AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035368.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035368.01.T01 MTR_3g016210 60.811 444 154 5 3 429 4 444 0.0 517
MsG0680035368.01.T01 MTR_8g039620 63.570 409 141 4 1 402 1 408 4.15e-176 499
MsG0680035368.01.T01 MTR_8g072510 61.290 434 158 6 3 433 4 430 6.85e-174 494
MsG0680035368.01.T01 MTR_7g021090 61.654 399 142 3 1 396 1 391 1.30e-168 479
MsG0680035368.01.T01 MTR_8g069880 59.569 418 163 5 9 425 7 419 2.11e-163 468
MsG0680035368.01.T01 MTR_8g062410 61.538 416 143 6 3 415 4 405 6.32e-163 467
MsG0680035368.01.T01 MTR_8g073260 55.083 423 175 5 1 418 4 416 6.86e-157 451
MsG0680035368.01.T01 MTR_8g467780 53.846 442 185 6 7 431 9 448 9.34e-156 448
MsG0680035368.01.T01 MTR_1g059930 63.536 362 126 3 1 358 1 360 2.43e-155 447
MsG0680035368.01.T01 MTR_8g068990 59.786 373 127 7 4 371 7 361 6.54e-146 424
MsG0680035368.01.T01 MTR_8g066670 56.236 441 179 7 1 432 1067 1502 1.45e-145 451
MsG0680035368.01.T01 MTR_7g451420 66.458 319 103 3 1 318 1 316 3.61e-143 411
MsG0680035368.01.T01 MTR_8g040930 58.981 373 139 7 52 417 2 367 2.88e-142 411
MsG0680035368.01.T01 MTR_8g041240 58.981 373 139 7 52 417 2 367 2.88e-142 411
MsG0680035368.01.T01 MTR_3g105650 43.836 438 205 8 7 433 3 410 5.61e-114 341
MsG0680035368.01.T01 MTR_8g073275 44.125 417 153 9 52 401 2 405 7.93e-100 306
MsG0680035368.01.T01 MTR_1g069110 27.098 417 249 13 9 403 18 401 2.00e-34 134
MsG0680035368.01.T01 MTR_7g099580 25.714 315 181 8 7 316 10 276 3.48e-23 100
MsG0680035368.01.T01 MTR_1g115575 26.923 338 179 11 12 311 138 445 6.75e-20 92.4
MsG0680035368.01.T01 MTR_7g117620 25.347 288 181 6 44 310 119 393 1.33e-19 91.7
MsG0680035368.01.T01 MTR_7g099570 28.713 202 124 4 2 198 8 194 2.07e-18 88.2
MsG0680035368.01.T01 MTR_2g101320 27.982 218 135 4 37 244 134 339 2.68e-16 81.6
MsG0680035368.01.T01 MTR_8g105260 24.742 291 182 8 44 310 101 378 1.08e-14 76.3
MsG0680035368.01.T01 MTR_7g100390 23.585 424 264 13 12 404 56 450 7.35e-14 73.9
MsG0680035368.01.T01 MTR_7g100430 24.540 326 184 11 42 314 124 440 1.01e-12 70.5
MsG0680035368.01.T01 MTR_2g096190 23.024 291 184 6 45 310 105 380 1.23e-12 70.1
MsG0680035368.01.T01 MTR_2g096190 24.260 169 124 2 2 170 100 264 3.49e-11 65.5
MsG0680035368.01.T01 MTR_2g101310 25.180 278 175 7 40 309 137 389 1.34e-12 70.1
MsG0680035368.01.T01 MTR_2g101310 25.180 278 175 7 40 309 137 389 2.21e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035368.01.T01 AT4G10720 37.150 428 231 8 8 414 4 414 9.57e-88 274
MsG0680035368.01.T01 AT1G14480 32.874 435 265 4 8 432 4 421 3.50e-79 252
MsG0680035368.01.T01 AT4G10720 38.251 366 203 5 8 365 4 354 4.32e-78 248
MsG0680035368.01.T01 AT5G15500 34.713 435 263 7 5 430 2 424 2.23e-77 248
MsG0680035368.01.T01 AT1G14500 34.223 412 239 6 8 409 4 393 3.07e-75 242
MsG0680035368.01.T01 AT5G54620 36.000 425 225 9 7 414 3 397 5.55e-75 241
MsG0680035368.01.T01 AT5G54610 38.333 300 170 6 14 304 10 303 2.58e-66 218
MsG0680035368.01.T01 AT1G14480 31.690 426 239 6 8 432 4 378 2.15e-62 207
MsG0680035368.01.T01 AT5G15500 30.303 330 209 7 110 430 1 318 4.71e-36 136
MsG0680035368.01.T01 AT5G51160 27.848 395 238 11 41 404 13 391 8.05e-30 120
MsG0680035368.01.T01 AT1G34050 25.272 368 207 13 65 404 174 501 2.39e-19 90.9
MsG0680035368.01.T01 AT3G09550 27.545 334 182 11 12 311 157 464 1.14e-18 89.0
MsG0680035368.01.T01 AT3G09550 27.545 334 182 11 12 311 150 457 1.21e-18 89.0
MsG0680035368.01.T01 AT3G09550 27.545 334 182 11 12 311 150 457 1.21e-18 89.0
MsG0680035368.01.T01 AT4G03500 25.956 366 204 14 71 416 253 571 1.08e-17 85.9
MsG0680035368.01.T01 AT4G03500 25.956 366 204 14 71 416 253 571 1.08e-17 85.9
MsG0680035368.01.T01 AT4G03500 25.745 369 201 14 71 416 276 594 1.08e-17 85.9
MsG0680035368.01.T01 AT2G01680 22.481 387 236 9 14 366 57 413 9.68e-17 82.8
MsG0680035368.01.T01 AT5G54710 26.230 366 213 12 65 401 187 524 2.30e-16 81.6
MsG0680035368.01.T01 AT5G54710 26.230 366 213 12 65 401 232 569 2.87e-16 81.6
MsG0680035368.01.T01 AT1G10340 26.182 275 147 8 79 314 171 428 4.66e-16 80.9
MsG0680035368.01.T01 AT1G10340 26.182 275 147 8 79 314 175 432 5.13e-16 80.9
MsG0680035368.01.T01 AT2G24600 26.692 266 157 7 79 314 175 432 7.26e-16 80.1
MsG0680035368.01.T01 AT2G24600 26.692 266 157 7 79 314 175 432 7.26e-16 80.1
MsG0680035368.01.T01 AT2G24600 26.692 266 157 7 79 314 175 432 7.34e-16 80.1
MsG0680035368.01.T01 AT2G24600 26.692 266 157 7 79 314 175 432 7.34e-16 80.1
MsG0680035368.01.T01 AT3G12360 26.159 302 164 8 44 311 155 431 1.22e-15 79.7
MsG0680035368.01.T01 AT3G12360 26.159 302 164 8 44 311 167 443 1.30e-15 79.3
MsG0680035368.01.T01 AT4G03460 26.966 267 162 6 102 366 260 495 4.15e-15 77.8
MsG0680035368.01.T01 AT5G02620 22.378 429 273 12 9 404 60 461 4.15e-15 77.8
MsG0680035368.01.T01 AT5G02620 22.378 429 273 12 9 404 60 461 4.15e-15 77.8
MsG0680035368.01.T01 AT5G02620 22.378 429 273 12 9 404 60 461 4.15e-15 77.8
MsG0680035368.01.T01 AT4G03460 26.966 267 162 6 102 366 292 527 4.65e-15 77.8
MsG0680035368.01.T01 AT1G05640 25.234 321 197 9 21 310 157 465 2.24e-14 75.9
MsG0680035368.01.T01 AT2G31820 24.540 326 193 9 21 310 193 501 6.30e-14 74.3
MsG0680035368.01.T01 AT5G02620 22.124 452 269 14 9 404 60 484 1.90e-13 72.8
MsG0680035368.01.T01 AT5G02620 22.124 452 269 14 9 404 60 484 1.90e-13 72.8
MsG0680035368.01.T01 AT1G03670 25.074 339 186 12 86 405 264 553 2.41e-13 72.4
MsG0680035368.01.T01 AT1G07710 24.383 324 209 8 9 310 70 379 1.27e-12 70.1
MsG0680035368.01.T01 AT1G07710 24.383 324 209 8 9 310 70 379 1.27e-12 70.1
MsG0680035368.01.T01 AT5G60070 21.750 400 270 11 12 404 115 478 1.56e-12 69.7

Find 78 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTGTGGTTTGAAAGAAAA+TGG 0.181933 6:+103474549 MsG0680035368.01.T01:three_prime_UTR
GACATTGTTGTCAGACAATT+TGG 0.206630 6:-103474403 None:intergenic
CAGGCCCTTCAAGTACTTCT+TGG 0.237371 6:+103472974 MsG0680035368.01.T01:CDS
TCATAATTTCAGTGGCAAAT+TGG 0.275256 6:-103472667 None:intergenic
CTGAAAGCTGCAGCTGAATC+AGG 0.329052 6:+103472530 MsG0680035368.01.T01:CDS
CTAACCCCAACTGGGATAAT+AGG 0.331029 6:+103474185 MsG0680035368.01.T01:CDS
CTCACTAATGTGTGGAATAT+AGG 0.348716 6:-103472460 None:intergenic
CAAAGGACAAACAAAATTAC+TGG 0.362816 6:-103474227 None:intergenic
CTTTGCACATCGCTGCATCT+AGG 0.375293 6:+103472636 MsG0680035368.01.T01:CDS
GGGACTCACTATTGATTGAT+AGG 0.376538 6:-103473985 None:intergenic
AAACAAAAGGAAATCATATT+CGG 0.401003 6:-103474140 None:intergenic
CTCAAGCATTCAATGGATTC+CGG 0.412196 6:-103472902 None:intergenic
CCCTTCAAGTACTTCTTGGT+TGG 0.412618 6:+103472978 MsG0680035368.01.T01:CDS
ATAGTTTGTCTAACCCCAAC+TGG 0.413642 6:+103474176 MsG0680035368.01.T01:CDS
GACCGCCTATTATCCCAGTT+GGG 0.419656 6:-103474190 None:intergenic
TTTGCACATCGCTGCATCTA+GGG 0.428177 6:+103472637 MsG0680035368.01.T01:CDS
TCTCACACTCAAGCATTCAA+TGG 0.429504 6:-103472909 None:intergenic
ATTATTACCCGAGGAAATGC+TGG 0.440423 6:+103474074 MsG0680035368.01.T01:CDS
AAAGACTTGTATAAATTTGA+AGG 0.440941 6:+103473710 MsG0680035368.01.T01:CDS
ACATACGCAGCTTCCGTTGA+AGG 0.442832 6:-103474361 None:intergenic
TGCAAAGGAGTTTCAACAAA+TGG 0.447385 6:-103472620 None:intergenic
CTTTAGAAGAAATATATTAG+AGG 0.452706 6:+103473914 MsG0680035368.01.T01:CDS
GTCAGACAATTTGGCACCAA+TGG 0.454523 6:-103474394 None:intergenic
TGTCAAGAATGAAAAGTTCC+AGG 0.462154 6:+103472955 MsG0680035368.01.T01:CDS
GAATATACGTGTATTAATTG+TGG 0.469920 6:+103474534 MsG0680035368.01.T01:three_prime_UTR
TTTAGCTTCCAAGAAAATGA+AGG 0.469976 6:-103472698 None:intergenic
GGTAATAATAGTAGAATTTG+AGG 0.473471 6:-103474060 None:intergenic
TGCCATAATTGATAAACAAA+AGG 0.474400 6:-103474153 None:intergenic
TTGATAAGAATGATGGATGC+AGG 0.477345 6:-103474278 None:intergenic
AAGAAAATATTATTAAATGT+TGG 0.492021 6:+103473786 MsG0680035368.01.T01:CDS
CGAGAGAGGTGCAAAAGAGC+TGG 0.502941 6:+103473015 MsG0680035368.01.T01:CDS
CCGATCTCCCAGCATTTCCT+CGG 0.503689 6:-103474082 None:intergenic
GGTAGCATAGACTCGATTGT+TGG 0.507317 6:+103473686 MsG0680035368.01.T01:intron
AGAATTAATAAGTGAACCAC+AGG 0.512346 6:+103473096 MsG0680035368.01.T01:CDS
TACACCGTTGATAAGAATGA+TGG 0.512928 6:-103474285 None:intergenic
AGACCGCCTATTATCCCAGT+TGG 0.521623 6:-103474191 None:intergenic
TCTTGGAAGCTAAATGCTGA+AGG 0.524800 6:+103472707 MsG0680035368.01.T01:CDS
CCGAGGAAATGCTGGGAGAT+CGG 0.529327 6:+103474082 MsG0680035368.01.T01:CDS
ATCCATCTTGCTATGCAAAA+CGG 0.531789 6:+103472740 MsG0680035368.01.T01:CDS
AAAGAACTTGTTAAAGTGCA+AGG 0.532557 6:+103472800 MsG0680035368.01.T01:CDS
GCCAACCAAGAAGTACTTGA+AGG 0.535702 6:-103472979 None:intergenic
CTCAAAACAAATTGCGAGAG+AGG 0.539413 6:+103473001 MsG0680035368.01.T01:CDS
GTTAAAGTGCAAGGAAGAGA+AGG 0.540804 6:+103472809 MsG0680035368.01.T01:CDS
TCATACATGAACACATATGA+TGG 0.541804 6:+103472500 MsG0680035368.01.T01:exon
ATTTGACTTGCAAAATGAAG+AGG 0.542519 6:-103472839 None:intergenic
GCAAAACGGTCAAACAATGA+TGG 0.544713 6:+103472754 MsG0680035368.01.T01:CDS
GTATCACTGACTTCTGAGGC+AGG 0.546924 6:-103473816 None:intergenic
CAAGAAGTACTTGAAGGGCC+TGG 0.547051 6:-103472973 None:intergenic
CGATCTCCCAGCATTTCCTC+GGG 0.547198 6:-103474081 None:intergenic
TTTCAACATCATAATTTCAG+TGG 0.552567 6:-103472675 None:intergenic
TTAGACATTGCAACTACAGC+AGG 0.553641 6:+103473759 MsG0680035368.01.T01:CDS
GTATGTCTTAGTTAAACCAT+TGG 0.556258 6:+103474378 MsG0680035368.01.T01:exon
CTAAATCAGAAGGATGAGGC+AGG 0.569601 6:+103473049 MsG0680035368.01.T01:CDS
TTAGCCTGATAAACTCCACC+AGG 0.571244 6:-103474008 None:intergenic
TAGAGGAGCAACGTAACACT+TGG 0.572878 6:+103473931 MsG0680035368.01.T01:CDS
TTTGCATAGCAAGATGGATG+GGG 0.573527 6:-103472736 None:intergenic
TCTTAGTCTATCTGCAAGTG+TGG 0.575281 6:-103473841 None:intergenic
AAACAAAATACTAAATCAGA+AGG 0.579530 6:+103473039 MsG0680035368.01.T01:CDS
TGATAAGAATGATGGATGCA+GGG 0.583809 6:-103474277 None:intergenic
AATACTAAATCAGAAGGATG+AGG 0.585811 6:+103473045 MsG0680035368.01.T01:CDS
TTGCACATCGCTGCATCTAG+GGG 0.586343 6:+103472638 MsG0680035368.01.T01:CDS
TTTACTTCATATGACTACGT+TGG 0.587532 6:+103474328 MsG0680035368.01.T01:CDS
ACCGCCTATTATCCCAGTTG+GGG 0.588488 6:-103474189 None:intergenic
TTATTACCCGAGGAAATGCT+GGG 0.605752 6:+103474075 MsG0680035368.01.T01:CDS
GCATCCATCATTCTTATCAA+CGG 0.613946 6:+103474281 MsG0680035368.01.T01:CDS
CTAGATGCAGCGATGTGCAA+AGG 0.614402 6:-103472635 None:intergenic
CTTAGTCTATCTGCAAGTGT+GGG 0.615195 6:-103473840 None:intergenic
TGGAGTACTCTAGCCTTCAA+CGG 0.636214 6:+103474348 MsG0680035368.01.T01:CDS
CCAACCAAGAAGTACTTGAA+GGG 0.638063 6:-103472978 None:intergenic
GGGAGTATCACTGACTTCTG+AGG 0.643167 6:-103473820 None:intergenic
TAGTTTGTCTAACCCCAACT+GGG 0.646288 6:+103474177 MsG0680035368.01.T01:CDS
CCATAGAAAATAGATAGCAA+AGG 0.646305 6:-103474244 None:intergenic
AATTCTACTATTATTACCCG+AGG 0.646609 6:+103474065 MsG0680035368.01.T01:CDS
GATAAGAATGATGGATGCAG+GGG 0.668500 6:-103474276 None:intergenic
ACCCCAACTGGGATAATAGG+CGG 0.675508 6:+103474188 MsG0680035368.01.T01:CDS
TAGCCTGATAAACTCCACCA+GGG 0.689510 6:-103474007 None:intergenic
AGCCTGATAAACTCCACCAG+GGG 0.703709 6:-103474006 None:intergenic
GCCTGATAAACTCCACCAGG+GGG 0.703826 6:-103474005 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAATATTATTAAATGT+TGG + Chr6:103473786-103473805 MsG0680035368.01.T01:CDS 10.0%
!! TTTATTTATTTATGATTACT+TGG + Chr6:103473665-103473684 MsG0680035368.01.T01:intron 10.0%
!! AAACAAAAGGAAATCATATT+CGG - Chr6:103474143-103474162 None:intergenic 20.0%
!! AAACAAAATACTAAATCAGA+AGG + Chr6:103473039-103473058 MsG0680035368.01.T01:CDS 20.0%
!! AAAGACTTGTATAAATTTGA+AGG + Chr6:103473710-103473729 MsG0680035368.01.T01:CDS 20.0%
!! AATTAGAAAATAACACATCA+AGG + Chr6:103473181-103473200 MsG0680035368.01.T01:intron 20.0%
!!! ATGTGTTATTTTCTAATTGA+GGG - Chr6:103473179-103473198 None:intergenic 20.0%
!!! CTTTAGAAGAAATATATTAG+AGG + Chr6:103473914-103473933 MsG0680035368.01.T01:CDS 20.0%
!!! TTCCTTTTGTTTATCAATTA+TGG + Chr6:103474151-103474170 MsG0680035368.01.T01:CDS 20.0%
! AAATTTGAAGGCAAAAAACT+TGG + Chr6:103473722-103473741 MsG0680035368.01.T01:CDS 25.0%
! AATAGTACATTGAAAATACG+TGG + Chr6:103473525-103473544 MsG0680035368.01.T01:intron 25.0%
! AATTGTGGTTTGAAAGAAAA+TGG + Chr6:103474549-103474568 MsG0680035368.01.T01:three_prime_UTR 25.0%
! GAATATACGTGTATTAATTG+TGG + Chr6:103474534-103474553 MsG0680035368.01.T01:three_prime_UTR 25.0%
! GAGTTGAAAAAATAAGGAAT+TGG - Chr6:103474121-103474140 None:intergenic 25.0%
! GGTAATAATAGTAGAATTTG+AGG - Chr6:103474063-103474082 None:intergenic 25.0%
! TATTCGGAGTTGAAAAAATA+AGG - Chr6:103474127-103474146 None:intergenic 25.0%
! TCTATATGCTCAAAAATAGA+TGG - Chr6:103472593-103472612 None:intergenic 25.0%
! TGCCATAATTGATAAACAAA+AGG - Chr6:103474156-103474175 None:intergenic 25.0%
! TTTAGTCACTAAATTCCAAA+TGG + Chr6:103473246-103473265 MsG0680035368.01.T01:intron 25.0%
! TTTCAACATCATAATTTCAG+TGG - Chr6:103472678-103472697 None:intergenic 25.0%
!! GCTAATTCTTTACTTTAAAG+TGG - Chr6:103473280-103473299 None:intergenic 25.0%
!! TTTTGTTACAAAATACAACG+TGG + Chr6:103473560-103473579 MsG0680035368.01.T01:intron 25.0%
!!! GATGTGTTATTTTCTAATTG+AGG - Chr6:103473180-103473199 None:intergenic 25.0%
!!! TGTGTTATTTTCTAATTGAG+GGG - Chr6:103473178-103473197 None:intergenic 25.0%
AAACACTTTGTAAATGACTC+TGG + Chr6:103473209-103473228 MsG0680035368.01.T01:intron 30.0%
AATACTAAATCAGAAGGATG+AGG + Chr6:103473045-103473064 MsG0680035368.01.T01:CDS 30.0%
AATTCTACTATTATTACCCG+AGG + Chr6:103474065-103474084 MsG0680035368.01.T01:CDS 30.0%
AGAATTAATAAGTGAACCAC+AGG + Chr6:103473096-103473115 MsG0680035368.01.T01:CDS 30.0%
CAAAGGACAAACAAAATTAC+TGG - Chr6:103474230-103474249 None:intergenic 30.0%
CCATAGAAAATAGATAGCAA+AGG - Chr6:103474247-103474266 None:intergenic 30.0%
GTATGTCTTAGTTAAACCAT+TGG + Chr6:103474378-103474397 MsG0680035368.01.T01:exon 30.0%
TAATCTAATGTCATTGCACA+AGG - Chr6:103473125-103473144 None:intergenic 30.0%
TCATAATTTCAGTGGCAAAT+TGG - Chr6:103472670-103472689 None:intergenic 30.0%
TCATACATGAACACATATGA+TGG + Chr6:103472500-103472519 MsG0680035368.01.T01:exon 30.0%
TTTACTTCATATGACTACGT+TGG + Chr6:103474328-103474347 MsG0680035368.01.T01:CDS 30.0%
! CTTCATTTTGCAAGTCAAAT+TGG + Chr6:103472842-103472861 MsG0680035368.01.T01:CDS 30.0%
! TGTTGAAACCTTCATTTTCT+TGG + Chr6:103472690-103472709 MsG0680035368.01.T01:CDS 30.0%
! TTTAGCTTCCAAGAAAATGA+AGG - Chr6:103472701-103472720 None:intergenic 30.0%
!! AAAGAACTTGTTAAAGTGCA+AGG + Chr6:103472800-103472819 MsG0680035368.01.T01:CDS 30.0%
!! ATTTGACTTGCAAAATGAAG+AGG - Chr6:103472842-103472861 None:intergenic 30.0%
!! CCTTTGCTATCTATTTTCTA+TGG + Chr6:103474244-103474263 MsG0680035368.01.T01:CDS 30.0%
!!! ATCAACGGTGTATTTTTAGT+TGG + Chr6:103474296-103474315 MsG0680035368.01.T01:CDS 30.0%
!!! TTTTTTCTCTCACTAATGTG+TGG - Chr6:103472471-103472490 None:intergenic 30.0%
CATGAACGTTCTCTAACAAA+TGG + Chr6:103473636-103473655 MsG0680035368.01.T01:intron 35.0%
CTCACTAATGTGTGGAATAT+AGG - Chr6:103472463-103472482 None:intergenic 35.0%
GACATTGTTGTCAGACAATT+TGG - Chr6:103474406-103474425 None:intergenic 35.0%
GCATCCATCATTCTTATCAA+CGG + Chr6:103474281-103474300 MsG0680035368.01.T01:CDS 35.0%
TGCAAAGGAGTTTCAACAAA+TGG - Chr6:103472623-103472642 None:intergenic 35.0%
TGTCAAGAATGAAAAGTTCC+AGG + Chr6:103472955-103472974 MsG0680035368.01.T01:CDS 35.0%
! AAGCTTTCTCTTTTCTTGTC+CGG + Chr6:103472883-103472902 MsG0680035368.01.T01:CDS 35.0%
! ATCCATCTTGCTATGCAAAA+CGG + Chr6:103472740-103472759 MsG0680035368.01.T01:CDS 35.0%
! TACACCGTTGATAAGAATGA+TGG - Chr6:103474288-103474307 None:intergenic 35.0%
! TGTCACATTTTCTTGTATCG+TGG - Chr6:103473880-103473899 None:intergenic 35.0%
! TTTTGCAAGTCAAATTGGTG+AGG + Chr6:103472847-103472866 MsG0680035368.01.T01:CDS 35.0%
! TTTTGCATAGCAAGATGGAT+GGG - Chr6:103472740-103472759 None:intergenic 35.0%
!! TGATAAGAATGATGGATGCA+GGG - Chr6:103474280-103474299 None:intergenic 35.0%
!! TTGATAAGAATGATGGATGC+AGG - Chr6:103474281-103474300 None:intergenic 35.0%
AAAGTGGTCTGCATTCCATT+TGG - Chr6:103473264-103473283 None:intergenic 40.0%
ATTATTACCCGAGGAAATGC+TGG + Chr6:103474074-103474093 MsG0680035368.01.T01:CDS 40.0%
CTCAAAACAAATTGCGAGAG+AGG + Chr6:103473001-103473020 MsG0680035368.01.T01:CDS 40.0%
CTTAGTCTATCTGCAAGTGT+GGG - Chr6:103473843-103473862 None:intergenic 40.0%
GCAAAACGGTCAAACAATGA+TGG + Chr6:103472754-103472773 MsG0680035368.01.T01:CDS 40.0%
GTTAAAGTGCAAGGAAGAGA+AGG + Chr6:103472809-103472828 MsG0680035368.01.T01:CDS 40.0%
TCTCACACTCAAGCATTCAA+TGG - Chr6:103472912-103472931 None:intergenic 40.0%
TCTTAGTCTATCTGCAAGTG+TGG - Chr6:103473844-103473863 None:intergenic 40.0%
TCTTGGAAGCTAAATGCTGA+AGG + Chr6:103472707-103472726 MsG0680035368.01.T01:CDS 40.0%
TTAGACATTGCAACTACAGC+AGG + Chr6:103473759-103473778 MsG0680035368.01.T01:CDS 40.0%
TTATTACCCGAGGAAATGCT+GGG + Chr6:103474075-103474094 MsG0680035368.01.T01:CDS 40.0%
TTTGCATAGCAAGATGGATG+GGG - Chr6:103472739-103472758 None:intergenic 40.0%
! ATAGTTTGTCTAACCCCAAC+TGG + Chr6:103474176-103474195 MsG0680035368.01.T01:CDS 40.0%
! CTCAAGCATTCAATGGATTC+CGG - Chr6:103472905-103472924 None:intergenic 40.0%
! GGGACTCACTATTGATTGAT+AGG - Chr6:103473988-103474007 None:intergenic 40.0%
! GTTTTGCATAGCAAGATGGA+TGG - Chr6:103472741-103472760 None:intergenic 40.0%
! TAGTTTGTCTAACCCCAACT+GGG + Chr6:103474177-103474196 MsG0680035368.01.T01:CDS 40.0%
!! CCAACCAAGAAGTACTTGAA+GGG - Chr6:103472981-103473000 None:intergenic 40.0%
!! GATAAGAATGATGGATGCAG+GGG - Chr6:103474279-103474298 None:intergenic 40.0%
CCCTTCAAGTACTTCTTGGT+TGG + Chr6:103472978-103472997 MsG0680035368.01.T01:CDS 45.0%
CTAAATCAGAAGGATGAGGC+AGG + Chr6:103473049-103473068 MsG0680035368.01.T01:CDS 45.0%
CTAACCCCAACTGGGATAAT+AGG + Chr6:103474185-103474204 MsG0680035368.01.T01:CDS 45.0%
GGTAGCATAGACTCGATTGT+TGG + Chr6:103473686-103473705 MsG0680035368.01.T01:intron 45.0%
GTCAGACAATTTGGCACCAA+TGG - Chr6:103474397-103474416 None:intergenic 45.0%
TAGAGGAGCAACGTAACACT+TGG + Chr6:103473931-103473950 MsG0680035368.01.T01:CDS 45.0%
TAGCCTGATAAACTCCACCA+GGG - Chr6:103474010-103474029 None:intergenic 45.0%
TCATTGCACAAGGTTACCTG+TGG - Chr6:103473115-103473134 None:intergenic 45.0%
TTAGCCTGATAAACTCCACC+AGG - Chr6:103474011-103474030 None:intergenic 45.0%
TTTGCACATCGCTGCATCTA+GGG + Chr6:103472637-103472656 MsG0680035368.01.T01:CDS 45.0%
! GACCGTTTTGCATAGCAAGA+TGG - Chr6:103472745-103472764 None:intergenic 45.0%
! TGGAGTACTCTAGCCTTCAA+CGG + Chr6:103474348-103474367 MsG0680035368.01.T01:CDS 45.0%
!! GCCAACCAAGAAGTACTTGA+AGG - Chr6:103472982-103473001 None:intergenic 45.0%
ACATACGCAGCTTCCGTTGA+AGG - Chr6:103474364-103474383 None:intergenic 50.0%
ACCCCAACTGGGATAATAGG+CGG + Chr6:103474188-103474207 MsG0680035368.01.T01:CDS 50.0%
ACCGCCTATTATCCCAGTTG+GGG - Chr6:103474192-103474211 None:intergenic 50.0%
AGACCGCCTATTATCCCAGT+TGG - Chr6:103474194-103474213 None:intergenic 50.0%
AGCCTGATAAACTCCACCAG+GGG - Chr6:103474009-103474028 None:intergenic 50.0%
CAATCAATAGTGAGTCCCCC+TGG + Chr6:103473990-103474009 MsG0680035368.01.T01:CDS 50.0%
CAGGCCCTTCAAGTACTTCT+TGG + Chr6:103472974-103472993 MsG0680035368.01.T01:CDS 50.0%
CTAGATGCAGCGATGTGCAA+AGG - Chr6:103472638-103472657 None:intergenic 50.0%
CTGAAAGCTGCAGCTGAATC+AGG + Chr6:103472530-103472549 MsG0680035368.01.T01:CDS 50.0%
CTTTGCACATCGCTGCATCT+AGG + Chr6:103472636-103472655 MsG0680035368.01.T01:CDS 50.0%
GACCGCCTATTATCCCAGTT+GGG - Chr6:103474193-103474212 None:intergenic 50.0%
TTGCACATCGCTGCATCTAG+GGG + Chr6:103472638-103472657 MsG0680035368.01.T01:CDS 50.0%
!! CAAGAAGTACTTGAAGGGCC+TGG - Chr6:103472976-103472995 None:intergenic 50.0%
!! GGGAGTATCACTGACTTCTG+AGG - Chr6:103473823-103473842 None:intergenic 50.0%
!! GTATCACTGACTTCTGAGGC+AGG - Chr6:103473819-103473838 None:intergenic 50.0%
CCGAGGAAATGCTGGGAGAT+CGG + Chr6:103474082-103474101 MsG0680035368.01.T01:CDS 55.0%
CCGATCTCCCAGCATTTCCT+CGG - Chr6:103474085-103474104 None:intergenic 55.0%
CGATCTCCCAGCATTTCCTC+GGG - Chr6:103474084-103474103 None:intergenic 55.0%
GCCTGATAAACTCCACCAGG+GGG - Chr6:103474008-103474027 None:intergenic 55.0%
TCAATAGTGAGTCCCCCTGG+TGG + Chr6:103473993-103474012 MsG0680035368.01.T01:CDS 55.0%
TCCCCCTGGTGGAGTTTATC+AGG + Chr6:103474004-103474023 MsG0680035368.01.T01:CDS 55.0%
! CGAGAGAGGTGCAAAAGAGC+TGG + Chr6:103473015-103473034 MsG0680035368.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr6 gene 103472442 103474577 103472442 ID=MsG0680035368.01;Name=MsG0680035368.01
Chr6 mRNA 103472442 103474577 103472442 ID=MsG0680035368.01.T01;Parent=MsG0680035368.01;Name=MsG0680035368.01.T01;_AED=0.49;_eAED=0.49;_QI=64|1|1|1|1|1|2|189|434
Chr6 exon 103472442 103473117 103472442 ID=MsG0680035368.01.T01:exon:11081;Parent=MsG0680035368.01.T01
Chr6 exon 103473696 103474577 103473696 ID=MsG0680035368.01.T01:exon:11082;Parent=MsG0680035368.01.T01
Chr6 five_prime_UTR 103472442 103472505 103472442 ID=MsG0680035368.01.T01:five_prime_utr;Parent=MsG0680035368.01.T01
Chr6 CDS 103472506 103473117 103472506 ID=MsG0680035368.01.T01:cds;Parent=MsG0680035368.01.T01
Chr6 CDS 103473696 103474388 103473696 ID=MsG0680035368.01.T01:cds;Parent=MsG0680035368.01.T01
Chr6 three_prime_UTR 103474389 103474577 103474389 ID=MsG0680035368.01.T01:three_prime_utr;Parent=MsG0680035368.01.T01
Gene Sequence

>MsG0680035368.01.T01

ATGAACACATATGATGGTGAGCAGCTGAAAGCTGCAGCTGAATCAGGTGATATAAATCTTCTCTACACTGTAATTCGAAATGATCCATCTATTTTTGAGCATATAGATTTGATACCATTTGTTGAAACTCCTTTGCACATCGCTGCATCTAGGGGTCATCTCCAATTTGCCACTGAAATTATGATGTTGAAACCTTCATTTTCTTGGAAGCTAAATGCTGAAGGATTCAGCCCCATCCATCTTGCTATGCAAAACGGTCAAACAATGATGGTATCTCGCTTTGTTAACATTAATAAAGAACTTGTTAAAGTGCAAGGAAGAGAAGGATTAACTCCTCTTCATTTTGCAAGTCAAATTGGTGAGGTTGATCTTTTAGCAAGCTTTCTCTTTTCTTGTCCGGAATCCATTGAATGCTTGAGTGTGAGACAAGAGACTGCACTGCATATTGCTGTCAAGAATGAAAAGTTCCAGGCCCTTCAAGTACTTCTTGGTTGGCTCAAAACAAATTGCGAGAGAGGTGCAAAAGAGCTGGAAAACAAAATACTAAATCAGAAGGATGAGGCAGGCAATACTATATTGCACATTTCAGCAGAATTAATAAGTGAACCACAGACTCGATTGTTGGTAAAGACTTGTATAAATTTGAAGGCAAAAAACTTGGAGAACAAAACAGCATTAGACATTGCAACTACAGCAGGAATCAAGAAAATATTATTAAATGTTGGAGCGAAACCTGCCTCAGAAGTCAGTGATACTCCCACACTTGCAGATAGACTAAGATTAAGATCAAACACCACGATACAAGAAAATGTGACAATTTTTATGAGTCGCTTTAGAAGAAATATATTAGAGGAGCAACGTAACACTTGGTTGATAATTGCGACTCTTGTTGCGACTGCAACCTATCAATCAATAGTGAGTCCCCCTGGTGGAGTTTATCAGGCTAATGCTAGTGACAACACTGTGAACATCACTTCCTCAAATTCTACTATTATTACCCGAGGAAATGCTGGGAGATCGGTATTGTCAACACGCCAATTCCTTATTTTTTCAACTCCGAATATGATTTCCTTTTGTTTATCAATTATGGCAATAGTTTGTCTAACCCCAACTGGGATAATAGGCGGTCTATTAGTGTGCATTCCAGTAATTTTGTTTGTCCTTTGCTATCTATTTTCTATGGCTATTATTTCCCCTGCATCCATCATTCTTATCAACGGTGTATTTTTAGTTGGATTTTTCAGTTTACTTCATATGACTACGTTGGAGTACTCTAGCCTTCAACGGAAGCTGCGTATGTCTTAG

Protein sequence

>MsG0680035368.01.T01

MNTYDGEQLKAAAESGDINLLYTVIRNDPSIFEHIDLIPFVETPLHIAASRGHLQFATEIMMLKPSFSWKLNAEGFSPIHLAMQNGQTMMVSRFVNINKELVKVQGREGLTPLHFASQIGEVDLLASFLFSCPESIECLSVRQETALHIAVKNEKFQALQVLLGWLKTNCERGAKELENKILNQKDEAGNTILHISAELISEPQTRLLVKTCINLKAKNLENKTALDIATTAGIKKILLNVGAKPASEVSDTPTLADRLRLRSNTTIQENVTIFMSRFRRNILEEQRNTWLIIATLVATATYQSIVSPPGGVYQANASDNTVNITSSNSTIITRGNAGRSVLSTRQFLIFSTPNMISFCLSIMAIVCLTPTGIIGGLLVCIPVILFVLCYLFSMAIISPASIILINGVFLVGFFSLLHMTTLEYSSLQRKLRMS*