AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035402.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035402.01.T01 MTR_8g039620 49.459 370 140 4 1 328 66 430 1.75e-110 328
MsG0680035402.01.T01 MTR_3g016210 51.124 356 116 4 1 300 62 415 1.92e-108 323
MsG0680035402.01.T01 MTR_8g072510 52.161 347 120 4 1 305 62 404 1.64e-104 314
MsG0680035402.01.T01 MTR_8g069880 49.051 369 138 7 1 327 59 419 8.24e-104 312
MsG0680035402.01.T01 MTR_8g062410 51.934 362 116 6 1 319 62 408 2.47e-102 308
MsG0680035402.01.T01 MTR_8g040930 46.237 372 144 7 1 325 11 373 3.86e-102 305
MsG0680035402.01.T01 MTR_8g041240 46.237 372 144 7 1 325 11 373 3.86e-102 305
MsG0680035402.01.T01 MTR_7g021090 51.765 340 110 6 1 295 61 391 3.35e-101 304
MsG0680035402.01.T01 MTR_8g066670 50.000 358 133 4 1 316 1127 1480 2.73e-98 318
MsG0680035402.01.T01 MTR_8g467780 44.415 376 149 5 1 319 63 435 3.73e-96 293
MsG0680035402.01.T01 MTR_8g073260 42.820 383 152 8 1 330 63 431 1.08e-92 283
MsG0680035402.01.T01 MTR_1g059930 51.333 300 102 4 1 258 64 361 3.59e-91 279
MsG0680035402.01.T01 MTR_7g451420 54.264 258 75 4 1 217 61 316 9.11e-84 256
MsG0680035402.01.T01 MTR_8g068990 46.984 315 105 6 1 270 64 361 3.96e-82 256
MsG0680035402.01.T01 MTR_3g105650 35.751 386 165 11 1 335 57 410 2.29e-62 204
MsG0680035402.01.T01 MTR_8g073275 33.512 373 185 13 14 330 72 437 1.18e-44 159
MsG0680035402.01.T01 MTR_8g073275 58.559 111 32 1 1 97 11 121 1.94e-36 137
MsG0680035402.01.T01 MTR_1g069110 26.332 319 198 10 4 295 73 381 1.06e-22 98.6
MsG0680035402.01.T01 MTR_7g099580 25.792 221 146 5 3 215 66 276 1.64e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035402.01.T01 AT4G10720 31.481 378 175 9 1 315 57 413 1.27e-48 169
MsG0680035402.01.T01 AT4G10720 31.176 340 167 7 1 291 57 378 2.11e-45 160
MsG0680035402.01.T01 AT1G14500 27.865 384 195 8 3 331 59 415 3.49e-39 144
MsG0680035402.01.T01 AT5G54620 37.109 256 109 6 1 207 57 309 2.85e-38 141
MsG0680035402.01.T01 AT1G14480 30.460 348 195 10 3 331 59 378 6.53e-38 139
MsG0680035402.01.T01 AT1G14480 29.427 384 195 10 3 331 59 421 2.55e-37 139
MsG0680035402.01.T01 AT5G15500 29.443 377 187 10 1 319 58 413 9.38e-36 135
MsG0680035402.01.T01 AT5G54610 34.137 249 116 6 1 203 57 303 3.70e-34 130
MsG0680035402.01.T01 AT5G51160 28.135 327 158 9 9 268 41 357 1.28e-24 103
MsG0680035402.01.T01 AT5G15500 26.748 329 160 10 50 319 1 307 5.38e-18 84.3
MsG0680035402.01.T01 AT5G54700 26.316 304 175 13 40 335 78 340 1.60e-13 71.6
MsG0680035402.01.T01 AT5G54700 25.552 317 180 13 40 335 22 303 5.72e-12 66.2

Find 56 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGCCCTTCAAGTACTTCT+TGG 0.237371 6:+104739301 MsG0680035402.01.T01:CDS
ACGGATTTCCCAGCATTTCC+TGG 0.345494 6:-104740823 None:intergenic
GACTGCCTATTATCTCAGTT+GGG 0.360806 6:-104740930 None:intergenic
AGATAATAGGCAGTCTATTA+AGG 0.369684 6:+104740938 MsG0680035402.01.T01:CDS
CTAACCCCAACTGAGATAAT+AGG 0.381349 6:+104740925 MsG0680035402.01.T01:CDS
GGGGCTCACAATTGATTGAT+AGG 0.384847 6:-104740725 None:intergenic
GTCAAGCATTCAATGGATTC+CGG 0.407639 6:-104739229 None:intergenic
ATGCTTTCTCTTTGCTTGTC+CGG 0.422994 6:+104739210 MsG0680035402.01.T01:CDS
ATTATTACCCCAGGAAATGC+TGG 0.431985 6:+104740814 MsG0680035402.01.T01:CDS
TGTTAAGAATGATCAGTTCC+AGG 0.432510 6:+104739282 MsG0680035402.01.T01:CDS
AGACTGCCTATTATCTCAGT+TGG 0.436888 6:-104740931 None:intergenic
TCTCACAGTCAAGCATTCAA+TGG 0.452338 6:-104739236 None:intergenic
CTTTAGAAGAAATATATTAG+AGG 0.452706 6:+104740654 MsG0680035402.01.T01:CDS
TCATGGATGCTGCAATTGTT+GGG 0.453014 6:-104741017 None:intergenic
TGTAGCACAGGCTCGATTGT+TGG 0.459562 6:+104740427 MsG0680035402.01.T01:intron
CGGATTTCCCAGCATTTCCT+GGG 0.461411 6:-104740822 None:intergenic
GGTAATAATAGTAGAATTTG+AGG 0.463196 6:-104740800 None:intergenic
ATCATGGATGCTGCAATTGT+TGG 0.464120 6:-104741018 None:intergenic
TGCAGGGATGCTAGAAATCA+TGG 0.468854 6:-104741034 None:intergenic
TTTAGCTTCCAAGAAAATGA+AGG 0.469976 6:-104739025 None:intergenic
ACAAATACAATTACAAATGC+AGG 0.479127 6:-104741051 None:intergenic
AAGAAAATATTATTAAATGT+TGG 0.492021 6:+104740526 MsG0680035402.01.T01:CDS
GAAGTTGGATGTTGACAATA+CGG 0.493710 6:-104740842 None:intergenic
AAAGACTCTGATAGATTTGA+CGG 0.519508 6:+104740451 MsG0680035402.01.T01:CDS
TCTTGGAAGCTAAATGCTGA+AGG 0.524800 6:+104739034 MsG0680035402.01.T01:CDS
ATCCATCTTGCTATGCAAAA+CGG 0.531789 6:+104739067 MsG0680035402.01.T01:CDS
AAAGAACTTGTTAAAGTGCA+AGG 0.532557 6:+104739127 MsG0680035402.01.T01:CDS
GCCAACCAAGAAGTACTTGA+AGG 0.535702 6:-104739306 None:intergenic
ATTTGACTTGCAAAATGAAG+AGG 0.542519 6:-104739166 None:intergenic
GCAAAACGGTCAAACAATGA+TGG 0.544713 6:+104739081 MsG0680035402.01.T01:CDS
TTAGACATTGCAACTACTGC+AGG 0.546899 6:+104740499 MsG0680035402.01.T01:CDS
GTATCACTGACTTCTGAGGC+AGG 0.546924 6:-104740556 None:intergenic
CAAGAAGTACTTGAAGGGCC+TGG 0.547051 6:-104739300 None:intergenic
AATTCTACTATTATTACCCC+AGG 0.568581 6:+104740805 MsG0680035402.01.T01:CDS
GTTAAAGTGCAAGGAAGAGA+AGG 0.568998 6:+104739136 MsG0680035402.01.T01:CDS
TTAGCCTGATAAACTCCACC+AGG 0.571244 6:-104740748 None:intergenic
TAGAGGAGCAACGTAACACT+TGG 0.572878 6:+104740671 MsG0680035402.01.T01:CDS
TTTGCATAGCAAGATGGATG+GGG 0.573527 6:-104739063 None:intergenic
TCTTAGTCTATCTGCAAGTG+TGG 0.575281 6:-104740581 None:intergenic
GACAAACATAAGTACTGCAC+CGG 0.582285 6:-104740962 None:intergenic
ATAGGCAGTCTATTAAGGTC+CGG 0.588516 6:+104740943 MsG0680035402.01.T01:CDS
CAAATACAATTACAAATGCA+GGG 0.594738 6:-104741050 None:intergenic
ACTGCCTATTATCTCAGTTG+GGG 0.598482 6:-104740929 None:intergenic
TTATTACCCCAGGAAATGCT+GGG 0.603046 6:+104740815 MsG0680035402.01.T01:CDS
TCATAGTAATTATATAGCAA+AGG 0.612554 6:-104740984 None:intergenic
CTTAGTCTATCTGCAAGTGT+GGG 0.615195 6:-104740580 None:intergenic
CCAACCAAGAAGTACTTGAA+GGG 0.638063 6:-104739305 None:intergenic
GGGAGTATCACTGACTTCTG+AGG 0.643167 6:-104740560 None:intergenic
TGGTGTACTCTAGACTTCAA+CGG 0.646044 6:+104741097 MsG0680035402.01.T01:CDS
GCCTGATAAACTCCACCAGG+GGG 0.647842 6:-104740745 None:intergenic
CATGGATGCTGCAATTGTTG+GGG 0.653458 6:-104741016 None:intergenic
AGTAGTTGCAATGTCTAATG+CGG 0.664859 6:-104740494 None:intergenic
AGCCTGATAAACTCCACCAG+GGG 0.665796 6:-104740746 None:intergenic
GGATTTCCCAGCATTTCCTG+GGG 0.671158 6:-104740821 None:intergenic
TAGCCTGATAAACTCCACCA+GGG 0.682940 6:-104740747 None:intergenic
CCTGATAAACTCCACCAGGG+GGG 0.741917 6:-104740744 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGAAAAAAAAACTAAA+AGG + Chr6:104739534-104739553 MsG0680035402.01.T01:intron 10.0%
!! AAGAAAATATTATTAAATGT+TGG + Chr6:104740526-104740545 MsG0680035402.01.T01:CDS 10.0%
!! TTAAAACTTTCAAAACTTAA+AGG + Chr6:104739676-104739695 MsG0680035402.01.T01:intron 15.0%
!!! AAGTTTTGAAAGTTTTAATT+AGG - Chr6:104739674-104739693 None:intergenic 15.0%
!! AAACAAAATACTAAATCAGA+AGG + Chr6:104739366-104739385 MsG0680035402.01.T01:intron 20.0%
!! AAGTATTATGTCAAACTAAA+AGG + Chr6:104740250-104740269 MsG0680035402.01.T01:intron 20.0%
!! AATTAAAAAAAGAAGGAAGT+TGG - Chr6:104740860-104740879 None:intergenic 20.0%
!! ACAAAAAAGGAAATCATATT+CGG - Chr6:104740883-104740902 None:intergenic 20.0%
!! ATTCAATTAACTTTCAACAA+TGG + Chr6:104739847-104739866 MsG0680035402.01.T01:intron 20.0%
!! TATTCGGAATTAAAAAAAGA+AGG - Chr6:104740867-104740886 None:intergenic 20.0%
!! TCATAGTAATTATATAGCAA+AGG - Chr6:104740987-104741006 None:intergenic 20.0%
!! TGCTATAATTGATACAAAAA+AGG - Chr6:104740896-104740915 None:intergenic 20.0%
!!! ATTGCAAGTTATTTAATTTC+AGG - Chr6:104740134-104740153 None:intergenic 20.0%
!!! CTTTAGAAGAAATATATTAG+AGG + Chr6:104740654-104740673 MsG0680035402.01.T01:CDS 20.0%
!!! GATATCTTTTATTACTACAT+CGG - Chr6:104739807-104739826 None:intergenic 20.0%
!!! TGTTATTTTCTAATATGTGA+GGG - Chr6:104739506-104739525 None:intergenic 20.0%
!!! TTGAAACTTTTGAAACTTAA+AGG + Chr6:104739616-104739635 MsG0680035402.01.T01:intron 20.0%
! AAATGTGTGACACTTAATAT+AGG + Chr6:104740338-104740357 MsG0680035402.01.T01:intron 25.0%
! ACAAATACAATTACAAATGC+AGG - Chr6:104741054-104741073 None:intergenic 25.0%
! CAAATACAATTACAAATGCA+GGG - Chr6:104741053-104741072 None:intergenic 25.0%
! CATGAACAATCTCTAATAAA+TGG + Chr6:104740380-104740399 MsG0680035402.01.T01:intron 25.0%
! GGTAATAATAGTAGAATTTG+AGG - Chr6:104740803-104740822 None:intergenic 25.0%
!! GTATTTGTCCAGTTTTTATA+TGG + Chr6:104741066-104741085 MsG0680035402.01.T01:CDS 25.0%
!!! CCTATTTGAAACTTTTGAAA+CGG + Chr6:104739558-104739577 MsG0680035402.01.T01:intron 25.0%
!!! GTGTTATTTTCTAATATGTG+AGG - Chr6:104739507-104739526 None:intergenic 25.0%
!!! GTTATTTTCTAATATGTGAG+GGG - Chr6:104739505-104739524 None:intergenic 25.0%
AAAGACTCTGATAGATTTGA+CGG + Chr6:104740451-104740470 MsG0680035402.01.T01:CDS 30.0%
AAAGGATCAAAAGTGGTATT+TGG + Chr6:104740268-104740287 MsG0680035402.01.T01:intron 30.0%
AATACTAAATCAGAAGGATG+AGG + Chr6:104739372-104739391 MsG0680035402.01.T01:intron 30.0%
AATTCTACTATTATTACCCC+AGG + Chr6:104740805-104740824 MsG0680035402.01.T01:CDS 30.0%
AGAATTAATAAGTGAACCAC+AGG + Chr6:104739423-104739442 MsG0680035402.01.T01:intron 30.0%
AGATAATAGGCAGTCTATTA+AGG + Chr6:104740938-104740957 MsG0680035402.01.T01:CDS 30.0%
ATAAAAGATATCGTTTCGAC+AGG + Chr6:104739815-104739834 MsG0680035402.01.T01:intron 30.0%
CAAACTAAAAGGATCAAAAG+TGG + Chr6:104740261-104740280 MsG0680035402.01.T01:intron 30.0%
CCGTTTCAAAAGTTTCAAAT+AGG - Chr6:104739561-104739580 None:intergenic 30.0%
GAGAATTCTGTCAAACTAAA+AGG + Chr6:104739647-104739666 MsG0680035402.01.T01:intron 30.0%
TAAAAGATATCGTTTCGACA+GGG + Chr6:104739816-104739835 MsG0680035402.01.T01:intron 30.0%
TAATCTAATGTCATTGCACA+AGG - Chr6:104739452-104739471 None:intergenic 30.0%
! CTTCATTTTGCAAGTCAAAT+TGG + Chr6:104739169-104739188 MsG0680035402.01.T01:CDS 30.0%
! TGTTGAAACCTTCATTTTCT+TGG + Chr6:104739017-104739036 MsG0680035402.01.T01:CDS 30.0%
! TTTAGCTTCCAAGAAAATGA+AGG - Chr6:104739028-104739047 None:intergenic 30.0%
!! AAAAAGTGCCTTGAGATTAT+TGG + Chr6:104739929-104739948 MsG0680035402.01.T01:intron 30.0%
!! AAAGAACTTGTTAAAGTGCA+AGG + Chr6:104739127-104739146 MsG0680035402.01.T01:CDS 30.0%
!! ACCATAAAGTTCTAGGTTTA+GGG - Chr6:104739988-104740007 None:intergenic 30.0%
!! AGAGTTTGAGTTGAAAAGTT+TGG + Chr6:104739877-104739896 MsG0680035402.01.T01:intron 30.0%
!! ATTTGACTTGCAAAATGAAG+AGG - Chr6:104739169-104739188 None:intergenic 30.0%
ACCCTAAACCTAGAACTTTA+TGG + Chr6:104739984-104740003 MsG0680035402.01.T01:intron 35.0%
AGTAGTTGCAATGTCTAATG+CGG - Chr6:104740497-104740516 None:intergenic 35.0%
ATCAACCATGAAAATAGACG+TGG - Chr6:104740074-104740093 None:intergenic 35.0%
ATGACGAACCAATAATCTCA+AGG - Chr6:104739940-104739959 None:intergenic 35.0%
GAAGTTGGATGTTGACAATA+CGG - Chr6:104740845-104740864 None:intergenic 35.0%
GTGTGACACTTAATATAGGA+CGG + Chr6:104740342-104740361 MsG0680035402.01.T01:intron 35.0%
TCATGATTACTTTGTAGCAC+AGG + Chr6:104740415-104740434 MsG0680035402.01.T01:intron 35.0%
TGTTAAGAATGATCAGTTCC+AGG + Chr6:104739282-104739301 MsG0680035402.01.T01:CDS 35.0%
! ATCCATCTTGCTATGCAAAA+CGG + Chr6:104739067-104739086 MsG0680035402.01.T01:CDS 35.0%
! CTACGACGTGATACTTATTT+TGG + Chr6:104740299-104740318 MsG0680035402.01.T01:intron 35.0%
! TGTCACATTTTCTTGTATCG+TGG - Chr6:104740620-104740639 None:intergenic 35.0%
! TTTTGCAAGTCAAATTGGTG+AGG + Chr6:104739174-104739193 MsG0680035402.01.T01:CDS 35.0%
! TTTTGCATAGCAAGATGGAT+GGG - Chr6:104739067-104739086 None:intergenic 35.0%
!! AAAGTTCTAGGTTTAGGGTT+TGG - Chr6:104739983-104740002 None:intergenic 35.0%
!! CACCATAAAGTTCTAGGTTT+AGG - Chr6:104739989-104740008 None:intergenic 35.0%
!! CCAGTTTTTATATGGTGCTA+CGG + Chr6:104741074-104741093 MsG0680035402.01.T01:CDS 35.0%
!! TTGAGATTATTGGTTCGTCA+TGG + Chr6:104739939-104739958 MsG0680035402.01.T01:intron 35.0%
ACCTAGAACTTTATGGTGAC+AGG + Chr6:104739991-104740010 MsG0680035402.01.T01:intron 40.0%
ACCTGTCACCATAAAGTTCT+AGG - Chr6:104739995-104740014 None:intergenic 40.0%
ACTGCCTATTATCTCAGTTG+GGG - Chr6:104740932-104740951 None:intergenic 40.0%
AGACTGCCTATTATCTCAGT+TGG - Chr6:104740934-104740953 None:intergenic 40.0%
AGTATCACGTCGTAGTTTCA+AGG - Chr6:104740294-104740313 None:intergenic 40.0%
ATAGGCAGTCTATTAAGGTC+CGG + Chr6:104740943-104740962 MsG0680035402.01.T01:CDS 40.0%
ATCATGGATGCTGCAATTGT+TGG - Chr6:104741021-104741040 None:intergenic 40.0%
ATGCTTTCTCTTTGCTTGTC+CGG + Chr6:104739210-104739229 MsG0680035402.01.T01:CDS 40.0%
ATTATTACCCCAGGAAATGC+TGG + Chr6:104740814-104740833 MsG0680035402.01.T01:CDS 40.0%
CCGTAGCACCATATAAAAAC+TGG - Chr6:104741077-104741096 None:intergenic 40.0%
CTAACCCCAACTGAGATAAT+AGG + Chr6:104740925-104740944 MsG0680035402.01.T01:CDS 40.0%
CTCAAAACAAATTGCGAGAG+AGG + Chr6:104739328-104739347 MsG0680035402.01.T01:intron 40.0%
CTTAGTCTATCTGCAAGTGT+GGG - Chr6:104740583-104740602 None:intergenic 40.0%
GACTGCCTATTATCTCAGTT+GGG - Chr6:104740933-104740952 None:intergenic 40.0%
GCAAAACGGTCAAACAATGA+TGG + Chr6:104739081-104739100 MsG0680035402.01.T01:CDS 40.0%
GTTAAAGTGCAAGGAAGAGA+AGG + Chr6:104739136-104739155 MsG0680035402.01.T01:CDS 40.0%
TAGCCTATCACATCTCCTTT+CGG + Chr6:104740022-104740041 MsG0680035402.01.T01:intron 40.0%
TCATGGATGCTGCAATTGTT+GGG - Chr6:104741020-104741039 None:intergenic 40.0%
TCTCACAGTCAAGCATTCAA+TGG - Chr6:104739239-104739258 None:intergenic 40.0%
TCTTAGTCTATCTGCAAGTG+TGG - Chr6:104740584-104740603 None:intergenic 40.0%
TCTTGGAAGCTAAATGCTGA+AGG + Chr6:104739034-104739053 MsG0680035402.01.T01:CDS 40.0%
TGGTGTACTCTAGACTTCAA+CGG + Chr6:104741097-104741116 MsG0680035402.01.T01:CDS 40.0%
TTAGACATTGCAACTACTGC+AGG + Chr6:104740499-104740518 MsG0680035402.01.T01:CDS 40.0%
TTATTACCCCAGGAAATGCT+GGG + Chr6:104740815-104740834 MsG0680035402.01.T01:CDS 40.0%
TTTGCATAGCAAGATGGATG+GGG - Chr6:104739066-104739085 None:intergenic 40.0%
! AGCAACCACGTCTATTTTCA+TGG + Chr6:104740066-104740085 MsG0680035402.01.T01:intron 40.0%
! GACAAACATAAGTACTGCAC+CGG - Chr6:104740965-104740984 None:intergenic 40.0%
! GTCAAGCATTCAATGGATTC+CGG - Chr6:104739232-104739251 None:intergenic 40.0%
! GTTTAGGGTTTGGTTTCTGA+AGG - Chr6:104739973-104739992 None:intergenic 40.0%
! GTTTTGCATAGCAAGATGGA+TGG - Chr6:104739068-104739087 None:intergenic 40.0%
!! CCAACCAAGAAGTACTTGAA+GGG - Chr6:104739308-104739327 None:intergenic 40.0%
!!! GTTTTTATATGGTGCTACGG+TGG + Chr6:104741077-104741096 MsG0680035402.01.T01:CDS 40.0%
AGACCGAAAGGAGATGTGAT+AGG - Chr6:104740028-104740047 None:intergenic 45.0%
CATGGATGCTGCAATTGTTG+GGG - Chr6:104741019-104741038 None:intergenic 45.0%
CCCTTCAAGTACTTCTTGGT+TGG + Chr6:104739305-104739324 MsG0680035402.01.T01:intron 45.0%
CTAAATCAGAAGGATGAGGC+AGG + Chr6:104739376-104739395 MsG0680035402.01.T01:intron 45.0%
GGGGCTCACAATTGATTGAT+AGG - Chr6:104740728-104740747 None:intergenic 45.0%
GTAGTAAATCCGCAAGTGCA+CGG + Chr6:104739777-104739796 MsG0680035402.01.T01:intron 45.0%
TAGAGGAGCAACGTAACACT+TGG + Chr6:104740671-104740690 MsG0680035402.01.T01:CDS 45.0%
TAGCCTGATAAACTCCACCA+GGG - Chr6:104740750-104740769 None:intergenic 45.0%
TCATTGCACAAGGTTACCTG+TGG - Chr6:104739442-104739461 None:intergenic 45.0%
TGCAGGGATGCTAGAAATCA+TGG - Chr6:104741037-104741056 None:intergenic 45.0%
TTAGCCTGATAAACTCCACC+AGG - Chr6:104740751-104740770 None:intergenic 45.0%
! GACCGTTTTGCATAGCAAGA+TGG - Chr6:104739072-104739091 None:intergenic 45.0%
!! GCCAACCAAGAAGTACTTGA+AGG - Chr6:104739309-104739328 None:intergenic 45.0%
ACACACTCACTGAGACCGAA+AGG - Chr6:104740040-104740059 None:intergenic 50.0%
ACGGATTTCCCAGCATTTCC+TGG - Chr6:104740826-104740845 None:intergenic 50.0%
AGCCTGATAAACTCCACCAG+GGG - Chr6:104740749-104740768 None:intergenic 50.0%
ATCGGTAAACCGTGCACTTG+CGG - Chr6:104739789-104739808 None:intergenic 50.0%
CAGGCCCTTCAAGTACTTCT+TGG + Chr6:104739301-104739320 MsG0680035402.01.T01:CDS 50.0%
CGGATTTCCCAGCATTTCCT+GGG - Chr6:104740825-104740844 None:intergenic 50.0%
GGATTTCCCAGCATTTCCTG+GGG - Chr6:104740824-104740843 None:intergenic 50.0%
TGTAGCACAGGCTCGATTGT+TGG + Chr6:104740427-104740446 MsG0680035402.01.T01:intron 50.0%
!! CAAGAAGTACTTGAAGGGCC+TGG - Chr6:104739303-104739322 None:intergenic 50.0%
!! GGGAGTATCACTGACTTCTG+AGG - Chr6:104740563-104740582 None:intergenic 50.0%
!! GTATCACTGACTTCTGAGGC+AGG - Chr6:104740559-104740578 None:intergenic 50.0%
CAATCAATTGTGAGCCCCCC+TGG + Chr6:104740730-104740749 MsG0680035402.01.T01:CDS 55.0%
CCTGATAAACTCCACCAGGG+GGG - Chr6:104740747-104740766 None:intergenic 55.0%
GCCTGATAAACTCCACCAGG+GGG - Chr6:104740748-104740767 None:intergenic 55.0%
! CGAGAGAGGTGCAAAAGAGC+TGG + Chr6:104739342-104739361 MsG0680035402.01.T01:intron 55.0%
CCCCCCTGGTGGAGTTTATC+AGG + Chr6:104740744-104740763 MsG0680035402.01.T01:CDS 60.0%
TCAATTGTGAGCCCCCCTGG+TGG + Chr6:104740733-104740752 MsG0680035402.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 104739013 104741140 104739013 ID=MsG0680035402.01;Name=MsG0680035402.01
Chr6 mRNA 104739013 104741140 104739013 ID=MsG0680035402.01.T01;Parent=MsG0680035402.01;Name=MsG0680035402.01.T01;_AED=0.34;_eAED=0.35;_QI=0|0|0|1|1|1|2|0|337
Chr6 exon 104739013 104739322 104739013 ID=MsG0680035402.01.T01:exon:11241;Parent=MsG0680035402.01.T01
Chr6 exon 104740437 104741140 104740437 ID=MsG0680035402.01.T01:exon:11242;Parent=MsG0680035402.01.T01
Chr6 CDS 104739013 104739322 104739013 ID=MsG0680035402.01.T01:cds;Parent=MsG0680035402.01.T01
Chr6 CDS 104740437 104741140 104740437 ID=MsG0680035402.01.T01:cds;Parent=MsG0680035402.01.T01
Gene Sequence

>MsG0680035402.01.T01

ATGATGTTGAAACCTTCATTTTCTTGGAAGCTAAATGCTGAAGGATTCAGCCCCATCCATCTTGCTATGCAAAACGGTCAAACAATGATGGTATCTCGCTTTGTTAACATCAATAAAGAACTTGTTAAAGTGCAAGGAAGAGAAGGCATAACTCCTCTTCATTTTGCAAGTCAAATTGGTGAGGTTGATCTTTTAGCATGCTTTCTCTTTGCTTGTCCGGAATCCATTGAATGCTTGACTGTGAGACAAGAGACTGCACTGCATATTGCTGTTAAGAATGATCAGTTCCAGGCCCTTCAAGTACTTCTTGGCTCGATTGTTGGTAAAGACTCTGATAGATTTGACGGCAAGAAACTTAGAGAACAAACCGCATTAGACATTGCAACTACTGCAGGAATCAAGAAAATATTATTAAATGTTGGAGCGAAACCTGCCTCAGAAGTCAGTGATACTCCCACACTTGCAGATAGACTAAGATTAAGATCAAACACCACGATACAAGAAAATGTGACAATTTTTATGAGTCGCTTTAGAAGAAATATATTAGAGGAGCAACGTAACACTTGGTTGATAATTGCGACTCTTGTTGCGACTGCAACCTATCAATCAATTGTGAGCCCCCCTGGTGGAGTTTATCAGGCTAATGCTAGTGACAATACTGTGAACATCACTTCCTCAAATTCTACTATTATTACCCCAGGAAATGCTGGGAAATCCGTATTGTCAACATCCAACTTCCTTCTTTTTTTAATTCCGAATATGATTTCCTTTTTTGTATCAATTATAGCAATAGTTTGTCTAACCCCAACTGAGATAATAGGCAGTCTATTAAGGTCCGGTGCAGTACTTATGTTTGTCCTTTGCTATATAATTACTATGACTATTATTTCCCCAACAATTGCAGCATCCATGATTTCTAGCATCCCTGCATTTGTAATTGTATTTGTCCAGTTTTTATATGGTGCTACGGTGGTGTACTCTAGACTTCAACGGAAGCTGTGTATGTCTTCTTAG
Protein sequence

>MsG0680035402.01.T01

MMLKPSFSWKLNAEGFSPIHLAMQNGQTMMVSRFVNINKELVKVQGREGITPLHFASQIGEVDLLACFLFACPESIECLTVRQETALHIAVKNDQFQALQVLLGSIVGKDSDRFDGKKLREQTALDIATTAGIKKILLNVGAKPASEVSDTPTLADRLRLRSNTTIQENVTIFMSRFRRNILEEQRNTWLIIATLVATATYQSIVSPPGGVYQANASDNTVNITSSNSTIITPGNAGKSVLSTSNFLLFLIPNMISFFVSIIAIVCLTPTEIIGSLLRSGAVLMFVLCYIITMTIISPTIAASMISSIPAFVIVFVQFLYGATVVYSRLQRKLCMSS*