CACACCGCCGGCGTCGAAAG+AGG 0.509979 contig489end:-9274 MsG0080048848.01.T01:CDS
GAAACTATCGGAATCGGGTC+GGG 0.511848 contig489end:+9491 None:intergenic
AGTAATGGGAGAAGAGCGAA+GGG 0.512255 contig489end:+9540 None:intergenic
TCATGATAAACATGCTTACA+AGG 0.513615 contig489end:+9138 None:intergenic
GCAGAGTCATCTGAACCAAA+AGG 0.515275 contig489end:+8880 None:intergenic
CACATTCTTCGAGAAAACCT+TGG 0.516574 contig489end:+9658 None:intergenic
AGTACCGTTGGTGGTGGTGG+TGG 0.516728 contig489end:-8973 MsG0080048848.01.T01:CDS
TGATGATGCGTTGTTGAACT+CGG 0.517659 contig489end:-9223 MsG0080048848.01.T01:CDS
GAATTGAATGTTTGCACCGT+CGG 0.523561 contig489end:+9425 None:intergenic
AGCGAAGGGGTCGAAACTAT+CGG 0.525966 contig489end:+9479 None:intergenic
TCTTCTGCCACGTGTGCAGT+CGG 0.526650 contig489end:-9731 MsG0080048848.01.T01:CDS
TGTTTGCACCGTCGGCGTGA+AGG 0.527557 contig489end:+9433 None:intergenic
AGAAGAGCGAAGGGATGGAA+TGG 0.530439 contig489end:+9549 None:intergenic
CGGAGGAATGATCGTGATGA+TGG 0.542624 contig489end:+9589 None:intergenic
GGGATGGTAACGGTGGCGAT+GGG 0.544115 contig489end:-9020 MsG0080048848.01.T01:CDS
GGGTCGAAACTATCGGAATC+GGG 0.544986 contig489end:+9486 None:intergenic
ATTCTGAAAGTTCTGTGGAC+AGG 0.545677 contig489end:+8916 None:intergenic
ATGTCTTCTGGCGGCGATGG+CGG 0.545998 contig489end:-9777 MsG0080048848.01.T01:CDS
CTGATTATGAGAACCGGGGT+AGG 0.547933 contig489end:-9041 MsG0080048848.01.T01:CDS
TATGAGAACCGGGGTAGGGA+TGG 0.558385 contig489end:-9036 MsG0080048848.01.T01:CDS
CGAAACTATCGGAATCGGGT+CGG 0.558631 contig489end:+9490 None:intergenic
GGTAACAGTACCGTTGGTGG+TGG 0.569307 contig489end:-8979 MsG0080048848.01.T01:CDS
ACAGCCTCTTTCGACGCCGG+CGG 0.572237 contig489end:+9270 None:intergenic
TGATTCTGAAGGAAAGCGAA+GGG 0.572754 contig489end:+9465 None:intergenic
GAATCGTTACGGCACACCGC+CGG 0.579890 contig489end:-9286 MsG0080048848.01.T01:CDS
GAGTTATGCAATTCAAGCCA+TGG 0.582250 contig489end:+9102 None:intergenic
AAGTAATCGCCAAGGTTAGA+GGG 0.588263 contig489end:+9360 None:intergenic
GCTCAGGACTCTGGTGAAAG+GGG 0.588802 contig489end:-8859 MsG0080048848.01.T01:CDS
GCAATTGATTCAGCAGCTTG+CGG 0.589049 contig489end:-9319 MsG0080048848.01.T01:CDS
GTTCAACAACGCATCATCAA+CGG 0.590877 contig489end:+9227 None:intergenic
TGATTATGAGAACCGGGGTA+GGG 0.593107 contig489end:-9040 MsG0080048848.01.T01:CDS
TTAACAGCCTCTTTCGACGC+CGG 0.593234 contig489end:+9267 None:intergenic
TGAAGCGGAAAATCACGTTA+GGG 0.593973 contig489end:+9613 None:intergenic
TTCCTTCAGAATCATCTCAA+CGG 0.596074 contig489end:-9456 MsG0080048848.01.T01:CDS
CTCAACGGCCTTCACGCCGA+CGG 0.597725 contig489end:-9441 MsG0080048848.01.T01:CDS
TCATAATCAGCATCATCAGT+AGG 0.603013 contig489end:+9054 None:intergenic
ATGATTCTGAAGGAAAGCGA+AGG 0.604871 contig489end:+9464 None:intergenic
ATCCTTCTGAATCTGAACCA+GGG 0.609564 contig489end:-9392 MsG0080048848.01.T01:CDS
CACCGTTACCATCCCTACCC+CGG 0.609569 contig489end:+9028 None:intergenic
TGATGCTGATTATGAGAACC+GGG 0.618591 contig489end:-9046 MsG0080048848.01.T01:CDS
GAGATATTCTGAAAGTTCTG+TGG 0.618924 contig489end:+8911 None:intergenic
GGCCGTTGAGATGATTCTGA+AGG 0.619045 contig489end:+9454 None:intergenic
GTTGGTGGTAACAGTACCGT+TGG 0.622508 contig489end:-8985 MsG0080048848.01.T01:CDS
TTAGAGGGAACCCGAAACCC+TGG 0.623256 contig489end:+9375 None:intergenic
TAACTCTCCGACTGCACACG+TGG 0.624454 contig489end:+9724 None:intergenic
GCAATTCATGTCGACAAACA+GGG 0.630959 contig489end:+9076 None:intergenic
GGGTTGAGGTCTGTTGTTGG+TGG 0.640822 contig489end:-9000 MsG0080048848.01.T01:CDS
GGTGGTAACAGTACCGTTGG+TGG 0.642968 contig489end:-8982 MsG0080048848.01.T01:CDS
GGCTGTTAAGAATCTTCCGA+CGG 0.643871 contig489end:-9253 MsG0080048848.01.T01:CDS
CACCGAGGAAGTAATCGCCA+AGG 0.647106 contig489end:+9352 None:intergenic
CGGGGTAGGGATGGTAACGG+TGG 0.648198 contig489end:-9027 MsG0080048848.01.T01:CDS
AACCCTGGTTCAGATTCAGA+AGG 0.650452 contig489end:+9390 None:intergenic
AAATTCGGAATCTGAATCGG+AGG 0.656689 contig489end:+9572 None:intergenic
TGAGTTTGAGAAAGGTACAC+AGG 0.657062 contig489end:-9172 MsG0080048848.01.T01:CDS
GATCGTGATGATGGTTGAAG+CGG 0.660952 contig489end:+9598 None:intergenic
GCATCATCAACGGTCACCGT+CGG 0.671989 contig489end:+9237 None:intergenic
GAAAGGTTCAGAATCATCGT+CGG 0.672533 contig489end:+9695 None:intergenic
TTACGAGTCATGTCTTCTGG+CGG 0.684570 contig489end:-9786 None:intergenic
AACCGGGGTAGGGATGGTAA+CGG 0.688725 contig489end:-9030 MsG0080048848.01.T01:CDS
GATTCTGAAGGAAAGCGAAG+GGG 0.714986 contig489end:+9466 None:intergenic
GAACTTTCAGAATATCTCTG+CGG 0.750243 contig489end:-8906 MsG0080048848.01.T01:CDS
ATTGCTCGAAGCCAGCACCG+AGG 0.759055 contig489end:+9337 None:intergenic
GATGCTGATTATGAGAACCG+GGG 0.800968 contig489end:-9045 MsG0080048848.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AAGCAGAATTAAGGAGTAAT+GGG + contig489end:9082-9101 None:intergenic 30.0%
TCATGATAAACATGCTTACA+AGG + contig489end:9470-9489 None:intergenic 30.0%
AGAAAACCTTGGAAGCAAAT+TGG + contig489end:8939-8958 None:intergenic 35.0%
GAAAACCTTGGAAGCAAATT+GGG + contig489end:8938-8957 None:intergenic 35.0%
GAACTTTCAGAATATCTCTG+CGG - contig489end:9699-9718 MsG0080048848.01.T01:CDS 35.0%
GAAGCAGAATTAAGGAGTAA+TGG + contig489end:9083-9102 None:intergenic 35.0%
TCATAATCAGCATCATCAGT+AGG + contig489end:9554-9573 None:intergenic 35.0%
TGGAAATAGGCAAGAAGATT+TGG - contig489end:9772-9791 MsG0080048848.01.T01:CDS 35.0%
TGGAAATTCGGAATCTGAAT+CGG + contig489end:9039-9058 None:intergenic 35.0%
TTCCTTCAGAATCATCTCAA+CGG - contig489end:9149-9168 MsG0080048848.01.T01:CDS 35.0%
! ATGATGCTGATTATGAGAAC+CGG - contig489end:9558-9577 MsG0080048848.01.T01:CDS 35.0%
! GAGATATTCTGAAAGTTCTG+TGG + contig489end:9697-9716 None:intergenic 35.0%
AAATTCGGAATCTGAATCGG+AGG + contig489end:9036-9055 None:intergenic 40.0%
AAGTAATCGCCAAGGTTAGA+GGG + contig489end:9248-9267 None:intergenic 40.0%
ATCCTTCTGAATCTGAACCA+GGG - contig489end:9213-9232 MsG0080048848.01.T01:CDS 40.0%
ATGATGATTGCTTGCTTCCA+TGG - contig489end:9486-9505 MsG0080048848.01.T01:CDS 40.0%
CACATTCTTCGAGAAAACCT+TGG + contig489end:8950-8969 None:intergenic 40.0%
GAAAGGTTCAGAATCATCGT+CGG + contig489end:8913-8932 None:intergenic 40.0%
GAAGGGATGGAATGGAAATT+CGG + contig489end:9051-9070 None:intergenic 40.0%
GAATTGAATGTTTGCACCGT+CGG + contig489end:9183-9202 None:intergenic 40.0%
GAGAATGATCCGAATCGTTA+CGG - contig489end:9308-9327 MsG0080048848.01.T01:CDS 40.0%
GAGTTATGCAATTCAAGCCA+TGG + contig489end:9506-9525 None:intergenic 40.0%
GCAATTCATGTCGACAAACA+GGG + contig489end:9532-9551 None:intergenic 40.0%
GGAAAATCACGTTAGGGTTA+GGG + contig489end:8989-9008 None:intergenic 40.0%
GTGAAAGGGGATTTGGAAAT+AGG - contig489end:9759-9778 MsG0080048848.01.T01:CDS 40.0%
GTTCAACAACGCATCATCAA+CGG + contig489end:9381-9400 None:intergenic 40.0%
TGAAGCGGAAAATCACGTTA+GGG + contig489end:8995-9014 None:intergenic 40.0%
TGGAAACGGAAGCAGAATTA+AGG + contig489end:9091-9110 None:intergenic 40.0%
TGTCAGGATGAGTTTGAGAA+AGG - contig489end:9425-9444 MsG0080048848.01.T01:CDS 40.0%
TTAATTCTGCTTCCGTTTCC+AGG - contig489end:9090-9109 MsG0080048848.01.T01:CDS 40.0%
TTGAAGCGGAAAATCACGTT+AGG + contig489end:8996-9015 None:intergenic 40.0%
! ATATCTCTGCGGTATCCTTT+TGG - contig489end:9710-9729 MsG0080048848.01.T01:CDS 40.0%
! ATGATTCTGAAGGAAAGCGA+AGG + contig489end:9144-9163 None:intergenic 40.0%
! ATTCTGAAAGTTCTGTGGAC+AGG + contig489end:9692-9711 None:intergenic 40.0%
! TGAGTTTGAGAAAGGTACAC+AGG - contig489end:9433-9452 MsG0080048848.01.T01:CDS 40.0%
! TGATGATGCGTTGTTGAACT+CGG - contig489end:9382-9401 MsG0080048848.01.T01:CDS 40.0%
! TGATGCTGATTATGAGAACC+GGG - contig489end:9559-9578 MsG0080048848.01.T01:CDS 40.0%
! TGATTCTGAAGGAAAGCGAA+GGG + contig489end:9143-9162 None:intergenic 40.0%
!! GAATCAATGTGCTGTTTGTC+AGG - contig489end:9409-9428 MsG0080048848.01.T01:CDS 40.0%
AACCCTGGTTCAGATTCAGA+AGG + contig489end:9218-9237 None:intergenic 45.0%
AACCTTGGCGATTACTTCCT+CGG - contig489end:9251-9270 MsG0080048848.01.T01:CDS 45.0%
ATCACGTTAGGGTTAGGGTT+AGG + contig489end:8984-9003 None:intergenic 45.0%
CATCCTTCTGAATCTGAACC+AGG - contig489end:9212-9231 MsG0080048848.01.T01:CDS 45.0%
CGGAAAATCACGTTAGGGTT+AGG + contig489end:8990-9009 None:intergenic 45.0%
CTGAATCTGAACCAGGGTTT+CGG - contig489end:9219-9238 MsG0080048848.01.T01:CDS 45.0%
GAAGTAATCGCCAAGGTTAG+AGG + contig489end:9249-9268 None:intergenic 45.0%
GCAGAGTCATCTGAACCAAA+AGG + contig489end:9728-9747 None:intergenic 45.0%
GGCAATTCATGTCGACAAAC+AGG + contig489end:9533-9552 None:intergenic 45.0%
GGCTGTTAAGAATCTTCCGA+CGG - contig489end:9352-9371 MsG0080048848.01.T01:CDS 45.0%
GTTAGGGTTAGGGTTAGGTT+CGG + contig489end:8979-8998 None:intergenic 45.0%
TGAATCTGAACCAGGGTTTC+GGG - contig489end:9220-9239 MsG0080048848.01.T01:CDS 45.0%
TGATTATGAGAACCGGGGTA+GGG - contig489end:9565-9584 MsG0080048848.01.T01:CDS 45.0%
TGGAAGCAAATTGGGCAGAA+AGG + contig489end:8930-8949 None:intergenic 45.0%
TTAGGGTTAGGGTTAGGTTC+GGG + contig489end:8978-8997 None:intergenic 45.0%
! AGTAATGGGAGAAGAGCGAA+GGG + contig489end:9068-9087 None:intergenic 45.0%
! GATGCTGATTATGAGAACCG+GGG - contig489end:9560-9579 MsG0080048848.01.T01:CDS 45.0%
! GATTCTGAAGGAAAGCGAAG+GGG + contig489end:9142-9161 None:intergenic 45.0%
! GCAATTGATTCAGCAGCTTG+CGG - contig489end:9286-9305 MsG0080048848.01.T01:CDS 45.0%
! TTCTGCCCAATTTGCTTCCA+AGG - contig489end:8930-8949 MsG0080048848.01.T01:CDS 45.0%
!! GATCGTGATGATGGTTGAAG+CGG + contig489end:9010-9029 None:intergenic 45.0%
AGAAGAGCGAAGGGATGGAA+TGG + contig489end:9059-9078 None:intergenic 50.0%
AGCGAAGGGGTCGAAACTAT+CGG + contig489end:9129-9148 None:intergenic 50.0%
CGAAACTATCGGAATCGGGT+CGG + contig489end:9118-9137 None:intergenic 50.0%
CGGAGGAATGATCGTGATGA+TGG + contig489end:9019-9038 None:intergenic 50.0%
CTGATTATGAGAACCGGGGT+AGG - contig489end:9564-9583 MsG0080048848.01.T01:CDS 50.0%
GAAACTATCGGAATCGGGTC+GGG + contig489end:9117-9136 None:intergenic 50.0%
GACTCTGGTGAAAGGGGATT+TGG - contig489end:9752-9771 MsG0080048848.01.T01:CDS 50.0%
GGCCGTTGAGATGATTCTGA+AGG + contig489end:9154-9173 None:intergenic 50.0%
GGGGTCGAAACTATCGGAAT+CGG + contig489end:9123-9142 None:intergenic 50.0%
GGGTCGAAACTATCGGAATC+GGG + contig489end:9122-9141 None:intergenic 50.0%
TGCTCAGGACTCTGGTGAAA+GGG - contig489end:9745-9764 MsG0080048848.01.T01:CDS 50.0%
TGGTTCAGATGACTCTGCTC+AGG - contig489end:9730-9749 MsG0080048848.01.T01:CDS 50.0%
TTAACAGCCTCTTTCGACGC+CGG + contig489end:9341-9360 None:intergenic 50.0%
TTCAGAATCATCGTCGGTGC+AGG + contig489end:8907-8926 None:intergenic 50.0%
! GAGTAATGGGAGAAGAGCGA+AGG + contig489end:9069-9088 None:intergenic 50.0%
!! GATGGGTTGAGGTCTGTTGT+TGG - contig489end:9602-9621 MsG0080048848.01.T01:CDS 50.0%
!! GTTGGTGGTAACAGTACCGT+TGG - contig489end:9620-9639 MsG0080048848.01.T01:CDS 50.0%
!! TTTCGGGTTCCCTCTAACCT+TGG - contig489end:9236-9255 MsG0080048848.01.T01:CDS 50.0%
AACCGGGGTAGGGATGGTAA+CGG - contig489end:9575-9594 MsG0080048848.01.T01:CDS 55.0%
ATGGGAGAAGAGCGAAGGGA+TGG + contig489end:9064-9083 None:intergenic 55.0%
CACCGAGGAAGTAATCGCCA+AGG + contig489end:9256-9275 None:intergenic 55.0%
CTGCTCAGGACTCTGGTGAA+AGG - contig489end:9744-9763 MsG0080048848.01.T01:CDS 55.0%
GATGACTCTGCTCAGGACTC+TGG - contig489end:9737-9756 MsG0080048848.01.T01:CDS 55.0%
GCATCATCAACGGTCACCGT+CGG + contig489end:9371-9390 None:intergenic 55.0%
GCTCAGGACTCTGGTGAAAG+GGG - contig489end:9746-9765 MsG0080048848.01.T01:CDS 55.0%
GGGTTGAGGTCTGTTGTTGG+TGG - contig489end:9605-9624 MsG0080048848.01.T01:CDS 55.0%
GGTGGTAACAGTACCGTTGG+TGG - contig489end:9623-9642 MsG0080048848.01.T01:CDS 55.0%
TAACTCTCCGACTGCACACG+TGG + contig489end:8884-8903 None:intergenic 55.0%
TATGAGAACCGGGGTAGGGA+TGG - contig489end:9569-9588 MsG0080048848.01.T01:CDS 55.0%
TCTTCTGCCACGTGTGCAGT+CGG - contig489end:8874-8893 MsG0080048848.01.T01:CDS 55.0%
TTAGAGGGAACCCGAAACCC+TGG + contig489end:9233-9252 None:intergenic 55.0%
! GGTAACAGTACCGTTGGTGG+TGG - contig489end:9626-9645 MsG0080048848.01.T01:CDS 55.0%
!! AACAGTACCGTTGGTGGTGG+TGG - contig489end:9629-9648 MsG0080048848.01.T01:CDS 55.0%
ACCACCACCACCACCACCAA+CGG + contig489end:9639-9658 None:intergenic 60.0%
ATCGGGTCGGGTCCTGGAAA+CGG + contig489end:9105-9124 None:intergenic 60.0%
ATGTCTTCTGGCGGCGATGG+CGG - contig489end:8828-8847 MsG0080048848.01.T01:CDS 60.0%
ATTGCTCGAAGCCAGCACCG+AGG + contig489end:9271-9290 None:intergenic 60.0%
CACCGTTACCATCCCTACCC+CGG + contig489end:9580-9599 None:intergenic 60.0%
GAATCGTTACGGCACACCGC+CGG - contig489end:9319-9338 MsG0080048848.01.T01:CDS 60.0%
GGCGGTGTGCCGTAACGATT+CGG + contig489end:9320-9339 None:intergenic 60.0%
TGTTTGCACCGTCGGCGTGA+AGG + contig489end:9175-9194 None:intergenic 60.0%
! GGCGATTACTTCCTCGGTGC+TGG - contig489end:9257-9276 MsG0080048848.01.T01:CDS 60.0%
!! AGGGATGGTAACGGTGGCGA+TGG - contig489end:9584-9603 MsG0080048848.01.T01:CDS 60.0%
!! AGTACCGTTGGTGGTGGTGG+TGG - contig489end:9632-9651 MsG0080048848.01.T01:CDS 60.0%
!! GGGATGGTAACGGTGGCGAT+GGG - contig489end:9585-9604 MsG0080048848.01.T01:CDS 60.0%
!! GTAACGGTGGCGATGGGTTG+AGG - contig489end:9591-9610 MsG0080048848.01.T01:CDS 60.0%
ACAGCCTCTTTCGACGCCGG+CGG + contig489end:9338-9357 None:intergenic 65.0%
ATCGGAATCGGGTCGGGTCC+TGG + contig489end:9111-9130 None:intergenic 65.0%
CTCAACGGCCTTCACGCCGA+CGG - contig489end:9164-9183 MsG0080048848.01.T01:CDS 65.0%
! GGTGGTGGTAGCAGTGGTGG+TGG - contig489end:9653-9672 MsG0080048848.01.T01:CDS 65.0%
!! ACCGTTGGTGGTGGTGGTGG+TGG - contig489end:9635-9654 MsG0080048848.01.T01:CDS 65.0%
!! CGGGGTAGGGATGGTAACGG+TGG - contig489end:9578-9597 MsG0080048848.01.T01:CDS 65.0%
!! GGTAGCAGTGGTGGTGGAGG+AGG - contig489end:9659-9678 MsG0080048848.01.T01:CDS 65.0%
!! GGTGGTAGCAGTGGTGGTGG+AGG - contig489end:9656-9675 MsG0080048848.01.T01:CDS 65.0%
!! GGTGGTGGTGGTAGCAGTGG+TGG - contig489end:9650-9669 MsG0080048848.01.T01:CDS 65.0%
!! GGTGGTGGTGGTGGTAGCAG+TGG - contig489end:9647-9666 MsG0080048848.01.T01:CDS 65.0%
!! GTTGGTGGTGGTGGTGGTGG+TGG - contig489end:9638-9657 MsG0080048848.01.T01:CDS 65.0%
! CACACCGCCGGCGTCGAAAG+AGG - contig489end:9331-9350 MsG0080048848.01.T01:CDS 70.0%
! TCTTCTGGCGGCGATGGCGG+TGG - contig489end:8831-8850 MsG0080048848.01.T01:CDS 70.0%
! TCTGGCGGCGATGGCGGTGG+TGG - contig489end:8834-8853 MsG0080048848.01.T01:CDS 75.0%
!! GATGGCGGTGGTGGCGGTGG+AGG - contig489end:8843-8862 MsG0080048848.01.T01:CDS 75.0%
!! GGCGGCGATGGCGGTGGTGG+CGG - contig489end:8837-8856 MsG0080048848.01.T01:CDS 80.0%
!!! GGCGATGGCGGTGGTGGCGG+TGG - contig489end:8840-8859 MsG0080048848.01.T01:CDS 80.0%
Chromosome Type Strat End Strand Name
contig489end gene 8828 9799 8828 ID=MsG0080048848.01;Name=MsG0080048848.01
contig489end mRNA 8828 9799 8828 ID=MsG0080048848.01.T01;Parent=MsG0080048848.01;Name=MsG0080048848.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|323
contig489end exon 8828 9799 8828 ID=MsG0080048848.01.T01:exon:30737;Parent=MsG0080048848.01.T01
contig489end CDS 8828 9799 8828 ID=MsG0080048848.01.T01:cds;Parent=MsG0080048848.01.T01
Gene Sequence

>MsG0080048848.01.T01

ATGTCTTCTGGCGGCGATGGCGGTGGTGGCGGTGGAGGTAAGCTTTTCTTCTGCCACGTGTGCAGTCGGAGAGTTACCTGCACCGACGATGATTCTGAACCTTTCTGCCCAATTTGCTTCCAAGGTTTTCTCGAAGAATGTGAACAACCCGAACCTAACCCTAACCCTAACGTGATTTTCCGCTTCAACCATCATCACGATCATTCCTCCGATTCAGATTCCGAATTTCCATTCCATCCCTTCGCTCTTCTCCCATTACTCCTTAATTCTGCTTCCGTTTCCAGGACCCGACCCGATTCCGATAGTTTCGACCCCTTCGCTTTCCTTCAGAATCATCTCAACGGCCTTCACGCCGACGGTGCAAACATTCAATTCGAGATCAATCATCCTTCTGAATCTGAACCAGGGTTTCGGGTTCCCTCTAACCTTGGCGATTACTTCCTCGGTGCTGGCTTCGAGCAATTGATTCAGCAGCTTGCGGAGAATGATCCGAATCGTTACGGCACACCGCCGGCGTCGAAAGAGGCTGTTAAGAATCTTCCGACGGTGACCGTTGATGATGCGTTGTTGAACTCGGAGTTGAATCAATGTGCTGTTTGTCAGGATGAGTTTGAGAAAGGTACACAGGTGAAGCAAATGCCTTGTAAGCATGTTTATCATGATGATTGCTTGCTTCCATGGCTTGAATTGCATAACTCTTGCCCTGTTTGTCGACATGAATTGCCTACTGATGATGCTGATTATGAGAACCGGGGTAGGGATGGTAACGGTGGCGATGGGTTGAGGTCTGTTGTTGGTGGTAACAGTACCGTTGGTGGTGGTGGTGGTGGTGGTAGCAGTGGTGGTGGAGGAGGAAATAGACCTGTCCACAGAACTTTCAGAATATCTCTGCGGTATCCTTTTGGTTCAGATGACTCTGCTCAGGACTCTGGTGAAAGGGGATTTGGAAATAGGCAAGAAGATTTGGATTGA
Protein sequence

>MsG0080048848.01.T01

MSSGGDGGGGGGGKLFFCHVCSRRVTCTDDDSEPFCPICFQGFLEECEQPEPNPNPNVIFRFNHHHDHSSDSDSEFPFHPFALLPLLLNSASVSRTRPDSDSFDPFAFLQNHLNGLHADGANIQFEINHPSESEPGFRVPSNLGDYFLGAGFEQLIQQLAENDPNRYGTPPASKEAVKNLPTVTVDDALLNSELNQCAVCQDEFEKGTQVKQMPCKHVYHDDCLLPWLELHNSCPVCRHELPTDDADYENRGRDGNGGDGLRSVVGGNSTVGGGGGGGSSGGGGGNRPVHRTFRISLRYPFGSDDSAQDSGERGFGNRQEDLD*