AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048829.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048829.01.T01 MTR_1g106795 86.010 772 51 5 1 772 1 715 0.0 1252
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048829.01.T01 AT1G49870 43.380 793 303 23 102 764 9 785 4.57e-164 494
MsG0080048829.01.T01 AT1G49870 43.159 804 311 23 91 764 36 823 2.26e-163 494

Find 12 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTTGATAACAAGGAATT+TGG 0.250470 contig473end:+13501 MsG0080048829.01.T01:exon
AACAACATTTACACATTCAA+TGG 0.333707 contig473end:-13526 None:intergenic
TGCTTGCTTTCTAGGCTGCC+TGG 0.377702 contig473end:+13394 MsG0080048829.01.T01:intron
ATACTAGCCCCTCTGAAACT+TGG 0.464721 contig473end:+13624 MsG0080048829.01.T01:exon
CTCAGCTTCAGCTTTAATCC+AGG 0.486257 contig473end:-13412 None:intergenic
TCTCATCTTTGTTGATAACA+AGG 0.555873 contig473end:+13494 MsG0080048829.01.T01:exon
AACGAAAACCAAGTTTCAGA+GGG 0.590512 contig473end:-13632 None:intergenic
TTAAAGCTGAAGCTGAGGAA+AGG 0.616555 contig473end:+13418 MsG0080048829.01.T01:exon
AAACGAAAACCAAGTTTCAG+AGG 0.618239 contig473end:-13633 None:intergenic
CTGGATTAAAGCTGAAGCTG+AGG 0.623687 contig473end:+13413 MsG0080048829.01.T01:exon
TGAGGAAAGGAAGCAAGCAA+TGG 0.648935 contig473end:+13431 MsG0080048829.01.T01:exon
ACGAAAACCAAGTTTCAGAG+GGG 0.765357 contig473end:-13631 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGCAAAAAAAAAAAAAAAA+AGG - contig473end:13379-13398 None:intergenic 10.0%
!! CAAAAAGAAAAAATTAAAAT+GGG - contig473end:13303-13322 None:intergenic 10.0%
!! TAAAATTGATATTTAATGAA+TGG - contig473end:10181-10200 None:intergenic 10.0%
!!! AAATATAGTTTTCATTTTAA+AGG - contig473end:13687-13706 None:intergenic 10.0%
!! AAAGGAAAAAATCAAATAAA+GGG - contig473end:13669-13688 None:intergenic 15.0%
!! GCAAAAAGAAAAAATTAAAA+TGG - contig473end:13304-13323 None:intergenic 15.0%
!! TAAAGGAAAAAATCAAATAA+AGG - contig473end:13670-13689 None:intergenic 15.0%
!! AAGCTTAATGCAAATAAAAT+AGG + contig473end:11431-11450 MsG0080048829.01.T01:intron 20.0%
!! AATATAACAAGTAATCTCTA+AGG - contig473end:10371-10390 None:intergenic 20.0%
!! AATTCATCTTTACTAAATGA+AGG - contig473end:11852-11871 None:intergenic 20.0%
!! AATTGAAACTCATCAATTTA+GGG - contig473end:10242-10261 None:intergenic 20.0%
!! AATTGATATTTAATGAATGG+TGG - contig473end:10178-10197 None:intergenic 20.0%
!! ATAGCTCACTATATTTATTT+AGG - contig473end:10525-10544 None:intergenic 20.0%
!! ATTCATCTTTACTAAATGAA+GGG - contig473end:11851-11870 None:intergenic 20.0%
!! ATTTATGTTTAACCAAAACT+TGG - contig473end:13057-13076 None:intergenic 20.0%
!! GCTTAACTAAAAATTTATCT+AGG - contig473end:12325-12344 None:intergenic 20.0%
!! TATGATTTACAAAGCTAAAT+TGG + contig473end:10813-10832 MsG0080048829.01.T01:intron 20.0%
!! TGAAAATAGAATAAAACTTG+TGG + contig473end:12073-12092 MsG0080048829.01.T01:CDS 20.0%
!!! ATTTACAAATCTTTGAAAAC+AGG + contig473end:11489-11508 MsG0080048829.01.T01:intron 20.0%
! AAACCATATTGAAAGTTATG+TGG + contig473end:11512-11531 MsG0080048829.01.T01:intron 25.0%
! AACAAACTATGATCTATATC+TGG - contig473end:10276-10295 None:intergenic 25.0%
! AACAACATTTACACATTCAA+TGG - contig473end:13529-13548 None:intergenic 25.0%
! AATAAATTGACGAAGGAATT+AGG + contig473end:10939-10958 MsG0080048829.01.T01:CDS 25.0%
! ACTAAAAATTTATCTAGGCT+AGG - contig473end:12320-12339 None:intergenic 25.0%
! ATGATAGAAGAAAACAAAGA+TGG + contig473end:12755-12774 MsG0080048829.01.T01:CDS 25.0%
! CAATTGAAACTCATCAATTT+AGG - contig473end:10243-10262 None:intergenic 25.0%
! CACATAATTCTTGTAATCAA+GGG - contig473end:10791-10810 None:intergenic 25.0%
! CATAGGAATGAAACTAAATT+AGG + contig473end:12389-12408 MsG0080048829.01.T01:CDS 25.0%
! GAATGAAACTAAATTAGGTA+AGG + contig473end:12394-12413 MsG0080048829.01.T01:CDS 25.0%
! GTAAACACCAATAAAATTCT+CGG - contig473end:11565-11584 None:intergenic 25.0%
! GTATTATTACTACTATGAAC+CGG - contig473end:10503-10522 None:intergenic 25.0%
! TCACATAATTCTTGTAATCA+AGG - contig473end:10792-10811 None:intergenic 25.0%
! TGATAGAAGAAAACAAAGAT+GGG + contig473end:12756-12775 MsG0080048829.01.T01:CDS 25.0%
! TTAATGCAAATAAAATAGGC+TGG + contig473end:11435-11454 MsG0080048829.01.T01:intron 25.0%
!! AGTTAATAGGAGAAGTTTTA+CGG - contig473end:11022-11041 None:intergenic 25.0%
!! ATATTTAATGAATGGTGGAA+TGG - contig473end:10173-10192 None:intergenic 25.0%
!! CTAATTTAGTTTCATTCCTA+TGG - contig473end:12391-12410 None:intergenic 25.0%
!! GTAATCAGAATTTTCAACAA+TGG + contig473end:10034-10053 MsG0080048829.01.T01:exon 25.0%
!!! AGAATTTTATTGGTGTTTAC+AGG + contig473end:11565-11584 MsG0080048829.01.T01:intron 25.0%
!!! ATCAATTTAGGGTTTTGAAT+CGG - contig473end:10231-10250 None:intergenic 25.0%
!!! TTTGTTGATAACAAGGAATT+TGG + contig473end:13501-13520 MsG0080048829.01.T01:exon 25.0%
!!! TTTTTTTTTGCTTGCTTTCT+AGG + contig473end:13386-13405 MsG0080048829.01.T01:intron 25.0%
AAAAGTTATCGTCACAAATC+AGG + contig473end:10985-11004 MsG0080048829.01.T01:CDS 30.0%
AACTTCTTTGTCTACATCAA+AGG - contig473end:11787-11806 None:intergenic 30.0%
ATTCCAAGATATCATTTCCA+GGG + contig473end:12015-12034 MsG0080048829.01.T01:CDS 30.0%
CTCAATACTCTTGAATAATG+CGG - contig473end:11309-11328 None:intergenic 30.0%
GAAACTTGGTAGAAGAAATT+AGG - contig473end:10569-10588 None:intergenic 30.0%
GATATACGTTTCTCATATTC+AGG + contig473end:11168-11187 MsG0080048829.01.T01:intron 30.0%
GATTCTTCTCCAATAATAGA+GGG - contig473end:11729-11748 None:intergenic 30.0%
GTAAAACTTCTCCTATTAAC+TGG + contig473end:11021-11040 MsG0080048829.01.T01:CDS 30.0%
TACAAACAAAGAAAGAGTCA+TGG + contig473end:12863-12882 MsG0080048829.01.T01:CDS 30.0%
TCAATACTCTTGAATAATGC+GGG - contig473end:11308-11327 None:intergenic 30.0%
TCTATTTGACAATGCTTCTT+TGG - contig473end:11702-11721 None:intergenic 30.0%
TCTTGCTGGAAAATTAATTG+CGG - contig473end:12222-12241 None:intergenic 30.0%
TTGCCACATAACTTTCAATA+TGG - contig473end:11518-11537 None:intergenic 30.0%
TTTATCCAAACTCTCACATT+CGG - contig473end:12903-12922 None:intergenic 30.0%
TTTGTTTGTAGTTTACAACC+CGG - contig473end:12853-12872 None:intergenic 30.0%
! AAATTAAGATGCTTCAGGTT+TGG + contig473end:11081-11100 MsG0080048829.01.T01:intron 30.0%
! CTGAAAACCGAGAATTTTAT+TGG + contig473end:11555-11574 MsG0080048829.01.T01:intron 30.0%
! TCTCAAACTTTTGTTCTCAT+TGG - contig473end:12681-12700 None:intergenic 30.0%
! TGAGAGTTTGGATAAAGTTT+TGG + contig473end:12907-12926 MsG0080048829.01.T01:CDS 30.0%
! TTCATTCCTATGGTTTTTCT+TGG - contig473end:12381-12400 None:intergenic 30.0%
! TTGATAGTTTAGGGACTAAA+TGG + contig473end:10843-10862 MsG0080048829.01.T01:intron 30.0%
!! GCATTATTCAAGAGTATTGA+GGG + contig473end:11308-11327 MsG0080048829.01.T01:CDS 30.0%
!! TCTCATCTTTGTTGATAACA+AGG + contig473end:13494-13513 MsG0080048829.01.T01:exon 30.0%
!!! TAACCCAATTAGTTTTTCTG+TGG + contig473end:13123-13142 MsG0080048829.01.T01:CDS 30.0%
AAACGAAAACCAAGTTTCAG+AGG - contig473end:13636-13655 None:intergenic 35.0%
AAATAAAGACCGGGAATGAA+TGG + contig473end:12960-12979 MsG0080048829.01.T01:CDS 35.0%
AAATGAATCACCATGAGTTG+AGG - contig473end:10630-10649 None:intergenic 35.0%
AACGAAAACCAAGTTTCAGA+GGG - contig473end:13635-13654 None:intergenic 35.0%
AAGACTTGAAAAGGAAGTTC+AGG + contig473end:12637-12656 MsG0080048829.01.T01:CDS 35.0%
AATAAAGACCGGGAATGAAT+GGG + contig473end:12961-12980 MsG0080048829.01.T01:CDS 35.0%
AATCCCTGGAAATGATATCT+TGG - contig473end:12021-12040 None:intergenic 35.0%
ACAATGCTTCTTTGGACAAT+CGG - contig473end:11694-11713 None:intergenic 35.0%
ACATGTCTCAAGACTTGAAA+AGG + contig473end:12628-12647 MsG0080048829.01.T01:CDS 35.0%
AGAAGAAAACAAAGATGGGT+TGG + contig473end:12760-12779 MsG0080048829.01.T01:CDS 35.0%
AGAAGAACATGAACAAAGAG+TGG - contig473end:10599-10618 None:intergenic 35.0%
AGAAGAATTCGGTACGTATA+GGG + contig473end:10457-10476 MsG0080048829.01.T01:CDS 35.0%
AGAAGGAGAAAATAAAGACC+GGG + contig473end:12951-12970 MsG0080048829.01.T01:CDS 35.0%
AGCAAAGATTAAGTCAGCAA+AGG + contig473end:12523-12542 MsG0080048829.01.T01:CDS 35.0%
AGCAGAAGCTCAACTATTAA+TGG + contig473end:11602-11621 MsG0080048829.01.T01:CDS 35.0%
AGCTCTTGTAAATCTGTTGA+TGG + contig473end:12419-12438 MsG0080048829.01.T01:CDS 35.0%
ATAGAGACACCCTCTATTAT+TGG + contig473end:11717-11736 MsG0080048829.01.T01:CDS 35.0%
ATTGGAAAGAGAAAAGTTGC+AGG + contig473end:12811-12830 MsG0080048829.01.T01:CDS 35.0%
CAACATAGTCACATAATTCG+CGG + contig473end:10393-10412 MsG0080048829.01.T01:intron 35.0%
CGATTCTTCTCCAATAATAG+AGG - contig473end:11730-11749 None:intergenic 35.0%
CTTGCTGGAAAATTAATTGC+GGG - contig473end:12221-12240 None:intergenic 35.0%
GAGAAGGAGAAAATAAAGAC+CGG + contig473end:12950-12969 MsG0080048829.01.T01:CDS 35.0%
GAGCCACAGAAAAACTAATT+GGG - contig473end:13129-13148 None:intergenic 35.0%
GAGGAAAATTAAGATGCTTC+AGG + contig473end:11076-11095 MsG0080048829.01.T01:CDS 35.0%
GATGACTTTCATCTGTATCA+GGG - contig473end:11905-11924 None:intergenic 35.0%
GATTCCAAGATATCATTTCC+AGG + contig473end:12014-12033 MsG0080048829.01.T01:CDS 35.0%
GCAACTATAGTTGCAACTTA+TGG + contig473end:12149-12168 MsG0080048829.01.T01:CDS 35.0%
GGAAAATTAATTGCGGGATT+GGG - contig473end:12215-12234 None:intergenic 35.0%
GGATTATTGAGAGGAAAAGT+AGG + contig473end:12036-12055 MsG0080048829.01.T01:CDS 35.0%
TAATGCTTCACCAGAAGAAA+AGG - contig473end:12708-12727 None:intergenic 35.0%
TAGTTTAGGGACTAAATGGA+TGG + contig473end:10847-10866 MsG0080048829.01.T01:intron 35.0%
TCTCATATTCAGGAAGTAGA+TGG + contig473end:11243-11262 MsG0080048829.01.T01:intron 35.0%
TGATACAGATGAAAGTCATC+AGG + contig473end:11905-11924 MsG0080048829.01.T01:CDS 35.0%
TGATGACTTTCATCTGTATC+AGG - contig473end:11906-11925 None:intergenic 35.0%
TGGAAAATTAATTGCGGGAT+TGG - contig473end:12216-12235 None:intergenic 35.0%
TGTGCAGAATAAATTGACGA+AGG + contig473end:10932-10951 MsG0080048829.01.T01:intron 35.0%
TTAGGTCAATCTACATCAAG+TGG + contig473end:10957-10976 MsG0080048829.01.T01:CDS 35.0%
TTATGGTTTAAATGCTGCCT+TGG + contig473end:12166-12185 MsG0080048829.01.T01:CDS 35.0%
TTGTGGATATGATGATTGAG+CGG + contig473end:12090-12109 MsG0080048829.01.T01:CDS 35.0%
! AGACTTGAGTTCACTCTTTT+GGG - contig473end:11985-12004 None:intergenic 35.0%
! CAAAAAAGTGGATTCCTTCT+TGG + contig473end:11052-11071 MsG0080048829.01.T01:CDS 35.0%
! CTTAATTTTCCTCTCCAAGA+AGG - contig473end:11069-11088 None:intergenic 35.0%
! TAATGAATGGTGGAATGGTA+GGG - contig473end:10168-10187 None:intergenic 35.0%
! TTAATGAATGGTGGAATGGT+AGG - contig473end:10169-10188 None:intergenic 35.0%
!! AAAGATCACACAGAAGTACT+AGG + contig473end:12584-12603 MsG0080048829.01.T01:CDS 35.0%
!! AAGAGTATTGAGGGAGAAAA+TGG + contig473end:11317-11336 MsG0080048829.01.T01:CDS 35.0%
!! CGCATTATTCAAGAGTATTG+AGG + contig473end:11307-11326 MsG0080048829.01.T01:CDS 35.0%
!! GGAGAGATGTTGATAGTTTA+GGG + contig473end:10834-10853 MsG0080048829.01.T01:intron 35.0%
!! TGGAGAGATGTTGATAGTTT+AGG + contig473end:10833-10852 MsG0080048829.01.T01:intron 35.0%
!! TTTAGTGCTGTTTGACACTT+TGG + contig473end:13252-13271 MsG0080048829.01.T01:intron 35.0%
!!! CCTTTTTTTCAACCAATCAG+CGG + contig473end:10672-10691 MsG0080048829.01.T01:intron 35.0%
AAAGCATGATTACCGCTGAT+TGG - contig473end:10687-10706 None:intergenic 40.0%
AAATCAGGTATGCACTCTGA+TGG - contig473end:12449-12468 None:intergenic 40.0%
AAGTCACCGAAATAACCAGT+TGG + contig473end:12997-13016 MsG0080048829.01.T01:CDS 40.0%
AAGTCAGCAAAGGAAATGCT+AGG + contig473end:12533-12552 MsG0080048829.01.T01:CDS 40.0%
AATCAGCGGTAATCATGCTT+TGG + contig473end:10686-10705 MsG0080048829.01.T01:intron 40.0%
AATGACGACATTCTTCTTGC+TGG - contig473end:12236-12255 None:intergenic 40.0%
ACCAGAATACTTCCCAAATC+AGG - contig473end:12464-12483 None:intergenic 40.0%
ACGAAAACCAAGTTTCAGAG+GGG - contig473end:13634-13653 None:intergenic 40.0%
AGCAAGAAGAATGTCGTCAT+TGG + contig473end:12235-12254 MsG0080048829.01.T01:CDS 40.0%
ATAAAGACCGGGAATGAATG+GGG + contig473end:12962-12981 MsG0080048829.01.T01:CDS 40.0%
ATAGGCTGGACATTAGTTGT+CGG + contig473end:11449-11468 MsG0080048829.01.T01:intron 40.0%
ATCAAGGGAGAATTGCGAAT+TGG - contig473end:10776-10795 None:intergenic 40.0%
ATCAGAGTGCATACCTGATT+TGG + contig473end:12448-12467 MsG0080048829.01.T01:CDS 40.0%
CAATGCTTCTTTGGACAATC+GGG - contig473end:11693-11712 None:intergenic 40.0%
CATGACAAGACTTGAAAGAG+AGG + contig473end:12346-12365 MsG0080048829.01.T01:CDS 40.0%
CATTTCCAGGGATTATTGAG+AGG + contig473end:12027-12046 MsG0080048829.01.T01:CDS 40.0%
CGAAGATGAACTTTCTTCTC+TGG + contig473end:12127-12146 MsG0080048829.01.T01:CDS 40.0%
CGAGCCACAGAAAAACTAAT+TGG - contig473end:13130-13149 None:intergenic 40.0%
GAAGAATTCGGTACGTATAG+GGG + contig473end:10458-10477 MsG0080048829.01.T01:CDS 40.0%
GAGAAGAATTCGGTACGTAT+AGG + contig473end:10456-10475 MsG0080048829.01.T01:CDS 40.0%
GCAAGAAGAATGTCGTCATT+GGG + contig473end:12236-12255 MsG0080048829.01.T01:CDS 40.0%
GTGAAGCCAAGAAAAACCAT+AGG + contig473end:12372-12391 MsG0080048829.01.T01:CDS 40.0%
TAATCATGCTTTGGTACGCT+TGG + contig473end:10695-10714 MsG0080048829.01.T01:CDS 40.0%
TCAGAGTGCATACCTGATTT+GGG + contig473end:12449-12468 MsG0080048829.01.T01:CDS 40.0%
TCTCCTCCAACTGGTTATTT+CGG - contig473end:13006-13025 None:intergenic 40.0%
TCTCTTTCCAATCTATGTGC+TGG - contig473end:12803-12822 None:intergenic 40.0%
TGAACTCAAGTCTGAAGACT+TGG + contig473end:11992-12011 MsG0080048829.01.T01:CDS 40.0%
TTAAAGCTGAAGCTGAGGAA+AGG + contig473end:13418-13437 MsG0080048829.01.T01:exon 40.0%
TTGCATTAAGCTTTACCTCG+CGG - contig473end:11424-11443 None:intergenic 40.0%
TTGGAGGAGACAAATGAAGA+AGG + contig473end:13016-13035 MsG0080048829.01.T01:CDS 40.0%
! AACCTTGTCTTGTTCAAGCT+TGG - contig473end:13230-13249 None:intergenic 40.0%
! CAGACTTGAGTTCACTCTTT+TGG - contig473end:11986-12005 None:intergenic 40.0%
! CATCTTTTCTCTCTCAAGTC+TGG - contig473end:13080-13099 None:intergenic 40.0%
! CCGCTGATTGGTTGAAAAAA+AGG - contig473end:10675-10694 None:intergenic 40.0%
! CTTTTCCTCTCAATAATCCC+TGG - contig473end:12035-12054 None:intergenic 40.0%
! GTGTGATCTTTTTGACCTCT+AGG - contig473end:12575-12594 None:intergenic 40.0%
! TTGAGATCGACCTTTTCTTC+TGG + contig473end:12695-12714 MsG0080048829.01.T01:CDS 40.0%
!! ACCTGATTTGGGAAGTATTC+TGG + contig473end:12460-12479 MsG0080048829.01.T01:CDS 40.0%
!! AGAAGTACTAGGCTTAGACA+AGG + contig473end:12595-12614 MsG0080048829.01.T01:CDS 40.0%
!! CTCATTGGCTGTTCTTTTTC+TGG - contig473end:12666-12685 None:intergenic 40.0%
!! TTTTGGTTAAGCACGTGTCT+AGG + contig473end:12924-12943 MsG0080048829.01.T01:CDS 40.0%
!!! AAGGAATCCACTTTTTTGCG+CGG - contig473end:11050-11069 None:intergenic 40.0%
!!! AGATGGGTTGGAGAAGATTT+TGG + contig473end:12772-12791 MsG0080048829.01.T01:CDS 40.0%
!!! GGGTTTTGAATCGGTAAACA+AGG - contig473end:10222-10241 None:intergenic 40.0%
AAGAGGAGGAGAATCGGAAT+CGG - contig473end:10099-10118 None:intergenic 45.0%
AAGTGCAACTGAAGCTTTCG+AGG + contig473end:11632-11651 MsG0080048829.01.T01:CDS 45.0%
ACATAATTCGCGGTTCGTTC+CGG + contig473end:10403-10422 MsG0080048829.01.T01:CDS 45.0%
AGAGTGGAGAGTGAGAAACT+TGG - contig473end:10583-10602 None:intergenic 45.0%
CTCCAAGCTTGAACAAGACA+AGG + contig473end:13225-13244 MsG0080048829.01.T01:CDS 45.0%
CTGGATTAAAGCTGAAGCTG+AGG + contig473end:13413-13432 MsG0080048829.01.T01:exon 45.0%
CTTCATTTGTCTCCTCCAAC+TGG - contig473end:13015-13034 None:intergenic 45.0%
CTTGGATGGAACATCGAGAA+AGG + contig473end:12274-12293 MsG0080048829.01.T01:CDS 45.0%
CTTTCTCGATGTTCCATCCA+AGG - contig473end:12276-12295 None:intergenic 45.0%
GAGACAAATGAAGAAGGTGG+TGG + contig473end:13022-13041 MsG0080048829.01.T01:CDS 45.0%
GAGGAGACAAATGAAGAAGG+TGG + contig473end:13019-13038 MsG0080048829.01.T01:CDS 45.0%
GGAACATCGAGAAAGGATCA+AGG + contig473end:12281-12300 MsG0080048829.01.T01:CDS 45.0%
GGTAAAGCCAGCACATAGAT+TGG + contig473end:12793-12812 MsG0080048829.01.T01:CDS 45.0%
TACGCGACAGGAGAAGAATT+CGG + contig473end:10446-10465 MsG0080048829.01.T01:CDS 45.0%
TAGGGTTACCTTTCCGATCT+TGG - contig473end:10150-10169 None:intergenic 45.0%
TCACCGAAATAACCAGTTGG+AGG + contig473end:13000-13019 MsG0080048829.01.T01:CDS 45.0%
TCCTCTGTCAGATCCAAGAT+CGG + contig473end:10134-10153 MsG0080048829.01.T01:CDS 45.0%
TGAGCTTCTGCTTCATCACT+GGG - contig473end:11594-11613 None:intergenic 45.0%
TGAGGAAAGGAAGCAAGCAA+TGG + contig473end:13431-13450 MsG0080048829.01.T01:exon 45.0%
TGTCAGATCCAAGATCGGAA+AGG + contig473end:10139-10158 MsG0080048829.01.T01:CDS 45.0%
TGTGTCCGAATGTGAGAGTT+TGG + contig473end:12895-12914 MsG0080048829.01.T01:CDS 45.0%
TGTTCAAGCTTGGAGACACT+AGG - contig473end:13220-13239 None:intergenic 45.0%
TTGAGCTTCTGCTTCATCAC+TGG - contig473end:11595-11614 None:intergenic 45.0%
TTGCGCGGAAACCAGTTAAT+AGG - contig473end:11035-11054 None:intergenic 45.0%
! AAGTGGATTCCTTCTTGGAG+AGG + contig473end:11057-11076 MsG0080048829.01.T01:CDS 45.0%
! ACAAATGAAGAAGGTGGTGG+TGG + contig473end:13025-13044 MsG0080048829.01.T01:CDS 45.0%
! AGTACCGAATTCGGGTACTT+CGG - contig473end:10747-10766 None:intergenic 45.0%
! ATAGGAGAAGTTTTACGGCG+TGG - contig473end:11017-11036 None:intergenic 45.0%
! CGTATAGGGGTATACAGCTT+CGG + contig473end:10471-10490 MsG0080048829.01.T01:CDS 45.0%
! CTCAGCTTCAGCTTTAATCC+AGG - contig473end:13415-13434 None:intergenic 45.0%
!! ATACTAGCCCCTCTGAAACT+TGG + contig473end:13624-13643 MsG0080048829.01.T01:exon 45.0%
!! GAAATGCTAGGAGCATCAAG+TGG + contig473end:12545-12564 MsG0080048829.01.T01:CDS 45.0%
!! TGGTACGTGAGTACCGAATT+CGG - contig473end:10756-10775 None:intergenic 45.0%
!!! AGTTCACTCTTTTGGGACAC+TGG - contig473end:11978-11997 None:intergenic 45.0%
AAAGTTGCAGGCCTTACCAC+AGG + contig473end:12823-12842 MsG0080048829.01.T01:CDS 50.0%
AACTTCGCCCCATTCATTCC+CGG - contig473end:12972-12991 None:intergenic 50.0%
AAGGGAGAGAGAGTTGGAAG+AGG + contig473end:13159-13178 MsG0080048829.01.T01:CDS 50.0%
AAGTTGCAGGCCTTACCACA+GGG + contig473end:12824-12843 MsG0080048829.01.T01:CDS 50.0%
ACGAGGAAGAGGAGGAGAAT+CGG - contig473end:10105-10124 None:intergenic 50.0%
AGAAGCAGCACACAAGGCAA+TGG + contig473end:11347-11366 MsG0080048829.01.T01:CDS 50.0%
AGCTAGAGAAGCAGCACACA+AGG + contig473end:11341-11360 MsG0080048829.01.T01:CDS 50.0%
ATTCGGGTACTTCGGCGTAT+TGG - contig473end:10739-10758 None:intergenic 50.0%
CTCACTCAGTCCTCAACTCA+TGG + contig473end:10617-10636 MsG0080048829.01.T01:intron 50.0%
CTGGTTTCCGCGCAAAAAAG+TGG + contig473end:11040-11059 MsG0080048829.01.T01:CDS 50.0%
CTTGGAGACACTAGGCTTCA+TGG - contig473end:13212-13231 None:intergenic 50.0%
GATCTTGGATCTGACAGAGG+AGG - contig473end:10135-10154 None:intergenic 50.0%
GGTATTCTGCACTTCAGCCA+AGG - contig473end:12186-12205 None:intergenic 50.0%
TATACAGCTTCGGTACGCTC+CGG + contig473end:10481-10500 MsG0080048829.01.T01:intron 50.0%
TCCGATCTTGGATCTGACAG+AGG - contig473end:10138-10157 None:intergenic 50.0%
TCGGTGGAGTGATTCGTTGA+CGG - contig473end:10080-10099 None:intergenic 50.0%
TTGCGAAAGTCAGCCTTGGA+TGG + contig473end:12260-12279 MsG0080048829.01.T01:CDS 50.0%
TTGGATCTGACAGAGGAGGT+AGG - contig473end:10131-10150 None:intergenic 50.0%
! TACGCCGAAGTACCCGAATT+CGG + contig473end:10740-10759 MsG0080048829.01.T01:CDS 50.0%
! TGGTGGTCTGGACCAAGTTT+TGG + contig473end:13042-13061 MsG0080048829.01.T01:CDS 50.0%
!! GGTACGTGAGTACCGAATTC+GGG - contig473end:10755-10774 None:intergenic 50.0%
AATTGCGGGATTGGGCTGCT+TGG - contig473end:12207-12226 None:intergenic 55.0%
ACAGAGGAGGTAGGAGAACG+AGG - contig473end:10122-10141 None:intergenic 55.0%
ACCTCGCGGCGCGTAAAATT+CGG - contig473end:11410-11429 None:intergenic 55.0%
ACTCTCTCTCCCTTGCCTTG+CGG - contig473end:13153-13172 None:intergenic 55.0%
AGAGAGAGTTGGAAGAGGCC+TGG + contig473end:13164-13183 MsG0080048829.01.T01:CDS 55.0%
AGAGAGTTGGAAGAGGCCTG+GGG + contig473end:13166-13185 MsG0080048829.01.T01:CDS 55.0%
AGCAGCACACAAGGCAATGG+AGG + contig473end:11350-11369 MsG0080048829.01.T01:CDS 55.0%
AGGAGGAGAATCGGAATCGG+TGG - contig473end:10096-10115 None:intergenic 55.0%
CAAGGCAAGGGAGAGAGAGT+TGG + contig473end:13153-13172 MsG0080048829.01.T01:CDS 55.0%
GAGAGAGTTGGAAGAGGCCT+GGG + contig473end:13165-13184 MsG0080048829.01.T01:CDS 55.0%
GAGGTAGGAGAACGAGGAAG+AGG - contig473end:10116-10135 None:intergenic 55.0%
GCATCAAGTGGCATGCCTAG+AGG + contig473end:12557-12576 MsG0080048829.01.T01:CDS 55.0%
GGGATTGCGAAAGTCAGCCT+TGG + contig473end:12256-12275 MsG0080048829.01.T01:CDS 55.0%
GGTTAAGCACGTGTCTAGGC+TGG + contig473end:12928-12947 MsG0080048829.01.T01:CDS 55.0%
GTAGGAGAACGAGGAAGAGG+AGG - contig473end:10113-10132 None:intergenic 55.0%
TCCTAAGCTCAATCCTCCCC+AGG - contig473end:13185-13204 None:intergenic 55.0%
TGAAGCTTTCGAGGCAGCTG+AGG + contig473end:11641-11660 MsG0080048829.01.T01:CDS 55.0%
TGCTTGCTTTCTAGGCTGCC+TGG + contig473end:13394-13413 MsG0080048829.01.T01:intron 55.0%
TTCGAGGCAGCTGAGGCTAT+GGG + contig473end:11648-11667 MsG0080048829.01.T01:CDS 55.0%
TTTACAACCCGGCTTCCCTG+TGG - contig473end:12842-12861 None:intergenic 55.0%
TTTCGAGGCAGCTGAGGCTA+TGG + contig473end:11647-11666 MsG0080048829.01.T01:CDS 55.0%
! CTTTGGTACGCTTGGTTCGC+TGG + contig473end:10703-10722 MsG0080048829.01.T01:CDS 55.0%
! GGAGAAGTTTTACGGCGTGG+AGG - contig473end:11014-11033 None:intergenic 55.0%
! TCGAAGAGCTGCTTTGGTGG+AGG + contig473end:11374-11393 MsG0080048829.01.T01:CDS 55.0%
! TGAAGGGCGTGTTGCAAGCT+TGG - contig473end:11835-11854 None:intergenic 55.0%
! TTTTTCTGTGGCTCGCCGCA+AGG + contig473end:13135-13154 MsG0080048829.01.T01:CDS 55.0%
!! CTGCTTTGGTGGAGGCATCT+TGG + contig473end:11382-11401 MsG0080048829.01.T01:CDS 55.0%
!! TGAAGAAGGTGGTGGTGGTC+TGG + contig473end:13030-13049 MsG0080048829.01.T01:CDS 55.0%
AACCCGGCTTCCCTGTGGTA+AGG - contig473end:12837-12856 None:intergenic 60.0%
AGGCCTTACCACAGGGAAGC+CGG + contig473end:12831-12850 MsG0080048829.01.T01:CDS 60.0%
GCACGTGTCTAGGCTGGAGA+AGG + contig473end:12934-12953 MsG0080048829.01.T01:CDS 60.0%
GCCTGGGGAGGATTGAGCTT+AGG + contig473end:13181-13200 MsG0080048829.01.T01:CDS 60.0%
GGAGGCTCGAAGAGCTGCTT+TGG + contig473end:11368-11387 MsG0080048829.01.T01:CDS 60.0%
GTTCGTTCCGGTACGCGGTA+CGG + contig473end:10415-10434 MsG0080048829.01.T01:CDS 60.0%
TTCGTTCCGGTACGCGGTAC+GGG + contig473end:10416-10435 MsG0080048829.01.T01:CDS 60.0%
! GGCTCGAAGAGCTGCTTTGG+TGG + contig473end:11371-11390 MsG0080048829.01.T01:CDS 60.0%
GAGTTGGAAGAGGCCTGGGG+AGG + contig473end:13169-13188 MsG0080048829.01.T01:CDS 65.0%
GGCCTTACCACAGGGAAGCC+GGG + contig473end:12832-12851 MsG0080048829.01.T01:CDS 65.0%
TCGCGGTTCGTTCCGGTACG+CGG + contig473end:10410-10429 MsG0080048829.01.T01:CDS 65.0%
TGTGGCTCGCCGCAAGGCAA+GGG + contig473end:13141-13160 MsG0080048829.01.T01:CDS 65.0%
! GCCGAATTTTACGCGCCGCG+AGG + contig473end:11406-11425 MsG0080048829.01.T01:CDS 65.0%
ACGGGTTCGCGGTACGCGAC+AGG + contig473end:10434-10453 MsG0080048829.01.T01:CDS 70.0%
CGCGAACCCGTACCGCGTAC+CGG - contig473end:10425-10444 None:intergenic 70.0%
CGGTACGCGGTACGGGTTCG+CGG + contig473end:10423-10442 MsG0080048829.01.T01:CDS 70.0%
CTGTGGCTCGCCGCAAGGCA+AGG + contig473end:13140-13159 MsG0080048829.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
contig473end gene 10016 13710 10016 ID=MsG0080048829.01;
contig473end mRNA 10016 13710 10016 ID=MsG0080048829.01.T01;Parent=MsG0080048829.01
contig473end exon 10016 10160 10016 ID=MsG0080048829.01.T01.exon;Parent=MsG0080048829.01.T01
contig473end CDS 10053 10160 10053 ID=MsG0080048829.01.T01.cds;Parent=MsG0080048829.01.T01
contig473end CDS 10401 10492 10401 ID=MsG0080048829.01.T01.cds;Parent=MsG0080048829.01.T01
contig473end exon 10401 10492 10401 ID=MsG0080048829.01.T01.exon;Parent=MsG0080048829.01.T01
contig473end CDS 10692 10761 10692 ID=MsG0080048829.01.T01.cds;Parent=MsG0080048829.01.T01
contig473end exon 10692 10761 10692 ID=MsG0080048829.01.T01.exon;Parent=MsG0080048829.01.T01
contig473end CDS 10939 11097 10939 ID=MsG0080048829.01.T01.cds;Parent=MsG0080048829.01.T01
contig473end exon 10939 11097 10939 ID=MsG0080048829.01.T01.exon;Parent=MsG0080048829.01.T01
contig473end CDS 11255 11427 11255 ID=MsG0080048829.01.T01.cds;Parent=MsG0080048829.01.T01
contig473end exon 11255 11427 11255 ID=MsG0080048829.01.T01.exon;Parent=MsG0080048829.01.T01
contig473end CDS 11587 13246 11587 ID=MsG0080048829.01.T01.cds;Parent=MsG0080048829.01.T01
contig473end exon 11587 13246 11587 ID=MsG0080048829.01.T01.exon;Parent=MsG0080048829.01.T01
contig473end CDS 13408 13464 13408 ID=MsG0080048829.01.T01.cds;Parent=MsG0080048829.01.T01
contig473end exon 13408 13710 13408 ID=MsG0080048829.01.T01.exon;Parent=MsG0080048829.01.T01
Gene Sequence

>MsG0080048829.01.T01

ATGGATGAATTTGCGTGCAATTCTCCGTCAACGAATCACTCCACCGATTCCGATTCTCCTCCTCTTCCTCGTTCTCCTACCTCCTCTGTCAGATCCAAGATCGGAAAGTCACATAATTCGCGGTTCGTTCCGGTACGCGGTACGGGTTCGCGGTACGCGACAGGAGAAGAATTCGGTACGTATAGGGGTATACAGCTTCGCGGTAATCATGCTTTGGTACGCTTGGTTCGCTGGTTTGTGCGTACCAATACGCCGAAGTACCCGAATTCGAATAAATTGACGAAGGAATTAGGTCAATCTACATCAAGTGGTTTGAAAAAGTTATCGTCACAAATCAGGAAACCTCCACGCCGTAAAACTTCTCCTATTAACTGGTTTCCGCGCAAAAAAGTGGATTCCTTCTTGGAGAGGAAAATTAAGATGCTTCAGGAAGTAGATGGACTGAATTTGACGCTTGATCAGACTCTTTGTAATTCTAACCCGCATTATTCAAGAGTATTGAGGGAGAAAATGGCAGCTAGAGAAGCAGCACACAAGGCAATGGAGGCTCGAAGAGCTGCTTTGGTGGAGGCATCTTGGTGCCGAATTTTACGCGCCGCGAGGATTCCCAGTGATGAAGCAGAAGCTCAACTATTAATGGCAGATAAAAGTGCAACTGAAGCTTTCGAGGCAGCTGAGGCTATGGGTGTTATTATGTTTGACTTGCCCGATTGTCCAAAGAAGCATTGTCAAATAGAGACACCCTCTATTATTGGAGAAGAATCGTCTATGCATACATTTACTGCATTTTTTGAAACTGCCTTTGATGTAGACAAAGAAGTTGCTGCTGCAGTCAAAACTGCGTTTACCAAGCTTGCAACACGCCCTTCATTTAGTAAAGATGAATTCAAAGAACTGCTGAAAAAAATTAGTGAACACCCTGATACAGATGAAAGTCATCAGGACTTAACTGAGCTCTCTTCAGAGAATGAATCTGAGTCTGAGTTAGATCCAGTGTCCCAAAAGAGTGAACTCAAGTCTGAAGACTTGGATTCCAAGATATCATTTCCAGGGATTATTGAGAGGAAAAGTAGGAAGAGACTGTCTCTTGAAAATAGAATAAAACTTGTGGATATGATGATTGAGCGGTTAAAATGCATGCACGAAGATGAACTTTCTTCTCTGGCAACTATAGTTGCAACTTATGGTTTAAATGCTGCCTTGGCTGAAGTGCAGAATACCAAGCAGCCCAATCCCGCAATTAATTTTCCAGCAAGAAGAATGTCGTCATTGGGATTGCGAAAGTCAGCCTTGGATGGAACATCGAGAAAGGATCAAGGTCAGTCAGAATTACCTAGCCTAGATAAATTTTTAGTTAAGCACATGACAAGACTTGAAAGAGAGGTTTGTGAAGCCAAGAAAAACCATAGGAATGAAACTAAATTAGGTAAGGATAGCTCTTGTAAATCTGTTGATGGAACTCCATCAGAGTGCATACCTGATTTGGGAAGTATTCTGGTGAAGAAGAATTATTCAAAATTAGAGAAAGAGATCAATGAAGCAAAGATTAAGTCAGCAAAGGAAATGCTAGGAGCATCAAGTGGCATGCCTAGAGGTCAAAAAGATCACACAGAAGTACTAGGCTTAGACAAGGTCTTAGTGAAACATGTCTCAAGACTTGAAAAGGAAGTTCAGGAAGCCAGAAAAAGAACAGCCAATGAGAACAAAAGTTTGAGATCGACCTTTTCTTCTGGTGAAGCATTAGACACGAAAGAAAATATAAATTTGAATATGATAGAAGAAAACAAAGATGGGTTGGAGAAGATTTTGGTAAAGCCAGCACATAGATTGGAAAGAGAAAAGTTGCAGGCCTTACCACAGGGAAGCCGGGTTGTAAACTACAAACAAAGAAAGAGTCATGGAGCAACTAATGTGTCCGAATGTGAGAGTTTGGATAAAGTTTTGGTTAAGCACGTGTCTAGGCTGGAGAAGGAGAAAATAAAGACCGGGAATGAATGGGGCGAAGTTAAGAAAAGTCACCGAAATAACCAGTTGGAGGAGACAAATGAAGAAGGTGGTGGTGGTCTGGACCAAGTTTTGGTTAAACATAAATCCAGACTTGAGAGAGAAAAGATGACTGCTGCTACTCAACAGCAAGATAACCCAATTAGTTTTTCTGTGGCTCGCCGCAAGGCAAGGGAGAGAGAGTTGGAAGAGGCCTGGGGAGGATTGAGCTTAGGAAACTCCATGAAGCCTAGTGTCTCCAAGCTTGAACAAGACAAGGCTGCCTGGATTAAAGCTGAAGCTGAGGAAAGGAAGCAAGCAATGGAAGCAATATGA
Protein sequence

>MsG0080048829.01.T01

MDEFACNSPSTNHSTDSDSPPLPRSPTSSVRSKIGKSHNSRFVPVRGTGSRYATGEEFGTYRGIQLRGNHALVRLVRWFVRTNTPKYPNSNKLTKELGQSTSSGLKKLSSQIRKPPRRKTSPINWFPRKKVDSFLERKIKMLQEVDGLNLTLDQTLCNSNPHYSRVLREKMAAREAAHKAMEARRAALVEASWCRILRAARIPSDEAEAQLLMADKSATEAFEAAEAMGVIMFDLPDCPKKHCQIETPSIIGEESSMHTFTAFFETAFDVDKEVAAAVKTAFTKLATRPSFSKDEFKELLKKISEHPDTDESHQDLTELSSENESESELDPVSQKSELKSEDLDSKISFPGIIERKSRKRLSLENRIKLVDMMIERLKCMHEDELSSLATIVATYGLNAALAEVQNTKQPNPAINFPARRMSSLGLRKSALDGTSRKDQGQSELPSLDKFLVKHMTRLEREVCEAKKNHRNETKLGKDSSCKSVDGTPSECIPDLGSILVKKNYSKLEKEINEAKIKSAKEMLGASSGMPRGQKDHTEVLGLDKVLVKHVSRLEKEVQEARKRTANENKSLRSTFSSGEALDTKENINLNMIEENKDGLEKILVKPAHRLEREKLQALPQGSRVVNYKQRKSHGATNVSECESLDKVLVKHVSRLEKEKIKTGNEWGEVKKSHRNNQLEETNEEGGGGLDQVLVKHKSRLEREKMTAATQQQDNPISFSVARRKARERELEEAWGGLSLGNSMKPSVSKLEQDKAAWIKAEAEERKQAMEAI*