Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028436.01.T01 | XP_024640980.2 | 90.312 | 320 | 22 | 5 | 25 | 338 | 27 | 343 | 3.22E-180 | 512 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028436.01.T01 | A0A396HT34 | 90.312 | 320 | 22 | 5 | 25 | 338 | 27 | 343 | 1.54e-180 | 512 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048291.01 | MsG0580028436.01 | 0.819895 | 9.133546e-53 | 7.118911e-50 |
| MsG0080048461.01 | MsG0580028436.01 | 0.804786 | 1.827959e-49 | 9.510286e-47 |
| MsG0080048787.01 | MsG0580028436.01 | 0.805552 | 1.263247e-49 | 6.702700e-47 |
| MsG0080048856.01 | MsG0580028436.01 | 0.822241 | 2.631226e-53 | 2.189991e-50 |
| MsG0180000145.01 | MsG0580028436.01 | 0.818958 | 1.493838e-52 | 1.134479e-49 |
| MsG0180000332.01 | MsG0580028436.01 | 0.805265 | 1.451411e-49 | 7.644263e-47 |
| MsG0180000632.01 | MsG0580028436.01 | 0.802266 | 6.087178e-49 | 2.968789e-46 |
| MsG0180000836.01 | MsG0580028436.01 | 0.823103 | 1.658710e-53 | 1.414820e-50 |
| MsG0180001771.01 | MsG0580028436.01 | 0.824194 | 9.210571e-54 | 8.101698e-51 |
| MsG0180001892.01 | MsG0580028436.01 | 0.825045 | 5.804481e-54 | 5.232338e-51 |
| MsG0180002101.01 | MsG0580028436.01 | 0.806165 | 9.389756e-50 | 5.061394e-47 |
| MsG0180002492.01 | MsG0580028436.01 | 0.812073 | 5.093510e-51 | 3.206719e-48 |
| MsG0180003094.01 | MsG0580028436.01 | 0.807532 | 4.826623e-50 | 2.694945e-47 |
| MsG0180003361.01 | MsG0580028436.01 | 0.810478 | 1.129825e-50 | 6.817689e-48 |
| MsG0180003403.01 | MsG0580028436.01 | 0.810543 | 1.093865e-50 | 6.611902e-48 |
| MsG0180003572.01 | MsG0580028436.01 | 0.809879 | 1.521099e-50 | 9.035798e-48 |
| MsG0180003741.01 | MsG0580028436.01 | 0.823660 | 1.228822e-53 | 1.064806e-50 |
| MsG0180003920.01 | MsG0580028436.01 | 0.809883 | 1.517841e-50 | 9.017343e-48 |
| MsG0180003943.01 | MsG0580028436.01 | 0.811574 | 6.540969e-51 | 4.063394e-48 |
| MsG0180003951.01 | MsG0580028436.01 | 0.814565 | 1.444283e-51 | 9.724628e-49 |
| MsG0180004099.01 | MsG0580028436.01 | 0.830469 | 2.885748e-55 | 3.042892e-52 |
| MsG0180004389.01 | MsG0580028436.01 | 0.826286 | 2.948174e-54 | 2.752947e-51 |
| MsG0180004743.01 | MsG0580028436.01 | 0.808459 | 3.065252e-50 | 1.753667e-47 |
| MsG0180004754.01 | MsG0580028436.01 | 0.810005 | 1.429312e-50 | 8.518829e-48 |
| MsG0180004765.01 | MsG0580028436.01 | 0.810019 | 1.418993e-50 | 8.460649e-48 |
| MsG0180005049.01 | MsG0580028436.01 | 0.815831 | 7.556379e-52 | 5.265993e-49 |
| MsG0180005153.01 | MsG0580028436.01 | 0.818615 | 1.786820e-52 | 1.343985e-49 |
| MsG0180005575.01 | MsG0580028436.01 | 0.836539 | 8.821628e-57 | 1.115017e-53 |
| MsG0180006024.01 | MsG0580028436.01 | 0.808141 | 3.584019e-50 | 2.033325e-47 |
| MsG0280010722.01 | MsG0580028436.01 | 0.800180 | 1.626564e-48 | 7.524155e-46 |
| MsG0280010778.01 | MsG0580028436.01 | 0.817793 | 2.742872e-52 | 2.017074e-49 |
| MsG0280010907.01 | MsG0580028436.01 | 0.815610 | 8.464638e-52 | 5.864046e-49 |
| MsG0280010980.01 | MsG0580028436.01 | 0.804729 | 1.878605e-49 | 9.759660e-47 |
| MsG0280011003.01 | MsG0580028436.01 | 0.801971 | 6.998217e-49 | 3.387360e-46 |
| MsG0280011014.01 | MsG0580028436.01 | 0.822780 | 1.972483e-53 | 1.667151e-50 |
| MsG0280011124.01 | MsG0580028436.01 | 0.801904 | 7.223495e-49 | 3.490700e-46 |
| MsG0280011258.01 | MsG0580028436.01 | 0.822217 | 2.666383e-53 | 2.217658e-50 |
| MsG0280011319.01 | MsG0580028436.01 | 0.801982 | 6.962404e-49 | 3.371009e-46 |
| MsG0380011496.01 | MsG0580028436.01 | 0.838618 | 2.584473e-57 | 3.480779e-54 |
| MsG0380011501.01 | MsG0580028436.01 | 0.854276 | 1.370993e-61 | 3.045988e-58 |
| MsG0380012067.01 | MsG0580028436.01 | 0.827857 | 1.241218e-54 | 1.213018e-51 |
| MsG0380012460.01 | MsG0580028436.01 | 0.800217 | 1.598545e-48 | 7.401611e-46 |
| MsG0380013475.01 | MsG0580028436.01 | 0.833113 | 6.427365e-56 | 7.330932e-53 |
| MsG0380013476.01 | MsG0580028436.01 | 0.816390 | 5.667061e-52 | 4.010351e-49 |
| MsG0380014097.01 | MsG0580028436.01 | 0.812645 | 3.820221e-51 | 2.442271e-48 |
| MsG0380014495.01 | MsG0580028436.01 | 0.809052 | 2.288968e-50 | 1.330136e-47 |
| MsG0380014537.01 | MsG0580028436.01 | 0.804869 | 1.755950e-49 | 9.155931e-47 |
| MsG0380014701.01 | MsG0580028436.01 | 0.820361 | 7.145479e-53 | 5.641677e-50 |
| MsG0480018909.01 | MsG0580028436.01 | 0.824367 | 8.387420e-54 | 7.413907e-51 |
| MsG0480019276.01 | MsG0580028436.01 | 0.808693 | 2.732254e-50 | 1.572600e-47 |
| MsG0480019350.01 | MsG0580028436.01 | 0.818879 | 1.556347e-52 | 1.179315e-49 |
| MsG0480019710.01 | MsG0580028436.01 | 0.821585 | 3.734622e-53 | 3.050663e-50 |
| MsG0480019922.01 | MsG0580028436.01 | 0.809980 | 1.446637e-50 | 8.616463e-48 |
| MsG0480020064.01 | MsG0580028436.01 | 0.801134 | 1.039057e-48 | 4.924490e-46 |
| MsG0480020495.01 | MsG0580028436.01 | 0.812545 | 4.017484e-51 | 2.561713e-48 |
| MsG0480020739.01 | MsG0580028436.01 | 0.805927 | 1.053884e-49 | 5.646133e-47 |
| MsG0480020780.01 | MsG0580028436.01 | 0.827236 | 1.749317e-54 | 1.678891e-51 |
| MsG0480020879.01 | MsG0580028436.01 | 0.808263 | 3.375727e-50 | 1.921380e-47 |
| MsG0480021195.01 | MsG0580028436.01 | 0.826611 | 2.467072e-54 | 2.325030e-51 |
| MsG0480021452.01 | MsG0580028436.01 | 0.812751 | 3.620579e-51 | 2.321068e-48 |
| MsG0480021465.01 | MsG0580028436.01 | 0.801977 | 6.980043e-49 | 3.379073e-46 |
| MsG0480022164.01 | MsG0580028436.01 | 0.802561 | 5.292521e-49 | 2.600580e-46 |
| MsG0480022696.01 | MsG0580028436.01 | 0.815570 | 8.640394e-52 | 5.978798e-49 |
| MsG0480023172.01 | MsG0580028436.01 | 0.830241 | 3.280344e-55 | 3.436685e-52 |
| MsG0480023463.01 | MsG0580028436.01 | 0.807336 | 5.311875e-50 | 2.950863e-47 |
| MsG0480023600.01 | MsG0580028436.01 | 0.814675 | 1.365019e-51 | 9.218025e-49 |
| MsG0580024197.01 | MsG0580028436.01 | 0.816523 | 5.291967e-52 | 3.758492e-49 |
| MsG0580024330.01 | MsG0580028436.01 | 0.814269 | 1.679123e-51 | 1.121546e-48 |
| MsG0580025332.01 | MsG0580028436.01 | 0.803364 | 3.611879e-49 | 1.811493e-46 |
| MsG0580025466.01 | MsG0580028436.01 | 0.822769 | 1.984065e-53 | 1.676463e-50 |
| MsG0580025587.01 | MsG0580028436.01 | 0.807057 | 6.085744e-50 | 3.356264e-47 |
| MsG0380015332.01 | MsG0580028436.01 | 0.835829 | 1.336182e-56 | 1.653178e-53 |
| MsG0380015555.01 | MsG0580028436.01 | 0.816510 | 5.329591e-52 | 3.783715e-49 |
| MsG0380015786.01 | MsG0580028436.01 | 0.821869 | 3.209798e-53 | 2.643401e-50 |
| MsG0380015944.01 | MsG0580028436.01 | 0.844123 | 9.184435e-59 | 1.468236e-55 |
| MsG0380016199.01 | MsG0580028436.01 | 0.815011 | 1.149904e-51 | 7.836289e-49 |
| MsG0380016247.01 | MsG0580028436.01 | 0.811108 | 8.257516e-51 | 5.067108e-48 |
| MsG0380016267.01 | MsG0580028436.01 | 0.802094 | 6.602817e-49 | 3.206207e-46 |
| MsG0380016517.01 | MsG0580028436.01 | 0.804730 | 1.877365e-49 | 9.753723e-47 |
| MsG0380016970.01 | MsG0580028436.01 | 0.840305 | 9.420518e-58 | 1.336256e-54 |
| MsG0380017869.01 | MsG0580028436.01 | 0.840270 | 9.621853e-58 | 1.363378e-54 |
| MsG0480018313.01 | MsG0580028436.01 | 0.835541 | 1.580533e-56 | 1.938592e-53 |
| MsG0580026610.01 | MsG0580028436.01 | 0.823493 | 1.344762e-53 | 1.159711e-50 |
| MsG0580027091.01 | MsG0580028436.01 | 0.807425 | 5.085761e-50 | 2.831797e-47 |
| MsG0580027431.01 | MsG0580028436.01 | 0.805302 | 1.425104e-49 | 7.513275e-47 |
| MsG0580027650.01 | MsG0580028436.01 | 0.838724 | 2.426555e-57 | 3.278707e-54 |
| MsG0580027925.01 | MsG0580028436.01 | 0.865106 | 7.512006e-65 | 2.415326e-61 |
| MsG0580028176.01 | MsG0580028436.01 | 0.812043 | 5.170553e-51 | 3.252349e-48 |
| MsG0580028436.01 | MsG0580029236.01 | 0.811557 | 6.595725e-51 | 4.095658e-48 |
| MsG0580028436.01 | MsG0580029640.01 | 0.800420 | 1.453178e-48 | 6.763682e-46 |
| MsG0580028436.01 | MsG0580029736.01 | 0.801373 | 9.282077e-49 | 4.425582e-46 |
| MsG0580028436.01 | MsG0680030328.01 | 0.807181 | 5.729924e-50 | 3.170263e-47 |
| MsG0580028436.01 | MsG0680030674.01 | 0.811081 | 8.367985e-51 | 5.131334e-48 |
| MsG0580028436.01 | MsG0680030881.01 | 0.814196 | 1.742555e-51 | 1.161566e-48 |
| MsG0580028436.01 | MsG0680031431.01 | 0.800449 | 1.433841e-48 | 6.678130e-46 |
| MsG0580028436.01 | MsG0680031959.01 | 0.814178 | 1.758665e-51 | 1.171744e-48 |
| MsG0580028436.01 | MsG0680034853.01 | 0.833091 | 6.508745e-56 | 7.418848e-53 |
| MsG0580028436.01 | MsG0680035475.01 | 0.813627 | 2.325670e-51 | 1.526586e-48 |
| MsG0580028436.01 | MsG0680035658.01 | 0.851524 | 8.389038e-61 | 1.702692e-57 |
| MsG0580028436.01 | MsG0780036147.01 | 0.846112 | 2.665262e-59 | 4.538998e-56 |
| MsG0580028436.01 | MsG0780036593.01 | 0.801857 | 7.385952e-49 | 3.565030e-46 |
| MsG0580028436.01 | MsG0780036815.01 | 0.810553 | 1.088529e-50 | 6.581534e-48 |
| MsG0580028436.01 | MsG0780037054.01 | 0.806554 | 7.775680e-50 | 4.233032e-47 |
| MsG0580028436.01 | MsG0780038424.01 | 0.838088 | 3.539791e-57 | 4.690419e-54 |
| MsG0580028436.01 | MsG0780038603.01 | 0.807733 | 4.375036e-50 | 2.455661e-47 |
| MsG0580028436.01 | MsG0780038688.01 | 0.815103 | 1.097467e-51 | 7.496771e-49 |
| MsG0580028436.01 | MsG0780038690.01 | 0.811907 | 5.534634e-51 | 3.468678e-48 |
| MsG0580028436.01 | MsG0780038691.01 | 0.832789 | 7.735133e-56 | 8.736478e-53 |
| MsG0580028436.01 | MsG0780039170.01 | 0.837208 | 5.951870e-57 | 7.676442e-54 |
| MsG0580028436.01 | MsG0780039243.01 | 0.812813 | 3.510678e-51 | 2.254082e-48 |
| MsG0580028436.01 | MsG0780039443.01 | 0.833571 | 4.941804e-56 | 5.713542e-53 |
| MsG0580028436.01 | MsG0780040044.01 | 0.812211 | 4.752552e-51 | 3.003396e-48 |
| MsG0580028436.01 | MsG0780040287.01 | 0.831554 | 1.563378e-55 | 1.702512e-52 |
| MsG0580028436.01 | MsG0780040841.01 | 0.807310 | 5.380524e-50 | 2.987005e-47 |
| MsG0580028436.01 | MsG0780040846.01 | 0.814662 | 1.374139e-51 | 9.276195e-49 |
| MsG0580028436.01 | MsG0780040888.01 | 0.804955 | 1.684513e-49 | 8.802569e-47 |
| MsG0580028436.01 | MsG0780041083.01 | 0.806159 | 9.418959e-50 | 5.076237e-47 |
| MsG0580028436.01 | MsG0780041259.01 | 0.815208 | 1.040170e-51 | 7.125749e-49 |
| MsG0580028436.01 | MsG0780041440.01 | 0.812756 | 3.612122e-51 | 2.315923e-48 |
| MsG0580028436.01 | MsG0780041698.01 | 0.818388 | 2.012151e-52 | 1.504178e-49 |
| MsG0580028436.01 | MsG0880042310.01 | 0.827123 | 1.861570e-54 | 1.780634e-51 |
| MsG0580028436.01 | MsG0880042311.01 | 0.839193 | 1.833951e-57 | 2.513660e-54 |
| MsG0580028436.01 | MsG0880042518.01 | 0.802528 | 5.376019e-49 | 2.639399e-46 |
| MsG0580028436.01 | MsG0880042520.01 | 0.804902 | 1.728520e-49 | 9.020572e-47 |
| MsG0580028436.01 | MsG0880042760.01 | 0.807222 | 5.615813e-50 | 3.110465e-47 |
| MsG0580028436.01 | MsG0880042961.01 | 0.821553 | 3.797475e-53 | 3.099498e-50 |
| MsG0580028436.01 | MsG0880043480.01 | 0.837203 | 5.970386e-57 | 7.699184e-54 |
| MsG0580028436.01 | MsG0880043521.01 | 0.813160 | 2.945750e-51 | 1.909054e-48 |
| MsG0580028436.01 | MsG0880044782.01 | 0.810212 | 1.289380e-50 | 7.725721e-48 |
| MsG0580028436.01 | MsG0880045111.01 | 0.806376 | 8.477220e-50 | 4.593874e-47 |
| MsG0580028436.01 | MsG0880045145.01 | 0.820735 | 5.861585e-53 | 4.676184e-50 |
| MsG0580028436.01 | MsG0880045453.01 | 0.811068 | 8.420425e-51 | 5.161763e-48 |
| MsG0580028436.01 | MsG0880047470.01 | 0.803232 | 3.845876e-49 | 1.922394e-46 |
| MsG0580028436.01 | MsG0880047472.01 | 0.828766 | 7.490732e-55 | 7.516244e-52 |
| MsG0580028436.01 | MsG0880047473.01 | 0.842220 | 2.953306e-58 | 4.447104e-55 |
| MsG0280007414.01 | MsG0580028436.01 | 0.801603 | 8.331091e-49 | 3.994964e-46 |
| MsG0280007432.01 | MsG0580028436.01 | 0.811039 | 8.545479e-51 | 5.234518e-48 |
| MsG0280007452.01 | MsG0580028436.01 | 0.822340 | 2.496246e-53 | 2.083607e-50 |
| MsG0280007506.01 | MsG0580028436.01 | 0.830119 | 3.513237e-55 | 3.667480e-52 |
| MsG0280007955.01 | MsG0580028436.01 | 0.863517 | 2.352556e-64 | 7.151530e-61 |
| MsG0280008361.01 | MsG0580028436.01 | 0.826221 | 3.055100e-54 | 2.847477e-51 |
| MsG0280008377.01 | MsG0580028436.01 | 0.802943 | 4.412799e-49 | 2.189534e-46 |
| MsG0280008378.01 | MsG0580028436.01 | 0.826819 | 2.200783e-54 | 2.086533e-51 |
| MsG0280008457.01 | MsG0580028436.01 | 0.838957 | 2.111503e-57 | 2.873151e-54 |
| MsG0280009794.01 | MsG0580028436.01 | 0.806454 | 8.163431e-50 | 4.432794e-47 |
| MsG0280010109.01 | MsG0580028436.01 | 0.801600 | 8.339424e-49 | 3.998749e-46 |
| MsG0280010489.01 | MsG0580028436.01 | 0.825607 | 4.273955e-54 | 3.914525e-51 |
| MsG0280010491.01 | MsG0580028436.01 | 0.803127 | 4.043625e-49 | 2.015782e-46 |
| MsG0280010533.01 | MsG0580028436.01 | 0.809099 | 2.237342e-50 | 1.301795e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028436.01.T01 | MTR_5g071090 | 83.019 | 318 | 18 | 5 | 25 | 338 | 27 | 312 | 2.37e-171 | 478 |
| MsG0580028436.01.T01 | MTR_3g464300 | 35.294 | 391 | 163 | 12 | 26 | 335 | 27 | 408 | 3.03e-47 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 32 sgRNAs with CRISPR-Local
Find 58 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATGAGTGTGTAGATATT+TGG | 0.183054 | 5:-80494028 | MsG0580028436.01.T01:CDS |
| TGGTGTAGTTGCAAGGTTAA+TGG | 0.255423 | 5:-80495022 | MsG0580028436.01.T01:CDS |
| AAGAGTTTGTTTAAGGAAGT+TGG | 0.287665 | 5:-80494745 | MsG0580028436.01.T01:CDS |
| GGTGTAGTTGCAAGGTTAAT+GGG | 0.347018 | 5:-80495021 | MsG0580028436.01.T01:CDS |
| TGAAGAAGAGAGAAAAGTTA+AGG | 0.378603 | 5:-80494099 | MsG0580028436.01.T01:CDS |
| TCAAAATCAAAGACAGAAAC+AGG | 0.397845 | 5:+80494631 | None:intergenic |
| GAGCATGATGTTTCTGGAAC+AGG | 0.399353 | 5:-80494610 | MsG0580028436.01.T01:intron |
| AGTTGCAAGGTTAATGGGAT+TGG | 0.401363 | 5:-80495016 | MsG0580028436.01.T01:CDS |
| CAAGCTAGTTGATGATGAAT+TGG | 0.402114 | 5:-80493994 | MsG0580028436.01.T01:CDS |
| CAAAGGAAGAAGAAAAGAAA+AGG | 0.402477 | 5:-80494836 | MsG0580028436.01.T01:CDS |
| GAAATTATAGTTCTAGTAGT+AGG | 0.402687 | 5:+80495057 | None:intergenic |
| GTTAATGGGATTGGATTCAA+TGG | 0.432909 | 5:-80495007 | MsG0580028436.01.T01:CDS |
| ATTGAGAACAATTTGAATGA+AGG | 0.441642 | 5:-80494074 | MsG0580028436.01.T01:CDS |
| CTTCTTCTGGTGTAGTTGCA+AGG | 0.448678 | 5:-80495029 | MsG0580028436.01.T01:CDS |
| TTGTTTAAGGAAGTTGGAAA+TGG | 0.464241 | 5:-80494739 | MsG0580028436.01.T01:CDS |
| ATTATAGTTCTAGTAGTAGG+AGG | 0.474477 | 5:+80495060 | None:intergenic |
| TTTGTGATGTTGATATGAGT+TGG | 0.497412 | 5:-80494193 | MsG0580028436.01.T01:CDS |
| GTGAATTGCATGAAGTAAAG+AGG | 0.512937 | 5:-80493962 | MsG0580028436.01.T01:CDS |
| TTGCAATGTGTAAGTGAACT+TGG | 0.522297 | 5:+80494958 | None:intergenic |
| GGATTGGATTCAATGGAAGA+AGG | 0.529487 | 5:-80495000 | MsG0580028436.01.T01:CDS |
| CTAGTTGATGATGAATTGGT+TGG | 0.537429 | 5:-80493990 | MsG0580028436.01.T01:CDS |
| CAGAATGTTGAATAAAGAGC+TGG | 0.546875 | 5:+80494138 | None:intergenic |
| AGTAGAAAATTCAAGTCCAA+AGG | 0.548034 | 5:-80494853 | MsG0580028436.01.T01:CDS |
| AAAGGAAGAAGAAAAGAAAA+GGG | 0.548330 | 5:-80494835 | MsG0580028436.01.T01:CDS |
| GATTGGATTCAATGGAAGAA+GGG | 0.549935 | 5:-80494999 | MsG0580028436.01.T01:CDS |
| TTGGTGTTTAGCTTTGAAAG+TGG | 0.552499 | 5:-80494883 | MsG0580028436.01.T01:CDS |
| TTATAGTTCTAGTAGTAGGA+GGG | 0.559285 | 5:+80495061 | None:intergenic |
| TCAAGCAAATGAAAAGCTTG+TGG | 0.565993 | 5:+80494919 | None:intergenic |
| AACATGTTGTGTTGAAGAGA+AGG | 0.571785 | 5:-80494686 | MsG0580028436.01.T01:CDS |
| CTAAAGTTTGATGAAGATGA+TGG | 0.588538 | 5:+80495210 | None:intergenic |
| AGAGAAAAGGTGAATGATGA+TGG | 0.597704 | 5:-80494784 | MsG0580028436.01.T01:CDS |
| GTGTTTAGCTTTGAAAGTGG+AGG | 0.617135 | 5:-80494880 | MsG0580028436.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTATTTCCAAAAAATAAAA+AGG | + | Chr5:80494719-80494738 | None:intergenic | 15.0% |
| !! | CAAATTTAATACATGGAAAA+CGG | + | Chr5:80494853-80494872 | None:intergenic | 20.0% |
| !! | TAGTTAGCAAATTTAATACA+TGG | + | Chr5:80494860-80494879 | None:intergenic | 20.0% |
| !!! | ATTATTTCAACAAGCTTTTA+AGG | - | Chr5:80494639-80494658 | MsG0580028436.01.T01:CDS | 20.0% |
| !!! | GATCTTACCTTTTTATTTTT+TGG | - | Chr5:80494709-80494728 | MsG0580028436.01.T01:CDS | 20.0% |
| ! | AAAGGAAGAAGAAAAGAAAA+GGG | - | Chr5:80494271-80494290 | MsG0580028436.01.T01:intron | 25.0% |
| ! | AATTTAATGCATGTTTGGAT+TGG | - | Chr5:80494567-80494586 | MsG0580028436.01.T01:intron | 25.0% |
| ! | ATAAACAATTAGGTCATGTT+TGG | + | Chr5:80494780-80494799 | None:intergenic | 25.0% |
| ! | ATAATTTCTTCTTCTTCTTC+TGG | - | Chr5:80494064-80494083 | MsG0580028436.01.T01:CDS | 25.0% |
| ! | ATTGAGAACAATTTGAATGA+AGG | - | Chr5:80495032-80495051 | MsG0580028436.01.T01:CDS | 25.0% |
| ! | CACTATGTATCTAAATTCTA+AGG | + | Chr5:80494817-80494836 | None:intergenic | 25.0% |
| ! | TTCTCTAATCCTATGAAAAA+TGG | + | Chr5:80493975-80493994 | None:intergenic | 25.0% |
| ! | TTGTGTTTGCATAAACAATT+AGG | + | Chr5:80494790-80494809 | None:intergenic | 25.0% |
| !!! | GAAATTATAGTTCTAGTAGT+AGG | + | Chr5:80494052-80494071 | None:intergenic | 25.0% |
| !!! | TTTTGAGAAGAGTTTGTTTA+AGG | - | Chr5:80494354-80494373 | MsG0580028436.01.T01:intron | 25.0% |
| AAGGATCAAAGAAAAAAGAG+AGG | - | Chr5:80495051-80495070 | MsG0580028436.01.T01:CDS | 30.0% | |
| ACAATGAGTGTGTAGATATT+TGG | - | Chr5:80495078-80495097 | MsG0580028436.01.T01:CDS | 30.0% | |
| AGTAGAAAATTCAAGTCCAA+AGG | - | Chr5:80494253-80494272 | MsG0580028436.01.T01:intron | 30.0% | |
| CAAAGGAAGAAGAAAAGAAA+AGG | - | Chr5:80494270-80494289 | MsG0580028436.01.T01:intron | 30.0% | |
| CATATATAAACATGTTGCAG+AGG | - | Chr5:80494884-80494903 | MsG0580028436.01.T01:CDS | 30.0% | |
| CCAAACATGCATTAAATTTG+AGG | + | Chr5:80494565-80494584 | None:intergenic | 30.0% | |
| CCTCAAATTTAATGCATGTT+TGG | - | Chr5:80494562-80494581 | MsG0580028436.01.T01:intron | 30.0% | |
| CTAAAGTTTGATGAAGATGA+TGG | + | Chr5:80493899-80493918 | None:intergenic | 30.0% | |
| CTATTGAAATGCTCATAAGT+TGG | - | Chr5:80494610-80494629 | MsG0580028436.01.T01:intron | 30.0% | |
| GAAGAAAAACAAGAGAGAAA+AGG | - | Chr5:80494309-80494328 | MsG0580028436.01.T01:intron | 30.0% | |
| TCAAAATCAAAGACAGAAAC+AGG | + | Chr5:80494478-80494497 | None:intergenic | 30.0% | |
| TGAAGAAGAGAGAAAAGTTA+AGG | - | Chr5:80495007-80495026 | MsG0580028436.01.T01:CDS | 30.0% | |
| TTAAGGATAGCTTACGAAAA+CGG | - | Chr5:80494656-80494675 | MsG0580028436.01.T01:CDS | 30.0% | |
| TTGTTTAAGGAAGTTGGAAA+TGG | - | Chr5:80494367-80494386 | MsG0580028436.01.T01:intron | 30.0% | |
| TTTGTGATGTTGATATGAGT+TGG | - | Chr5:80494913-80494932 | MsG0580028436.01.T01:CDS | 30.0% | |
| ! | AAGAGTTTGTTTAAGGAAGT+TGG | - | Chr5:80494361-80494380 | MsG0580028436.01.T01:intron | 30.0% |
| ! | CTTTTCTTTTCTTCTTCCTT+TGG | + | Chr5:80494272-80494291 | None:intergenic | 30.0% |
| ! | GCTTGAAAATGAGAACTTTT+TGG | - | Chr5:80494204-80494223 | MsG0580028436.01.T01:CDS | 30.0% |
| !! | ATTATAGTTCTAGTAGTAGG+AGG | + | Chr5:80494049-80494068 | None:intergenic | 30.0% |
| !! | GTTTCACAACCATTTTTCAT+AGG | - | Chr5:80493963-80493982 | MsG0580028436.01.T01:CDS | 30.0% |
| !! | TTATAGTTCTAGTAGTAGGA+GGG | + | Chr5:80494048-80494067 | None:intergenic | 30.0% |
| AACATGTTGTGTTGAAGAGA+AGG | - | Chr5:80494420-80494439 | MsG0580028436.01.T01:intron | 35.0% | |
| AGAGAAAAGGTGAATGATGA+TGG | - | Chr5:80494322-80494341 | MsG0580028436.01.T01:intron | 35.0% | |
| CAGAATGTTGAATAAAGAGC+TGG | + | Chr5:80494971-80494990 | None:intergenic | 35.0% | |
| GATTGGATTCAATGGAAGAA+GGG | - | Chr5:80494107-80494126 | MsG0580028436.01.T01:CDS | 35.0% | |
| GTGAATTGCATGAAGTAAAG+AGG | - | Chr5:80495144-80495163 | MsG0580028436.01.T01:CDS | 35.0% | |
| GTTAATGGGATTGGATTCAA+TGG | - | Chr5:80494099-80494118 | MsG0580028436.01.T01:CDS | 35.0% | |
| TCAAGCAAATGAAAAGCTTG+TGG | + | Chr5:80494190-80494209 | None:intergenic | 35.0% | |
| TTGCAATGTGTAAGTGAACT+TGG | + | Chr5:80494151-80494170 | None:intergenic | 35.0% | |
| ! | GATTTTGAGCATGATGTTTC+TGG | - | Chr5:80494490-80494509 | MsG0580028436.01.T01:intron | 35.0% |
| !! | CAAGCTAGTTGATGATGAAT+TGG | - | Chr5:80495112-80495131 | MsG0580028436.01.T01:CDS | 35.0% |
| !! | CTAGTTGATGATGAATTGGT+TGG | - | Chr5:80495116-80495135 | MsG0580028436.01.T01:CDS | 35.0% |
| !! | TTGGTGTTTAGCTTTGAAAG+TGG | - | Chr5:80494223-80494242 | MsG0580028436.01.T01:intron | 35.0% |
| AGTTGCAAGGTTAATGGGAT+TGG | - | Chr5:80494090-80494109 | MsG0580028436.01.T01:CDS | 40.0% | |
| GGATTGGATTCAATGGAAGA+AGG | - | Chr5:80494106-80494125 | MsG0580028436.01.T01:CDS | 40.0% | |
| GGTGTAGTTGCAAGGTTAAT+GGG | - | Chr5:80494085-80494104 | MsG0580028436.01.T01:CDS | 40.0% | |
| TGGTGTAGTTGCAAGGTTAA+TGG | - | Chr5:80494084-80494103 | MsG0580028436.01.T01:CDS | 40.0% | |
| !! | GTGTTTAGCTTTGAAAGTGG+AGG | - | Chr5:80494226-80494245 | MsG0580028436.01.T01:intron | 40.0% |
| AGCTCAAAAACTGTTGCTGC+AGG | - | Chr5:80493938-80493957 | MsG0580028436.01.T01:CDS | 45.0% | |
| CTTCTTCTGGTGTAGTTGCA+AGG | - | Chr5:80494077-80494096 | MsG0580028436.01.T01:CDS | 45.0% | |
| GCTCAAAAACTGTTGCTGCA+GGG | - | Chr5:80493939-80493958 | MsG0580028436.01.T01:CDS | 45.0% | |
| !! | AGCTGGTCATTTTCAAGCAC+TGG | + | Chr5:80494954-80494973 | None:intergenic | 45.0% |
| !! | GAGCATGATGTTTCTGGAAC+AGG | - | Chr5:80494496-80494515 | MsG0580028436.01.T01:intron | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 80493863 | 80495265 | 80493863 | ID=MsG0580028436.01;Name=MsG0580028436.01 |
| Chr5 | mRNA | 80493863 | 80495265 | 80493863 | ID=MsG0580028436.01.T01;Parent=MsG0580028436.01;Name=MsG0580028436.01.T01;_AED=0.23;_eAED=0.23;_QI=0|0|0|1|1|1|2|0|338 |
| Chr5 | exon | 80494611 | 80495265 | 80494611 | ID=MsG0580028436.01.T01:exon:23753;Parent=MsG0580028436.01.T01 |
| Chr5 | exon | 80493863 | 80494224 | 80493863 | ID=MsG0580028436.01.T01:exon:23752;Parent=MsG0580028436.01.T01 |
| Chr5 | CDS | 80494611 | 80495265 | 80494611 | ID=MsG0580028436.01.T01:cds;Parent=MsG0580028436.01.T01 |
| Chr5 | CDS | 80493863 | 80494224 | 80493863 | ID=MsG0580028436.01.T01:cds;Parent=MsG0580028436.01.T01 |
| Gene Sequence |
| Protein sequence |
