Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043688.01.T01 | XP_024639533.1 | 73.913 | 253 | 65 | 1 | 1 | 252 | 12 | 264 | 1.14E-128 | 382 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043688.01.T01 | Q8GYH5 | 40.081 | 247 | 136 | 4 | 4 | 241 | 8 | 251 | 1.50E-58 | 194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043688.01.T01 | A0A396JMN2 | 73.913 | 253 | 65 | 1 | 1 | 252 | 12 | 264 | 5.47e-129 | 382 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000029.01 | MsG0880043688.01 | 0.801299 | 9.616071e-49 | 4.576228e-46 |
| MsG0180001029.01 | MsG0880043688.01 | 0.811134 | 8.149081e-51 | 5.004091e-48 |
| MsG0180003320.01 | MsG0880043688.01 | 0.843638 | 1.238684e-58 | 1.950495e-55 |
| MsG0180006195.01 | MsG0880043688.01 | 0.801122 | 1.044978e-48 | 4.951004e-46 |
| MsG0780040716.01 | MsG0880043688.01 | 0.830417 | 2.970857e-55 | 3.128085e-52 |
| MsG0780041500.01 | MsG0880043688.01 | 0.813740 | 2.196690e-51 | 1.446327e-48 |
| MsG0880043688.01 | MsG0880044712.01 | 0.820748 | 5.823317e-53 | 4.647401e-50 |
| MsG0880043688.01 | MsG0880045801.01 | 0.814485 | 1.504049e-51 | 1.010519e-48 |
| MsG0880043688.01 | MsG0880046829.01 | 0.801580 | 8.421124e-49 | 4.035939e-46 |
| MsG0880043688.01 | MsG0880046870.01 | 0.823285 | 1.503720e-53 | 1.289143e-50 |
| MsG0380012222.01 | MsG0880043688.01 | 0.810262 | 1.258093e-50 | 7.548461e-48 |
| MsG0680031200.01 | MsG0880043688.01 | 0.801605 | 8.322173e-49 | 3.990947e-46 |
| MsG0680032045.01 | MsG0880043688.01 | 0.803858 | 2.852145e-49 | 1.448862e-46 |
| MsG0680032932.01 | MsG0880043688.01 | 0.811668 | 6.238470e-51 | 3.884929e-48 |
| MsG0680034238.01 | MsG0880043688.01 | 0.807223 | 5.614686e-50 | 3.109868e-47 |
| MsG0480019817.01 | MsG0880043688.01 | 0.802569 | 5.272148e-49 | 2.591116e-46 |
| MsG0480021091.01 | MsG0880043688.01 | 0.808701 | 2.721876e-50 | 1.566952e-47 |
| MsG0480021227.01 | MsG0880043688.01 | 0.807839 | 4.154552e-50 | 2.338278e-47 |
| MsG0480021230.01 | MsG0880043688.01 | 0.816957 | 4.230182e-52 | 3.040614e-49 |
| MsG0380016490.01 | MsG0880043688.01 | 0.800998 | 1.107896e-48 | 5.232905e-46 |
| MsG0380017901.01 | MsG0880043688.01 | 0.829309 | 5.531169e-55 | 5.640723e-52 |
| MsG0580026521.01 | MsG0880043688.01 | 0.817247 | 3.641082e-52 | 2.637717e-49 |
| MsG0780035930.01 | MsG0880043688.01 | 0.807009 | 6.232522e-50 | 3.432875e-47 |
| MsG0780038657.01 | MsG0880043688.01 | 0.806271 | 8.921847e-50 | 4.822175e-47 |
| MsG0780039373.01 | MsG0880043688.01 | 0.818584 | 1.816041e-52 | 1.364827e-49 |
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043688.01.T01 | MTR_1g059930 | 74.206 | 252 | 64 | 1 | 1 | 251 | 12 | 263 | 1.74e-132 | 381 |
| MsG0880043688.01.T01 | MTR_3g016210 | 69.057 | 265 | 70 | 1 | 1 | 253 | 10 | 274 | 3.49e-129 | 373 |
| MsG0880043688.01.T01 | MTR_8g039620 | 73.810 | 252 | 65 | 1 | 1 | 251 | 14 | 265 | 1.06e-125 | 364 |
| MsG0880043688.01.T01 | MTR_7g021090 | 69.048 | 252 | 77 | 1 | 1 | 251 | 9 | 260 | 5.69e-120 | 348 |
| MsG0880043688.01.T01 | MTR_8g072510 | 69.565 | 253 | 76 | 1 | 1 | 252 | 10 | 262 | 6.37e-120 | 350 |
| MsG0880043688.01.T01 | MTR_8g062410 | 69.200 | 250 | 75 | 1 | 1 | 248 | 10 | 259 | 4.44e-117 | 343 |
| MsG0880043688.01.T01 | MTR_7g451420 | 68.254 | 252 | 79 | 1 | 1 | 251 | 9 | 260 | 8.29e-115 | 332 |
| MsG0880043688.01.T01 | MTR_8g073260 | 65.748 | 254 | 86 | 1 | 1 | 253 | 11 | 264 | 9.64e-115 | 337 |
| MsG0880043688.01.T01 | MTR_8g068990 | 65.882 | 255 | 70 | 3 | 1 | 251 | 12 | 253 | 3.47e-111 | 328 |
| MsG0880043688.01.T01 | MTR_8g069880 | 66.667 | 252 | 81 | 2 | 1 | 250 | 7 | 257 | 1.01e-109 | 324 |
| MsG0880043688.01.T01 | MTR_8g040930 | 69.159 | 214 | 62 | 2 | 43 | 252 | 1 | 214 | 3.09e-99 | 295 |
| MsG0880043688.01.T01 | MTR_8g041240 | 69.159 | 214 | 62 | 2 | 43 | 252 | 1 | 214 | 3.09e-99 | 295 |
| MsG0880043688.01.T01 | MTR_8g467780 | 56.439 | 264 | 104 | 2 | 1 | 253 | 11 | 274 | 4.19e-94 | 284 |
| MsG0880043688.01.T01 | MTR_8g066670 | 61.508 | 252 | 95 | 1 | 1 | 250 | 1075 | 1326 | 7.51e-92 | 296 |
| MsG0880043688.01.T01 | MTR_3g105650 | 55.512 | 254 | 105 | 2 | 1 | 246 | 5 | 258 | 3.17e-90 | 273 |
| MsG0880043688.01.T01 | MTR_8g073275 | 46.520 | 273 | 74 | 4 | 43 | 251 | 1 | 265 | 2.69e-64 | 207 |
| MsG0880043688.01.T01 | MTR_7g099580 | 27.374 | 179 | 119 | 2 | 13 | 187 | 24 | 195 | 1.75e-20 | 89.4 |
| MsG0880043688.01.T01 | MTR_7g099570 | 30.366 | 191 | 119 | 3 | 4 | 189 | 12 | 193 | 3.46e-20 | 89.7 |
| MsG0880043688.01.T01 | MTR_2g101320 | 27.426 | 237 | 144 | 4 | 32 | 250 | 137 | 363 | 3.55e-18 | 84.0 |
| MsG0880043688.01.T01 | MTR_1g069110 | 28.144 | 167 | 115 | 2 | 4 | 167 | 21 | 185 | 6.06e-17 | 80.1 |
| MsG0880043688.01.T01 | MTR_1g115575 | 28.400 | 250 | 139 | 7 | 3 | 234 | 137 | 364 | 8.49e-17 | 80.1 |
| MsG0880043688.01.T01 | MTR_7g117620 | 28.507 | 221 | 141 | 3 | 36 | 251 | 119 | 327 | 7.31e-16 | 77.0 |
| MsG0880043688.01.T01 | MTR_2g101310 | 26.050 | 238 | 147 | 4 | 32 | 250 | 137 | 364 | 3.18e-14 | 72.4 |
| MsG0880043688.01.T01 | MTR_2g101310 | 26.050 | 238 | 147 | 4 | 32 | 250 | 137 | 364 | 3.29e-14 | 72.0 |
| MsG0880043688.01.T01 | MTR_5g085500 | 29.299 | 157 | 98 | 3 | 70 | 221 | 8 | 156 | 1.38e-13 | 70.1 |
| MsG0880043688.01.T01 | MTR_4g062100 | 26.389 | 216 | 142 | 3 | 37 | 247 | 109 | 312 | 3.11e-13 | 69.3 |
| MsG0880043688.01.T01 | MTR_1g032100 | 28.099 | 242 | 150 | 7 | 4 | 235 | 63 | 290 | 8.04e-13 | 68.2 |
| MsG0880043688.01.T01 | MTR_5g085810 | 27.778 | 198 | 123 | 5 | 52 | 235 | 320 | 511 | 9.36e-12 | 65.1 |
| MsG0880043688.01.T01 | MTR_8g105260 | 26.761 | 213 | 135 | 4 | 37 | 240 | 102 | 302 | 1.62e-11 | 64.3 |
| MsG0880043688.01.T01 | MTR_7g100390 | 23.629 | 237 | 163 | 4 | 4 | 235 | 56 | 279 | 4.26e-11 | 62.8 |
| MsG0880043688.01.T01 | MTR_2g096190 | 25.316 | 158 | 116 | 1 | 4 | 161 | 108 | 263 | 6.42e-11 | 62.4 |
| MsG0880043688.01.T01 | MTR_2g096190 | 24.324 | 222 | 149 | 4 | 37 | 251 | 105 | 314 | 8.32e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043688.01.T01 | AT4G10720 | 40.698 | 258 | 142 | 3 | 4 | 251 | 8 | 264 | 1.43e-61 | 199 |
| MsG0880043688.01.T01 | AT4G10720 | 40.541 | 259 | 143 | 3 | 4 | 252 | 8 | 265 | 4.02e-61 | 199 |
| MsG0880043688.01.T01 | AT5G54620 | 42.188 | 256 | 140 | 2 | 4 | 251 | 8 | 263 | 6.15e-60 | 196 |
| MsG0880043688.01.T01 | AT5G54610 | 40.081 | 247 | 136 | 4 | 4 | 241 | 8 | 251 | 1.52e-59 | 194 |
| MsG0880043688.01.T01 | AT5G15500 | 42.041 | 245 | 131 | 4 | 1 | 235 | 6 | 249 | 2.70e-58 | 192 |
| MsG0880043688.01.T01 | AT1G14480 | 41.071 | 224 | 130 | 1 | 1 | 222 | 5 | 228 | 1.53e-52 | 176 |
| MsG0880043688.01.T01 | AT1G14500 | 39.592 | 245 | 142 | 2 | 1 | 239 | 5 | 249 | 2.15e-52 | 176 |
| MsG0880043688.01.T01 | AT1G14480 | 46.753 | 154 | 82 | 0 | 1 | 154 | 5 | 158 | 1.79e-41 | 146 |
| MsG0880043688.01.T01 | AT5G51160 | 30.088 | 226 | 135 | 5 | 33 | 243 | 13 | 230 | 4.63e-23 | 97.8 |
| MsG0880043688.01.T01 | AT5G15500 | 36.111 | 144 | 81 | 4 | 102 | 235 | 1 | 143 | 2.08e-18 | 83.6 |
| MsG0880043688.01.T01 | AT3G09550 | 28.455 | 246 | 144 | 7 | 3 | 234 | 149 | 376 | 9.50e-17 | 79.7 |
| MsG0880043688.01.T01 | AT3G09550 | 28.455 | 246 | 144 | 7 | 3 | 234 | 149 | 376 | 9.50e-17 | 79.7 |
| MsG0880043688.01.T01 | AT3G09550 | 28.455 | 246 | 144 | 7 | 3 | 234 | 156 | 383 | 1.13e-16 | 79.7 |
| MsG0880043688.01.T01 | AT2G01680 | 28.436 | 211 | 130 | 4 | 36 | 237 | 97 | 295 | 3.87e-16 | 77.8 |
| MsG0880043688.01.T01 | AT4G03500 | 24.893 | 233 | 126 | 6 | 28 | 220 | 205 | 428 | 5.37e-13 | 68.9 |
| MsG0880043688.01.T01 | AT5G50140 | 28.324 | 173 | 99 | 4 | 32 | 189 | 26 | 188 | 5.50e-13 | 68.6 |
| MsG0880043688.01.T01 | AT4G03500 | 24.893 | 233 | 126 | 6 | 28 | 220 | 182 | 405 | 5.56e-13 | 68.6 |
| MsG0880043688.01.T01 | AT4G03500 | 24.893 | 233 | 126 | 6 | 28 | 220 | 182 | 405 | 5.56e-13 | 68.6 |
| MsG0880043688.01.T01 | AT2G31820 | 28.293 | 205 | 128 | 5 | 36 | 234 | 227 | 418 | 1.20e-12 | 67.8 |
| MsG0880043688.01.T01 | AT1G05640 | 28.780 | 205 | 127 | 5 | 36 | 234 | 191 | 382 | 2.03e-12 | 67.0 |
| MsG0880043688.01.T01 | AT5G60070 | 24.123 | 228 | 158 | 4 | 4 | 230 | 115 | 328 | 2.40e-12 | 66.6 |
| MsG0880043688.01.T01 | AT1G07710 | 27.234 | 235 | 153 | 4 | 4 | 233 | 73 | 294 | 2.53e-12 | 66.6 |
| MsG0880043688.01.T01 | AT1G07710 | 27.234 | 235 | 153 | 4 | 4 | 233 | 73 | 294 | 2.53e-12 | 66.6 |
| MsG0880043688.01.T01 | AT3G12360 | 24.407 | 295 | 146 | 7 | 4 | 234 | 81 | 362 | 2.72e-12 | 66.6 |
| MsG0880043688.01.T01 | AT3G12360 | 24.407 | 295 | 146 | 7 | 4 | 234 | 69 | 350 | 2.88e-12 | 66.6 |
| MsG0880043688.01.T01 | AT4G03460 | 31.618 | 136 | 82 | 3 | 89 | 220 | 285 | 413 | 6.43e-12 | 65.5 |
| MsG0880043688.01.T01 | AT4G03460 | 31.618 | 136 | 82 | 3 | 89 | 220 | 253 | 381 | 6.98e-12 | 65.5 |
| MsG0880043688.01.T01 | AT1G10340 | 29.054 | 148 | 97 | 1 | 71 | 218 | 171 | 310 | 1.10e-11 | 64.7 |
| MsG0880043688.01.T01 | AT1G10340 | 29.054 | 148 | 97 | 1 | 71 | 218 | 175 | 314 | 1.14e-11 | 64.7 |
Find 54 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGAGATGATCCATCCATTT+TGG | 0.164146 | 8:-29191164 | MsG0880043688.01.T01:CDS |
| AAAGAACTTGTTAGAGTTAA+AGG | 0.170968 | 8:-29190944 | MsG0880043688.01.T01:CDS |
| TTTACATATTGCTGCATCTA+TGG | 0.203638 | 8:-29191107 | MsG0880043688.01.T01:CDS |
| TCATAATTTCAGTGGCAAAT+TGG | 0.275256 | 8:+29191077 | None:intergenic |
| CATATGCTTGGAAGCTAAAC+TGG | 0.300020 | 8:-29191042 | MsG0880043688.01.T01:CDS |
| CGATTCTATACGATCCAAAA+TGG | 0.303787 | 8:+29191150 | None:intergenic |
| TCCACCTTGCTTTGCAGAAC+GGG | 0.338963 | 8:-29191003 | MsG0880043688.01.T01:CDS |
| TTACCTGTGGATTACAGCTT+AGG | 0.352866 | 8:+29190648 | None:intergenic |
| GAGGCCCTTCAAGTACTTGT+TGG | 0.387506 | 8:-29190770 | MsG0880043688.01.T01:CDS |
| ATTTAAAATTCTAAATCAAA+TGG | 0.401531 | 8:-29190705 | MsG0880043688.01.T01:CDS |
| GCAGAACGGGCAAAAGAGTA+TGG | 0.403806 | 8:-29190990 | MsG0880043688.01.T01:CDS |
| CCCTTCAAGTACTTGTTGGC+TGG | 0.409768 | 8:-29190766 | MsG0880043688.01.T01:CDS |
| GTCAGGTATTGAATGGATTC+CGG | 0.418131 | 8:+29190842 | None:intergenic |
| TTCTGCAAAGCAAGGTGGAT+GGG | 0.420515 | 8:+29191007 | None:intergenic |
| TGAAAACTGCAGCTCAAGCC+GGG | 0.438644 | 8:-29191213 | MsG0880043688.01.T01:CDS |
| TGTAAAGGAGTTTCAACAAA+TGG | 0.444663 | 8:+29191124 | None:intergenic |
| TCCAGAGCTGGAGCAAAACT+TGG | 0.449399 | 8:-29189903 | MsG0880043688.01.T01:CDS |
| AAATTTGAAGGCAAAGAACT+TGG | 0.453646 | 8:-29189979 | MsG0880043688.01.T01:CDS |
| TGTTAAGAATGAACAGTTTG+AGG | 0.453646 | 8:-29190789 | MsG0880043688.01.T01:CDS |
| CAGTCTCGCACCTCACAGTC+AGG | 0.477088 | 8:+29190825 | None:intergenic |
| CTTGTTTGTTGGTAATGACT+AGG | 0.482124 | 8:-29190004 | MsG0880043688.01.T01:CDS |
| GTTAGAGTTAAAGGAAGAGA+AGG | 0.482284 | 8:-29190935 | MsG0880043688.01.T01:CDS |
| TGTTGAAACCTTCATATGCT+TGG | 0.485488 | 8:-29191054 | MsG0880043688.01.T01:CDS |
| TAACTTTCTCTATGCTTGTC+CGG | 0.488983 | 8:-29190861 | MsG0880043688.01.T01:CDS |
| TACCTGTGGATTACAGCTTA+GGG | 0.490926 | 8:+29190649 | None:intergenic |
| TTTAGCTTCCAAGCATATGA+AGG | 0.493105 | 8:+29191046 | None:intergenic |
| TTACATATTGCTGCATCTAT+GGG | 0.495030 | 8:-29191106 | MsG0880043688.01.T01:CDS |
| CCTCACAGTCAGGTATTGAA+TGG | 0.499244 | 8:+29190835 | None:intergenic |
| ATGAAAACTGCAGCTCAAGC+CGG | 0.501760 | 8:-29191214 | MsG0880043688.01.T01:CDS |
| GCCAGCCAACAAGTACTTGA+AGG | 0.506296 | 8:+29190765 | None:intergenic |
| GGTGGAACAGGCTTGTTTGT+TGG | 0.508243 | 8:-29190015 | MsG0880043688.01.T01:intron |
| GTTCTGCAAAGCAAGGTGGA+TGG | 0.528821 | 8:+29191006 | None:intergenic |
| AAGAAAATATTATCCAGAGC+TGG | 0.537892 | 8:-29189915 | MsG0880043688.01.T01:CDS |
| ATCCACCTTGCTTTGCAGAA+CGG | 0.538687 | 8:-29191004 | MsG0880043688.01.T01:CDS |
| ATTTGACTTGCAAAATGAAG+AGG | 0.542519 | 8:+29190905 | None:intergenic |
| CTAAATCAAATGGATGAGGC+AGG | 0.546030 | 8:-29190695 | MsG0880043688.01.T01:CDS |
| TTTGCCCGTTCTGCAAAGCA+AGG | 0.551648 | 8:+29190999 | None:intergenic |
| TTTCAACATCATAATTTCAG+TGG | 0.552567 | 8:+29191069 | None:intergenic |
| ATAGATGCAGCAATATGTAA+AGG | 0.555251 | 8:+29191109 | None:intergenic |
| TCTTAGTTTATGTGCGTGTG+TGG | 0.558188 | 8:+29189860 | None:intergenic |
| TCTGCAAAGCAAGGTGGATG+GGG | 0.566411 | 8:+29191008 | None:intergenic |
| TCTATACGATCCAAAATGGA+TGG | 0.568541 | 8:+29191154 | None:intergenic |
| CTTAGTTTATGTGCGTGTGT+GGG | 0.574156 | 8:+29189861 | None:intergenic |
| AATTCTAAATCAAATGGATG+AGG | 0.583293 | 8:-29190699 | MsG0880043688.01.T01:CDS |
| AGCCCTAAGCTGTAATCCAC+AGG | 0.588957 | 8:-29190651 | MsG0880043688.01.T01:intron |
| GCTTGGAAGCTAAACTGGCA+AGG | 0.616049 | 8:-29191037 | MsG0880043688.01.T01:CDS |
| CCAGCCAACAAGTACTTGAA+GGG | 0.622327 | 8:+29190766 | None:intergenic |
| ATAGAGAAGATCTATATCCC+CGG | 0.622925 | 8:+29191195 | None:intergenic |
| GAAAACTGCAGCTCAAGCCG+GGG | 0.641726 | 8:-29191212 | MsG0880043688.01.T01:CDS |
| CTCGAAGCAAATTACAAGAG+AGG | 0.641881 | 8:-29190743 | MsG0880043688.01.T01:CDS |
| GCCCGTTCTGCAAAGCAAGG+TGG | 0.649880 | 8:+29191002 | None:intergenic |
| CCATTCAATACCTGACTGTG+AGG | 0.663432 | 8:-29190835 | MsG0880043688.01.T01:CDS |
| AGACATTGCATCAACTGCAG+AGG | 0.663602 | 8:-29189940 | MsG0880043688.01.T01:CDS |
| AGTTGATGCAATGTCTAATG+CGG | 0.716809 | 8:+29189947 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTATTTTTATTTATTAT+TGG | - | Chr8:29190803-29190822 | MsG0880043688.01.T01:CDS | 0.0% |
| !!! | AATTATTTTTATTTATTATT+GGG | - | Chr8:29190804-29190823 | MsG0880043688.01.T01:CDS | 0.0% |
| !!! | ATTTAAAATTCTAAATCAAA+TGG | - | Chr8:29190351-29190370 | MsG0880043688.01.T01:intron | 10.0% |
| !! | TGATAAGAAAAATATAAAGT+AGG | - | Chr8:29190541-29190560 | MsG0880043688.01.T01:intron | 15.0% |
| !!! | TATTTCTTGTTATTTTTTTG+TGG | - | Chr8:29190492-29190511 | MsG0880043688.01.T01:intron | 15.0% |
| !! | AAAATATAAAGTAGGTAGTT+TGG | - | Chr8:29190549-29190568 | MsG0880043688.01.T01:intron | 20.0% |
| !! | CAAAATATATAAACATGATG+AGG | + | Chr8:29190457-29190476 | None:intergenic | 20.0% |
| !!! | ATGAAGATCAATGTTTTTTT+GGG | - | Chr8:29190700-29190719 | MsG0880043688.01.T01:CDS | 20.0% |
| !!! | ATTGTTCATTGATAATTACT+TGG | - | Chr8:29191020-29191039 | MsG0880043688.01.T01:CDS | 20.0% |
| !!! | TAATTTTACTCTCAAATTCA+AGG | + | Chr8:29190870-29190889 | None:intergenic | 20.0% |
| ! | AATGACTAGGAAAAATTTGA+AGG | - | Chr8:29191065-29191084 | MsG0880043688.01.T01:CDS | 25.0% |
| ! | AATTCTAAATCAAATGGATG+AGG | - | Chr8:29190357-29190376 | MsG0880043688.01.T01:intron | 25.0% |
| ! | GAAAAACATTCCAAAATAAG+TGG | + | Chr8:29190931-29190950 | None:intergenic | 25.0% |
| ! | TTATTATTGGGTGTTAATCA+TGG | - | Chr8:29190816-29190835 | MsG0880043688.01.T01:CDS | 25.0% |
| ! | TTTCAACATCATAATTTCAG+TGG | + | Chr8:29189990-29190009 | None:intergenic | 25.0% |
| !! | TTTTACTCGCAAATTTCATA+TGG | - | Chr8:29190596-29190615 | MsG0880043688.01.T01:intron | 25.0% |
| !!! | AAAGAACTTGTTAGAGTTAA+AGG | - | Chr8:29190112-29190131 | MsG0880043688.01.T01:intron | 25.0% |
| !!! | GATGAAGATCAATGTTTTTT+TGG | - | Chr8:29190699-29190718 | MsG0880043688.01.T01:CDS | 25.0% |
| !!! | GTGGTGTAATTTTTTTTCAT+TGG | - | Chr8:29190511-29190530 | MsG0880043688.01.T01:intron | 25.0% |
| AAATTTGAAGGCAAAGAACT+TGG | - | Chr8:29191077-29191096 | MsG0880043688.01.T01:CDS | 30.0% | |
| AAGAAAATATTATCCAGAGC+TGG | - | Chr8:29191141-29191160 | MsG0880043688.01.T01:CDS | 30.0% | |
| ACATTGATCTTCATCTGTAT+AGG | + | Chr8:29190694-29190713 | None:intergenic | 30.0% | |
| ATAGATGCAGCAATATGTAA+AGG | + | Chr8:29189950-29189969 | None:intergenic | 30.0% | |
| TCATAATTTCAGTGGCAAAT+TGG | + | Chr8:29189982-29190001 | None:intergenic | 30.0% | |
| TGTAAAGGAGTTTCAACAAA+TGG | + | Chr8:29189935-29189954 | None:intergenic | 30.0% | |
| TGTTAAGAATGAACAGTTTG+AGG | - | Chr8:29190267-29190286 | MsG0880043688.01.T01:intron | 30.0% | |
| TTACATATTGCTGCATCTAT+GGG | - | Chr8:29189950-29189969 | MsG0880043688.01.T01:CDS | 30.0% | |
| TTTACATATTGCTGCATCTA+TGG | - | Chr8:29189949-29189968 | MsG0880043688.01.T01:CDS | 30.0% | |
| ! | CTTCATTTTGCAAGTCAAAT+TGG | - | Chr8:29190154-29190173 | MsG0880043688.01.T01:intron | 30.0% |
| ! | GTTCATTGATAATTACTTGG+TGG | - | Chr8:29191023-29191042 | MsG0880043688.01.T01:CDS | 30.0% |
| !! | ATATAAAGCGCCACTTATTT+TGG | - | Chr8:29190918-29190937 | MsG0880043688.01.T01:CDS | 30.0% |
| !! | ATTTGACTTGCAAAATGAAG+AGG | + | Chr8:29190154-29190173 | None:intergenic | 30.0% |
| !! | GCTAATTCTTTGCTTTAAAG+TGG | + | Chr8:29190629-29190648 | None:intergenic | 30.0% |
| ATAGAGAAGATCTATATCCC+CGG | + | Chr8:29189864-29189883 | None:intergenic | 35.0% | |
| ATGAGGTTTCATATCATTGC+AGG | + | Chr8:29190440-29190459 | None:intergenic | 35.0% | |
| CGATTCTATACGATCCAAAA+TGG | + | Chr8:29189909-29189928 | None:intergenic | 35.0% | |
| GTTAGAGTTAAAGGAAGAGA+AGG | - | Chr8:29190121-29190140 | MsG0880043688.01.T01:intron | 35.0% | |
| TAACTTTCTCTATGCTTGTC+CGG | - | Chr8:29190195-29190214 | MsG0880043688.01.T01:intron | 35.0% | |
| TCTATACGATCCAAAATGGA+TGG | + | Chr8:29189905-29189924 | None:intergenic | 35.0% | |
| TGTTGAAACCTTCATATGCT+TGG | - | Chr8:29190002-29190021 | MsG0880043688.01.T01:CDS | 35.0% | |
| TTACAAATGTGACAGTGAGA+TGG | - | Chr8:29190953-29190972 | MsG0880043688.01.T01:CDS | 35.0% | |
| ! | AGTTGATGCAATGTCTAATG+CGG | + | Chr8:29191112-29191131 | None:intergenic | 35.0% |
| ! | TGATAATTACTTGGTGGAAC+AGG | - | Chr8:29191029-29191048 | MsG0880043688.01.T01:CDS | 35.0% |
| ! | TTTAGCTTCCAAGCATATGA+AGG | + | Chr8:29190013-29190032 | None:intergenic | 35.0% |
| ! | TTTTGCAAGTCAAATTGGTG+AGG | - | Chr8:29190159-29190178 | MsG0880043688.01.T01:intron | 35.0% |
| !! | CTTGTTTGTTGGTAATGACT+AGG | - | Chr8:29191052-29191071 | MsG0880043688.01.T01:CDS | 35.0% |
| CATATGCTTGGAAGCTAAAC+TGG | - | Chr8:29190014-29190033 | MsG0880043688.01.T01:intron | 40.0% | |
| CTAAATCAAATGGATGAGGC+AGG | - | Chr8:29190361-29190380 | MsG0880043688.01.T01:intron | 40.0% | |
| CTCGAAGCAAATTACAAGAG+AGG | - | Chr8:29190313-29190332 | MsG0880043688.01.T01:intron | 40.0% | |
| CTTAGTTTATGTGCGTGTGT+GGG | + | Chr8:29191198-29191217 | None:intergenic | 40.0% | |
| TCTTAGTTTATGTGCGTGTG+TGG | + | Chr8:29191199-29191218 | None:intergenic | 40.0% | |
| TTGCAGGAGTTAATTACCTG+TGG | + | Chr8:29190424-29190443 | None:intergenic | 40.0% | |
| ! | AGTATGGTGTCTCGTTTTGT+GGG | - | Chr8:29190082-29190101 | MsG0880043688.01.T01:intron | 40.0% |
| ! | TACCTGTGGATTACAGCTTA+GGG | + | Chr8:29190410-29190429 | None:intergenic | 40.0% |
| ! | TCGAGATGATCCATCCATTT+TGG | - | Chr8:29189892-29189911 | MsG0880043688.01.T01:CDS | 40.0% |
| ! | TTACCTGTGGATTACAGCTT+AGG | + | Chr8:29190411-29190430 | None:intergenic | 40.0% |
| !! | GTCAGGTATTGAATGGATTC+CGG | + | Chr8:29190217-29190236 | None:intergenic | 40.0% |
| AGACATTGCATCAACTGCAG+AGG | - | Chr8:29191116-29191135 | MsG0880043688.01.T01:CDS | 45.0% | |
| ATCCACCTTGCTTTGCAGAA+CGG | - | Chr8:29190052-29190071 | MsG0880043688.01.T01:intron | 45.0% | |
| ATGAAAACTGCAGCTCAAGC+CGG | - | Chr8:29189842-29189861 | MsG0880043688.01.T01:CDS | 45.0% | |
| CCAGCCAACAAGTACTTGAA+GGG | + | Chr8:29190293-29190312 | None:intergenic | 45.0% | |
| CCATTCAATACCTGACTGTG+AGG | - | Chr8:29190221-29190240 | MsG0880043688.01.T01:intron | 45.0% | |
| TTCTGCAAAGCAAGGTGGAT+GGG | + | Chr8:29190052-29190071 | None:intergenic | 45.0% | |
| ! | GAGTATGGTGTCTCGTTTTG+TGG | - | Chr8:29190081-29190100 | MsG0880043688.01.T01:intron | 45.0% |
| !! | CCTCACAGTCAGGTATTGAA+TGG | + | Chr8:29190224-29190243 | None:intergenic | 45.0% |
| AGCCCTAAGCTGTAATCCAC+AGG | - | Chr8:29190405-29190424 | MsG0880043688.01.T01:intron | 50.0% | |
| GAGGCCCTTCAAGTACTTGT+TGG | - | Chr8:29190286-29190305 | MsG0880043688.01.T01:intron | 50.0% | |
| GCAGAACGGGCAAAAGAGTA+TGG | - | Chr8:29190066-29190085 | MsG0880043688.01.T01:intron | 50.0% | |
| GCCAGCCAACAAGTACTTGA+AGG | + | Chr8:29190294-29190313 | None:intergenic | 50.0% | |
| GCTTGGAAGCTAAACTGGCA+AGG | - | Chr8:29190019-29190038 | MsG0880043688.01.T01:intron | 50.0% | |
| GTTCTGCAAAGCAAGGTGGA+TGG | + | Chr8:29190053-29190072 | None:intergenic | 50.0% | |
| TCCACCTTGCTTTGCAGAAC+GGG | - | Chr8:29190053-29190072 | MsG0880043688.01.T01:intron | 50.0% | |
| TCCAGAGCTGGAGCAAAACT+TGG | - | Chr8:29191153-29191172 | MsG0880043688.01.T01:CDS | 50.0% | |
| TCTGCAAAGCAAGGTGGATG+GGG | + | Chr8:29190051-29190070 | None:intergenic | 50.0% | |
| TGAAAACTGCAGCTCAAGCC+GGG | - | Chr8:29189843-29189862 | MsG0880043688.01.T01:CDS | 50.0% | |
| TTTGCCCGTTCTGCAAAGCA+AGG | + | Chr8:29190060-29190079 | None:intergenic | 50.0% | |
| ! | CCCTTCAAGTACTTGTTGGC+TGG | - | Chr8:29190290-29190309 | MsG0880043688.01.T01:intron | 50.0% |
| ! | GGTGGAACAGGCTTGTTTGT+TGG | - | Chr8:29191041-29191060 | MsG0880043688.01.T01:CDS | 50.0% |
| GAAAACTGCAGCTCAAGCCG+GGG | - | Chr8:29189844-29189863 | MsG0880043688.01.T01:CDS | 55.0% | |
| ! | GCCAAGTTTTGCTCCAGCTC+TGG | + | Chr8:29191157-29191176 | None:intergenic | 55.0% |
| CAGTCTCGCACCTCACAGTC+AGG | + | Chr8:29190234-29190253 | None:intergenic | 60.0% | |
| GCCCGTTCTGCAAAGCAAGG+TGG | + | Chr8:29190057-29190076 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 29189842 | 29191236 | 29189842 | ID=MsG0880043688.01;Name=MsG0880043688.01 |
| Chr8 | mRNA | 29189842 | 29191236 | 29189842 | ID=MsG0880043688.01.T01;Parent=MsG0880043688.01;Name=MsG0880043688.01.T01;_AED=0.38;_eAED=0.38;_QI=0|0|0|1|1|1|2|0|256 |
| Chr8 | exon | 29190652 | 29191236 | 29190652 | ID=MsG0880043688.01.T01:exon:6843;Parent=MsG0880043688.01.T01 |
| Chr8 | exon | 29189842 | 29190027 | 29189842 | ID=MsG0880043688.01.T01:exon:6842;Parent=MsG0880043688.01.T01 |
| Chr8 | CDS | 29190652 | 29191236 | 29190652 | ID=MsG0880043688.01.T01:cds;Parent=MsG0880043688.01.T01 |
| Chr8 | CDS | 29189842 | 29190027 | 29189842 | ID=MsG0880043688.01.T01:cds;Parent=MsG0880043688.01.T01 |
| Gene Sequence |
| Protein sequence |
