AlfalfaGEDB | MsG0080048977.01

M. sativa cultivar ZhongmuNo.1 / MsG0080048977.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048977.01.T01	XP_013448405.2	92.205	449	28	3	1	447	1	444	0	739

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048977.01.T01	Q9FJG9	62.832	452	150	6	2	444	1	443	0	523

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048977.01.T01	A2Q2N3	92.205	449	28	3	1	447	1	444	0.0	739

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
MsG0080048977.01	MsG0780038230.01	PPI
MsG0080048977.01	MsG0180004859.01	PPI
MsG0080048977.01	MsG0680035368.01	PPI
MsG0080048977.01	MsG0680035402.01	PPI
MsG0080048977.01	MsG0880045103.01	PPI
MsG0080048977.01	MsG0880045491.01	PPI
MsG0080048977.01	MsG0680034378.01	PPI
MsG0080048977.01	MsG0880043688.01	PPI
MsG0080048977.01	MsG0180000521.01	PPI
MsG0080048977.01	MsG0180000577.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048977.01.T01	MTR_7g451760	94.872	273	11	1	175	447	9	278	3.06e-164	464
MsG0080048977.01.T01	MTR_7g451760	40.800	125	71	2	106	227	99	223	6.04e-13	69.3
MsG0080048977.01.T01	MTR_7g047560	94.872	273	11	1	175	447	9	278	3.06e-164	464
MsG0080048977.01.T01	MTR_7g047560	40.800	125	71	2	106	227	99	223	6.04e-13	69.3
MsG0080048977.01.T01	MTR_7g047550	88.068	176	17	2	1	174	17	190	1.97e-93	281
MsG0080048977.01.T01	MTR_7g451750	88.068	176	17	2	1	174	17	190	1.97e-93	281
MsG0080048977.01.T01	MTR_5g089900	33.428	353	184	12	45	378	345	665	1.02e-37	147
MsG0080048977.01.T01	MTR_5g089900	32.581	310	175	9	151	444	326	617	5.03e-31	127
MsG0080048977.01.T01	MTR_5g089900	33.036	224	129	7	169	378	282	498	6.65e-20	93.2
MsG0080048977.01.T01	MTR_0024s0070	32.565	347	173	10	123	414	7	347	1.45e-37	141

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048977.01.T01	AT5G60870	62.939	456	150	7	2	444	1	450	0.0	524
MsG0080048977.01.T01	AT5G60870	62.832	452	150	6	2	444	1	443	0.0	523
MsG0080048977.01.T01	AT5G60870	63.990	386	124	5	2	378	1	380	1.54e-160	459
MsG0080048977.01.T01	AT5G60870	36.719	128	77	3	95	218	255	382	5.73e-13	70.9
MsG0080048977.01.T01	AT5G60870	69.259	270	80	1	175	444	8	274	5.52e-120	351
MsG0080048977.01.T01	AT5G60870	37.956	137	81	3	95	227	86	222	8.08e-18	84.0
MsG0080048977.01.T01	AT5G12350	35.227	352	174	12	47	378	330	647	4.80e-41	157
MsG0080048977.01.T01	AT5G12350	33.333	243	139	5	151	378	309	543	1.29e-30	125
MsG0080048977.01.T01	AT5G12350	29.667	300	163	8	45	327	380	648	2.58e-20	94.7
MsG0080048977.01.T01	AT5G19420	33.811	349	183	10	47	378	334	651	1.00e-39	152

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Find 24 sgRNAs with CRISPR-Local

Find 516 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGCCAGTGATTCGCAGT+TGG	0.535966	contig580end:+14992	MsG0080048977.01.T01:exon
AAATTGACTTCAACAGGGCA+TGG	0.567809	contig580end:-15041	MsG0080048977.01.T01:intergenic
AACTCCCAACTGCGAATCAC+TGG	0.481923	contig580end:-14997	MsG0080048977.01.T01:intergenic
AATGCCAGTGATTCGCAGTT+GGG	0.485138	contig580end:+14993	MsG0080048977.01.T01:exon
ACAGGGCATGGTTGTATCGC+TGG	0.510257	contig580end:-15029	MsG0080048977.01.T01:intergenic
ACAGTAATGCCGTGTTGGCA+TGG	0.571442	contig580end:+15193	MsG0080048977.01.T01:exon
AGAATGCATCAATGAATAAA+TGG	0.292404	contig580end:+15285	MsG0080048977.01.T01:exon
ATAAAGGAAAATTATACATG+TGG	0.595071	contig580end:+14968	MsG0080048977.01.T01:intron
ATGCCATGTGTTTAGCTTTG+AGG	0.433050	contig580end:+15126	MsG0080048977.01.T01:exon
ATTCGCAGTTGGGAGTTCCT+GGG	0.550758	contig580end:+15003	MsG0080048977.01.T01:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCCTATAACTTCAAGA+TGG	-	contig580end:13455-13474	MsG0080048976.01.T01:intergenic	30.0%
AAACTGATTATGTTGGATGT+AGG	+	contig580end:13740-13759	MsG0080048977.01.T01:intron	30.0%
AACTGATTATGTTGGATGTA+GGG	+	contig580end:13741-13760	MsG0080048977.01.T01:intron	30.0%
AAGACTCTTGTGTAAAAAAC+AGG	+	contig580end:12467-12486	MsG0080048977.01.T01:intron	30.0%
ACCACTCTTCCAAATTAAAT+CGG	-	contig580end:11426-11445	MsG0080048977.01.T01:intergenic	30.0%
AGACTCTTGTGTAAAAAACA+GGG	+	contig580end:12468-12487	MsG0080048977.01.T01:intron	30.0%
AGATTTCAAATGGGATAGTT+GGG	+	contig580end:13050-13069	MsG0080048977.01.T01:intron	30.0%
ATAACTTCAAGATGGTATCA+AGG	-	contig580end:13447-13466	MsG0080048977.01.T01:intergenic	30.0%
ATACTATCAGAGAGAAAAGA+TGG	+	contig580end:13293-13312	MsG0080048977.01.T01:intron	30.0%
ATATGGTTCTCAAAAATGCA+TGG	+	contig580end:14576-14595	MsG0080048977.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
contig580end	gene	8916	15318	8916	ID=MsG0080048977.01;
contig580end	mRNA	8916	15318	8916	ID=MsG0080048977.01.T01;Parent=MsG0080048977.01
contig580end	exon	8916	9003	8916	ID=MsG0080048977.01.T01.exon;Parent=MsG0080048977.01.T01
contig580end	exon	9500	10020	9500	ID=MsG0080048977.01.T01.exon;Parent=MsG0080048977.01.T01
contig580end	CDS	9500	10020	9500	ID=MsG0080048977.01.T01.cds;Parent=MsG0080048977.01.T01
contig580end	CDS	11768	11907	11768	ID=MsG0080048977.01.T01.cds;Parent=MsG0080048977.01.T01
contig580end	exon	11768	11907	11768	ID=MsG0080048977.01.T01.exon;Parent=MsG0080048977.01.T01
contig580end	CDS	13762	13956	13762	ID=MsG0080048977.01.T01.cds;Parent=MsG0080048977.01.T01
contig580end	exon	13762	13956	13762	ID=MsG0080048977.01.T01.exon;Parent=MsG0080048977.01.T01
contig580end	CDS	14066	14194	14066	ID=MsG0080048977.01.T01.cds;Parent=MsG0080048977.01.T01
contig580end	exon	14066	14194	14066	ID=MsG0080048977.01.T01.exon;Parent=MsG0080048977.01.T01
contig580end	CDS	14289	14437	14289	ID=MsG0080048977.01.T01.cds;Parent=MsG0080048977.01.T01
contig580end	exon	14289	14437	14289	ID=MsG0080048977.01.T01.exon;Parent=MsG0080048977.01.T01
contig580end	CDS	14803	14825	14803	ID=MsG0080048977.01.T01.cds;Parent=MsG0080048977.01.T01
contig580end	exon	14803	14825	14803	ID=MsG0080048977.01.T01.exon;Parent=MsG0080048977.01.T01
contig580end	CDS	14974	15160	14974	ID=MsG0080048977.01.T01.cds;Parent=MsG0080048977.01.T01
contig580end	exon	14974	15318	14974	ID=MsG0080048977.01.T01.exon;Parent=MsG0080048977.01.T01

Gene Sequence

>MsG0080048977.01.T01

ATGATGGCGACGAATCTCCACCGTCACCGCCGCCGCATAGCGACGCTAACACACCGCTTATATTCCTCCTTCTCCACCACCACGAAAACCTCCACACTCTACACCTCAGACACCCCCAACCCCACCACAATCCAACTCCTCTCATGGGGCAAAGGCGCCTCCGGCCAACTCGGCGGCGGCGTCGAAGAAACTCGTCTCTACCCATCTCCAGTCACCAACCTACTTCTCCCTCCAAAATTCAATCTTTTCAACACCCCCGGGCTTTTACCTGGGCCTGAGGGGAGCAACAATAAAGGGGTGGAAGTGGAAGTGGGTATTTCGTGTGGGCTTTTTCATTCTTGTTTGGTTGTTGATGGTGGGCTTTGGGTTTGGGGTAAAGGTGATGGTGGGAGATTAGGCTTAGGTCATGAGAATTCGATGTTTGTTCCTACTTTGAATCCTCATCTTGATAATGTGAAGTCTGTTGCTCTTGGTGGGTTGCATTCTGTTGCGCTTACCTCTGCTGGTGAAGTTTTTACATGGGGTTATGGTGGTTTTGGGGCACTTGGACACTCAGTATACACAAGGGAGCTATTCCCTAGGTTGGTAAAAGGGGCCTGGGAGGGGACTATCAAACACATTGCTACTAGTGGAGCGCATACTGCGGCAGTAACTGAATCAGGGGAGCTTTATATATGGGGTCGAGAAGAAGGAGAAGGTCGATTGGGCCTTGGTCCTGGTCGGGGCCCAGATCATGCAGGTGGACTTAGTATCCCTTGCAAAGTAAAAGAATTACCTTTCTCTGTTGCTGCTGTTTCTTGTGGGGGATTTTTCACACTGGCATTGACAGAGGAAGGACAACTGTGGAACTGGGGAGCAAATTCTAACTATGAACTTGGGAGAGGTGATAGAATTGGTGGTTGGAGACCCAGACCAGTACCTAGCCTTGAGAAGGTTCGAGTAATTCAAATAGCAAGCGGAGGATATCACTCCCTTGCATTAACAGATGACGGCAAAGTGCTTTCATGGGGCCATGGTGGACAAGGTCAGTTGGGTCATGGATCTGTCGAGAACCAGAAGATACCAACATTAGTCGAGGCTATAGCTCATGAGCATATTATATATATTTCTTGTGGGGGTGCTTCATCTGCAGCTACTGGTTTTGACTCAGATAAAATGAAAATTATACATGTGGGAAATGCCAGTGATTCGCAGTTGGGAGTTCCTGGGCTACCAGCGATACAACCATGCCCTGTTGAAGTCAATTTTTTAATGGAAGATGATGGATTAGGATCACACAAGGTTTTATCAATTGCAAATGGCGCATCACATGCCATGTGTTTAGCTTTGAGGGAAAGTTGTTGA

Protein sequence

>MsG0080048977.01.T01

MMATNLHRHRRRIATLTHRLYSSFSTTTKTSTLYTSDTPNPTTIQLLSWGKGASGQLGGGVEETRLYPSPVTNLLLPPKFNLFNTPGLLPGPEGSNNKGVEVEVGISCGLFHSCLVVDGGLWVWGKGDGGRLGLGHENSMFVPTLNPHLDNVKSVALGGLHSVALTSAGEVFTWGYGGFGALGHSVYTRELFPRLVKGAWEGTIKHIATSGAHTAAVTESGELYIWGREEGEGRLGLGPGRGPDHAGGLSIPCKVKELPFSVAAVSCGGFFTLALTEEGQLWNWGANSNYELGRGDRIGGWRPRPVPSLEKVRVIQIASGGYHSLALTDDGKVLSWGHGGQGQLGHGSVENQKIPTLVEAIAHEHIIYISCGGASSAATGFDSDKMKIIHVGNASDSQLGVPGLPAIQPCPVEVNFLMEDDGLGSHKVLSIANGASHAMCLALRESC*