AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035741.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035741.01.T01 MTR_6g087150 96.552 377 12 1 1 377 1 376 0.0 744
MsG0680035741.01.T01 MTR_3g110190 44.290 359 150 10 40 375 10 341 8.20e-82 254
MsG0680035741.01.T01 MTR_5g066250 34.591 318 162 10 38 317 80 389 2.00e-44 159
MsG0680035741.01.T01 MTR_3g100400 32.033 359 185 9 25 325 54 411 6.84e-40 146
MsG0680035741.01.T01 MTR_1g082550 31.980 197 115 5 21 209 28 213 3.35e-27 111
MsG0680035741.01.T01 MTR_7g113800 39.456 147 71 5 26 162 24 162 1.73e-26 108
MsG0680035741.01.T01 MTR_4g120270 47.059 119 57 4 48 165 36 149 4.34e-25 103
MsG0680035741.01.T01 MTR_5g030010 36.076 158 83 3 32 178 49 199 1.14e-24 103
MsG0680035741.01.T01 MTR_5g064980 33.939 165 99 5 4 162 19 179 2.62e-24 103
MsG0680035741.01.T01 MTR_5g064990 36.986 146 85 3 25 165 45 188 3.27e-23 100
MsG0680035741.01.T01 MTR_2g436100 32.335 167 88 3 19 165 3 164 3.81e-23 98.2
MsG0680035741.01.T01 MTR_4g106680 31.522 184 104 5 27 197 29 203 5.42e-23 98.2
MsG0680035741.01.T01 MTR_8g063660 27.572 243 143 8 42 260 5 238 1.58e-22 97.4
MsG0680035741.01.T01 MTR_3g099650 34.459 148 75 4 38 174 55 191 2.69e-22 97.4
MsG0680035741.01.T01 MTR_8g066780 35.374 147 86 4 33 172 50 194 4.61e-22 96.7
MsG0680035741.01.T01 MTR_2g090950 50.633 79 33 1 93 165 90 168 3.18e-21 92.0
MsG0680035741.01.T01 MTR_8g089880 49.333 75 38 0 91 165 124 198 1.03e-20 91.3
MsG0680035741.01.T01 MTR_5g034790 34.591 159 82 5 24 165 34 187 2.84e-20 91.7
MsG0680035741.01.T01 MTR_3g464780 40.870 115 57 3 88 191 96 210 3.02e-20 89.7
MsG0680035741.01.T01 MTR_6g007737 33.083 133 79 3 40 162 69 201 3.67e-20 91.3
MsG0680035741.01.T01 MTR_4g129420 41.121 107 59 3 93 196 116 221 7.74e-20 91.3
MsG0680035741.01.T01 MTR_8g009190 29.353 201 133 4 25 220 6 202 7.91e-20 89.4
MsG0680035741.01.T01 MTR_8g023400 38.182 110 62 2 94 203 92 195 1.68e-19 88.6
MsG0680035741.01.T01 MTR_5g064890 44.186 86 45 1 94 176 128 213 2.51e-19 88.6
MsG0680035741.01.T01 MTR_2g090905 48.101 79 35 1 93 165 38 116 2.87e-19 83.2
MsG0680035741.01.T01 MTR_3g094000 34.228 149 84 5 36 179 38 177 3.54e-19 84.7
MsG0680035741.01.T01 MTR_5g076990 35.811 148 84 5 20 162 7 148 3.64e-19 87.4
MsG0680035741.01.T01 MTR_7g073200 31.481 162 97 5 16 171 5 158 4.22e-19 84.3
MsG0680035741.01.T01 MTR_6g055030 31.098 164 101 4 7 166 17 172 6.65e-19 87.0
MsG0680035741.01.T01 MTR_7g116220 33.103 145 83 4 42 172 7 151 7.77e-19 83.6
MsG0680035741.01.T01 MTR_2g009310 48.000 75 39 0 91 165 132 206 8.61e-19 87.4
MsG0680035741.01.T01 MTR_7g117540 44.262 122 65 3 42 162 24 143 1.65e-18 85.1
MsG0680035741.01.T01 MTR_1g492830 32.283 127 74 3 44 162 8 130 1.94e-18 83.6
MsG0680035741.01.T01 MTR_4g093830 39.216 102 59 1 91 192 123 221 1.97e-18 86.3
MsG0680035741.01.T01 MTR_1g043410 29.843 191 116 7 24 198 14 202 2.20e-18 85.5
MsG0680035741.01.T01 MTR_7g096690 29.927 137 88 3 42 170 14 150 2.68e-18 85.1
MsG0680035741.01.T01 MTR_7g076250 30.168 179 95 7 44 205 8 173 4.02e-18 82.0
MsG0680035741.01.T01 MTR_8g066740 32.374 139 88 2 40 172 20 158 9.84e-18 83.2
MsG0680035741.01.T01 MTR_3g091620 43.478 69 39 0 94 162 101 169 1.04e-17 84.0
MsG0680035741.01.T01 MTR_5g071930 48.718 78 37 1 92 169 64 138 1.20e-17 80.9
MsG0680035741.01.T01 MTR_2g044570 51.515 66 29 1 103 165 63 128 3.70e-17 81.6
MsG0680035741.01.T01 MTR_8g092840 32.667 150 92 2 22 162 33 182 4.33e-17 80.1
MsG0680035741.01.T01 MTR_8g027980 39.344 122 60 5 99 213 95 209 6.42e-17 80.1
MsG0680035741.01.T01 MTR_2g096350 44.000 75 40 1 93 165 106 180 7.81e-17 79.0
MsG0680035741.01.T01 MTR_8g092930 50.704 71 34 1 94 163 112 182 8.38e-17 79.3
MsG0680035741.01.T01 MTR_8g092960 51.429 70 33 1 94 162 103 172 8.62e-17 79.0
MsG0680035741.01.T01 MTR_8g092985 50.704 71 34 1 94 163 111 181 1.00e-16 78.6
MsG0680035741.01.T01 MTR_5g092790 51.351 74 34 1 94 165 157 230 1.03e-16 79.0
MsG0680035741.01.T01 MTR_5g092750 51.351 74 34 1 94 165 157 230 1.20e-16 79.0
MsG0680035741.01.T01 MTR_8g093010 50.000 70 34 1 94 162 107 176 1.79e-16 78.2
MsG0680035741.01.T01 MTR_1g074190 37.209 86 48 1 94 173 99 184 1.82e-16 80.1
MsG0680035741.01.T01 MTR_7g079280 44.444 72 38 1 94 163 80 151 2.40e-16 76.6
MsG0680035741.01.T01 MTR_3g071300 43.038 79 41 1 94 168 76 154 2.75e-16 76.3
MsG0680035741.01.T01 MTR_1g070140 39.726 73 43 1 94 165 103 175 3.04e-16 79.3
MsG0680035741.01.T01 MTR_3g086730 34.884 129 68 5 42 165 3 120 3.08e-16 77.8
MsG0680035741.01.T01 MTR_5g024730 30.769 143 89 2 23 163 14 148 3.20e-16 77.4
MsG0680035741.01.T01 MTR_3g086700 34.677 124 71 4 48 166 3 121 3.78e-16 76.3
MsG0680035741.01.T01 MTR_6g007680 30.000 150 96 2 52 198 1 144 4.23e-16 75.5
MsG0680035741.01.T01 MTR_3g095560 37.692 130 74 4 37 163 54 179 5.38e-16 77.0
MsG0680035741.01.T01 MTR_4g063070 40.000 75 43 1 93 165 307 381 7.26e-16 79.0
MsG0680035741.01.T01 MTR_3g078450 30.556 144 75 4 94 214 76 217 1.29e-15 75.5
MsG0680035741.01.T01 MTR_4g056590 44.928 69 35 1 94 162 100 165 1.87e-15 74.7
MsG0680035741.01.T01 MTR_5g082940 39.806 103 58 2 69 168 50 151 1.99e-15 73.9
MsG0680035741.01.T01 MTR_2g055790 36.129 155 74 7 15 165 12 145 2.21e-15 74.3
MsG0680035741.01.T01 MTR_8g073120 30.714 140 85 4 26 162 10 140 4.11e-15 73.9
MsG0680035741.01.T01 MTR_1g070425 41.096 73 38 2 94 162 68 139 7.08e-15 72.8
MsG0680035741.01.T01 MTR_8g028465 42.029 69 38 1 94 162 90 156 9.30e-15 72.8
MsG0680035741.01.T01 MTR_4g094725 32.903 155 91 5 18 167 7 153 9.54e-15 71.6
MsG0680035741.01.T01 MTR_7g116180 41.096 73 38 2 94 162 67 138 9.86e-15 72.0
MsG0680035741.01.T01 MTR_3g078470 42.254 71 39 1 94 162 76 146 9.89e-15 73.2
MsG0680035741.01.T01 MTR_2g035800 35.338 133 72 5 41 169 29 151 1.00e-14 71.6
MsG0680035741.01.T01 MTR_2g041200 35.433 127 75 3 43 166 33 155 1.05e-14 72.0
MsG0680035741.01.T01 MTR_8g099515 31.293 147 84 4 41 177 255 394 3.03e-14 73.9
MsG0680035741.01.T01 MTR_1g090480 34.028 144 80 6 30 163 7 145 3.56e-14 70.5
MsG0680035741.01.T01 MTR_1g100737 32.955 88 54 1 94 176 92 179 4.09e-14 70.9
MsG0680035741.01.T01 MTR_5g026730 29.134 127 79 3 42 162 15 136 4.91e-14 70.1
MsG0680035741.01.T01 MTR_4g022410 32.143 140 83 3 41 180 46 173 5.33e-14 70.5
MsG0680035741.01.T01 MTR_1g056350 43.056 72 38 1 94 162 74 145 5.37e-14 69.7
MsG0680035741.01.T01 MTR_8g074900 44.286 70 35 2 93 162 157 222 6.24e-14 70.9
MsG0680035741.01.T01 MTR_3g078120 37.037 81 49 1 88 166 51 131 6.47e-14 68.9
MsG0680035741.01.T01 MTR_8g092970 62.222 45 17 0 119 163 130 174 1.00e-13 70.1
MsG0680035741.01.T01 MTR_6g007670 43.750 80 41 2 87 166 4 79 1.16e-13 70.5
MsG0680035741.01.T01 MTR_6g007670 34.906 106 68 1 95 199 146 251 9.14e-13 68.2
MsG0680035741.01.T01 MTR_7g079290 39.241 79 36 2 96 162 119 197 1.42e-13 69.7
MsG0680035741.01.T01 MTR_8g092990 63.636 44 16 0 119 162 140 183 1.55e-13 70.1
MsG0680035741.01.T01 MTR_8g032690 55.814 43 19 0 120 162 19 61 1.73e-13 66.6
MsG0680035741.01.T01 MTR_7g116200 42.029 69 39 1 94 162 68 135 2.51e-13 68.2
MsG0680035741.01.T01 MTR_5g022920 39.437 71 41 1 94 162 161 231 2.51e-13 69.3
MsG0680035741.01.T01 MTR_7g059360 53.704 54 25 0 113 166 151 204 2.87e-13 69.3
MsG0680035741.01.T01 MTR_3g012550 37.037 81 49 1 94 172 80 160 3.17e-13 67.8
MsG0680035741.01.T01 MTR_3g114500 31.746 126 70 4 42 166 7 117 3.53e-13 66.2
MsG0680035741.01.T01 MTR_5g026720 28.682 129 74 5 42 162 17 135 3.67e-13 67.0
MsG0680035741.01.T01 MTR_3g116000 35.772 123 70 5 45 163 30 147 4.26e-13 67.8
MsG0680035741.01.T01 MTR_5g009210 33.333 129 68 4 44 163 239 358 6.61e-13 69.7
MsG0680035741.01.T01 MTR_8g019710 39.130 92 50 3 83 172 16 103 8.88e-13 65.5
MsG0680035741.01.T01 MTR_5g026260 38.542 96 51 4 81 169 460 554 9.17e-13 70.1
MsG0680035741.01.T01 MTR_7g108855 35.052 97 57 3 95 188 67 160 1.26e-12 66.6
MsG0680035741.01.T01 MTR_4g108830 43.243 74 39 2 93 165 148 219 1.53e-12 66.6
MsG0680035741.01.T01 MTR_4g108830 43.243 74 39 2 93 165 120 191 1.57e-12 66.2
MsG0680035741.01.T01 MTR_3g091200 43.056 72 39 1 93 162 302 373 2.14e-12 68.2
MsG0680035741.01.T01 MTR_2g079320 54.545 44 20 0 119 162 158 201 2.77e-12 65.9
MsG0680035741.01.T01 MTR_5g009190 38.889 72 42 1 94 163 266 337 2.91e-12 67.4
MsG0680035741.01.T01 MTR_8g099495 38.889 72 42 1 94 163 319 390 3.07e-12 67.8
MsG0680035741.01.T01 MTR_3g081030 54.348 46 21 0 120 165 119 164 3.52e-12 65.9
MsG0680035741.01.T01 MTR_1g090450 36.000 125 68 4 48 162 27 149 3.55e-12 64.3
MsG0680035741.01.T01 MTR_3g078520 35.294 85 49 2 79 162 66 145 3.59e-12 64.7
MsG0680035741.01.T01 MTR_4g030070 39.130 69 41 1 94 162 85 152 3.89e-12 65.9
MsG0680035741.01.T01 MTR_5g009200 38.889 72 42 1 94 163 322 393 4.23e-12 67.4
MsG0680035741.01.T01 MTR_1g090460 46.154 65 31 1 102 162 73 137 4.40e-12 63.9
MsG0680035741.01.T01 MTR_3g083480 43.836 73 34 2 97 169 220 285 4.47e-12 67.0
MsG0680035741.01.T01 MTR_7g116210 40.580 69 40 1 94 162 10 77 7.12e-12 62.4
MsG0680035741.01.T01 MTR_8g071815 51.111 45 22 0 118 162 88 132 7.92e-12 63.9
MsG0680035741.01.T01 MTR_6g055030 53.333 45 21 0 122 166 97 141 8.83e-12 65.5
MsG0680035741.01.T01 MTR_1g026070 35.294 85 49 2 93 177 47 125 1.12e-11 62.4
MsG0680035741.01.T01 MTR_7g117350 32.168 143 81 6 27 163 225 357 1.19e-11 65.9
MsG0680035741.01.T01 MTR_8g027745 39.189 74 41 2 93 163 285 357 1.24e-11 65.9
MsG0680035741.01.T01 MTR_7g117350 36.275 102 55 4 68 163 268 365 1.32e-11 65.9
MsG0680035741.01.T01 MTR_1g114320 34.831 89 57 1 81 169 155 242 3.39e-11 64.3
MsG0680035741.01.T01 MTR_6g032960 47.368 57 29 1 118 174 234 289 5.00e-11 63.5
MsG0680035741.01.T01 MTR_3g068005 36.111 72 44 2 97 168 174 243 7.36e-11 63.5
MsG0680035741.01.T01 MTR_6g079660 34.831 89 57 1 81 169 196 283 9.42e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035741.01.T01 AT2G20030 46.770 387 154 11 18 371 19 386 1.66e-104 313
MsG0680035741.01.T01 AT4G28890 45.116 430 152 13 16 372 11 429 5.34e-101 306
MsG0680035741.01.T01 AT5G05810 34.393 346 159 10 35 325 51 383 3.00e-40 147
MsG0680035741.01.T01 AT4G40070 39.860 143 70 4 28 162 32 166 5.31e-27 109
MsG0680035741.01.T01 AT5G17600 34.868 152 93 1 43 188 59 210 8.27e-27 110
MsG0680035741.01.T01 AT1G72200 36.000 150 92 2 16 162 38 186 1.48e-26 110
MsG0680035741.01.T01 AT4G09120 35.172 145 83 3 36 177 44 180 1.04e-25 106
MsG0680035741.01.T01 AT4G09110 35.664 143 81 3 36 175 44 178 1.87e-25 105
MsG0680035741.01.T01 AT3G05200 35.795 176 90 7 7 172 16 178 5.26e-25 105
MsG0680035741.01.T01 AT2G35000 32.716 162 91 4 45 190 51 210 2.35e-24 103
MsG0680035741.01.T01 AT3G03550 34.459 148 68 2 40 162 58 201 4.00e-23 99.8
MsG0680035741.01.T01 AT1G23980 36.029 136 74 3 40 162 51 186 1.20e-22 98.6
MsG0680035741.01.T01 AT1G35330 40.458 131 70 3 39 162 42 171 1.41e-22 97.4
MsG0680035741.01.T01 AT3G16720 34.932 146 83 4 77 215 81 221 1.73e-22 97.1
MsG0680035741.01.T01 AT5G57750 31.351 185 109 5 33 209 27 201 7.45e-22 92.8
MsG0680035741.01.T01 AT1G22500 33.588 131 80 3 36 162 33 160 1.03e-21 95.9
MsG0680035741.01.T01 AT5G27420 51.852 81 34 2 94 171 95 173 1.53e-21 95.1
MsG0680035741.01.T01 AT4G09130 45.745 94 47 2 85 175 83 175 1.71e-21 95.1
MsG0680035741.01.T01 AT5G43420 35.443 158 70 5 43 174 39 190 1.73e-21 95.1
MsG0680035741.01.T01 AT1G04360 35.570 149 85 4 36 173 39 187 2.71e-21 94.7
MsG0680035741.01.T01 AT4G09100 48.193 83 40 1 86 165 48 130 2.72e-21 89.0
MsG0680035741.01.T01 AT2G18650 40.179 112 66 1 93 203 98 209 1.53e-20 92.8
MsG0680035741.01.T01 AT4G33565 50.667 75 37 0 91 165 188 262 1.64e-20 92.4
MsG0680035741.01.T01 AT4G17905 35.135 148 73 5 37 165 57 200 2.11e-20 91.3
MsG0680035741.01.T01 AT4G30400 53.521 71 32 1 93 162 106 176 2.15e-20 92.8
MsG0680035741.01.T01 AT3G48030 29.570 186 114 5 21 190 14 198 3.28e-20 89.7
MsG0680035741.01.T01 AT3G48030 29.570 186 114 5 21 190 92 276 3.94e-20 90.9
MsG0680035741.01.T01 AT4G15975 52.174 69 32 1 94 162 51 118 4.26e-20 88.6
MsG0680035741.01.T01 AT4G17905 35.135 148 73 5 37 165 83 226 4.32e-20 90.5
MsG0680035741.01.T01 AT5G10380 51.389 72 35 0 94 165 109 180 8.95e-20 89.0
MsG0680035741.01.T01 AT1G53820 36.752 117 61 2 75 179 64 179 1.45e-19 88.6
MsG0680035741.01.T01 AT5G46650 35.032 157 87 7 24 166 6 161 3.03e-19 87.4
MsG0680035741.01.T01 AT2G34990 32.895 152 82 5 27 162 13 160 3.42e-19 87.8
MsG0680035741.01.T01 AT4G17920 29.493 217 129 7 23 226 7 212 3.51e-19 87.4
MsG0680035741.01.T01 AT2G34990 35.821 134 65 5 41 162 14 138 4.83e-19 87.0
MsG0680035741.01.T01 AT1G72220 36.508 126 76 2 91 215 148 270 8.20e-19 87.8
MsG0680035741.01.T01 AT3G10910 30.286 175 107 6 12 176 1 170 1.33e-18 83.2
MsG0680035741.01.T01 AT2G35420 25.652 230 125 6 39 252 21 220 1.62e-18 84.7
MsG0680035741.01.T01 AT1G72310 44.792 96 43 2 87 172 84 179 4.12e-18 84.7
MsG0680035741.01.T01 AT5G53110 33.858 127 80 2 41 163 247 373 4.37e-18 85.5
MsG0680035741.01.T01 AT3G62690 44.872 78 43 0 95 172 88 165 1.62e-17 82.0
MsG0680035741.01.T01 AT5G40250 31.724 145 75 4 40 162 43 185 1.96e-17 83.6
MsG0680035741.01.T01 AT1G49230 34.868 152 89 5 15 163 30 174 2.16e-17 80.9
MsG0680035741.01.T01 AT2G42350 46.377 69 36 1 94 162 75 142 2.60e-17 80.5
MsG0680035741.01.T01 AT2G27940 45.714 70 35 2 94 162 115 182 2.90e-17 80.9
MsG0680035741.01.T01 AT5G01880 43.836 73 41 0 93 165 78 150 3.33e-17 78.6
MsG0680035741.01.T01 AT1G49200 34.028 144 88 3 21 163 42 179 6.16e-17 79.7
MsG0680035741.01.T01 AT1G32361 43.210 81 42 2 94 173 130 207 6.91e-17 81.3
MsG0680035741.01.T01 AT3G60220 50.704 71 32 1 98 165 92 162 7.39e-17 81.3
MsG0680035741.01.T01 AT3G18773 38.211 123 72 3 42 163 54 173 8.58e-17 79.0
MsG0680035741.01.T01 AT2G42360 43.836 73 40 1 94 165 81 153 9.65e-17 79.3
MsG0680035741.01.T01 AT5G05280 36.154 130 61 5 57 171 41 163 1.33e-16 77.4
MsG0680035741.01.T01 AT1G49210 50.704 71 34 1 94 163 108 178 5.32e-16 77.0
MsG0680035741.01.T01 AT1G74410 43.836 73 41 0 94 166 150 222 5.89e-16 76.6
MsG0680035741.01.T01 AT2G47560 39.773 88 51 1 86 171 72 159 5.95e-16 76.6
MsG0680035741.01.T01 AT3G14320 43.038 79 44 1 94 172 63 140 7.60e-16 75.9
MsG0680035741.01.T01 AT1G76410 30.935 139 92 3 26 163 12 147 7.77e-16 75.5
MsG0680035741.01.T01 AT3G18930 25.424 177 88 4 29 165 29 201 9.50e-16 78.6
MsG0680035741.01.T01 AT3G18930 25.424 177 88 4 29 165 29 201 9.50e-16 78.6
MsG0680035741.01.T01 AT3G18930 25.424 177 88 4 29 165 29 201 9.50e-16 78.6
MsG0680035741.01.T01 AT1G20823 47.887 71 36 1 94 163 84 154 1.55e-15 75.1
MsG0680035741.01.T01 AT1G49220 34.247 146 85 5 21 163 41 178 2.23e-15 75.5
MsG0680035741.01.T01 AT2G17450 44.737 76 35 2 94 162 69 144 3.22e-15 73.9
MsG0680035741.01.T01 AT2G35910 41.429 70 41 0 93 162 120 189 4.40e-15 73.9
MsG0680035741.01.T01 AT2G46160 39.744 78 39 1 94 163 104 181 4.46e-15 73.9
MsG0680035741.01.T01 AT2G46160 39.744 78 39 1 94 163 104 181 4.46e-15 73.9
MsG0680035741.01.T01 AT1G28040 43.421 76 35 2 93 163 224 296 6.31e-15 75.1
MsG0680035741.01.T01 AT2G37580 47.436 78 40 1 95 171 116 193 7.26e-15 73.9
MsG0680035741.01.T01 AT2G46493 34.921 126 70 4 47 163 59 181 8.29e-15 72.4
MsG0680035741.01.T01 AT3G61550 36.264 91 47 1 93 172 98 188 1.39e-14 72.4
MsG0680035741.01.T01 AT5G47610 33.566 143 68 6 29 165 31 152 3.47e-14 70.5
MsG0680035741.01.T01 AT2G25410 29.851 134 72 3 43 162 244 369 4.43e-14 73.6
MsG0680035741.01.T01 AT5G07040 41.096 73 39 2 94 163 66 137 5.53e-14 69.7
MsG0680035741.01.T01 AT1G33480 32.258 124 76 3 78 201 65 180 1.03e-13 70.9
MsG0680035741.01.T01 AT2G34000 30.769 130 81 4 40 162 6 133 1.11e-13 68.6
MsG0680035741.01.T01 AT3G20395 43.478 69 37 1 94 162 147 213 1.36e-13 70.1
MsG0680035741.01.T01 AT3G19950 37.079 89 55 1 81 169 177 264 1.70e-13 71.2
MsG0680035741.01.T01 AT3G19950 37.079 89 55 1 81 169 235 322 2.54e-13 71.2
MsG0680035741.01.T01 AT3G19950 37.079 89 55 1 81 169 235 322 2.54e-13 71.2
MsG0680035741.01.T01 AT4G26400 44.000 75 35 2 97 171 224 291 2.57e-13 70.9
MsG0680035741.01.T01 AT4G26400 44.000 75 35 2 97 171 224 291 2.57e-13 70.9
MsG0680035741.01.T01 AT4G30370 38.889 72 44 0 94 165 89 160 2.76e-13 68.2
MsG0680035741.01.T01 AT2G46495 31.655 139 74 5 37 163 234 363 3.97e-13 70.5
MsG0680035741.01.T01 AT3G11110 36.471 85 53 1 88 171 74 158 5.84e-13 66.6
MsG0680035741.01.T01 AT4G35480 31.343 134 52 3 94 204 72 188 6.12e-13 67.8
MsG0680035741.01.T01 AT5G66070 51.020 49 24 0 114 162 170 218 8.47e-13 67.8
MsG0680035741.01.T01 AT5G66070 51.020 49 24 0 114 162 170 218 8.47e-13 67.8
MsG0680035741.01.T01 AT3G19140 41.096 73 42 1 93 165 53 124 9.48e-13 65.5
MsG0680035741.01.T01 AT5G58580 41.096 73 42 1 94 165 111 183 9.92e-13 68.6
MsG0680035741.01.T01 AT2G46495 40.541 74 41 1 93 163 262 335 1.10e-12 68.9
MsG0680035741.01.T01 AT5G66070 51.020 49 24 0 114 162 194 242 1.34e-12 67.4
MsG0680035741.01.T01 AT2G17730 52.174 46 22 0 120 165 196 241 1.80e-12 67.0
MsG0680035741.01.T01 AT5G56340 41.379 87 35 3 76 162 230 300 1.96e-12 68.6
MsG0680035741.01.T01 AT4G35840 40.278 72 40 1 94 162 162 233 2.41e-12 66.6
MsG0680035741.01.T01 AT5G06490 48.837 43 22 0 120 162 129 171 2.51e-12 65.9
MsG0680035741.01.T01 AT1G26800 34.066 91 53 3 79 168 76 160 2.79e-12 65.9
MsG0680035741.01.T01 AT2G46494 41.333 75 36 2 94 163 288 359 3.14e-12 67.8
MsG0680035741.01.T01 AT1G55530 40.789 76 38 2 97 172 206 274 3.43e-12 67.4
MsG0680035741.01.T01 AT1G55530 40.789 76 38 2 97 172 206 274 3.43e-12 67.4
MsG0680035741.01.T01 AT4G11370 31.933 119 76 3 48 164 17 132 3.60e-12 64.3
MsG0680035741.01.T01 AT2G44581 40.000 75 40 1 120 194 70 139 3.94e-12 63.9
MsG0680035741.01.T01 AT1G80400 29.371 143 61 6 51 166 271 400 4.40e-12 67.4
MsG0680035741.01.T01 AT1G55530 40.789 76 38 2 97 172 173 241 4.71e-12 66.6
MsG0680035741.01.T01 AT2G18670 37.179 78 48 1 94 170 83 160 1.23e-11 63.5
MsG0680035741.01.T01 AT4G10150 40.845 71 37 2 94 162 86 153 1.43e-11 64.3
MsG0680035741.01.T01 AT4G10160 37.681 69 42 1 94 162 72 139 1.83e-11 63.9
MsG0680035741.01.T01 AT5G20910 38.554 83 48 2 90 170 198 279 2.05e-11 64.7
MsG0680035741.01.T01 AT4G24015 46.667 60 31 1 113 172 99 157 2.22e-11 62.4
MsG0680035741.01.T01 AT4G17245 40.449 89 49 3 95 181 76 162 2.29e-11 62.4
MsG0680035741.01.T01 AT3G61460 31.008 129 83 4 38 162 11 137 2.62e-11 62.4
MsG0680035741.01.T01 AT5G36001 52.273 44 21 0 120 163 264 307 5.57e-11 63.5
MsG0680035741.01.T01 AT1G22670 25.926 135 79 5 30 162 159 274 5.85e-11 63.9

Find 44 sgRNAs with CRISPR-Local

Find 50 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAGCAGCTTTAGAAAATT+TGG 0.134283 6:+111447372 MsG0680035741.01.T01:CDS
TTGCATATTCAAATAGTTTA+AGG 0.136492 6:+111447262 MsG0680035741.01.T01:CDS
TGAAAAGCATGTTTACATTT+TGG 0.148968 6:-111447153 None:intergenic
AGTGTTGCTAATTGATTATT+TGG 0.180973 6:-111446976 None:intergenic
TTGACTTTATGTCTACAAAT+AGG 0.314099 6:-111447219 None:intergenic
TTAATGCTTCATCAAGTAAT+AGG 0.316134 6:+111447592 MsG0680035741.01.T01:CDS
AGGAAAGAAGGAGGAAGCTT+TGG 0.319725 6:+111447760 MsG0680035741.01.T01:CDS
TCAGCTGTTCTTCTTGCAAT+TGG 0.337125 6:-111447786 None:intergenic
TTATTTGGATCATCACTTAT+AGG 0.373267 6:-111446961 None:intergenic
ATATTGATTGTATTGATCAT+TGG 0.383791 6:+111447175 MsG0680035741.01.T01:CDS
TTCAAATAGTTTAAGGATGT+TGG 0.385604 6:+111447269 MsG0680035741.01.T01:CDS
CCAAGTCTTGTAGTTGTCAT+AGG 0.403622 6:+111446862 MsG0680035741.01.T01:CDS
AGCTCTAACATGGAAGAATA+AGG 0.406881 6:-111446785 None:intergenic
ATGTTGTGTTTAAGCATAGA+TGG 0.422818 6:+111447523 MsG0680035741.01.T01:CDS
TTCAAATTCTCTTCTCTCAA+AGG 0.438829 6:+111447060 MsG0680035741.01.T01:CDS
ATAAGGTAGAGAGAATCAAA+AGG 0.443246 6:-111446768 None:intergenic
GAATTTGTAGTTTGTGATGT+TGG 0.449492 6:-111446814 None:intergenic
TTGTCTTCGGTGACATACTT+TGG 0.451388 6:-111446932 None:intergenic
AATAAGAAGAATGAATGTTA+AGG 0.452486 6:-111446905 None:intergenic
ATATTGAAGGAAGAAGAAAA+AGG 0.465980 6:+111447408 MsG0680035741.01.T01:CDS
GTAGTTGTCATAGGAATCCT+AGG 0.466415 6:+111446871 MsG0680035741.01.T01:CDS
TCTTGAAAATAATCTTAAAG+AGG 0.469161 6:+111447740 MsG0680035741.01.T01:CDS
AAAAGGTGCTACTATATTGA+AGG 0.472951 6:+111447395 MsG0680035741.01.T01:CDS
AGCTTTAGAAAATTTGGAAA+AGG 0.480613 6:+111447378 MsG0680035741.01.T01:CDS
ATAATCTTAAAGAGGAAAGA+AGG 0.482860 6:+111447748 MsG0680035741.01.T01:CDS
TAAGGTAGAGAGAATCAAAA+GGG 0.485255 6:-111446767 None:intergenic
CAAAGGTTCAAAACAAGGGT+TGG 0.486386 6:+111447077 MsG0680035741.01.T01:CDS
TTATAGGAAGTAATTGTCTT+CGG 0.487581 6:-111446945 None:intergenic
CCTATGACAACTACAAGACT+TGG 0.494592 6:-111446862 None:intergenic
GGTTCATCAAGGTTTAGTAT+TGG 0.498757 6:+111447351 MsG0680035741.01.T01:CDS
GATACCAAGTTGATTCATCA+TGG 0.508295 6:-111446743 None:intergenic
TTGCAAGAAGAACAGCTGAA+TGG 0.523336 6:+111447790 MsG0680035741.01.T01:CDS
TCTCTCAAAGGTTCAAAACA+AGG 0.525732 6:+111447072 MsG0680035741.01.T01:CDS
ATCATCAACATGGTTCATCA+AGG 0.530485 6:+111447340 MsG0680035741.01.T01:CDS
TAAACTATTTGAATATGCAA+AGG 0.538844 6:-111447259 None:intergenic
CTCTCAAAGGTTCAAAACAA+GGG 0.543130 6:+111447073 MsG0680035741.01.T01:CDS
TGACAACTACAAGACTTGGT+TGG 0.544711 6:-111446858 None:intergenic
AGATCAGTGTCAGAAATCAC+TGG 0.561549 6:+111447660 MsG0680035741.01.T01:CDS
AAGTAATAGGTTCAACAACA+TGG 0.572303 6:+111447605 MsG0680035741.01.T01:CDS
TTAAGGAAAACATGAGACCT+AGG 0.594890 6:-111446888 None:intergenic
AGAACCATGATGAATCAACT+TGG 0.598025 6:+111446739 None:intergenic
ATCTTAAAGAGGAAAGAAGG+AGG 0.605571 6:+111447751 MsG0680035741.01.T01:CDS
TTGGTGATTGAGCTCTAACA+TGG 0.623171 6:-111446795 None:intergenic
GAAGAAGATAATCATCAACA+TGG 0.686301 6:+111447330 MsG0680035741.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGTGATTCTAACAATA+AGG + Chr6:111447464-111447483 MsG0680035741.01.T01:CDS 20.0%
!! AATAAGAAGAATGAATGTTA+AGG - Chr6:111446908-111446927 None:intergenic 20.0%
!! TAAACTATTTGAATATGCAA+AGG - Chr6:111447262-111447281 None:intergenic 20.0%
!! TCAAAAATTCAAGATTATGA+TGG + Chr6:111447630-111447649 MsG0680035741.01.T01:CDS 20.0%
!! TCTTGAAAATAATCTTAAAG+AGG + Chr6:111447740-111447759 MsG0680035741.01.T01:CDS 20.0%
!! TTGCATATTCAAATAGTTTA+AGG + Chr6:111447262-111447281 MsG0680035741.01.T01:CDS 20.0%
!!! AGAAAAAGGTATTATTTCAA+AGG + Chr6:111447422-111447441 MsG0680035741.01.T01:CDS 20.0%
!!! ATATTGATTGTATTGATCAT+TGG + Chr6:111447175-111447194 MsG0680035741.01.T01:CDS 20.0%
! AGAGAAGAGAATTTGAAAAA+CGG - Chr6:111447057-111447076 None:intergenic 25.0%
! ATAATCTTAAAGAGGAAAGA+AGG + Chr6:111447748-111447767 MsG0680035741.01.T01:CDS 25.0%
! ATATTGAAGGAAGAAGAAAA+AGG + Chr6:111447408-111447427 MsG0680035741.01.T01:CDS 25.0%
! TTAATGCTTCATCAAGTAAT+AGG + Chr6:111447592-111447611 MsG0680035741.01.T01:CDS 25.0%
! TTATAGGAAGTAATTGTCTT+CGG - Chr6:111446948-111446967 None:intergenic 25.0%
! TTATTTGGATCATCACTTAT+AGG - Chr6:111446964-111446983 None:intergenic 25.0%
! TTCAAATAGTTTAAGGATGT+TGG + Chr6:111447269-111447288 MsG0680035741.01.T01:CDS 25.0%
! TTGACTTTATGTCTACAAAT+AGG - Chr6:111447222-111447241 None:intergenic 25.0%
!! AGTGTTGCTAATTGATTATT+TGG - Chr6:111446979-111446998 None:intergenic 25.0%
!!! AGATTTTGACATGAAGAAAA+GGG + Chr6:111447698-111447717 MsG0680035741.01.T01:CDS 25.0%
!!! AGCTTTAGAAAATTTGGAAA+AGG + Chr6:111447378-111447397 MsG0680035741.01.T01:CDS 25.0%
!!! TGAAAAGCATGTTTACATTT+TGG - Chr6:111447156-111447175 None:intergenic 25.0%
AAGTAATAGGTTCAACAACA+TGG + Chr6:111447605-111447624 MsG0680035741.01.T01:CDS 30.0%
ATAAGGTAGAGAGAATCAAA+AGG - Chr6:111446771-111446790 None:intergenic 30.0%
ATGTTGTGTTTAAGCATAGA+TGG + Chr6:111447523-111447542 MsG0680035741.01.T01:CDS 30.0%
GAAGAAGATAATCATCAACA+TGG + Chr6:111447330-111447349 MsG0680035741.01.T01:CDS 30.0%
GGTTTGTCAATAGAGAAAAA+AGG + Chr6:111447811-111447830 MsG0680035741.01.T01:CDS 30.0%
TAAGGTAGAGAGAATCAAAA+GGG - Chr6:111446770-111446789 None:intergenic 30.0%
TTCAAATTCTCTTCTCTCAA+AGG + Chr6:111447060-111447079 MsG0680035741.01.T01:CDS 30.0%
! AGATCAAGATCAAGATTTTC+AGG + Chr6:111447003-111447022 MsG0680035741.01.T01:CDS 30.0%
! GAATTTGTAGTTTGTGATGT+TGG - Chr6:111446817-111446836 None:intergenic 30.0%
!! AAAAGGTGCTACTATATTGA+AGG + Chr6:111447395-111447414 MsG0680035741.01.T01:CDS 30.0%
!! GAGATTTTGACATGAAGAAA+AGG + Chr6:111447697-111447716 MsG0680035741.01.T01:CDS 30.0%
ATCATCAACATGGTTCATCA+AGG + Chr6:111447340-111447359 MsG0680035741.01.T01:CDS 35.0%
ATCTTAAAGAGGAAAGAAGG+AGG + Chr6:111447751-111447770 MsG0680035741.01.T01:CDS 35.0%
CTCTCAAAGGTTCAAAACAA+GGG + Chr6:111447073-111447092 MsG0680035741.01.T01:CDS 35.0%
GGTTCATCAAGGTTTAGTAT+TGG + Chr6:111447351-111447370 MsG0680035741.01.T01:CDS 35.0%
TCTCTCAAAGGTTCAAAACA+AGG + Chr6:111447072-111447091 MsG0680035741.01.T01:CDS 35.0%
TTAAGGAAAACATGAGACCT+AGG - Chr6:111446891-111446910 None:intergenic 35.0%
! AGCTCTAACATGGAAGAATA+AGG - Chr6:111446788-111446807 None:intergenic 35.0%
!! GGAAGCAGCTTTAGAAAATT+TGG + Chr6:111447372-111447391 MsG0680035741.01.T01:CDS 35.0%
AGATCAGTGTCAGAAATCAC+TGG + Chr6:111447660-111447679 MsG0680035741.01.T01:CDS 40.0%
CAAAGGTTCAAAACAAGGGT+TGG + Chr6:111447077-111447096 MsG0680035741.01.T01:CDS 40.0%
CCTATGACAACTACAAGACT+TGG - Chr6:111446865-111446884 None:intergenic 40.0%
GTAGTTGTCATAGGAATCCT+AGG + Chr6:111446871-111446890 MsG0680035741.01.T01:CDS 40.0%
TCAGCTGTTCTTCTTGCAAT+TGG - Chr6:111447789-111447808 None:intergenic 40.0%
TTGCAAGAAGAACAGCTGAA+TGG + Chr6:111447790-111447809 MsG0680035741.01.T01:CDS 40.0%
TTGTCTTCGGTGACATACTT+TGG - Chr6:111446935-111446954 None:intergenic 40.0%
! CCAAGTCTTGTAGTTGTCAT+AGG + Chr6:111446862-111446881 MsG0680035741.01.T01:CDS 40.0%
! TGACAACTACAAGACTTGGT+TGG - Chr6:111446861-111446880 None:intergenic 40.0%
! TTGGTGATTGAGCTCTAACA+TGG - Chr6:111446798-111446817 None:intergenic 40.0%
AGGAAAGAAGGAGGAAGCTT+TGG + Chr6:111447760-111447779 MsG0680035741.01.T01:CDS 45.0%
Chromosome Type Strat End Strand Name
Chr6 gene 111446745 111447878 111446745 ID=MsG0680035741.01;Name=MsG0680035741.01
Chr6 mRNA 111446745 111447878 111446745 ID=MsG0680035741.01.T01;Parent=MsG0680035741.01;Name=MsG0680035741.01.T01;_AED=0.17;_eAED=0.17;_QI=0|-1|0|1|-1|1|1|0|377
Chr6 exon 111446745 111447878 111446745 ID=MsG0680035741.01.T01:exon:9134;Parent=MsG0680035741.01.T01
Chr6 CDS 111446745 111447878 111446745 ID=MsG0680035741.01.T01:cds;Parent=MsG0680035741.01.T01
Gene Sequence

>MsG0680035741.01.T01

ATGATGAATCAACTTGGTATCACCCTTTTGATTCTCTCTACCTTATTCTTCCATGTTAGAGCTCAATCACCAACATCACAAACTACAAATTCACAAGATGCTGTTTCAAATTTCCAACCAAGTCTTGTAGTTGTCATAGGAATCCTAGGTCTCATGTTTTCCTTAACATTCATTCTTCTTATTTTTGCCAAAGTATGTCACCGAAGACAATTACTTCCTATAAGTGATGATCCAAATAATCAATTAGCAACACTTATGAGATCAAGATCAAGATTTTCAGGAATTGACAAAACAGCTATTGAATCACTTCCGTTTTTCAAATTCTCTTCTCTCAAAGGTTCAAAACAAGGGTTGGAATGTTCAATATGTTTGTCGAAATTCGAAGACATAGAAATTTTAAGATTGTTACCAAAATGTAAACATGCTTTTCATATTGATTGTATTGATCATTGGCTTGAGAAACACTCAAGTTGTCCTATTTGTAGACATAAAGTCAACATTGAAGATCAAACAACCTTTGCATATTCAAATAGTTTAAGGATGTTGGTAAGTGAAGAATCAAACATAGAGATCTTTGTTGAAAGAGAAGAAGATAATCATCAACATGGTTCATCAAGGTTTAGTATTGGAAGCAGCTTTAGAAAATTTGGAAAAGGTGCTACTATATTGAAGGAAGAAGAAAAAGGTATTATTTCAAAGGAAGAAGAATTGCTTATAGAAAAAAGTGATTCTAACAATAAGGCTTATCATAAACATAATCACAAGATTACTATATCTGATGTTGTGTTTAAGCATAGATGGAGTAATGTTAGTTCATCTGATCTTATGTTTTTGAATTCAGAAATGATTAATGCTTCATCAAGTAATAGGTTCAACAACATGGAATCAAAAATTCAAGATTATGATGGTGAGAAAAGATCAGTGTCAGAAATCACTGGTGTTTCTAGATTTAGAGATTTTGACATGAAGAAAAGGGTTTTTGAAGATTCTTCTTCTCTTGAAAATAATCTTAAAGAGGAAAGAAGGAGGAAGCTTTGGTTTCCAATTGCAAGAAGAACAGCTGAATGGTTTGTCAATAGAGAAAAAAGGTCTCAACAATCTCAGAATAAACAACAATCATTTGTTGATGTATAG

Protein sequence

>MsG0680035741.01.T01

MMNQLGITLLILSTLFFHVRAQSPTSQTTNSQDAVSNFQPSLVVVIGILGLMFSLTFILLIFAKVCHRRQLLPISDDPNNQLATLMRSRSRFSGIDKTAIESLPFFKFSSLKGSKQGLECSICLSKFEDIEILRLLPKCKHAFHIDCIDHWLEKHSSCPICRHKVNIEDQTTFAYSNSLRMLVSEESNIEIFVEREEDNHQHGSSRFSIGSSFRKFGKGATILKEEEKGIISKEEELLIEKSDSNNKAYHKHNHKITISDVVFKHRWSNVSSSDLMFLNSEMINASSSNRFNNMESKIQDYDGEKRSVSEITGVSRFRDFDMKKRVFEDSSSLENNLKEERRRKLWFPIARRTAEWFVNREKRSQQSQNKQQSFVDV*