AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038230.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038230.01.T01 MTR_7g451420 96.474 312 11 0 1 312 1 312 0.0 618
MsG0780038230.01.T01 MTR_8g072510 61.737 426 162 1 2 427 3 427 0.0 521
MsG0780038230.01.T01 MTR_8g066670 64.286 420 143 4 1 415 1067 1484 7.20e-176 531
MsG0780038230.01.T01 MTR_3g016210 58.864 440 156 5 2 425 3 433 8.84e-172 489
MsG0780038230.01.T01 MTR_8g039620 59.390 426 170 1 5 427 10 435 1.83e-171 488
MsG0780038230.01.T01 MTR_8g062410 61.449 428 155 4 2 427 3 422 2.17e-169 483
MsG0780038230.01.T01 MTR_8g467780 62.095 401 141 3 8 397 10 410 6.21e-168 479
MsG0780038230.01.T01 MTR_8g069880 60.417 432 158 5 4 428 2 427 5.59e-167 477
MsG0780038230.01.T01 MTR_7g021090 61.139 404 146 5 1 399 1 398 7.36e-161 460
MsG0780038230.01.T01 MTR_8g073260 55.294 425 183 6 8 429 10 430 4.94e-154 444
MsG0780038230.01.T01 MTR_1g059930 66.006 353 119 1 6 357 9 361 1.52e-151 437
MsG0780038230.01.T01 MTR_8g040930 59.626 374 147 2 52 422 2 374 5.08e-151 434
MsG0780038230.01.T01 MTR_8g041240 59.626 374 147 2 52 422 2 374 5.08e-151 434
MsG0780038230.01.T01 MTR_8g068990 61.662 373 124 4 6 374 9 366 1.49e-149 433
MsG0780038230.01.T01 MTR_3g105650 44.755 429 191 6 7 426 3 394 8.14e-115 343
MsG0780038230.01.T01 MTR_8g073275 44.053 454 168 10 52 433 2 441 1.20e-107 326
MsG0780038230.01.T01 MTR_1g069110 25.499 451 276 12 1 423 5 423 3.68e-24 104
MsG0780038230.01.T01 MTR_7g117620 29.167 264 166 6 9 267 85 332 4.32e-19 90.1
MsG0780038230.01.T01 MTR_7g117620 26.846 149 107 1 4 152 149 295 8.04e-11 64.3
MsG0780038230.01.T01 MTR_7g099570 27.236 246 165 3 1 241 1 237 1.60e-16 82.4
MsG0780038230.01.T01 MTR_2g096190 24.615 325 206 7 9 308 70 380 3.85e-16 80.9
MsG0780038230.01.T01 MTR_2g096190 24.590 183 127 2 5 187 101 272 5.79e-11 64.7
MsG0780038230.01.T01 MTR_1g115575 26.748 329 189 11 12 309 138 445 2.17e-15 78.6
MsG0780038230.01.T01 MTR_4g062100 27.341 267 169 6 9 267 74 323 2.56e-15 78.6
MsG0780038230.01.T01 MTR_4g062100 26.415 159 115 1 4 162 138 294 9.02e-11 64.3
MsG0780038230.01.T01 MTR_7g099580 23.077 312 189 6 6 312 9 274 3.14e-15 77.0
MsG0780038230.01.T01 MTR_2g101320 25.483 259 159 6 40 274 137 385 6.85e-15 77.4
MsG0780038230.01.T01 MTR_8g105260 22.190 347 216 8 44 365 101 418 9.44e-13 70.5
MsG0780038230.01.T01 MTR_7g100390 23.342 377 230 10 12 359 56 402 1.04e-12 70.1
MsG0780038230.01.T01 MTR_7g100390 28.324 173 113 5 4 175 117 279 2.13e-12 69.3
MsG0780038230.01.T01 MTR_5g085500 30.189 159 99 4 78 232 8 158 1.94e-11 66.2
MsG0780038230.01.T01 MTR_2g101310 25.940 266 164 7 40 282 137 392 4.11e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038230.01.T01 AT4G10720 34.943 435 237 6 8 425 4 409 1.53e-81 258
MsG0780038230.01.T01 AT4G10720 40.373 322 180 2 8 319 4 323 6.87e-77 245
MsG0780038230.01.T01 AT5G15500 34.023 435 262 8 9 433 6 425 1.18e-67 223
MsG0780038230.01.T01 AT1G14500 33.095 420 232 6 8 399 4 402 3.31e-67 221
MsG0780038230.01.T01 AT1G14480 34.739 403 220 8 8 392 4 381 1.18e-66 219
MsG0780038230.01.T01 AT5G54620 40.260 308 173 3 8 306 4 309 4.18e-66 218
MsG0780038230.01.T01 AT5G54610 31.604 424 237 9 8 417 4 388 8.29e-59 198
MsG0780038230.01.T01 AT1G14480 33.590 390 199 9 8 392 4 338 2.87e-53 183
MsG0780038230.01.T01 AT5G15500 29.641 334 210 8 110 433 1 319 2.52e-31 123
MsG0780038230.01.T01 AT5G51160 27.731 357 222 7 38 367 10 357 8.06e-31 123
MsG0780038230.01.T01 AT2G01680 28.708 209 129 3 44 244 97 293 9.38e-18 85.9
MsG0780038230.01.T01 AT5G54710 23.541 497 281 17 1 429 95 560 2.95e-17 84.7
MsG0780038230.01.T01 AT5G54710 23.541 497 281 17 1 429 140 605 3.23e-17 84.3
MsG0780038230.01.T01 AT4G03500 25.658 304 171 9 9 309 228 479 1.39e-16 82.4
MsG0780038230.01.T01 AT4G03500 25.658 304 171 9 9 309 228 479 1.39e-16 82.4
MsG0780038230.01.T01 AT4G03500 25.658 304 171 9 9 309 251 502 1.79e-16 82.4
MsG0780038230.01.T01 AT1G07710 29.437 231 147 4 9 237 70 286 1.44e-15 79.3
MsG0780038230.01.T01 AT1G07710 29.437 231 147 4 9 237 70 286 1.44e-15 79.3
MsG0780038230.01.T01 AT3G12360 24.675 385 229 11 12 370 124 473 5.06e-15 77.8
MsG0780038230.01.T01 AT3G12360 24.675 385 229 11 12 370 136 485 5.68e-15 77.4
MsG0780038230.01.T01 AT2G24600 26.786 336 180 13 68 366 163 469 4.67e-14 74.7
MsG0780038230.01.T01 AT2G24600 26.786 336 180 13 68 366 163 469 4.67e-14 74.7
MsG0780038230.01.T01 AT2G24600 28.723 282 152 12 68 312 163 432 6.00e-14 74.3
MsG0780038230.01.T01 AT2G24600 28.723 282 152 12 68 312 163 432 6.00e-14 74.3
MsG0780038230.01.T01 AT4G03460 26.733 303 164 10 11 309 206 454 6.28e-14 74.3
MsG0780038230.01.T01 AT4G03460 26.733 303 164 10 11 309 238 486 6.71e-14 74.3
MsG0780038230.01.T01 AT1G05640 24.625 333 201 10 9 312 157 468 1.57e-13 73.2
MsG0780038230.01.T01 AT1G34050 23.175 315 201 6 65 366 174 460 1.77e-13 72.8
MsG0780038230.01.T01 AT1G03670 25.874 286 167 9 88 366 266 513 5.09e-13 71.2
MsG0780038230.01.T01 AT2G31820 22.597 385 244 12 1 359 182 538 5.83e-13 71.2
MsG0780038230.01.T01 AT5G54700 25.806 279 147 8 95 366 17 242 1.11e-12 69.3
MsG0780038230.01.T01 AT5G02620 26.126 222 150 3 9 229 60 268 1.28e-12 70.1
MsG0780038230.01.T01 AT5G02620 26.126 222 150 3 9 229 60 268 1.28e-12 70.1
MsG0780038230.01.T01 AT5G02620 26.126 222 150 3 9 229 60 268 1.28e-12 70.1
MsG0780038230.01.T01 AT4G03480 23.881 335 219 10 12 329 319 634 2.70e-12 69.3
MsG0780038230.01.T01 AT4G03480 23.881 335 219 10 12 329 322 637 2.76e-12 69.3
MsG0780038230.01.T01 AT3G09550 24.299 321 207 6 12 309 157 464 7.47e-12 67.8
MsG0780038230.01.T01 AT3G09550 24.299 321 207 6 12 309 150 457 8.02e-12 67.8
MsG0780038230.01.T01 AT3G09550 24.299 321 207 6 12 309 150 457 8.02e-12 67.8
MsG0780038230.01.T01 AT5G02620 25.381 197 134 2 9 205 60 243 5.77e-11 64.7
MsG0780038230.01.T01 AT5G02620 25.381 197 134 2 9 205 60 243 5.77e-11 64.7
MsG0780038230.01.T01 AT4G03470 22.258 310 202 6 60 365 289 563 7.25e-11 64.7

Find 89 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTCCTTGTTTGCTTTCTT+AGG 0.273063 7:-42420962 MsG0780038230.01.T01:CDS
TTTGTTATACCTTCTCTCTA+TGG 0.281209 7:-42419497 MsG0780038230.01.T01:CDS
TCCCGTTGGTGGAGTTTATC+AGG 0.296151 7:-42419739 MsG0780038230.01.T01:CDS
AAGATCAAAGACGACTATTA+TGG 0.310790 7:-42419877 MsG0780038230.01.T01:CDS
GAGAGCCTACCCTCCCTCTT+GGG 0.317420 7:+42419553 None:intergenic
CTTCGATTGTTGGTAAGTAC+TGG 0.324415 7:-42420041 MsG0780038230.01.T01:CDS
AGCTTTCAGTTTATCAAGAT+TGG 0.345596 7:+42421430 None:intergenic
AGCGAGAAACCATCCTCTTT+TGG 0.350553 7:+42421183 None:intergenic
TGGGGTAGAAATTGTAGAAT+TGG 0.355908 7:+42419680 None:intergenic
CAATTTGAATTACTGCATAA+AGG 0.361525 7:+42421381 None:intergenic
TGCTATAGTTGATAGGAAAA+AGG 0.365866 7:+42419590 None:intergenic
AAAGACCTTGTTCGAGTTCA+AGG 0.377835 7:-42421146 MsG0780038230.01.T01:CDS
CTTTGCATATCGCCGCATCT+AGG 0.387295 7:-42421310 MsG0780038230.01.T01:CDS
AGAGAGCCTACCCTCCCTCT+TGG 0.392316 7:+42419552 None:intergenic
GGGAGTCAGCGTTGATTGAT+AGG 0.399734 7:+42419758 None:intergenic
TTAGTATTGCTATAGTTGAT+AGG 0.404799 7:+42419583 None:intergenic
TCGCATTGAAAGAAATATAT+CGG 0.419160 7:-42419832 MsG0780038230.01.T01:CDS
AGCACAGGCGCTTCGATTGT+TGG 0.422551 7:-42420051 MsG0780038230.01.T01:intron
ATTTGAAACCTTCATTTGCT+TGG 0.424279 7:-42421256 MsG0780038230.01.T01:CDS
TCGTGGCCGGTCCAGTGGTT+TGG 0.430735 7:-42419527 MsG0780038230.01.T01:CDS
TAGCGCAGAAATGTGCAAAA+TGG 0.433480 7:+42420869 None:intergenic
TTTGCATATCGCCGCATCTA+GGG 0.439653 7:-42421309 MsG0780038230.01.T01:CDS
GCATCTCCGGTTTGCCATTG+AGG 0.441755 7:-42421285 MsG0780038230.01.T01:CDS
CGAATCTATAATCTCTAGAA+TGG 0.451551 7:+42421352 None:intergenic
TTTCAAATTCATAACCTCAA+TGG 0.456133 7:+42421271 None:intergenic
CTTCATCTTGCAAGTCAAAT+CGG 0.456236 7:-42421104 MsG0780038230.01.T01:CDS
TTTGCATAGCGAGATGAATT+GGG 0.459972 7:+42421210 None:intergenic
ACCTGATAAACTCCACCAAC+GGG 0.462309 7:+42419738 None:intergenic
GAAACCTTCATTTGCTTGGA+AGG 0.463467 7:-42421252 MsG0780038230.01.T01:CDS
CCCCACAGTCACATCTTGAA+TGG 0.468981 7:+42421037 None:intergenic
TTTACCTTCCAAGCAAATGA+AGG 0.484047 7:+42421248 None:intergenic
TCATAACATTGTCATGTGTA+GGG 0.485277 7:+42419466 None:intergenic
CTGAAAGCTGCAGCTGAAGC+GGG 0.490793 7:-42421416 MsG0780038230.01.T01:CDS
TCATAACCTCAATGGCAAAC+CGG 0.496377 7:+42421279 None:intergenic
GGTAGAAATTGTAGAATTGG+AGG 0.496524 7:+42419683 None:intergenic
AAGAGTATATTATTTAGTGC+TGG 0.498908 7:-42419951 MsG0780038230.01.T01:CDS
CTTAGGAGAAATATCGAAAG+AGG 0.502785 7:-42420945 MsG0780038230.01.T01:CDS
AAAACCTAGCTTAGAAGTCA+TGG 0.503544 7:-42419925 MsG0780038230.01.T01:CDS
CTATGCAAAATGACCAAAAG+AGG 0.517456 7:-42421196 MsG0780038230.01.T01:CDS
GTCACATCTTGAATGGAATC+CGG 0.521024 7:+42421044 None:intergenic
GTAGGCTCTCTAGTCGTGGC+CGG 0.521062 7:-42419540 MsG0780038230.01.T01:CDS
TTGCATATCGCCGCATCTAG+GGG 0.527689 7:-42421308 MsG0780038230.01.T01:CDS
TCAACGCTGACTCCCGTTGG+TGG 0.529986 7:-42419750 MsG0780038230.01.T01:CDS
CGGAGAAGCAACGCAACACT+TGG 0.536689 7:-42419812 MsG0780038230.01.T01:CDS
TCTAGTCGTGGCCGGTCCAG+TGG 0.537934 7:-42419532 MsG0780038230.01.T01:CDS
TCCATTCAAGATGTGACTGT+GGG 0.544369 7:-42421038 MsG0780038230.01.T01:CDS
TTCGATTGTTGGTAAGTACT+GGG 0.548072 7:-42420040 MsG0780038230.01.T01:CDS
TGCGCTATGTAACGAGCCAC+AGG 0.548375 7:-42420853 MsG0780038230.01.T01:intron
ACTGAAAGCTGCAGCTGAAG+CGG 0.553330 7:-42421417 MsG0780038230.01.T01:CDS
ATTTGACTTGCAAGATGAAG+AGG 0.554003 7:+42421107 None:intergenic
AAGACCTTGTTCGAGTTCAA+GGG 0.554891 7:-42421145 MsG0780038230.01.T01:CDS
AGAGCCTACCCTCCCTCTTG+GGG 0.559236 7:+42419554 None:intergenic
ATCATAACATTGTCATGTGT+AGG 0.562014 7:+42419465 None:intergenic
GTTCGAGTTCAAGGGAGAGA+AGG 0.562197 7:-42421137 MsG0780038230.01.T01:CDS
GTTATACCTTCTCTCTATGG+AGG 0.563996 7:-42419494 MsG0780038230.01.T01:CDS
TATACTCTTGTTCTCTAGAG+TGG 0.567180 7:+42419965 None:intergenic
TTCTCCTAAGAAAGCAAACA+AGG 0.575386 7:+42420958 None:intergenic
CTCTCCCTTGAACTCGAACA+AGG 0.580165 7:+42421141 None:intergenic
GCATCCATGACTTCTAAGCT+AGG 0.580948 7:+42419921 None:intergenic
CAAAGGATAAACCAAACCAC+TGG 0.581197 7:+42419516 None:intergenic
GATAAACCAAACCACTGGAC+CGG 0.583284 7:+42419521 None:intergenic
TCTTAGTTTATGTGCAAGTG+TGG 0.599276 7:+42419896 None:intergenic
GCAAAATGACCAAAAGAGGA+TGG 0.601826 7:-42421192 MsG0780038230.01.T01:CDS
CTAGATGCGGCGATATGCAA+AGG 0.606329 7:+42421311 None:intergenic
AATTCTGACCCCAAGAGGGA+GGG 0.609467 7:-42419562 MsG0780038230.01.T01:CDS
CAATCAACGCTGACTCCCGT+TGG 0.612251 7:-42419753 MsG0780038230.01.T01:CDS
AACCTGATAAACTCCACCAA+CGG 0.614968 7:+42419737 None:intergenic
CATACTAAATCACAAGGATG+AGG 0.615450 7:-42420901 MsG0780038230.01.T01:CDS
GAGGGTAGGCTCTCTAGTCG+TGG 0.621651 7:-42419544 MsG0780038230.01.T01:CDS
GGTTATCCTCCATAGAGAGA+AGG 0.628876 7:+42419488 None:intergenic
TGAATTGGGCTGAATCCTTG+CGG 0.630980 7:+42421224 None:intergenic
CATAACATTGTCATGTGTAG+GGG 0.632073 7:+42419467 None:intergenic
CTGACCCCAAGAGGGAGGGT+AGG 0.632450 7:-42419558 MsG0780038230.01.T01:CDS
TAATTCTGACCCCAAGAGGG+AGG 0.634515 7:-42419563 MsG0780038230.01.T01:CDS
CTTAGTTTATGTGCAAGTGT+GGG 0.639068 7:+42419897 None:intergenic
TACTAATTCTGACCCCAAGA+GGG 0.640020 7:-42419566 MsG0780038230.01.T01:CDS
ATACTAATTCTGACCCCAAG+AGG 0.640333 7:-42419567 MsG0780038230.01.T01:CDS
TTCCATTCAAGATGTGACTG+TGG 0.644137 7:-42421039 MsG0780038230.01.T01:CDS
GCTTGGAAGGTAAATCCGCA+AGG 0.645305 7:-42421239 MsG0780038230.01.T01:CDS
CCATTCAAGATGTGACTGTG+GGG 0.654082 7:-42421037 MsG0780038230.01.T01:CDS
TGCATATCGCCGCATCTAGG+GGG 0.655530 7:-42421307 MsG0780038230.01.T01:CDS
CATTCAAGATGTGACTGTGG+GGG 0.655813 7:-42421036 MsG0780038230.01.T01:CDS
ACTCTTGTTCTCTAGAGTGG+CGG 0.656146 7:+42419968 None:intergenic
AGTCAGCGTTGATTGATAGG+TGG 0.659373 7:+42419761 None:intergenic
ATAGAGAGAAGGTATAACAA+AGG 0.665394 7:+42419499 None:intergenic
ATATAACATACTAAATCACA+AGG 0.679043 7:-42420907 MsG0780038230.01.T01:CDS
TGAAACTGCACTGCATATTG+CGG 0.683454 7:-42421012 MsG0780038230.01.T01:CDS
ATTCAAGATGTGACTGTGGG+GGG 0.686049 7:-42421035 MsG0780038230.01.T01:CDS
TCTTGCAAGTCAAATCGGTG+AGG 0.707124 7:-42421099 MsG0780038230.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAGAAATAATATGAAA+GGG + Chr7:42420346-42420365 None:intergenic 10.0%
!!! TTTTTTAAATATTGAAATCT+CGG + Chr7:42420176-42420195 None:intergenic 10.0%
!! CAAAAAAGAAATAATATGAA+AGG + Chr7:42420347-42420366 None:intergenic 15.0%
!! TTTATCTCTTAAGTTATATA+AGG - Chr7:42420059-42420078 MsG0780038230.01.T01:intron 15.0%
!!! GTTATTTAATTTTTATTGAG+AGG + Chr7:42420371-42420390 None:intergenic 15.0%
!! AATGACAACAATTAAAAAAC+AGG + Chr7:42420430-42420449 None:intergenic 20.0%
!! ATATAACATACTAAATCACA+AGG - Chr7:42419907-42419926 MsG0780038230.01.T01:CDS 20.0%
!!! TTTAGTGTACTATAGATTTT+TGG - Chr7:42421426-42421445 MsG0780038230.01.T01:CDS 20.0%
! ACTTCTAAATATATTACACG+AGG + Chr7:42419990-42420009 None:intergenic 25.0%
! AGATACACACATATATGTAA+AGG - Chr7:42420474-42420493 MsG0780038230.01.T01:intron 25.0%
! ATCATGGTTTAATTAGATTG+AGG + Chr7:42420647-42420666 None:intergenic 25.0%
! CAATCTAATTAAACCATGAT+AGG - Chr7:42420647-42420666 MsG0780038230.01.T01:intron 25.0%
! CAATTTGAATTACTGCATAA+AGG + Chr7:42419436-42419455 None:intergenic 25.0%
! GGTGAAAAATAAAAACTTTG+AGG - Chr7:42419823-42419842 MsG0780038230.01.T01:CDS 25.0%
! TCGCATTGAAAGAAATATAT+CGG - Chr7:42420982-42421001 MsG0780038230.01.T01:CDS 25.0%
! TTAGTATTGCTATAGTTGAT+AGG + Chr7:42421234-42421253 None:intergenic 25.0%
! TTTCAAATTCATAACCTCAA+TGG + Chr7:42419546-42419565 None:intergenic 25.0%
!! AAGAGTATATTATTTAGTGC+TGG - Chr7:42420863-42420882 MsG0780038230.01.T01:CDS 25.0%
!! CACATTTTCTTGCAATATAA+AGG + Chr7:42420540-42420559 None:intergenic 25.0%
!!! AATTTTGAAGGCAAAGAATT+TGG - Chr7:42420799-42420818 MsG0780038230.01.T01:intron 25.0%
!!! TAAATTACTTTTTGCATGTC+CGG - Chr7:42419751-42419770 MsG0780038230.01.T01:CDS 25.0%
!!! TTTTTAGTATTGTTGCAACA+GGG - Chr7:42421389-42421408 MsG0780038230.01.T01:CDS 25.0%
!!! TTTTTTAGTATTGTTGCAAC+AGG - Chr7:42421388-42421407 MsG0780038230.01.T01:CDS 25.0%
AAGATCAAAGACGACTATTA+TGG - Chr7:42420937-42420956 MsG0780038230.01.T01:CDS 30.0%
AGCTTTCAGTTTATCAAGAT+TGG + Chr7:42419387-42419406 None:intergenic 30.0%
ATCATAACATTGTCATGTGT+AGG + Chr7:42421352-42421371 None:intergenic 30.0%
CACATATATGTAAAGGACAT+AGG - Chr7:42420481-42420500 MsG0780038230.01.T01:intron 30.0%
TAAATCTTGAGTCGTCAATT+CGG + Chr7:42420094-42420113 None:intergenic 30.0%
TCATAACATTGTCATGTGTA+GGG + Chr7:42421351-42421370 None:intergenic 30.0%
! ATAGAGAGAAGGTATAACAA+AGG + Chr7:42421318-42421337 None:intergenic 30.0%
! ATTTGAAACCTTCATTTGCT+TGG - Chr7:42419558-42419577 MsG0780038230.01.T01:CDS 30.0%
! CGAATCTATAATCTCTAGAA+TGG + Chr7:42419465-42419484 None:intergenic 30.0%
! TTTGTTATACCTTCTCTCTA+TGG - Chr7:42421317-42421336 MsG0780038230.01.T01:CDS 30.0%
!! TGCTATAGTTGATAGGAAAA+AGG + Chr7:42421227-42421246 None:intergenic 30.0%
!!! AAGTACTGGGATAATTTTGA+AGG - Chr7:42420787-42420806 MsG0780038230.01.T01:intron 30.0%
AAAACCTAGCTTAGAAGTCA+TGG - Chr7:42420889-42420908 MsG0780038230.01.T01:CDS 35.0%
AATCTTCACAAGTAGTGAAC+TGG + Chr7:42420683-42420702 None:intergenic 35.0%
ATTTCTACCCCAAAAAATGC+TGG - Chr7:42421145-42421164 MsG0780038230.01.T01:CDS 35.0%
CATAACATTGTCATGTGTAG+GGG + Chr7:42421350-42421369 None:intergenic 35.0%
CATACTAAATCACAAGGATG+AGG - Chr7:42419913-42419932 MsG0780038230.01.T01:CDS 35.0%
CTATGCAAAATGACCAAAAG+AGG - Chr7:42419618-42419637 MsG0780038230.01.T01:CDS 35.0%
CTTAGGAGAAATATCGAAAG+AGG - Chr7:42419869-42419888 MsG0780038230.01.T01:CDS 35.0%
CTTAGTTTATGTGCAAGTGT+GGG + Chr7:42420920-42420939 None:intergenic 35.0%
CTTCATCTTGCAAGTCAAAT+CGG - Chr7:42419710-42419729 MsG0780038230.01.T01:CDS 35.0%
GGTAGAAATTGTAGAATTGG+AGG + Chr7:42421134-42421153 None:intergenic 35.0%
TCTTAGTTTATGTGCAAGTG+TGG + Chr7:42420921-42420940 None:intergenic 35.0%
TGGATTCAAACTACCTATCA+TGG + Chr7:42420663-42420682 None:intergenic 35.0%
TGGGGTAGAAATTGTAGAAT+TGG + Chr7:42421137-42421156 None:intergenic 35.0%
TTCTCCTAAGAAAGCAAACA+AGG + Chr7:42419859-42419878 None:intergenic 35.0%
TTTACCTTCCAAGCAAATGA+AGG + Chr7:42419569-42419588 None:intergenic 35.0%
TTTCTACCCCAAAAAATGCT+GGG - Chr7:42421146-42421165 MsG0780038230.01.T01:CDS 35.0%
TTTGCATAGCGAGATGAATT+GGG + Chr7:42419607-42419626 None:intergenic 35.0%
! ATCTCCTTGTTTGCTTTCTT+AGG - Chr7:42419852-42419871 MsG0780038230.01.T01:CDS 35.0%
! TATACTCTTGTTCTCTAGAG+TGG + Chr7:42420852-42420871 None:intergenic 35.0%
! TTCGATTGTTGGTAAGTACT+GGG - Chr7:42420774-42420793 MsG0780038230.01.T01:intron 35.0%
! TTTCTTACGAGTTGAAGAAG+AGG - Chr7:42420011-42420030 MsG0780038230.01.T01:CDS 35.0%
! TTTTGCATAGCGAGATGAAT+TGG + Chr7:42419608-42419627 None:intergenic 35.0%
!! ATTTGACTTGCAAGATGAAG+AGG + Chr7:42419710-42419729 None:intergenic 35.0%
!! TGGACTAGTTAACTATGTAG+TGG - Chr7:42420305-42420324 MsG0780038230.01.T01:intron 35.0%
AACCTGATAAACTCCACCAA+CGG + Chr7:42421080-42421099 None:intergenic 40.0%
AATCCAAATCCAACAACTCG+TGG - Chr7:42420285-42420304 MsG0780038230.01.T01:intron 40.0%
AGATTTAGATTGCGCACAGT+CGG - Chr7:42420107-42420126 MsG0780038230.01.T01:intron 40.0%
ATACTAATTCTGACCCCAAG+AGG - Chr7:42421247-42421266 MsG0780038230.01.T01:CDS 40.0%
ATATTACACGAGGTTACCTG+TGG + Chr7:42419980-42419999 None:intergenic 40.0%
CAAAGGATAAACCAAACCAC+TGG + Chr7:42421301-42421320 None:intergenic 40.0%
CAGTTGTGACCTCAATACAA+AGG + Chr7:42420614-42420633 None:intergenic 40.0%
CCCAAAAAATGCTGGGAAAT+CGG - Chr7:42421153-42421172 MsG0780038230.01.T01:CDS 40.0%
CCTCAATACAAAGGACTTAG+AGG + Chr7:42420605-42420624 None:intergenic 40.0%
CCTCTAAGTCCTTTGTATTG+AGG - Chr7:42420602-42420621 MsG0780038230.01.T01:intron 40.0%
GAAACCTTCATTTGCTTGGA+AGG - Chr7:42419562-42419581 MsG0780038230.01.T01:CDS 40.0%
GCAAAATGACCAAAAGAGGA+TGG - Chr7:42419622-42419641 MsG0780038230.01.T01:CDS 40.0%
GCAAGAAAATGTGTGTGATG+CGG - Chr7:42420547-42420566 MsG0780038230.01.T01:intron 40.0%
GTCACATCTTGAATGGAATC+CGG + Chr7:42419773-42419792 None:intergenic 40.0%
GTTATACCTTCTCTCTATGG+AGG - Chr7:42421320-42421339 MsG0780038230.01.T01:CDS 40.0%
TACTAATTCTGACCCCAAGA+GGG - Chr7:42421248-42421267 MsG0780038230.01.T01:CDS 40.0%
TAGCGCAGAAATGTGCAAAA+TGG + Chr7:42419948-42419967 None:intergenic 40.0%
TCATAACCTCAATGGCAAAC+CGG + Chr7:42419538-42419557 None:intergenic 40.0%
TCCATTCAAGATGTGACTGT+GGG - Chr7:42419776-42419795 MsG0780038230.01.T01:CDS 40.0%
TGAAACTGCACTGCATATTG+CGG - Chr7:42419802-42419821 MsG0780038230.01.T01:CDS 40.0%
TTAACTAGTCCACGAGTTGT+TGG + Chr7:42420297-42420316 None:intergenic 40.0%
TTCCATTCAAGATGTGACTG+TGG - Chr7:42419775-42419794 MsG0780038230.01.T01:CDS 40.0%
TTGTATTGAGGTCACAACTG+CGG - Chr7:42420614-42420633 MsG0780038230.01.T01:intron 40.0%
TTGTGATTGCAATGTCGTTG+CGG - Chr7:42420576-42420595 MsG0780038230.01.T01:intron 40.0%
! AAAGACCTTGTTCGAGTTCA+AGG - Chr7:42419668-42419687 MsG0780038230.01.T01:CDS 40.0%
! AAGACCTTGTTCGAGTTCAA+GGG - Chr7:42419669-42419688 MsG0780038230.01.T01:CDS 40.0%
! CTTCGATTGTTGGTAAGTAC+TGG - Chr7:42420773-42420792 MsG0780038230.01.T01:intron 40.0%
!! GCTAGTCTTACGATTAAGAG+TGG + Chr7:42420225-42420244 None:intergenic 40.0%
!!! ACCGATTTCCCAGCATTTTT+TGG + Chr7:42421157-42421176 None:intergenic 40.0%
!!! CCGATTTCCCAGCATTTTTT+GGG + Chr7:42421156-42421175 None:intergenic 40.0%
!!! CGATTTCCCAGCATTTTTTG+GGG + Chr7:42421155-42421174 None:intergenic 40.0%
ACCTGATAAACTCCACCAAC+GGG + Chr7:42421079-42421098 None:intergenic 45.0%
AGTCCACGAGTTGTTGGATT+TGG + Chr7:42420291-42420310 None:intergenic 45.0%
ATTCAAGATGTGACTGTGGG+GGG - Chr7:42419779-42419798 MsG0780038230.01.T01:CDS 45.0%
CATTCAAGATGTGACTGTGG+GGG - Chr7:42419778-42419797 MsG0780038230.01.T01:CDS 45.0%
CCATTCAAGATGTGACTGTG+GGG - Chr7:42419777-42419796 MsG0780038230.01.T01:CDS 45.0%
CTTGACTTACTCTGTAGCAC+AGG - Chr7:42420748-42420767 MsG0780038230.01.T01:intron 45.0%
GATAAACCAAACCACTGGAC+CGG + Chr7:42421296-42421315 None:intergenic 45.0%
GCATCCATGACTTCTAAGCT+AGG + Chr7:42420896-42420915 None:intergenic 45.0%
GGTTATCCTCCATAGAGAGA+AGG + Chr7:42421329-42421348 None:intergenic 45.0%
TCTTGCAAGTCAAATCGGTG+AGG - Chr7:42419715-42419734 MsG0780038230.01.T01:CDS 45.0%
TGAATTGGGCTGAATCCTTG+CGG + Chr7:42419593-42419612 None:intergenic 45.0%
TTTGCATATCGCCGCATCTA+GGG - Chr7:42419505-42419524 MsG0780038230.01.T01:CDS 45.0%
! AGCGAGAAACCATCCTCTTT+TGG + Chr7:42419634-42419653 None:intergenic 45.0%
!! ACTCTTGTTCTCTAGAGTGG+CGG + Chr7:42420849-42420868 None:intergenic 45.0%
!! AGTCAGCGTTGATTGATAGG+TGG + Chr7:42421056-42421075 None:intergenic 45.0%
AATTCTGACCCCAAGAGGGA+GGG - Chr7:42421252-42421271 MsG0780038230.01.T01:CDS 50.0%
ACTGAAAGCTGCAGCTGAAG+CGG - Chr7:42419397-42419416 MsG0780038230.01.T01:CDS 50.0%
AGTCAGCACGAGCAAGATTG+AGG - Chr7:42420148-42420167 MsG0780038230.01.T01:intron 50.0%
CCCCACAGTCACATCTTGAA+TGG + Chr7:42419780-42419799 None:intergenic 50.0%
CTAGATGCGGCGATATGCAA+AGG + Chr7:42419506-42419525 None:intergenic 50.0%
CTCTCCCTTGAACTCGAACA+AGG + Chr7:42419676-42419695 None:intergenic 50.0%
CTTTGCATATCGCCGCATCT+AGG - Chr7:42419504-42419523 MsG0780038230.01.T01:CDS 50.0%
GCTTGGAAGGTAAATCCGCA+AGG - Chr7:42419575-42419594 MsG0780038230.01.T01:CDS 50.0%
TAATTCTGACCCCAAGAGGG+AGG - Chr7:42421251-42421270 MsG0780038230.01.T01:CDS 50.0%
TTGCATATCGCCGCATCTAG+GGG - Chr7:42419506-42419525 MsG0780038230.01.T01:CDS 50.0%
! GTTCGAGTTCAAGGGAGAGA+AGG - Chr7:42419677-42419696 MsG0780038230.01.T01:CDS 50.0%
! TCCCGTTGGTGGAGTTTATC+AGG - Chr7:42421075-42421094 MsG0780038230.01.T01:CDS 50.0%
!! GGGAGTCAGCGTTGATTGAT+AGG + Chr7:42421059-42421078 None:intergenic 50.0%
AGCACAGGCGCTTCGATTGT+TGG - Chr7:42420763-42420782 MsG0780038230.01.T01:intron 55.0%
CGGAGAAGCAACGCAACACT+TGG - Chr7:42421002-42421021 MsG0780038230.01.T01:CDS 55.0%
CTGAAAGCTGCAGCTGAAGC+GGG - Chr7:42419398-42419417 MsG0780038230.01.T01:CDS 55.0%
TGAGGTCACAACTGCGGTTG+CGG - Chr7:42420620-42420639 MsG0780038230.01.T01:intron 55.0%
TGCATATCGCCGCATCTAGG+GGG - Chr7:42419507-42419526 MsG0780038230.01.T01:CDS 55.0%
TGCGCTATGTAACGAGCCAC+AGG - Chr7:42419961-42419980 MsG0780038230.01.T01:CDS 55.0%
! GCATCTCCGGTTTGCCATTG+AGG - Chr7:42419529-42419548 MsG0780038230.01.T01:CDS 55.0%
!! CAATCAACGCTGACTCCCGT+TGG - Chr7:42421061-42421080 MsG0780038230.01.T01:CDS 55.0%
AGAGAGCCTACCCTCCCTCT+TGG + Chr7:42421265-42421284 None:intergenic 60.0%
AGAGCCTACCCTCCCTCTTG+GGG + Chr7:42421263-42421282 None:intergenic 60.0%
GAGAGCCTACCCTCCCTCTT+GGG + Chr7:42421264-42421283 None:intergenic 60.0%
GAGGGTAGGCTCTCTAGTCG+TGG - Chr7:42421270-42421289 MsG0780038230.01.T01:CDS 60.0%
GAGGTCACAACTGCGGTTGC+GGG - Chr7:42420621-42420640 MsG0780038230.01.T01:intron 60.0%
GTAGGCTCTCTAGTCGTGGC+CGG - Chr7:42421274-42421293 MsG0780038230.01.T01:CDS 60.0%
!! TCAACGCTGACTCCCGTTGG+TGG - Chr7:42421064-42421083 MsG0780038230.01.T01:CDS 60.0%
CCGGAGATGCCCCCTAGATG+CGG + Chr7:42419519-42419538 None:intergenic 65.0%
CTGACCCCAAGAGGGAGGGT+AGG - Chr7:42421256-42421275 MsG0780038230.01.T01:CDS 65.0%
TCGTGGCCGGTCCAGTGGTT+TGG - Chr7:42421287-42421306 MsG0780038230.01.T01:CDS 65.0%
TCTAGTCGTGGCCGGTCCAG+TGG - Chr7:42421282-42421301 MsG0780038230.01.T01:CDS 65.0%
!! CCGCATCTAGGGGGCATCTC+CGG - Chr7:42419516-42419535 MsG0780038230.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 42419374 42421462 42419374 ID=MsG0780038230.01;Name=MsG0780038230.01
Chr7 mRNA 42419374 42421462 42419374 ID=MsG0780038230.01.T01;Parent=MsG0780038230.01;Name=MsG0780038230.01.T01;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|433
Chr7 exon 42420854 42421462 42420854 ID=MsG0780038230.01.T01:exon:7591;Parent=MsG0780038230.01.T01
Chr7 exon 42419374 42420066 42419374 ID=MsG0780038230.01.T01:exon:7590;Parent=MsG0780038230.01.T01
Chr7 CDS 42420854 42421462 42420854 ID=MsG0780038230.01.T01:cds;Parent=MsG0780038230.01.T01
Chr7 CDS 42419374 42420066 42419374 ID=MsG0780038230.01.T01:cds;Parent=MsG0780038230.01.T01
Gene Sequence

>MsG0780038230.01.T01

ATGAGCACAACCAATCTTGATAAACTGAAAGCTGCAGCTGAAGCGGGTAATATAGACATCCTTTATGCAGTAATTCAAATTGATTCGTCCATTCTAGAGATTATAGATTCGAATCAGTTTGTTGAAACTCCTTTGCATATCGCCGCATCTAGGGGGCATCTCCGGTTTGCCATTGAGGTTATGAATTTGAAACCTTCATTTGCTTGGAAGGTAAATCCGCAAGGATTCAGCCCAATTCATCTCGCTATGCAAAATGACCAAAAGAGGATGGTTTCTCGCTTTGTTGACATTAATAAAGACCTTGTTCGAGTTCAAGGGAGAGAAGGCTTAACGCCTCTTCATCTTGCAAGTCAAATCGGTGAGGTTGAACTTTTAGCTAAATTACTTTTTGCATGTCCGGATTCCATTCAAGATGTGACTGTGGGGGGTGAAACTGCACTGCATATTGCGGTGAAAAATAAAAACTTTGAGGCTCTTCATCTCCTTGTTTGCTTTCTTAGGAGAAATATCGAAAGAGGTGCTAGAGAGTTTGAATATAACATACTAAATCACAAGGATGAGGATGACAACACCATTTTGCACATTTCTGCGCTATGTAACGAGCCACAGGCGCTTCGATTGTTGGTAAGTACTGGGATAATTTTGAAGGCAAAGAATTTGGAGAACAAAACAGCATTAGACATAGCCGCCACTCTAGAGAACAAGAGTATATTATTTAGTGCTGGATCAAAACCTAGCTTAGAAGTCATGGATGCTCCCACACTTGCACATAAACTAAGATCAAAGACGACTATTATGGATAAAATGTTGATTTATGTATGTCGCATTGAAAGAAATATATCGGAGAAGCAACGCAACACTTGGTTGATAATTGCGACTCTTGTTGCAACAGCCACCTATCAATCAACGCTGACTCCCGTTGGTGGAGTTTATCAGGTTAGTGCTAGTGACAATAATGTGAACAACACTTCCTCCAATTCTACAATTTCTACCCCAAAAAATGCTGGGAAATCGGTCTTGTCAAAAGTTGATTTCTTTTTGTTTTCATATATGAATATGATTTCCTTTTTCCTATCAACTATAGCAATACTAATTCTGACCCCAAGAGGGAGGGTAGGCTCTCTAGTCGTGGCCGGTCCAGTGGTTTGGTTTATCCTTTGTTATACCTTCTCTCTATGGAGGATAACCCCTACACATGACAATGTTATGATGTTTAATTTAATTTTCTTTTTTAGTATTGTTGCAACAGGGATTTGCTGCATTATTTTAGTGTACTATAGATTTTTGGCTTCTGCACAATAG
Protein sequence

>MsG0780038230.01.T01

MSTTNLDKLKAAAEAGNIDILYAVIQIDSSILEIIDSNQFVETPLHIAASRGHLRFAIEVMNLKPSFAWKVNPQGFSPIHLAMQNDQKRMVSRFVDINKDLVRVQGREGLTPLHLASQIGEVELLAKLLFACPDSIQDVTVGGETALHIAVKNKNFEALHLLVCFLRRNIERGAREFEYNILNHKDEDDNTILHISALCNEPQALRLLVSTGIILKAKNLENKTALDIAATLENKSILFSAGSKPSLEVMDAPTLAHKLRSKTTIMDKMLIYVCRIERNISEKQRNTWLIIATLVATATYQSTLTPVGGVYQVSASDNNVNNTSSNSTISTPKNAGKSVLSKVDFFLFSYMNMISFFLSTIAILILTPRGRVGSLVVAGPVVWFILCYTFSLWRITPTHDNVMMFNLIFFFSIVATGICCIILVYYRFLASAQ*