AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002101.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002101.01.T01 MTR_1g048950 88.889 558 38 1 22 579 1 534 0.0 991
MsG0180002101.01.T01 MTR_5g013420 38.938 565 259 11 49 578 576 1089 1.91e-113 363
MsG0180002101.01.T01 MTR_5g013420 38.938 565 259 11 49 578 576 1089 8.77e-113 362
MsG0180002101.01.T01 MTR_4g010830 38.681 561 258 12 53 578 471 980 1.25e-107 345
MsG0180002101.01.T01 MTR_4g010550 38.104 517 244 10 77 578 9 464 4.93e-98 306
MsG0180002101.01.T01 MTR_7g088370 32.847 548 293 16 55 575 203 702 5.62e-74 250
MsG0180002101.01.T01 MTR_8g042750 32.149 563 296 12 55 575 167 685 1.09e-72 246
MsG0180002101.01.T01 MTR_3g011440 32.233 515 264 13 106 577 191 663 8.73e-72 243
MsG0180002101.01.T01 MTR_6g061200 32.587 491 271 11 108 578 215 665 1.46e-69 237
MsG0180002101.01.T01 MTR_6g061270 31.034 551 290 14 77 578 185 694 2.51e-69 237
MsG0180002101.01.T01 MTR_7g084090 30.965 549 276 15 86 578 256 757 6.43e-69 237
MsG0180002101.01.T01 MTR_1g035420 31.947 529 278 14 65 552 157 644 1.53e-65 226
MsG0180002101.01.T01 MTR_8g070075 31.062 499 271 12 88 552 289 748 8.56e-64 223
MsG0180002101.01.T01 MTR_7g450730 30.900 589 256 18 18 578 40 505 2.46e-63 216
MsG0180002101.01.T01 MTR_8g070070 32.794 494 257 13 94 552 302 755 4.04e-62 219
MsG0180002101.01.T01 MTR_7g445710 30.272 588 253 18 39 578 65 543 6.05e-61 211
MsG0180002101.01.T01 MTR_8g071030 31.944 504 266 15 85 552 273 735 2.51e-60 213
MsG0180002101.01.T01 MTR_6g044690 32.298 483 238 15 109 552 130 562 1.68e-57 202
MsG0180002101.01.T01 MTR_7g445530 30.466 558 236 17 39 553 65 513 2.39e-57 201
MsG0180002101.01.T01 MTR_1g035400 31.361 507 260 17 87 552 104 563 2.08e-55 197
MsG0180002101.01.T01 MTR_7g084090 32.447 376 192 9 109 466 278 609 5.30e-51 186
MsG0180002101.01.T01 MTR_6g043960 29.814 483 229 16 109 552 69 480 7.27e-48 174
MsG0180002101.01.T01 MTR_0376s0030 28.283 495 273 14 109 568 130 577 2.44e-47 174
MsG0180002101.01.T01 MTR_2g054460 29.202 476 213 14 109 552 79 462 1.90e-43 162
MsG0180002101.01.T01 MTR_7g052480 33.010 309 159 9 311 578 255 556 3.33e-41 157
MsG0180002101.01.T01 MTR_8g078490 30.887 327 170 10 298 578 937 1253 3.33e-35 142
MsG0180002101.01.T01 MTR_5g018850 31.778 343 178 10 289 578 1168 1507 1.87e-34 140
MsG0180002101.01.T01 MTR_8g078505 32.313 294 154 9 320 573 245 533 9.71e-34 135
MsG0180002101.01.T01 MTR_7g445600 44.961 129 59 1 425 553 240 356 1.81e-32 128
MsG0180002101.01.T01 MTR_7g445600 34.225 187 99 8 39 221 61 227 4.37e-15 77.4
MsG0180002101.01.T01 MTR_4g132610 38.191 199 106 5 394 578 852 1047 2.26e-31 130
MsG0180002101.01.T01 MTR_1g080340 30.169 295 136 10 325 552 267 558 5.85e-27 115
MsG0180002101.01.T01 MTR_1g069570 30.479 292 138 10 325 552 428 718 6.05e-26 113
MsG0180002101.01.T01 MTR_7g098390 26.396 394 196 15 265 573 313 697 2.26e-21 99.0
MsG0180002101.01.T01 MTR_1g098000 37.714 175 81 7 413 574 72 231 3.05e-20 94.4
MsG0180002101.01.T01 MTR_1g098370 37.143 175 82 7 413 574 75 234 1.50e-19 92.4
MsG0180002101.01.T01 MTR_1g069570 29.600 250 112 9 325 511 428 676 5.52e-19 91.3
MsG0180002101.01.T01 MTR_6g027690 30.702 228 118 10 368 577 214 419 1.09e-18 89.4
MsG0180002101.01.T01 MTR_0071s0100 35.152 165 95 5 414 575 191 346 5.13e-16 80.5
MsG0180002101.01.T01 MTR_3g088625 32.530 166 100 4 417 577 1200 1358 5.60e-16 82.4
MsG0180002101.01.T01 MTR_3g088625 32.530 166 100 4 417 577 1306 1464 6.26e-16 82.4
MsG0180002101.01.T01 MTR_7g445810 33.333 195 105 9 54 246 94 265 6.74e-14 72.8
MsG0180002101.01.T01 MTR_6g059310 27.933 179 103 4 410 577 87 250 7.69e-14 73.6
MsG0180002101.01.T01 MTR_6g059310 28.571 175 99 4 410 573 87 246 1.06e-13 73.2
MsG0180002101.01.T01 MTR_1g012910 36.242 149 73 6 437 573 528 666 1.12e-13 74.3
MsG0180002101.01.T01 MTR_1g012910 36.242 149 73 6 437 573 365 503 1.47e-13 73.6
MsG0180002101.01.T01 MTR_1g012890 33.557 149 77 6 437 573 225 363 9.21e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002101.01.T01 AT2G35160 39.513 534 267 14 55 578 271 758 8.73e-111 348
MsG0180002101.01.T01 AT2G35160 39.513 534 267 14 55 578 307 794 2.37e-110 348
MsG0180002101.01.T01 AT2G35160 39.513 534 267 14 55 578 307 794 2.37e-110 348
MsG0180002101.01.T01 AT2G35160 39.513 534 267 14 55 578 307 794 2.37e-110 348
MsG0180002101.01.T01 AT2G35160 39.513 534 267 14 55 578 307 794 2.37e-110 348
MsG0180002101.01.T01 AT2G22740 34.804 612 292 16 24 578 229 790 4.93e-94 305
MsG0180002101.01.T01 AT2G22740 34.804 612 292 16 24 578 229 790 4.93e-94 305
MsG0180002101.01.T01 AT1G73100 33.658 514 252 14 106 577 202 668 9.00e-74 248
MsG0180002101.01.T01 AT5G04940 33.594 512 253 15 106 577 205 669 3.13e-70 239
MsG0180002101.01.T01 AT5G04940 33.594 512 253 15 106 577 205 669 3.13e-70 239
MsG0180002101.01.T01 AT2G33290 31.022 548 298 14 55 568 149 650 6.21e-64 221
MsG0180002101.01.T01 AT2G33290 31.022 548 298 14 55 568 149 650 6.21e-64 221
MsG0180002101.01.T01 AT2G33290 31.022 548 298 14 55 568 149 650 6.21e-64 221
MsG0180002101.01.T01 AT2G33290 31.022 548 298 14 55 568 149 650 6.21e-64 221
MsG0180002101.01.T01 AT5G13960 32.370 519 262 19 109 578 12 490 9.39e-64 217
MsG0180002101.01.T01 AT5G13960 31.874 571 290 22 57 578 104 624 3.77e-63 219
MsG0180002101.01.T01 AT4G13460 30.410 536 291 15 55 552 145 636 4.74e-60 211
MsG0180002101.01.T01 AT4G13460 30.410 536 291 15 55 552 145 636 4.74e-60 211
MsG0180002101.01.T01 AT1G17770 29.502 522 268 18 106 577 221 692 2.54e-54 196
MsG0180002101.01.T01 AT2G24740 29.961 514 255 17 106 577 304 754 6.53e-51 187
MsG0180002101.01.T01 AT2G23740 33.758 314 162 10 301 575 1066 1372 1.56e-35 143
MsG0180002101.01.T01 AT2G23740 33.758 314 162 10 301 575 1073 1379 1.67e-35 143
MsG0180002101.01.T01 AT2G23740 33.758 314 162 10 301 575 1073 1379 1.67e-35 143
MsG0180002101.01.T01 AT2G23740 33.758 314 162 10 301 575 1073 1379 1.67e-35 143
MsG0180002101.01.T01 AT5G47150 38.889 216 121 4 55 268 118 324 2.96e-30 121
MsG0180002101.01.T01 AT5G47160 35.833 240 134 4 31 264 182 407 1.81e-27 115
MsG0180002101.01.T01 AT5G47160 35.833 240 134 4 31 264 182 407 1.81e-27 115
MsG0180002101.01.T01 AT5G47160 35.833 240 134 4 31 264 182 407 1.81e-27 115
MsG0180002101.01.T01 AT3G04380 26.620 432 211 18 222 573 36 441 2.80e-25 109
MsG0180002101.01.T01 AT3G04380 26.620 432 211 18 222 573 52 457 3.05e-25 109
MsG0180002101.01.T01 AT3G04380 26.620 432 211 18 222 573 52 457 3.82e-25 109
MsG0180002101.01.T01 AT3G04380 28.358 335 167 12 308 573 84 414 1.78e-24 107
MsG0180002101.01.T01 AT3G04380 28.358 335 167 12 308 573 100 430 1.89e-24 107
MsG0180002101.01.T01 AT3G04380 28.358 335 167 12 308 573 100 430 2.18e-24 107
MsG0180002101.01.T01 AT2G23740 32.932 249 122 9 301 511 1073 1314 1.09e-23 106
MsG0180002101.01.T01 AT2G23740 32.932 249 122 9 301 511 1073 1314 1.09e-23 106
MsG0180002101.01.T01 AT1G04050 35.135 185 106 5 406 576 537 721 1.30e-21 99.8
MsG0180002101.01.T01 AT1G04050 35.135 185 106 5 406 576 537 721 1.30e-21 99.8
MsG0180002101.01.T01 AT1G04050 35.135 185 106 5 406 576 433 617 1.32e-21 99.4
MsG0180002101.01.T01 AT3G03750 32.301 226 114 9 371 577 144 349 2.22e-20 93.6
MsG0180002101.01.T01 AT5G43990 29.553 291 143 12 322 552 393 681 2.94e-20 95.5
MsG0180002101.01.T01 AT5G43990 29.553 291 143 12 322 552 393 681 2.94e-20 95.5
MsG0180002101.01.T01 AT5G43990 29.553 291 143 12 322 552 370 658 2.95e-20 95.5
MsG0180002101.01.T01 AT5G43990 29.553 291 143 12 322 552 370 658 2.95e-20 95.5
MsG0180002101.01.T01 AT5G43990 29.553 291 143 12 322 552 370 658 2.95e-20 95.5
MsG0180002101.01.T01 AT5G43990 29.553 291 143 12 322 552 370 658 2.95e-20 95.5
MsG0180002101.01.T01 AT5G43990 29.553 291 143 12 322 552 413 701 3.33e-20 95.5
MsG0180002101.01.T01 AT5G43990 29.553 291 143 12 322 552 413 701 3.33e-20 95.5
MsG0180002101.01.T01 AT5G43990 29.553 291 143 12 322 552 390 678 3.47e-20 95.1
MsG0180002101.01.T01 AT5G43990 29.553 291 143 12 322 552 390 678 3.47e-20 95.1
MsG0180002101.01.T01 AT5G43990 29.553 291 143 12 322 552 390 678 3.47e-20 95.1
MsG0180002101.01.T01 AT5G43990 29.553 291 143 12 322 552 390 678 3.47e-20 95.1
MsG0180002101.01.T01 AT5G43990 29.553 291 143 12 322 552 301 589 4.02e-20 94.7
MsG0180002101.01.T01 AT5G43990 29.553 291 143 12 322 552 321 609 4.46e-20 94.7
MsG0180002101.01.T01 AT5G43990 29.553 291 143 12 322 552 321 609 4.46e-20 94.7
MsG0180002101.01.T01 AT5G43990 29.553 291 143 12 322 552 321 609 4.46e-20 94.7
MsG0180002101.01.T01 AT5G43990 29.553 291 143 12 322 552 321 609 4.46e-20 94.7
MsG0180002101.01.T01 AT1G77300 30.488 164 106 3 417 577 1008 1166 9.49e-16 81.6
MsG0180002101.01.T01 AT1G77300 30.488 164 106 3 417 577 1008 1166 1.02e-15 81.6
MsG0180002101.01.T01 AT4G30860 29.630 243 125 9 342 577 261 464 1.74e-15 79.7
MsG0180002101.01.T01 AT1G76710 33.529 170 97 6 413 575 66 226 3.10e-15 79.0
MsG0180002101.01.T01 AT1G76710 33.529 170 97 6 413 575 66 226 3.10e-15 79.0
MsG0180002101.01.T01 AT1G76710 33.529 170 97 6 413 575 66 226 3.14e-15 79.0
MsG0180002101.01.T01 AT1G76710 33.529 170 97 6 413 575 66 226 3.25e-15 79.0
MsG0180002101.01.T01 AT3G03750 32.461 191 92 8 371 552 144 306 3.29e-15 77.8
MsG0180002101.01.T01 AT5G42400 29.730 148 88 4 436 577 1250 1387 2.86e-11 67.4
MsG0180002101.01.T01 AT5G42400 29.730 148 88 4 436 577 1250 1387 2.86e-11 67.4
MsG0180002101.01.T01 AT5G42400 29.730 148 88 4 436 577 1250 1387 2.86e-11 67.4
MsG0180002101.01.T01 AT5G42400 29.730 148 88 4 436 577 1250 1387 2.86e-11 67.4
MsG0180002101.01.T01 AT5G42400 29.730 148 88 4 436 577 1250 1387 2.86e-11 67.4
MsG0180002101.01.T01 AT5G42400 29.730 148 88 4 436 577 1250 1387 2.86e-11 67.4
MsG0180002101.01.T01 AT5G42400 29.730 148 88 4 436 577 1250 1387 2.86e-11 67.4
MsG0180002101.01.T01 AT5G42400 29.730 148 88 4 436 577 1250 1387 2.86e-11 67.4
MsG0180002101.01.T01 AT3G59960 31.737 167 92 4 420 577 96 249 3.45e-11 64.7
MsG0180002101.01.T01 AT3G59960 31.737 167 92 4 420 577 96 249 3.45e-11 64.7
MsG0180002101.01.T01 AT3G59960 31.737 167 92 4 420 577 96 249 3.45e-11 64.7
MsG0180002101.01.T01 AT3G59960 31.737 167 92 4 420 577 96 249 7.78e-11 64.3

Find 137 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATGTGGTATTGATTATT+TGG 0.059117 1:-32904361 MsG0180002101.01.T01:CDS
TGATGACTATATAATTAATA+TGG 0.212544 1:-32903329 MsG0180002101.01.T01:CDS
ATGCAAAGTTCAAAATCTTT+TGG 0.219974 1:-32904711 MsG0180002101.01.T01:CDS
TAAAATTGAAAGCAAAATTA+AGG 0.224504 1:-32904530 MsG0180002101.01.T01:CDS
GCGACACCGTCCCTTATATT+AGG 0.242119 1:+32904234 None:intergenic
CTTCAGAATTGTGTCTCTTC+TGG 0.280628 1:+32903932 None:intergenic
GGTATCTCCACATAGCTTAT+AGG 0.280802 1:+32903751 None:intergenic
AGGGCGGAACTTATTGTAAT+TGG 0.288133 1:-32904399 MsG0180002101.01.T01:CDS
TCCTGTTAGGGTTATATTGC+AGG 0.288637 1:-32904148 MsG0180002101.01.T01:CDS
TTTATAGCCTGTTATGGGCT+TGG 0.294403 1:-32906871 None:intergenic
GGGCTTGGGCTTTGGTTGCT+TGG 0.303217 1:-32906856 MsG0180002101.01.T01:CDS
CCTGTTATGGGCTTGGGCTT+TGG 0.303870 1:-32906864 None:intergenic
GTTTGTGCTTAAGAAAATTC+AGG 0.305686 1:-32903998 MsG0180002101.01.T01:CDS
GTTCCGCCCTATATTGAAAT+TGG 0.307938 1:+32904412 None:intergenic
AGTATTGAACGATTCGTCTT+TGG 0.310118 1:+32903694 None:intergenic
CACAAATACCCCTGTTGCTT+GGG 0.312853 1:+32906831 None:intergenic
TGTTCGAATCAATGATATTT+CGG 0.328396 1:-32903809 MsG0180002101.01.T01:CDS
TTATAGCCTGTTATGGGCTT+GGG 0.328682 1:-32906870 None:intergenic
TTGCTTGGTTCCCAAGCAAC+AGG 0.328949 1:-32906841 MsG0180002101.01.T01:CDS
TGTTTCCCCTCGAGATGTTA+TGG 0.333335 1:-32903962 MsG0180002101.01.T01:CDS
ACTAGGTAACCAAAGGGTTT+AGG 0.334097 1:+32903730 None:intergenic
GTATTGATTATTTGGGTAAA+GGG 0.337355 1:-32904353 MsG0180002101.01.T01:CDS
CGCGCCTCATGATCAGAAAT+TGG 0.347176 1:-32904214 MsG0180002101.01.T01:CDS
ACTCGAGTAAGAGGACAATT+TGG 0.352436 1:-32904036 MsG0180002101.01.T01:CDS
AATTTGCTTCTGTGGTTCAT+TGG 0.353010 1:-32902988 MsG0180002101.01.T01:CDS
TGGTGACCAATTTCAATATA+GGG 0.354159 1:-32904418 MsG0180002101.01.T01:CDS
ATGGACAAATTTACATTTGA+AGG 0.363450 1:-32902959 None:intergenic
CGCGCGGAAATCTTGCTTTG+TGG 0.366478 1:-32904191 MsG0180002101.01.T01:CDS
ATGGTGGTAACCCTAATATA+AGG 0.370183 1:-32904245 MsG0180002101.01.T01:CDS
ATAGGTGTCACCACCCGAAT+AGG 0.370547 1:+32903769 None:intergenic
GAAAGCAAAATTAAGGGCTT+TGG 0.378893 1:-32904523 MsG0180002101.01.T01:CDS
ACCTGCAATATAACCCTAAC+AGG 0.380684 1:+32904147 None:intergenic
GGGTAAAGGGGAGGGTTCTT+TGG 0.380696 1:-32904340 MsG0180002101.01.T01:CDS
TCTGGTTGTTTGCTTTATGA+AGG 0.381509 1:-32904270 MsG0180002101.01.T01:CDS
TGAATGCGGGGAGTCCTGTT+AGG 0.386175 1:-32904161 MsG0180002101.01.T01:CDS
GCAAAGAAAAGTTCCCTATT+CGG 0.386328 1:-32903783 MsG0180002101.01.T01:CDS
TCATGTGGTATTGATTATTT+GGG 0.386491 1:-32904360 MsG0180002101.01.T01:CDS
CGACACCGTCCCTTATATTA+GGG 0.395566 1:+32904235 None:intergenic
TTGGTGACCAATTTCAATAT+AGG 0.400987 1:-32904419 MsG0180002101.01.T01:CDS
TCTTATTCATACATATATGA+TGG 0.403540 1:-32904081 MsG0180002101.01.T01:CDS
CAAAGAAAAGTTCCCTATTC+GGG 0.406699 1:-32903782 MsG0180002101.01.T01:CDS
GTTTCCCCTCGAGATGTTAT+GGG 0.409974 1:-32903961 MsG0180002101.01.T01:CDS
TTTCATAAACCTTGTAGCTT+CGG 0.411040 1:+32904500 None:intergenic
GCGAATGTTATGAAGTCTTC+TGG 0.411419 1:-32904288 MsG0180002101.01.T01:CDS
AAAATTGAAAGCAAAATTAA+GGG 0.414139 1:-32904529 MsG0180002101.01.T01:CDS
ACACAAATACCCCTGTTGCT+TGG 0.426912 1:+32906830 None:intergenic
AAGACGAATCGTTCAATACT+AGG 0.431282 1:-32903691 MsG0180002101.01.T01:CDS
ACATCTTTCACAACTAGGTT+AGG 0.431941 1:+32903137 None:intergenic
GGTATTGATTATTTGGGTAA+AGG 0.432188 1:-32904354 MsG0180002101.01.T01:CDS
TTGAGTAAAATTTGCTTCTG+TGG 0.439926 1:-32902996 MsG0180002101.01.T01:CDS
CAAAATGTTGTTTGCTACAA+AGG 0.440548 1:-32903081 MsG0180002101.01.T01:CDS
GAAAACACTGGAAAGAGAAT+AGG 0.441533 1:-32904462 MsG0180002101.01.T01:CDS
GAGCTCACACACAAAGCTTC+CGG 0.447492 1:+32903405 None:intergenic
AAAACACTGGAAAGAGAATA+GGG 0.453518 1:-32904461 MsG0180002101.01.T01:CDS
AAGAGAATAGGGCATGTAGA+TGG 0.462267 1:-32904450 MsG0180002101.01.T01:CDS
GTGGAGATACCTAAACCCTT+TGG 0.465917 1:-32903739 MsG0180002101.01.T01:CDS
GATTATTTGGGTAAAGGGGA+GGG 0.470006 1:-32904348 MsG0180002101.01.T01:CDS
ATCAACCGAGTGAGTCAATC+TGG 0.477416 1:-32903502 MsG0180002101.01.T01:CDS
GACAATGTGACTCGAGTAAG+AGG 0.478502 1:-32904045 MsG0180002101.01.T01:CDS
TTATGAAAGCGAAACGTCAA+TGG 0.484134 1:-32904485 MsG0180002101.01.T01:CDS
GATGACTATATAATTAATAT+GGG 0.486512 1:-32903328 MsG0180002101.01.T01:intron
TAGGTGTCACCACCCGAATA+GGG 0.488457 1:+32903770 None:intergenic
TACCACATGAGTGTTGTTGA+TGG 0.495002 1:+32904373 None:intergenic
TAAGAAAATTCAGGACCAAC+CGG 0.497017 1:-32903989 MsG0180002101.01.T01:CDS
CTTATTCATACATATATGAT+GGG 0.498680 1:-32904080 MsG0180002101.01.T01:CDS
ACATAACATCTTTCACAACT+AGG 0.499786 1:+32903132 None:intergenic
ATTGATTCGAACAACATCCT+TGG 0.502629 1:+32903819 None:intergenic
AGCTTTGTGTGTGAGCTCAT+TGG 0.503294 1:-32903400 MsG0180002101.01.T01:CDS
GGGCTTTGGCCGAAGCTACA+AGG 0.511522 1:-32904509 MsG0180002101.01.T01:CDS
ATGAAGAACACAAGCAAGAA+GGG 0.514647 1:+32903530 None:intergenic
ATCTTCAAAACAAAATTGAA+AGG 0.515011 1:-32903460 MsG0180002101.01.T01:CDS
CAAAACAAAATTGAAAGGGT+GGG 0.521314 1:-32903455 MsG0180002101.01.T01:CDS
TTGGGAGAAAGCGTGAAGAA+TGG 0.523029 1:-32904692 MsG0180002101.01.T01:CDS
GCAACTAGACATGGAAACAT+TGG 0.525331 1:-32903185 MsG0180002101.01.T01:CDS
ACACGCTCTTTCATTCCATC+CGG 0.526296 1:-32903424 MsG0180002101.01.T01:CDS
TGGTGGTAACCCTAATATAA+GGG 0.526528 1:-32904244 MsG0180002101.01.T01:CDS
TCAAAACAAAATTGAAAGGG+TGG 0.528168 1:-32903456 MsG0180002101.01.T01:CDS
TGATTATTTGGGTAAAGGGG+AGG 0.530479 1:-32904349 MsG0180002101.01.T01:CDS
AAACATTCTTTGGGAGAACA+TGG 0.531170 1:+32903908 None:intergenic
CATGTAGATGGAATTGAAGT+TGG 0.532327 1:-32904438 MsG0180002101.01.T01:CDS
GATGAAGAACACAAGCAAGA+AGG 0.541031 1:+32903529 None:intergenic
GAATGCGGGGAGTCCTGTTA+GGG 0.541817 1:-32904160 MsG0180002101.01.T01:CDS
TCTTCAAAACAAAATTGAAA+GGG 0.541871 1:-32903459 MsG0180002101.01.T01:CDS
TTGCTGTAAGGTGAATATCA+AGG 0.545402 1:-32903021 MsG0180002101.01.T01:CDS
AAAACAAAATTGAAAGGGTG+GGG 0.546151 1:-32903454 MsG0180002101.01.T01:CDS
CGCGCCAATTTCTGATCATG+AGG 0.548143 1:+32904210 None:intergenic
TATTGATTATTTGGGTAAAG+GGG 0.549643 1:-32904352 MsG0180002101.01.T01:CDS
TATGAAAGCGAAACGTCAAT+GGG 0.549766 1:-32904484 MsG0180002101.01.T01:CDS
TAACTCAGCTCTCTACCTGC+AGG 0.558275 1:+32903053 None:intergenic
TAGAGGTCTTGTTCTCTCCA+AGG 0.558562 1:-32903836 MsG0180002101.01.T01:CDS
TCTATGAGTTACAACAATGC+TGG 0.561265 1:+32904314 None:intergenic
CATATTGACTAGGTAACCAA+AGG 0.567300 1:+32903723 None:intergenic
TATATAACGGATGATTTCAG+AGG 0.567575 1:+32903562 None:intergenic
TTATCTTGTCAGAAGATGAA+AGG 0.571853 1:+32904655 None:intergenic
GGTGGGGCATTAGCCTATGA+TGG 0.574925 1:-32903604 MsG0180002101.01.T01:CDS
TGTTTGCTTTATGAAGGTCA+TGG 0.576682 1:-32904264 MsG0180002101.01.T01:CDS
TTGGTTTCCATAACATCTCG+AGG 0.577098 1:+32903883 None:intergenic
CGAATCAATGATATTTCGGA+GGG 0.577253 1:-32903805 MsG0180002101.01.T01:CDS
TGTGGTTCATTGGAATGCAA+TGG 0.579644 1:-32902978 MsG0180002101.01.T01:CDS
CAGAAGAGACACAATTCTGA+AGG 0.581158 1:-32903931 MsG0180002101.01.T01:CDS
AGGGCCACACTCATATATAA+CGG 0.584525 1:+32903549 None:intergenic
TGCTTGGTTCCCAAGCAACA+GGG 0.584634 1:-32906840 MsG0180002101.01.T01:CDS
TTATGATTACAATTGCTGTA+AGG 0.588141 1:-32903033 MsG0180002101.01.T01:CDS
AATCGTTCAATACTAGGTGG+TGG 0.591568 1:-32903685 MsG0180002101.01.T01:CDS
TTGTGGAATAGTATGAATGC+GGG 0.595742 1:-32904174 MsG0180002101.01.T01:CDS
ATATTGACTAGGTAACCAAA+GGG 0.596787 1:+32903724 None:intergenic
ATATAACGGATGATTTCAGA+GGG 0.600456 1:+32903563 None:intergenic
CTAGACATGGAAACATTGGA+AGG 0.602878 1:-32903181 MsG0180002101.01.T01:CDS
TGCATTGATGCAACTAGACA+TGG 0.604656 1:-32903194 MsG0180002101.01.T01:CDS
TTTGCATAGCTAAGAATGGT+GGG 0.609720 1:-32903621 MsG0180002101.01.T01:CDS
TCTCGAGGGGAAACACTAGC+CGG 0.615076 1:+32903970 None:intergenic
TGTGTTTGCATAGCTAAGAA+TGG 0.620233 1:-32903625 MsG0180002101.01.T01:CDS
TTGGATAAGTCATATTGACT+AGG 0.621126 1:+32903713 None:intergenic
AAAGTTCCCATAACATCTCG+AGG 0.623289 1:+32903955 None:intergenic
TCGAATCAATGATATTTCGG+AGG 0.627900 1:-32903806 MsG0180002101.01.T01:CDS
AAACGTCAATGGGAAAACAC+TGG 0.631564 1:-32904474 MsG0180002101.01.T01:CDS
GAGGGGAAACACTAGCCGGT+TGG 0.631704 1:+32903974 None:intergenic
GCTACAAAGGACATACCTGC+AGG 0.633949 1:-32903068 MsG0180002101.01.T01:CDS
AAGTTCCCATAACATCTCGA+GGG 0.638178 1:+32903956 None:intergenic
GGTGACACCTATAAGCTATG+TGG 0.646281 1:-32903758 MsG0180002101.01.T01:CDS
GCTTGGTTCCCAAGCAACAG+GGG 0.647833 1:-32906839 MsG0180002101.01.T01:intron
CTCCATCAACAACACTCATG+TGG 0.662631 1:-32904375 MsG0180002101.01.T01:CDS
GGTAACCCTAATATAAGGGA+CGG 0.664705 1:-32904240 MsG0180002101.01.T01:CDS
TCATCCGTTATATATGAGTG+TGG 0.671397 1:-32903553 MsG0180002101.01.T01:CDS
AGTTCCCATAACATCTCGAG+GGG 0.674068 1:+32903957 None:intergenic
TCACACACAAAGCTTCCGGA+TGG 0.681981 1:+32903409 None:intergenic
AGAAAAGTTCCCTATTCGGG+TGG 0.682829 1:-32903779 MsG0180002101.01.T01:CDS
TGACCAATTTCAATATAGGG+CGG 0.686980 1:-32904415 MsG0180002101.01.T01:CDS
TGTGGAATAGTATGAATGCG+GGG 0.700340 1:-32904173 MsG0180002101.01.T01:CDS
CATGATCAGAAATTGGCGCG+CGG 0.700635 1:-32904207 MsG0180002101.01.T01:CDS
TTTGTGGAATAGTATGAATG+CGG 0.704358 1:-32904175 MsG0180002101.01.T01:CDS
TTGCTTTATGAAGGTCATGG+TGG 0.708605 1:-32904261 MsG0180002101.01.T01:CDS
GAATACCAGATTGACTCACT+CGG 0.714476 1:+32903497 None:intergenic
GTTTGCATAGCTAAGAATGG+TGG 0.719383 1:-32903622 MsG0180002101.01.T01:CDS
TTGCATAGCTAAGAATGGTG+GGG 0.720544 1:-32903620 MsG0180002101.01.T01:CDS
ACGAATCGTTCAATACTAGG+TGG 0.736474 1:-32903688 MsG0180002101.01.T01:CDS
TATAACGGATGATTTCAGAG+GGG 0.813910 1:+32903564 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAAATAAACAAATCAT+GGG + Chr1:32903648-32903667 None:intergenic 10.0%
!! TTAATTAATACTATAAATCA+TGG + Chr1:32905036-32905055 None:intergenic 10.0%
!!! ATATCAATACTTTTTTTTTA+GGG + Chr1:32903276-32903295 None:intergenic 10.0%
!!! GATTTTTATTTGATTTTAAA+AGG + Chr1:32903971-32903990 None:intergenic 10.0%
!!! TATATCAATACTTTTTTTTT+AGG + Chr1:32903277-32903296 None:intergenic 10.0%
!!! TCTTTTTTTTAAAAAAAGAT+GGG + Chr1:32904037-32904056 None:intergenic 10.0%
!!! TTCTTTTTTTTAAAAAAAGA+TGG + Chr1:32904038-32904057 None:intergenic 10.0%
!! AAAATTGAAAGCAAAATTAA+GGG - Chr1:32905291-32905310 MsG0180002101.01.T01:intron 15.0%
!! AACATAAAAACTAAAACTTT+AGG + Chr1:32904567-32904586 None:intergenic 15.0%
!! AATAAAAATTGAAACTTTCT+TGG - Chr1:32904993-32905012 MsG0180002101.01.T01:intron 15.0%
!! ATAAAAATTGAAACTTTCTT+GGG - Chr1:32904994-32905013 MsG0180002101.01.T01:intron 15.0%
!! CATTACTCTTTATATATATA+GGG + Chr1:32904087-32904106 None:intergenic 15.0%
!! GAATATAAATAAACAAATCA+TGG + Chr1:32903649-32903668 None:intergenic 15.0%
!! GATGACTATATAATTAATAT+GGG - Chr1:32906492-32906511 MsG0180002101.01.T01:intron 15.0%
!! TAAAATTGAAAGCAAAATTA+AGG - Chr1:32905290-32905309 MsG0180002101.01.T01:intron 15.0%
!! TCATTACTCTTTATATATAT+AGG + Chr1:32904088-32904107 None:intergenic 15.0%
!! TGATGACTATATAATTAATA+TGG - Chr1:32906491-32906510 MsG0180002101.01.T01:intron 15.0%
!! TTATTATTATCCAATAAGAA+TGG + Chr1:32904160-32904179 None:intergenic 15.0%
!!! ATAAAGCATTAACAATTTTT+AGG - Chr1:32905221-32905240 MsG0180002101.01.T01:intron 15.0%
!!! CTTTTTTTTAAAAAAAGATG+GGG + Chr1:32904036-32904055 None:intergenic 15.0%
!!! TAAAGCATTAACAATTTTTA+GGG - Chr1:32905222-32905241 MsG0180002101.01.T01:intron 15.0%
!! ATAATAATAGAGAGAGAAAA+AGG - Chr1:32904173-32904192 MsG0180002101.01.T01:CDS 20.0%
!! ATATCTTCTATCGTATAATA+TGG - Chr1:32903769-32903788 MsG0180002101.01.T01:CDS 20.0%
!! ATCTTCAAAACAAAATTGAA+AGG - Chr1:32906360-32906379 MsG0180002101.01.T01:intron 20.0%
!! CCAATCATTTATCATTATTA+TGG + Chr1:32904946-32904965 None:intergenic 20.0%
!! CCATAATAATGATAAATGAT+TGG - Chr1:32904943-32904962 MsG0180002101.01.T01:intron 20.0%
!! CTTATTCATACATATATGAT+GGG - Chr1:32905740-32905759 MsG0180002101.01.T01:intron 20.0%
!! TATCTTCTATCGTATAATAT+GGG - Chr1:32903770-32903789 MsG0180002101.01.T01:CDS 20.0%
!! TCTTATTCATACATATATGA+TGG - Chr1:32905739-32905758 MsG0180002101.01.T01:intron 20.0%
!! TCTTCAAAACAAAATTGAAA+GGG - Chr1:32906361-32906380 MsG0180002101.01.T01:intron 20.0%
!! TTAAGTTTATCACAATTCTT+TGG - Chr1:32903917-32903936 MsG0180002101.01.T01:CDS 20.0%
!!! AATTTTGCTTTCAATTTTAC+AGG + Chr1:32905289-32905308 None:intergenic 20.0%
!!! ATCGTAAAAACTAAAACTTT+TGG + Chr1:32904739-32904758 None:intergenic 20.0%
!!! ATGAATTTTTTTGCTAGTAT+AGG - Chr1:32903495-32903514 MsG0180002101.01.T01:CDS 20.0%
!!! ATTAATATGGGTAATGTTTT+TGG - Chr1:32906504-32906523 MsG0180002101.01.T01:intron 20.0%
! AAAAATCACATTCACAAAAG+GGG + Chr1:32904783-32904802 None:intergenic 25.0%
! AGAGTATATAGTTTCCATAT+TGG + Chr1:32903208-32903227 None:intergenic 25.0%
! ATTATGGTGAAACAAGAAAA+GGG + Chr1:32904930-32904949 None:intergenic 25.0%
! CAAAAATCACATTCACAAAA+GGG + Chr1:32904784-32904803 None:intergenic 25.0%
! CCTAAAAAGTTGTTGAAAAT+TGG + Chr1:32904122-32904141 None:intergenic 25.0%
! TATTACTCCATGAAAATGTT+TGG - Chr1:32904466-32904485 MsG0180002101.01.T01:CDS 25.0%
! TATTATGGTGAAACAAGAAA+AGG + Chr1:32904931-32904950 None:intergenic 25.0%
! TCAAAAATCACATTCACAAA+AGG + Chr1:32904785-32904804 None:intergenic 25.0%
! TGTTCGAATCAATGATATTT+CGG - Chr1:32906011-32906030 MsG0180002101.01.T01:intron 25.0%
! TTATGATTACAATTGCTGTA+AGG - Chr1:32906787-32906806 MsG0180002101.01.T01:intron 25.0%
! TTATTATCCAATAAGAATGG+AGG + Chr1:32904157-32904176 None:intergenic 25.0%
!! ACTATGCATATTTTCACAAA+AGG + Chr1:32904613-32904632 None:intergenic 25.0%
!! ATGCAAAGTTCAAAATCTTT+TGG - Chr1:32905109-32905128 MsG0180002101.01.T01:intron 25.0%
!! CCAATTTTCAACAACTTTTT+AGG - Chr1:32904119-32904138 MsG0180002101.01.T01:CDS 25.0%
!! CTATGCATATTTTCACAAAA+GGG + Chr1:32904612-32904631 None:intergenic 25.0%
!! TATTGATTATTTGGGTAAAG+GGG - Chr1:32905468-32905487 MsG0180002101.01.T01:intron 25.0%
!! TGCAAAGTTCAAAATCTTTT+GGG - Chr1:32905110-32905129 MsG0180002101.01.T01:intron 25.0%
!! TTCTTTTCTTTTCTTTTTGC+AGG - Chr1:32905065-32905084 MsG0180002101.01.T01:intron 25.0%
!!! AAGTTTTTTGTTACCATCAT+AGG + Chr1:32906232-32906251 None:intergenic 25.0%
!!! GTATTGATTATTTGGGTAAA+GGG - Chr1:32905467-32905486 MsG0180002101.01.T01:intron 25.0%
!!! TCATGTGGTATTGATTATTT+GGG - Chr1:32905460-32905479 MsG0180002101.01.T01:intron 25.0%
!!! TTGTTTTGAAGATTTCAAGT+TGG + Chr1:32906353-32906372 None:intergenic 25.0%
AAAACAAAATTGAAAGGGTG+GGG - Chr1:32906366-32906385 MsG0180002101.01.T01:intron 30.0%
AAAACACTGGAAAGAGAATA+GGG - Chr1:32905359-32905378 MsG0180002101.01.T01:intron 30.0%
AATAGAGAGAGAAAAAGGAA+GGG - Chr1:32904178-32904197 MsG0180002101.01.T01:CDS 30.0%
ACATAACATCTTTCACAACT+AGG + Chr1:32906691-32906710 None:intergenic 30.0%
ATAAACTTAGTGAGAAGAAG+AGG + Chr1:32904429-32904448 None:intergenic 30.0%
CAAAACAAAATTGAAAGGGT+GGG - Chr1:32906365-32906384 MsG0180002101.01.T01:intron 30.0%
CTAAGTTTATGCATAGTTTC+TGG - Chr1:32904439-32904458 MsG0180002101.01.T01:CDS 30.0%
GTTTGTGCTTAAGAAAATTC+AGG - Chr1:32905822-32905841 MsG0180002101.01.T01:intron 30.0%
TAATAGAGAGAGAAAAAGGA+AGG - Chr1:32904177-32904196 MsG0180002101.01.T01:CDS 30.0%
TCAAAACAAAATTGAAAGGG+TGG - Chr1:32906364-32906383 MsG0180002101.01.T01:intron 30.0%
TGGTGACCAATTTCAATATA+GGG - Chr1:32905402-32905421 MsG0180002101.01.T01:intron 30.0%
TTATCTTGTCAGAAGATGAA+AGG + Chr1:32905168-32905187 None:intergenic 30.0%
TTATGGTGAAACAAGAAAAG+GGG + Chr1:32904929-32904948 None:intergenic 30.0%
TTTCATAAACCTTGTAGCTT+CGG + Chr1:32905323-32905342 None:intergenic 30.0%
TTTGTGGAATAGTATGAATG+CGG - Chr1:32905645-32905664 MsG0180002101.01.T01:intron 30.0%
! ATATTGACTAGGTAACCAAA+GGG + Chr1:32906099-32906118 None:intergenic 30.0%
! CAAAATGTTGTTTGCTACAA+AGG - Chr1:32906739-32906758 MsG0180002101.01.T01:intron 30.0%
! CTCTAGACATTTGTCTTTTT+CGG + Chr1:32905969-32905988 None:intergenic 30.0%
! GAAAGAACCAAACATTTTCA+TGG + Chr1:32904476-32904495 None:intergenic 30.0%
! TGATGTTGTATGCATTTTGT+AGG - Chr1:32906587-32906606 MsG0180002101.01.T01:intron 30.0%
! TGTAGCAAACAACATTTTGT+GGG + Chr1:32906738-32906757 None:intergenic 30.0%
! TTCTGAAAAATCTGAAGTGA+TGG - Chr1:32905696-32905715 MsG0180002101.01.T01:intron 30.0%
! TTGAGTAAAATTTGCTTCTG+TGG - Chr1:32906824-32906843 MsG0180002101.01.T01:intron 30.0%
! TTGCTTTCAATTTTACAGGT+TGG + Chr1:32905285-32905304 None:intergenic 30.0%
! TTGGATAAGTCATATTGACT+AGG + Chr1:32906110-32906129 None:intergenic 30.0%
! TTGGTGACCAATTTCAATAT+AGG - Chr1:32905401-32905420 MsG0180002101.01.T01:intron 30.0%
! TTGTAGCAAACAACATTTTG+TGG + Chr1:32906739-32906758 None:intergenic 30.0%
!! ATATAACGGATGATTTCAGA+GGG + Chr1:32906260-32906279 None:intergenic 30.0%
!! CTCATGTGGTATTGATTATT+TGG - Chr1:32905459-32905478 MsG0180002101.01.T01:intron 30.0%
!! GAGTAGTTTTTCTGTCATTT+TGG - Chr1:32904340-32904359 MsG0180002101.01.T01:CDS 30.0%
!! GGTATTGATTATTTGGGTAA+AGG - Chr1:32905466-32905485 MsG0180002101.01.T01:intron 30.0%
!! TATATAACGGATGATTTCAG+AGG + Chr1:32906261-32906280 None:intergenic 30.0%
!!! ATATGATGGGTTGTATTTTG+TGG - Chr1:32905753-32905772 MsG0180002101.01.T01:intron 30.0%
!!! GTTGATTTGATCCAACTTTT+TGG + Chr1:32906467-32906486 None:intergenic 30.0%
!!! TTGTCTTTTTCGGAAAGTTT+TGG + Chr1:32905959-32905978 None:intergenic 30.0%
AAGACGAATCGTTCAATACT+AGG - Chr1:32906129-32906148 MsG0180002101.01.T01:intron 35.0%
ACATCTTTCACAACTAGGTT+AGG + Chr1:32906686-32906705 None:intergenic 35.0%
AGAACAAAACTTCTCCGTTA+AGG + Chr1:32904663-32904682 None:intergenic 35.0%
ATGAAGAACACAAGCAAGAA+GGG + Chr1:32906293-32906312 None:intergenic 35.0%
ATGGTGGTAACCCTAATATA+AGG - Chr1:32905575-32905594 MsG0180002101.01.T01:intron 35.0%
CAAAGAAAAGTTCCCTATTC+GGG - Chr1:32906038-32906057 MsG0180002101.01.T01:intron 35.0%
CATCACAACAACCAAAAAGT+TGG - Chr1:32906453-32906472 MsG0180002101.01.T01:intron 35.0%
CATGTAGATGGAATTGAAGT+TGG - Chr1:32905382-32905401 MsG0180002101.01.T01:intron 35.0%
CCAATAAGAATGGAGGAAAA+AGG + Chr1:32904150-32904169 None:intergenic 35.0%
CGAAAAAGACAAATGTCTAG+AGG - Chr1:32905967-32905986 MsG0180002101.01.T01:intron 35.0%
CGAATCAATGATATTTCGGA+GGG - Chr1:32906015-32906034 MsG0180002101.01.T01:intron 35.0%
CTCGAGGAAAAACATTCTTT+GGG + Chr1:32905924-32905943 None:intergenic 35.0%
GAAAACACTGGAAAGAGAAT+AGG - Chr1:32905358-32905377 MsG0180002101.01.T01:intron 35.0%
GAAAGCAAAATTAAGGGCTT+TGG - Chr1:32905297-32905316 MsG0180002101.01.T01:intron 35.0%
GCAAAGAAAAGTTCCCTATT+CGG - Chr1:32906037-32906056 MsG0180002101.01.T01:intron 35.0%
TAAGAAAATTCAGGACCAAC+CGG - Chr1:32905831-32905850 MsG0180002101.01.T01:intron 35.0%
TATGAAAGCGAAACGTCAAT+GGG - Chr1:32905336-32905355 MsG0180002101.01.T01:intron 35.0%
TCACTCTTTCAACTCCTTAA+CGG - Chr1:32904646-32904665 MsG0180002101.01.T01:CDS 35.0%
TCATCCGTTATATATGAGTG+TGG - Chr1:32906267-32906286 MsG0180002101.01.T01:intron 35.0%
TCGAATCAATGATATTTCGG+AGG - Chr1:32906014-32906033 MsG0180002101.01.T01:intron 35.0%
TCTATGAGTTACAACAATGC+TGG + Chr1:32905509-32905528 None:intergenic 35.0%
TCTCGAGGAAAAACATTCTT+TGG + Chr1:32905925-32905944 None:intergenic 35.0%
TCTGGTTGTTTGCTTTATGA+AGG - Chr1:32905550-32905569 MsG0180002101.01.T01:intron 35.0%
TGACCAATTTCAATATAGGG+CGG - Chr1:32905405-32905424 MsG0180002101.01.T01:intron 35.0%
TGGTGGTAACCCTAATATAA+GGG - Chr1:32905576-32905595 MsG0180002101.01.T01:intron 35.0%
TGTGTTTGCATAGCTAAGAA+TGG - Chr1:32906195-32906214 MsG0180002101.01.T01:intron 35.0%
TGTTTGCTTTATGAAGGTCA+TGG - Chr1:32905556-32905575 MsG0180002101.01.T01:intron 35.0%
TTATGAAAGCGAAACGTCAA+TGG - Chr1:32905335-32905354 MsG0180002101.01.T01:intron 35.0%
TTGCTGTAAGGTGAATATCA+AGG - Chr1:32906799-32906818 MsG0180002101.01.T01:intron 35.0%
TTGTGGAATAGTATGAATGC+GGG - Chr1:32905646-32905665 MsG0180002101.01.T01:intron 35.0%
TTTGCATAGCTAAGAATGGT+GGG - Chr1:32906199-32906218 MsG0180002101.01.T01:intron 35.0%
! AAACATTCTTTGGGAGAACA+TGG + Chr1:32905915-32905934 None:intergenic 35.0%
! AATTTGCTTCTGTGGTTCAT+TGG - Chr1:32906832-32906851 MsG0180002101.01.T01:intron 35.0%
! AGTATTGAACGATTCGTCTT+TGG + Chr1:32906129-32906148 None:intergenic 35.0%
! CATATTGACTAGGTAACCAA+AGG + Chr1:32906100-32906119 None:intergenic 35.0%
! CCTTTTTCCTCCATTCTTAT+TGG - Chr1:32904147-32904166 MsG0180002101.01.T01:CDS 35.0%
! GTAGCAAACAACATTTTGTG+GGG + Chr1:32906737-32906756 None:intergenic 35.0%
! TGTTTTTCCTCGAGATGTTA+TGG - Chr1:32905930-32905949 MsG0180002101.01.T01:intron 35.0%
!! AGGGGTATTTGTGTAATTCT+GGG - Chr1:32902999-32903018 MsG0180002101.01.T01:CDS 35.0%
!! ATTGATTCGAACAACATCCT+TGG + Chr1:32906004-32906023 None:intergenic 35.0%
!! GAATGTGATTTTTGACTCAC+TGG - Chr1:32904790-32904809 MsG0180002101.01.T01:intron 35.0%
!! TATAACGGATGATTTCAGAG+GGG + Chr1:32906259-32906278 None:intergenic 35.0%
!! TGTGTAATTCTGGGGTTAAT+GGG - Chr1:32903008-32903027 MsG0180002101.01.T01:CDS 35.0%
!! TTGTGTAATTCTGGGGTTAA+TGG - Chr1:32903007-32903026 MsG0180002101.01.T01:CDS 35.0%
!!! GTAGTGACACTGTTTTGAAA+CGG - Chr1:32905188-32905207 MsG0180002101.01.T01:intron 35.0%
AAACGTCAATGGGAAAACAC+TGG - Chr1:32905346-32905365 MsG0180002101.01.T01:intron 40.0%
AAAGTTCCCATAACATCTCG+AGG + Chr1:32905868-32905887 None:intergenic 40.0%
AAGAGAATAGGGCATGTAGA+TGG - Chr1:32905370-32905389 MsG0180002101.01.T01:intron 40.0%
AAGTTCCCATAACATCTCGA+GGG + Chr1:32905867-32905886 None:intergenic 40.0%
AATCGTTCAATACTAGGTGG+TGG - Chr1:32906135-32906154 MsG0180002101.01.T01:intron 40.0%
ACCTGCAATATAACCCTAAC+AGG + Chr1:32905676-32905695 None:intergenic 40.0%
ACGAATCGTTCAATACTAGG+TGG - Chr1:32906132-32906151 MsG0180002101.01.T01:intron 40.0%
ACTAGGTAACCAAAGGGTTT+AGG + Chr1:32906093-32906112 None:intergenic 40.0%
ACTCACTGAAATGAAGAGTG+TGG + Chr1:32904324-32904343 None:intergenic 40.0%
ACTCGAGTAAGAGGACAATT+TGG - Chr1:32905784-32905803 MsG0180002101.01.T01:intron 40.0%
AGGGCCACACTCATATATAA+CGG + Chr1:32906274-32906293 None:intergenic 40.0%
AGGGCGGAACTTATTGTAAT+TGG - Chr1:32905421-32905440 MsG0180002101.01.T01:intron 40.0%
CAGAAGAGACACAATTCTGA+AGG - Chr1:32905889-32905908 MsG0180002101.01.T01:intron 40.0%
CAGAGAAAAACCCTGAACTA+AGG + Chr1:32904373-32904392 None:intergenic 40.0%
CTAGACATGGAAACATTGGA+AGG - Chr1:32906639-32906658 MsG0180002101.01.T01:intron 40.0%
CTTCAGAATTGTGTCTCTTC+TGG + Chr1:32905891-32905910 None:intergenic 40.0%
GATGAAGAACACAAGCAAGA+AGG + Chr1:32906294-32906313 None:intergenic 40.0%
GATTATTTGGGTAAAGGGGA+GGG - Chr1:32905472-32905491 MsG0180002101.01.T01:intron 40.0%
GCAACTAGACATGGAAACAT+TGG - Chr1:32906635-32906654 MsG0180002101.01.T01:intron 40.0%
GCGAATGTTATGAAGTCTTC+TGG - Chr1:32905532-32905551 MsG0180002101.01.T01:intron 40.0%
GGTAACCCTAATATAAGGGA+CGG - Chr1:32905580-32905599 MsG0180002101.01.T01:intron 40.0%
GGTATCTCCACATAGCTTAT+AGG + Chr1:32906072-32906091 None:intergenic 40.0%
GTTCCGCCCTATATTGAAAT+TGG + Chr1:32905411-32905430 None:intergenic 40.0%
GTTTGCATAGCTAAGAATGG+TGG - Chr1:32906198-32906217 MsG0180002101.01.T01:intron 40.0%
TCCTGTTAGGGTTATATTGC+AGG - Chr1:32905672-32905691 MsG0180002101.01.T01:intron 40.0%
TCTCTCTCTCTCAACAAACA+AGG - Chr1:32904393-32904412 MsG0180002101.01.T01:CDS 40.0%
TGATTATTTGGGTAAAGGGG+AGG - Chr1:32905471-32905490 MsG0180002101.01.T01:intron 40.0%
TGTGGAATAGTATGAATGCG+GGG - Chr1:32905647-32905666 MsG0180002101.01.T01:intron 40.0%
TGTGGTTCATTGGAATGCAA+TGG - Chr1:32906842-32906861 MsG0180002101.01.T01:CDS 40.0%
TTGCATAGCTAAGAATGGTG+GGG - Chr1:32906200-32906219 MsG0180002101.01.T01:intron 40.0%
TTGCTTTATGAAGGTCATGG+TGG - Chr1:32905559-32905578 MsG0180002101.01.T01:intron 40.0%
TTGGTTTCCATAACATCTCG+AGG + Chr1:32905940-32905959 None:intergenic 40.0%
! AAGAGTGTGGTTTGTGTAGT+GGG + Chr1:32904311-32904330 None:intergenic 40.0%
! AGGCTTCTAGAAGCTTAATG+AGG - Chr1:32903041-32903060 MsG0180002101.01.T01:CDS 40.0%
! CTTCTAGAAGCTTAATGAGG+CGG - Chr1:32903044-32903063 MsG0180002101.01.T01:CDS 40.0%
! GAATACCAGATTGACTCACT+CGG + Chr1:32906326-32906345 None:intergenic 40.0%
! GGGGTATTTGTGTAATTCTG+GGG - Chr1:32903000-32903019 MsG0180002101.01.T01:CDS 40.0%
! TACCACATGAGTGTTGTTGA+TGG + Chr1:32905450-32905469 None:intergenic 40.0%
! TGCATTGATGCAACTAGACA+TGG - Chr1:32906626-32906645 MsG0180002101.01.T01:intron 40.0%
!! CAGGGGTATTTGTGTAATTC+TGG - Chr1:32902998-32903017 MsG0180002101.01.T01:CDS 40.0%
!!! CACTGTTTTGAAACGGAGAA+AGG - Chr1:32905195-32905214 MsG0180002101.01.T01:intron 40.0%
ACACAAATACCCCTGTTGCT+TGG + Chr1:32902993-32903012 None:intergenic 45.0%
ACACGCTCTTTCATTCCATC+CGG - Chr1:32906396-32906415 MsG0180002101.01.T01:intron 45.0%
AGAAAAGTTCCCTATTCGGG+TGG - Chr1:32906041-32906060 MsG0180002101.01.T01:intron 45.0%
AGTTCCCATAACATCTCGAG+GGG + Chr1:32905866-32905885 None:intergenic 45.0%
ATCAACCGAGTGAGTCAATC+TGG - Chr1:32906318-32906337 MsG0180002101.01.T01:intron 45.0%
CATCGCATTCCTAAGGACAT+GGG + Chr1:32903180-32903199 None:intergenic 45.0%
CGACACCGTCCCTTATATTA+GGG + Chr1:32905588-32905607 None:intergenic 45.0%
CTCCATCAACAACACTCATG+TGG - Chr1:32905445-32905464 MsG0180002101.01.T01:intron 45.0%
GACAATGTGACTCGAGTAAG+AGG - Chr1:32905775-32905794 MsG0180002101.01.T01:intron 45.0%
GGTGACACCTATAAGCTATG+TGG - Chr1:32906062-32906081 MsG0180002101.01.T01:intron 45.0%
GTGGAGATACCTAAACCCTT+TGG - Chr1:32906081-32906100 MsG0180002101.01.T01:intron 45.0%
GTTTCCCCTCGAGATGTTAT+GGG - Chr1:32905859-32905878 MsG0180002101.01.T01:intron 45.0%
TCATCGCATTCCTAAGGACA+TGG + Chr1:32903181-32903200 None:intergenic 45.0%
TGGTCTGACTCCTTAGTTCA+GGG - Chr1:32904360-32904379 MsG0180002101.01.T01:CDS 45.0%
TGTCCTTAGGAATGCGATGA+CGG - Chr1:32903181-32903200 MsG0180002101.01.T01:CDS 45.0%
TGTTTCCCCTCGAGATGTTA+TGG - Chr1:32905858-32905877 MsG0180002101.01.T01:intron 45.0%
TTGGTCTGACTCCTTAGTTC+AGG - Chr1:32904359-32904378 MsG0180002101.01.T01:CDS 45.0%
! AATGCGATGACGGTCCAATA+TGG - Chr1:32903191-32903210 MsG0180002101.01.T01:CDS 45.0%
! AGCTTTGTGTGTGAGCTCAT+TGG - Chr1:32906420-32906439 MsG0180002101.01.T01:intron 45.0%
! CACAAATACCCCTGTTGCTT+GGG + Chr1:32902992-32903011 None:intergenic 45.0%
! GAAGAGTGTGGTTTGTGTAG+TGG + Chr1:32904312-32904331 None:intergenic 45.0%
! TTGGGAGAAAGCGTGAAGAA+TGG - Chr1:32905128-32905147 MsG0180002101.01.T01:intron 45.0%
!! GCGCAACAGTGGATTGTTAA+TGG + Chr1:32903881-32903900 None:intergenic 45.0%
!! GTAATTCTGGGGTTAATGGG+CGG - Chr1:32903011-32903030 MsG0180002101.01.T01:CDS 45.0%
!! TAGAGGTCTTGTTCTCTCCA+AGG - Chr1:32905984-32906003 MsG0180002101.01.T01:intron 45.0%
!! ATATTGTAAATTAAATTTAT+AGG + Chr1:32903302-32903321 None:intergenic 5.0%
!! TATTGTAAATTAAATTTATA+GGG + Chr1:32903301-32903320 None:intergenic 5.0%
CATGATCAGAAATTGGCGCG+CGG - Chr1:32905613-32905632 MsG0180002101.01.T01:intron 50.0%
CGCGCCAATTTCTGATCATG+AGG + Chr1:32905613-32905632 None:intergenic 50.0%
CGCGCCTCATGATCAGAAAT+TGG - Chr1:32905606-32905625 MsG0180002101.01.T01:intron 50.0%
GAGCTCACACACAAAGCTTC+CGG + Chr1:32906418-32906437 None:intergenic 50.0%
GCGACACCGTCCCTTATATT+AGG + Chr1:32905589-32905608 None:intergenic 50.0%
GCTACAAAGGACATACCTGC+AGG - Chr1:32906752-32906771 MsG0180002101.01.T01:intron 50.0%
GGCTTAGAGCCTTCTTTGGA+GGG - Chr1:32903152-32903171 MsG0180002101.01.T01:CDS 50.0%
TAACTCAGCTCTCTACCTGC+AGG + Chr1:32906770-32906789 None:intergenic 50.0%
TAAGCCCTCCAGAAAAGCCT+GGG + Chr1:32903138-32903157 None:intergenic 50.0%
TCACACACAAAGCTTCCGGA+TGG + Chr1:32906414-32906433 None:intergenic 50.0%
TGCTTGGTTCCCAAGCAACA+GGG - Chr1:32902980-32902999 MsG0180002101.01.T01:CDS 50.0%
TTGCTTGGTTCCCAAGCAAC+AGG - Chr1:32902979-32902998 MsG0180002101.01.T01:CDS 50.0%
! ATAGGTGTCACCACCCGAAT+AGG + Chr1:32906054-32906073 None:intergenic 50.0%
! GGTTAATGGGCGGTTTCTAG+AGG - Chr1:32903021-32903040 MsG0180002101.01.T01:CDS 50.0%
! GGTTTGTGTAGTGGGAGAGT+GGG + Chr1:32904303-32904322 None:intergenic 50.0%
! TAGGTGTCACCACCCGAATA+GGG + Chr1:32906053-32906072 None:intergenic 50.0%
! TGGTTTGTGTAGTGGGAGAG+TGG + Chr1:32904304-32904323 None:intergenic 50.0%
!! GAGAGGCGGTTTTATACACG+AGG + Chr1:32904281-32904300 None:intergenic 50.0%
ACATGGGAGCCCTCCAAAGA+AGG + Chr1:32903164-32903183 None:intergenic 55.0%
CGCGCGGAAATCTTGCTTTG+TGG - Chr1:32905629-32905648 MsG0180002101.01.T01:intron 55.0%
CTAAGCCCTCCAGAAAAGCC+TGG + Chr1:32903139-32903158 None:intergenic 55.0%
GAATGCGGGGAGTCCTGTTA+GGG - Chr1:32905660-32905679 MsG0180002101.01.T01:intron 55.0%
GCTTGGTTCCCAAGCAACAG+GGG - Chr1:32902981-32903000 MsG0180002101.01.T01:CDS 55.0%
GGACCGTCATCGCATTCCTA+AGG + Chr1:32903187-32903206 None:intergenic 55.0%
GGAGGGCTTAGAGCCTTCTT+TGG - Chr1:32903148-32903167 MsG0180002101.01.T01:CDS 55.0%
GGCTCAGGAATCCTTCTGGA+GGG - Chr1:32903089-32903108 MsG0180002101.01.T01:CDS 55.0%
GGGCTTAGAGCCTTCTTTGG+AGG - Chr1:32903151-32903170 MsG0180002101.01.T01:CDS 55.0%
GGGTAAAGGGGAGGGTTCTT+TGG - Chr1:32905480-32905499 MsG0180002101.01.T01:intron 55.0%
TCTCGAGGGGAAACACTAGC+CGG + Chr1:32905853-32905872 None:intergenic 55.0%
TGAATGCGGGGAGTCCTGTT+AGG - Chr1:32905659-32905678 MsG0180002101.01.T01:intron 55.0%
! GGTGGGGCATTAGCCTATGA+TGG - Chr1:32906216-32906235 MsG0180002101.01.T01:intron 55.0%
CCAGAAGGATTCCTGAGCCC+TGG + Chr1:32903088-32903107 None:intergenic 60.0%
CCAGGGCTCAGGAATCCTTC+TGG - Chr1:32903085-32903104 MsG0180002101.01.T01:CDS 60.0%
GAGGGGAAACACTAGCCGGT+TGG + Chr1:32905849-32905868 None:intergenic 60.0%
GGGCTCAGGAATCCTTCTGG+AGG - Chr1:32903088-32903107 MsG0180002101.01.T01:CDS 60.0%
TAATGAGGCGGCGCCCTTCA+GGG - Chr1:32903056-32903075 MsG0180002101.01.T01:CDS 60.0%
TAGTGGGAGAGTGGGAGAGG+CGG + Chr1:32904295-32904314 None:intergenic 60.0%
TGGAGGGCTCCCATGTCCTT+AGG - Chr1:32903168-32903187 MsG0180002101.01.T01:CDS 60.0%
TTAATGAGGCGGCGCCCTTC+AGG - Chr1:32903055-32903074 MsG0180002101.01.T01:CDS 60.0%
! GGGCTTGGGCTTTGGTTGCT+TGG - Chr1:32902964-32902983 MsG0180002101.01.T01:CDS 60.0%
! GGGCTTTGGCCGAAGCTACA+AGG - Chr1:32905311-32905330 MsG0180002101.01.T01:intron 60.0%
! GTGTAGTGGGAGAGTGGGAG+AGG + Chr1:32904298-32904317 None:intergenic 60.0%
AATGAGGCGGCGCCCTTCAG+GGG - Chr1:32903057-32903076 MsG0180002101.01.T01:CDS 65.0%
AGAAAAGCCTGGGCGCCCTC+TGG + Chr1:32903128-32903147 None:intergenic 65.0%
GTTGCGCAGCTGCGCAACAG+TGG + Chr1:32903913-32903894 None:intergenic 65.0%
! GGCGCCCAGGCTTTTCTGGA+GGG - Chr1:32903131-32903150 MsG0180002101.01.T01:CDS 65.0%
!! AATCCTTCTGGAGGGCGCCC+AGG - Chr1:32903097-32903116 MsG0180002101.01.T01:CDS 65.0%
!!! AGAGGGCGCCCAGGCTTTTC+TGG - Chr1:32903127-32903146 MsG0180002101.01.T01:CDS 65.0%
AAGCCTGGGCGCCCTCTGGA+AGG + Chr1:32903124-32903143 None:intergenic 70.0%
ATGAGGCGGCGCCCTTCAGG+GGG - Chr1:32903058-32903077 MsG0180002101.01.T01:CDS 70.0%
! AGCCTGGGCGCCCTCTGGAA+GGG + Chr1:32903123-32903142 None:intergenic 70.0%
! GGGCGCCCAGGCTTTTCTGG+AGG - Chr1:32903130-32903149 MsG0180002101.01.T01:CDS 70.0%
GGCGCCCAGGCCCTTCCAGA+GGG - Chr1:32903110-32903129 MsG0180002101.01.T01:CDS 75.0%
! GGCGCCCTCTGGAAGGGCCT+GGG + Chr1:32903117-32903136 None:intergenic 75.0%
! AGCCCTGGCGCGCCCCCTGA+AGG + Chr1:32903073-32903092 None:intergenic 80.0%
! GCCCTGGCGCGCCCCCTGAA+GGG + Chr1:32903072-32903091 None:intergenic 80.0%
! GGGCCTGGGCGCCCTCCAGA+AGG + Chr1:32903103-32903122 None:intergenic 80.0%
! GGGCGCCCAGGCCCTTCCAG+AGG - Chr1:32903109-32903128 MsG0180002101.01.T01:CDS 80.0%
!! GCCCTTCAGGGGGCGCGCCA+GGG - Chr1:32903068-32903087 MsG0180002101.01.T01:CDS 80.0%
!! GGGCGCCCTCTGGAAGGGCC+TGG + Chr1:32903118-32903137 None:intergenic 80.0%
!!! GGCCCTTCCAGAGGGCGCCC+AGG - Chr1:32903118-32903137 MsG0180002101.01.T01:CDS 80.0%
!! CAGGGGGCGCGCCAGGGCTC+AGG - Chr1:32903074-32903093 MsG0180002101.01.T01:CDS 85.0%
!! CGCCCTTCAGGGGGCGCGCC+AGG - Chr1:32903067-32903086 MsG0180002101.01.T01:CDS 85.0%
Chromosome Type Strat End Strand Name
Chr1 gene 32902962 32906880 32902962 ID=MsG0180002101.01;Name=MsG0180002101.01
Chr1 mRNA 32902962 32906880 32902962 ID=MsG0180002101.01.T01;Parent=MsG0180002101.01;Name=MsG0180002101.01.T01;_AED=0.34;_eAED=0.35;_QI=0|0|0|0.66|1|1|3|0|579
Chr1 exon 32906840 32906880 32906840 ID=MsG0180002101.01.T01:exon:36506;Parent=MsG0180002101.01.T01
Chr1 exon 32903329 32904755 32903329 ID=MsG0180002101.01.T01:exon:36507;Parent=MsG0180002101.01.T01
Chr1 exon 32902962 32903233 32902962 ID=MsG0180002101.01.T01:exon:36508;Parent=MsG0180002101.01.T01
Chr1 CDS 32906840 32906880 32906840 ID=MsG0180002101.01.T01:cds;Parent=MsG0180002101.01.T01
Chr1 CDS 32903329 32904755 32903329 ID=MsG0180002101.01.T01:cds;Parent=MsG0180002101.01.T01
Chr1 CDS 32902962 32903233 32902962 ID=MsG0180002101.01.T01:cds;Parent=MsG0180002101.01.T01
Gene Sequence

>MsG0180002101.01.T01

ATGGGCTTGGGCTTTGGTTGCTTGGTTCCCAAGCAACAGGGGTGTTTTTATTTGCTGATGAAGATGCAAAGTTCAAAATCTTTTGGGAGAAAGCGTGAAGAATGGTCATATACTGAGAACCTTTCATCTTCTGACAAGATAAGTAGTGACACTGTTTTGAAACGGAGAAAGGTGAATAAAGCATTAACAATTTTTAGGGACTTATCACACAAACTCTATTGTGAATACAAGTCAAACCAACCTGTAAAATTGAAAGCAAAATTAAGGGCTTTGGCCGAAGCTACAAGGTTTATGAAAGCGAAACGTCAATGGGAAAACACTGGAAAGAGAATAGGGCATGTAGATGGAATTGAAGTTGGTGACCAATTTCAATATAGGGCGGAACTTATTGTAATTGGTCTCCATCAACAACACTCATGTGGTATTGATTATTTGGGTAAAGGGGAGGGTTCTTTGGCAACCAGCATTGTTGTAACTCATAGATATGCGAATGTTATGAAGTCTTCTGGTTGTTTGCTTTATGAAGGTCATGGTGGTAACCCTAATATAAGGGACGGTGTCGCGCCTCATGATCAGAAATTGGCGCGCGGAAATCTTGCTTTGTGGAATAGTATGAATGCGGGGAGTCCTGTTAGGGTTATATTGCAGGTTTCTGAAAAATCTGAAGTGATGGAAGAGTTGAGCAACAATGTTTCTTATTCATACATATATGATGGGTTGTATTTTGTGGACAATGTGACTCGAGTAAGAGGACAATTTGGAAAACTTGTTTTCAAGTTTGTGCTTAAGAAAATTCAGGACCAACCGGCTAGTGTTTCCCCTCGAGATGTTATGGGAACTTTCCAGAAGAGACACAATTCTGAAGGCCATGTTCTCCCAAAGAATGTTTTTCCTCGAGATGTTATGGAAACCAAAACTTTCCGAAAAAGACAAATGTCTAGAGGTCTTGTTCTCTCCAAGGATGTTGTTCGAATCAATGATATTTCGGAGGGCAAAGAAAAGTTCCCTATTCGGGTGGTGACACCTATAAGCTATGTGGAGATACCTAAACCCTTTGGTTACCTAGTCAATATGACTTATCCAAAGACGAATCGTTCAATACTAGGTGGTGGATGTAATTGTGAGAATGCATGTGTTGATTGTCTTGAATGTGTTTGCATAGCTAAGAATGGTGGGGCATTAGCCTATGATGGTAACAAAAAACTTGTTTCCCCTCTGAAATCATCCGTTATATATGAGTGTGGCCCTTCTTGCTTGTGTTCTTCATCTTGCATCAACCGAGTGAGTCAATCTGGTATTCAGTTCCAACTTGAAATCTTCAAAACAAAATTGAAAGGGTGGGGTGTTCGAACACGCTCTTTCATTCCATCCGGAAGCTTTGTGTGTGAGCTCATTGGAGAAGTTATTCATCACAACAACCAAAAAGTTGGATCAAATCAACATGTTGATGACTATATAATTAATATGGGTGCTTCTAGCAAGAGCTGCATTGATGCAACTAGACATGGAAACATTGGAAGGTTTATAAATCATAGTTGTTCTCCTAACCTAGTTGTGAAAGATGTTATGTTTGATCACAATGATAAGAGTTTACCCCACAAAATGTTGTTTGCTACAAAGGACATACCTGCAGGTAGAGAGCTGAGTTATGATTACAATTGCTGTAAGGTGAATATCAAGGTTTTGAGTAAAATTTGCTTCTGTGGTTCATTGGAATGCAATGGACAAATTTACATTTGA
Protein sequence

>MsG0180002101.01.T01

MGLGFGCLVPKQQGCFYLLMKMQSSKSFGRKREEWSYTENLSSSDKISSDTVLKRRKVNKALTIFRDLSHKLYCEYKSNQPVKLKAKLRALAEATRFMKAKRQWENTGKRIGHVDGIEVGDQFQYRAELIVIGLHQQHSCGIDYLGKGEGSLATSIVVTHRYANVMKSSGCLLYEGHGGNPNIRDGVAPHDQKLARGNLALWNSMNAGSPVRVILQVSEKSEVMEELSNNVSYSYIYDGLYFVDNVTRVRGQFGKLVFKFVLKKIQDQPASVSPRDVMGTFQKRHNSEGHVLPKNVFPRDVMETKTFRKRQMSRGLVLSKDVVRINDISEGKEKFPIRVVTPISYVEIPKPFGYLVNMTYPKTNRSILGGGCNCENACVDCLECVCIAKNGGALAYDGNKKLVSPLKSSVIYECGPSCLCSSSCINRVSQSGIQFQLEIFKTKLKGWGVRTRSFIPSGSFVCELIGEVIHHNNQKVGSNQHVDDYIINMGASSKSCIDATRHGNIGRFINHSCSPNLVVKDVMFDHNDKSLPHKMLFATKDIPAGRELSYDYNCCKVNIKVLSKICFCGSLECNGQIYI*