Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002548.01.T01 | RHN78869.1 | 89.821 | 560 | 33 | 1 | 1 | 560 | 12 | 547 | 0 | 1006 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002548.01.T01 | O82175 | 39.513 | 534 | 267 | 14 | 36 | 559 | 307 | 794 | 1.54E-109 | 348 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002548.01.T01 | A0A396JKV6 | 89.821 | 560 | 33 | 1 | 1 | 560 | 12 | 547 | 0.0 | 1006 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0180002548.01.T01 | TR | SET |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180002101.01 | MsG0180002548.01 | 0.850780 | 1.360637e-60 | 2.695217e-57 |
| MsG0180002548.01 | MsG0180003361.01 | 0.812604 | 3.899904e-51 | 2.490449e-48 |
| MsG0180002548.01 | MsG0180003920.01 | 0.803188 | 3.927937e-49 | 1.961254e-46 |
| MsG0180002548.01 | MsG0280011014.01 | 0.806149 | 9.465504e-50 | 5.099875e-47 |
| MsG0180002548.01 | MsG0380011496.01 | 0.825764 | 3.924068e-54 | 3.610172e-51 |
| MsG0180002548.01 | MsG0380011501.01 | 0.835504 | 1.614618e-56 | 1.978364e-53 |
| MsG0180002548.01 | MsG0580026089.01 | 0.808418 | 3.127319e-50 | 1.787238e-47 |
| MsG0180002548.01 | MsG0580026610.01 | 0.811123 | 8.194384e-51 | 5.030365e-48 |
| MsG0180002548.01 | MsG0580027925.01 | 0.836733 | 7.872185e-57 | 1.000892e-53 |
| MsG0180002548.01 | MsG0780036147.01 | 0.822754 | 2.000335e-53 | 1.689486e-50 |
| MsG0180002548.01 | MsG0780038424.01 | 0.820592 | 6.322352e-53 | 5.023502e-50 |
| MsG0180002548.01 | MsG0780038648.01 | 0.808387 | 3.175566e-50 | 1.813361e-47 |
| MsG0180002548.01 | MsG0880044782.01 | 0.801898 | 7.244369e-49 | 3.500282e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002548.01.T01 | MTR_1g048950 | 89.785 | 558 | 33 | 1 | 3 | 560 | 1 | 534 | 0.0 | 1003 |
| MsG0180002548.01.T01 | MTR_5g013420 | 39.216 | 561 | 263 | 11 | 30 | 559 | 576 | 1089 | 1.39e-112 | 360 |
| MsG0180002548.01.T01 | MTR_5g013420 | 39.216 | 561 | 263 | 11 | 30 | 559 | 576 | 1089 | 6.28e-112 | 358 |
| MsG0180002548.01.T01 | MTR_4g010830 | 38.241 | 557 | 266 | 11 | 34 | 559 | 471 | 980 | 9.90e-108 | 345 |
| MsG0180002548.01.T01 | MTR_4g010550 | 38.224 | 518 | 242 | 11 | 58 | 559 | 9 | 464 | 6.76e-98 | 305 |
| MsG0180002548.01.T01 | MTR_7g088370 | 32.117 | 548 | 297 | 16 | 36 | 556 | 203 | 702 | 3.77e-72 | 244 |
| MsG0180002548.01.T01 | MTR_8g042750 | 31.551 | 561 | 302 | 11 | 36 | 556 | 167 | 685 | 1.88e-71 | 242 |
| MsG0180002548.01.T01 | MTR_3g011440 | 33.010 | 515 | 260 | 16 | 87 | 558 | 191 | 663 | 4.44e-71 | 241 |
| MsG0180002548.01.T01 | MTR_6g061270 | 31.227 | 554 | 285 | 16 | 58 | 559 | 185 | 694 | 2.40e-68 | 234 |
| MsG0180002548.01.T01 | MTR_6g061200 | 32.657 | 493 | 268 | 13 | 89 | 559 | 215 | 665 | 4.76e-68 | 233 |
| MsG0180002548.01.T01 | MTR_7g084090 | 31.179 | 526 | 260 | 14 | 90 | 559 | 278 | 757 | 6.75e-68 | 234 |
| MsG0180002548.01.T01 | MTR_8g070075 | 31.062 | 499 | 271 | 12 | 69 | 533 | 289 | 748 | 2.84e-65 | 227 |
| MsG0180002548.01.T01 | MTR_7g450730 | 31.349 | 571 | 247 | 17 | 11 | 559 | 58 | 505 | 6.78e-65 | 220 |
| MsG0180002548.01.T01 | MTR_1g035420 | 31.758 | 529 | 279 | 14 | 46 | 533 | 157 | 644 | 1.36e-64 | 223 |
| MsG0180002548.01.T01 | MTR_8g070070 | 32.794 | 494 | 257 | 14 | 75 | 533 | 302 | 755 | 6.02e-63 | 221 |
| MsG0180002548.01.T01 | MTR_7g445710 | 30.612 | 588 | 251 | 19 | 20 | 559 | 65 | 543 | 5.11e-61 | 211 |
| MsG0180002548.01.T01 | MTR_8g071030 | 31.746 | 504 | 267 | 15 | 66 | 533 | 273 | 735 | 3.83e-60 | 213 |
| MsG0180002548.01.T01 | MTR_6g044690 | 32.292 | 480 | 242 | 13 | 90 | 533 | 130 | 562 | 3.71e-59 | 206 |
| MsG0180002548.01.T01 | MTR_7g445530 | 30.645 | 558 | 235 | 17 | 20 | 534 | 65 | 513 | 2.74e-58 | 202 |
| MsG0180002548.01.T01 | MTR_1g035400 | 31.164 | 507 | 261 | 17 | 68 | 533 | 104 | 563 | 3.76e-54 | 193 |
| MsG0180002548.01.T01 | MTR_7g084090 | 31.915 | 376 | 194 | 9 | 90 | 447 | 278 | 609 | 2.17e-49 | 181 |
| MsG0180002548.01.T01 | MTR_0376s0030 | 28.889 | 495 | 270 | 15 | 90 | 549 | 130 | 577 | 5.33e-49 | 179 |
| MsG0180002548.01.T01 | MTR_6g043960 | 30.208 | 480 | 231 | 16 | 90 | 533 | 69 | 480 | 5.93e-49 | 177 |
| MsG0180002548.01.T01 | MTR_2g054460 | 29.228 | 479 | 209 | 15 | 90 | 533 | 79 | 462 | 2.02e-43 | 161 |
| MsG0180002548.01.T01 | MTR_7g052480 | 32.362 | 309 | 161 | 9 | 292 | 559 | 255 | 556 | 1.60e-40 | 155 |
| MsG0180002548.01.T01 | MTR_8g078490 | 30.368 | 326 | 173 | 9 | 279 | 559 | 937 | 1253 | 2.48e-35 | 142 |
| MsG0180002548.01.T01 | MTR_5g018850 | 31.778 | 343 | 178 | 10 | 270 | 559 | 1168 | 1507 | 7.35e-35 | 141 |
| MsG0180002548.01.T01 | MTR_8g078505 | 31.973 | 294 | 155 | 9 | 301 | 554 | 245 | 533 | 6.60e-34 | 135 |
| MsG0180002548.01.T01 | MTR_7g445600 | 45.736 | 129 | 58 | 1 | 406 | 534 | 240 | 356 | 5.43e-33 | 129 |
| MsG0180002548.01.T01 | MTR_7g445600 | 34.225 | 187 | 99 | 8 | 20 | 202 | 61 | 227 | 2.55e-15 | 78.2 |
| MsG0180002548.01.T01 | MTR_4g132610 | 38.308 | 201 | 103 | 6 | 375 | 559 | 852 | 1047 | 2.71e-31 | 130 |
| MsG0180002548.01.T01 | MTR_1g069570 | 29.524 | 315 | 155 | 11 | 306 | 554 | 428 | 741 | 9.72e-27 | 115 |
| MsG0180002548.01.T01 | MTR_1g080340 | 29.352 | 293 | 141 | 10 | 306 | 533 | 267 | 558 | 9.77e-26 | 112 |
| MsG0180002548.01.T01 | MTR_7g098390 | 26.904 | 394 | 194 | 15 | 246 | 554 | 313 | 697 | 8.72e-23 | 103 |
| MsG0180002548.01.T01 | MTR_1g098000 | 37.143 | 175 | 82 | 7 | 394 | 555 | 72 | 231 | 6.25e-20 | 93.6 |
| MsG0180002548.01.T01 | MTR_1g069570 | 28.800 | 250 | 114 | 9 | 306 | 492 | 428 | 676 | 1.15e-19 | 93.2 |
| MsG0180002548.01.T01 | MTR_1g098370 | 36.571 | 175 | 83 | 7 | 394 | 555 | 75 | 234 | 3.49e-19 | 91.3 |
| MsG0180002548.01.T01 | MTR_6g027690 | 30.263 | 228 | 119 | 10 | 349 | 558 | 214 | 419 | 6.51e-19 | 89.7 |
| MsG0180002548.01.T01 | MTR_0071s0100 | 35.758 | 165 | 94 | 5 | 395 | 556 | 191 | 346 | 1.67e-16 | 82.0 |
| MsG0180002548.01.T01 | MTR_3g088625 | 33.133 | 166 | 99 | 4 | 398 | 558 | 1200 | 1358 | 2.92e-16 | 83.2 |
| MsG0180002548.01.T01 | MTR_3g088625 | 33.133 | 166 | 99 | 4 | 398 | 558 | 1306 | 1464 | 3.79e-16 | 82.8 |
| MsG0180002548.01.T01 | MTR_6g059310 | 29.143 | 175 | 98 | 4 | 391 | 554 | 87 | 246 | 1.03e-14 | 75.9 |
| MsG0180002548.01.T01 | MTR_6g059310 | 29.143 | 175 | 98 | 4 | 391 | 554 | 87 | 246 | 1.21e-14 | 75.9 |
| MsG0180002548.01.T01 | MTR_7g445810 | 33.333 | 195 | 105 | 9 | 35 | 227 | 94 | 265 | 6.98e-14 | 72.4 |
| MsG0180002548.01.T01 | MTR_1g012910 | 36.242 | 149 | 73 | 6 | 418 | 554 | 528 | 666 | 1.32e-13 | 74.3 |
| MsG0180002548.01.T01 | MTR_1g012910 | 36.242 | 149 | 73 | 6 | 418 | 554 | 365 | 503 | 1.89e-13 | 73.2 |
| MsG0180002548.01.T01 | MTR_1g012890 | 34.228 | 149 | 76 | 6 | 418 | 554 | 225 | 363 | 6.96e-13 | 70.9 |
| MsG0180002548.01.T01 | MTR_1g064770 | 47.541 | 61 | 31 | 1 | 391 | 450 | 30 | 90 | 5.73e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002548.01.T01 | AT2G35160 | 39.513 | 534 | 267 | 14 | 36 | 559 | 271 | 758 | 5.44e-111 | 348 |
| MsG0180002548.01.T01 | AT2G35160 | 39.513 | 534 | 267 | 14 | 36 | 559 | 307 | 794 | 1.57e-110 | 348 |
| MsG0180002548.01.T01 | AT2G35160 | 39.513 | 534 | 267 | 14 | 36 | 559 | 307 | 794 | 1.57e-110 | 348 |
| MsG0180002548.01.T01 | AT2G35160 | 39.513 | 534 | 267 | 14 | 36 | 559 | 307 | 794 | 1.57e-110 | 348 |
| MsG0180002548.01.T01 | AT2G35160 | 39.513 | 534 | 267 | 14 | 36 | 559 | 307 | 794 | 1.57e-110 | 348 |
| MsG0180002548.01.T01 | AT2G22740 | 34.804 | 612 | 292 | 16 | 5 | 559 | 229 | 790 | 1.10e-93 | 303 |
| MsG0180002548.01.T01 | AT2G22740 | 34.804 | 612 | 292 | 16 | 5 | 559 | 229 | 790 | 1.10e-93 | 303 |
| MsG0180002548.01.T01 | AT1G73100 | 33.463 | 514 | 253 | 15 | 87 | 558 | 202 | 668 | 3.94e-72 | 243 |
| MsG0180002548.01.T01 | AT5G04940 | 34.180 | 512 | 250 | 16 | 87 | 558 | 205 | 669 | 8.31e-71 | 240 |
| MsG0180002548.01.T01 | AT5G04940 | 34.180 | 512 | 250 | 16 | 87 | 558 | 205 | 669 | 8.31e-71 | 240 |
| MsG0180002548.01.T01 | AT5G13960 | 31.985 | 519 | 264 | 18 | 90 | 559 | 12 | 490 | 4.49e-62 | 212 |
| MsG0180002548.01.T01 | AT2G33290 | 30.474 | 548 | 301 | 14 | 36 | 549 | 149 | 650 | 5.79e-62 | 216 |
| MsG0180002548.01.T01 | AT2G33290 | 30.474 | 548 | 301 | 14 | 36 | 549 | 149 | 650 | 5.79e-62 | 216 |
| MsG0180002548.01.T01 | AT2G33290 | 30.474 | 548 | 301 | 14 | 36 | 549 | 149 | 650 | 5.79e-62 | 216 |
| MsG0180002548.01.T01 | AT2G33290 | 30.474 | 548 | 301 | 14 | 36 | 549 | 149 | 650 | 5.79e-62 | 216 |
| MsG0180002548.01.T01 | AT5G13960 | 31.699 | 571 | 291 | 22 | 38 | 559 | 104 | 624 | 1.39e-61 | 214 |
| MsG0180002548.01.T01 | AT4G13460 | 30.037 | 536 | 293 | 15 | 36 | 533 | 145 | 636 | 4.07e-60 | 211 |
| MsG0180002548.01.T01 | AT4G13460 | 30.037 | 536 | 293 | 15 | 36 | 533 | 145 | 636 | 4.07e-60 | 211 |
| MsG0180002548.01.T01 | AT1G17770 | 29.787 | 517 | 273 | 16 | 87 | 558 | 221 | 692 | 2.20e-55 | 198 |
| MsG0180002548.01.T01 | AT2G24740 | 30.648 | 509 | 258 | 16 | 87 | 558 | 304 | 754 | 4.90e-52 | 190 |
| MsG0180002548.01.T01 | AT2G23740 | 33.968 | 315 | 160 | 11 | 282 | 556 | 1066 | 1372 | 1.71e-36 | 145 |
| MsG0180002548.01.T01 | AT2G23740 | 33.968 | 315 | 160 | 11 | 282 | 556 | 1073 | 1379 | 1.73e-36 | 145 |
| MsG0180002548.01.T01 | AT2G23740 | 33.968 | 315 | 160 | 11 | 282 | 556 | 1073 | 1379 | 1.73e-36 | 145 |
| MsG0180002548.01.T01 | AT2G23740 | 33.968 | 315 | 160 | 11 | 282 | 556 | 1073 | 1379 | 1.73e-36 | 145 |
| MsG0180002548.01.T01 | AT5G47150 | 38.889 | 216 | 121 | 4 | 36 | 249 | 118 | 324 | 2.40e-30 | 121 |
| MsG0180002548.01.T01 | AT5G47160 | 35.833 | 240 | 134 | 4 | 12 | 245 | 182 | 407 | 1.88e-27 | 115 |
| MsG0180002548.01.T01 | AT5G47160 | 35.833 | 240 | 134 | 4 | 12 | 245 | 182 | 407 | 1.88e-27 | 115 |
| MsG0180002548.01.T01 | AT5G47160 | 35.833 | 240 | 134 | 4 | 12 | 245 | 182 | 407 | 1.88e-27 | 115 |
| MsG0180002548.01.T01 | AT3G04380 | 26.107 | 429 | 217 | 16 | 203 | 554 | 36 | 441 | 2.08e-25 | 110 |
| MsG0180002548.01.T01 | AT3G04380 | 26.107 | 429 | 217 | 16 | 203 | 554 | 52 | 457 | 2.65e-25 | 109 |
| MsG0180002548.01.T01 | AT3G04380 | 26.107 | 429 | 217 | 16 | 203 | 554 | 52 | 457 | 3.38e-25 | 109 |
| MsG0180002548.01.T01 | AT3G04380 | 27.711 | 332 | 173 | 10 | 289 | 554 | 100 | 430 | 9.36e-25 | 107 |
| MsG0180002548.01.T01 | AT3G04380 | 27.711 | 332 | 173 | 10 | 289 | 554 | 84 | 414 | 1.03e-24 | 107 |
| MsG0180002548.01.T01 | AT3G04380 | 27.711 | 332 | 173 | 10 | 289 | 554 | 100 | 430 | 1.42e-24 | 107 |
| MsG0180002548.01.T01 | AT2G23740 | 33.200 | 250 | 120 | 10 | 282 | 492 | 1073 | 1314 | 2.96e-24 | 108 |
| MsG0180002548.01.T01 | AT2G23740 | 33.200 | 250 | 120 | 10 | 282 | 492 | 1073 | 1314 | 2.96e-24 | 108 |
| MsG0180002548.01.T01 | AT1G04050 | 34.595 | 185 | 107 | 5 | 387 | 557 | 537 | 721 | 6.43e-21 | 97.4 |
| MsG0180002548.01.T01 | AT1G04050 | 34.595 | 185 | 107 | 5 | 387 | 557 | 537 | 721 | 6.43e-21 | 97.4 |
| MsG0180002548.01.T01 | AT1G04050 | 35.165 | 182 | 104 | 5 | 387 | 554 | 433 | 614 | 7.78e-21 | 97.1 |
| MsG0180002548.01.T01 | AT3G03750 | 34.783 | 184 | 98 | 6 | 394 | 558 | 169 | 349 | 9.24e-21 | 94.4 |
| MsG0180002548.01.T01 | AT5G43990 | 35.519 | 183 | 101 | 7 | 387 | 554 | 501 | 681 | 4.21e-20 | 94.7 |
| MsG0180002548.01.T01 | AT5G43990 | 35.519 | 183 | 101 | 7 | 387 | 554 | 501 | 681 | 4.21e-20 | 94.7 |
| MsG0180002548.01.T01 | AT5G43990 | 35.519 | 183 | 101 | 7 | 387 | 554 | 501 | 681 | 4.21e-20 | 94.7 |
| MsG0180002548.01.T01 | AT5G43990 | 35.519 | 183 | 101 | 7 | 387 | 554 | 501 | 681 | 4.21e-20 | 94.7 |
| MsG0180002548.01.T01 | AT5G43990 | 35.519 | 183 | 101 | 7 | 387 | 554 | 524 | 704 | 4.31e-20 | 94.7 |
| MsG0180002548.01.T01 | AT5G43990 | 35.519 | 183 | 101 | 7 | 387 | 554 | 524 | 704 | 4.31e-20 | 94.7 |
| MsG0180002548.01.T01 | AT5G43990 | 35.519 | 183 | 101 | 7 | 387 | 554 | 521 | 701 | 4.49e-20 | 94.7 |
| MsG0180002548.01.T01 | AT5G43990 | 35.519 | 183 | 101 | 7 | 387 | 554 | 521 | 701 | 4.49e-20 | 94.7 |
| MsG0180002548.01.T01 | AT5G43990 | 35.519 | 183 | 101 | 7 | 387 | 554 | 521 | 701 | 4.49e-20 | 94.7 |
| MsG0180002548.01.T01 | AT5G43990 | 35.519 | 183 | 101 | 7 | 387 | 554 | 521 | 701 | 4.49e-20 | 94.7 |
| MsG0180002548.01.T01 | AT5G43990 | 35.519 | 183 | 101 | 7 | 387 | 554 | 544 | 724 | 4.51e-20 | 94.7 |
| MsG0180002548.01.T01 | AT5G43990 | 35.519 | 183 | 101 | 7 | 387 | 554 | 544 | 724 | 4.51e-20 | 94.7 |
| MsG0180002548.01.T01 | AT5G43990 | 35.519 | 183 | 101 | 7 | 387 | 554 | 432 | 612 | 4.84e-20 | 94.4 |
| MsG0180002548.01.T01 | AT5G43990 | 35.519 | 183 | 101 | 7 | 387 | 554 | 452 | 632 | 5.37e-20 | 94.4 |
| MsG0180002548.01.T01 | AT5G43990 | 35.519 | 183 | 101 | 7 | 387 | 554 | 452 | 632 | 5.37e-20 | 94.4 |
| MsG0180002548.01.T01 | AT5G43990 | 35.519 | 183 | 101 | 7 | 387 | 554 | 452 | 632 | 5.37e-20 | 94.4 |
| MsG0180002548.01.T01 | AT5G43990 | 35.519 | 183 | 101 | 7 | 387 | 554 | 452 | 632 | 5.37e-20 | 94.4 |
| MsG0180002548.01.T01 | AT1G77300 | 31.098 | 164 | 105 | 3 | 398 | 558 | 1008 | 1166 | 3.03e-16 | 83.2 |
| MsG0180002548.01.T01 | AT1G77300 | 31.098 | 164 | 105 | 3 | 398 | 558 | 1008 | 1166 | 3.33e-16 | 83.2 |
| MsG0180002548.01.T01 | AT3G03750 | 33.708 | 178 | 92 | 7 | 394 | 558 | 169 | 333 | 1.97e-15 | 78.2 |
| MsG0180002548.01.T01 | AT4G30860 | 34.320 | 169 | 95 | 6 | 395 | 558 | 307 | 464 | 2.01e-15 | 79.3 |
| MsG0180002548.01.T01 | AT1G76710 | 32.558 | 172 | 96 | 7 | 394 | 556 | 66 | 226 | 9.72e-15 | 77.4 |
| MsG0180002548.01.T01 | AT1G76710 | 32.558 | 172 | 96 | 7 | 394 | 556 | 66 | 226 | 9.72e-15 | 77.4 |
| MsG0180002548.01.T01 | AT1G76710 | 32.558 | 172 | 96 | 7 | 394 | 556 | 66 | 226 | 1.14e-14 | 77.0 |
| MsG0180002548.01.T01 | AT1G76710 | 32.558 | 172 | 96 | 7 | 394 | 556 | 66 | 226 | 1.17e-14 | 77.0 |
| MsG0180002548.01.T01 | AT3G59960 | 32.335 | 167 | 91 | 4 | 401 | 558 | 96 | 249 | 1.66e-11 | 65.9 |
| MsG0180002548.01.T01 | AT3G59960 | 32.335 | 167 | 91 | 4 | 401 | 558 | 96 | 249 | 1.66e-11 | 65.9 |
| MsG0180002548.01.T01 | AT3G59960 | 32.335 | 167 | 91 | 4 | 401 | 558 | 96 | 249 | 1.66e-11 | 65.9 |
| MsG0180002548.01.T01 | AT5G42400 | 29.252 | 147 | 90 | 4 | 417 | 558 | 1250 | 1387 | 2.22e-11 | 67.4 |
| MsG0180002548.01.T01 | AT5G42400 | 29.252 | 147 | 90 | 4 | 417 | 558 | 1250 | 1387 | 2.22e-11 | 67.4 |
| MsG0180002548.01.T01 | AT5G42400 | 29.252 | 147 | 90 | 4 | 417 | 558 | 1250 | 1387 | 2.22e-11 | 67.4 |
| MsG0180002548.01.T01 | AT5G42400 | 29.252 | 147 | 90 | 4 | 417 | 558 | 1250 | 1387 | 2.22e-11 | 67.4 |
| MsG0180002548.01.T01 | AT5G42400 | 29.252 | 147 | 90 | 4 | 417 | 558 | 1250 | 1387 | 2.22e-11 | 67.4 |
| MsG0180002548.01.T01 | AT5G42400 | 29.252 | 147 | 90 | 4 | 417 | 558 | 1250 | 1387 | 2.22e-11 | 67.4 |
| MsG0180002548.01.T01 | AT5G42400 | 29.252 | 147 | 90 | 4 | 417 | 558 | 1250 | 1387 | 2.22e-11 | 67.4 |
| MsG0180002548.01.T01 | AT5G42400 | 29.252 | 147 | 90 | 4 | 417 | 558 | 1250 | 1387 | 2.22e-11 | 67.4 |
| MsG0180002548.01.T01 | AT3G59960 | 32.335 | 167 | 91 | 4 | 401 | 558 | 96 | 249 | 4.10e-11 | 65.1 |
Find 129 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCATGTGGTATTGATTATT+TGG | 0.059117 | 1:-40208222 | MsG0180002548.01.T01:CDS |
| TACATGCCCTATTCTCTTTC+CGG | 0.210201 | 1:+40208316 | None:intergenic |
| TGATGACTATATAATTAATA+TGG | 0.212544 | 1:-40207190 | MsG0180002548.01.T01:CDS |
| GCAACGCCGTCCCTTATATT+AGG | 0.219127 | 1:+40208095 | None:intergenic |
| ATGCAAAGTTCAAAATCTTT+TGG | 0.219974 | 1:-40208572 | MsG0180002548.01.T01:CDS |
| TAAAATTGAAAGCAAAATTA+AGG | 0.224504 | 1:-40208391 | MsG0180002548.01.T01:CDS |
| CATATATGATGGGTTGTATT+TGG | 0.270041 | 1:-40207931 | MsG0180002548.01.T01:CDS |
| AGGGCCGAACTTATTGTAAT+TGG | 0.278875 | 1:-40208260 | MsG0180002548.01.T01:CDS |
| CTTCAGAATTGTGTCTCTTC+TGG | 0.280628 | 1:+40207793 | None:intergenic |
| GGTATCTCCACATAGCTTAT+AGG | 0.280802 | 1:+40207612 | None:intergenic |
| TCCTGTTAGGGTTATATTGC+AGG | 0.288637 | 1:-40208009 | MsG0180002548.01.T01:CDS |
| TATATAAAGGATGATTTCAT+AGG | 0.299705 | 1:+40207423 | None:intergenic |
| GTTTGTGCTTAAGAAAATTC+AGG | 0.305686 | 1:-40207859 | MsG0180002548.01.T01:CDS |
| GTTCGGCCCTATATTGAAAT+TGG | 0.307938 | 1:+40208273 | None:intergenic |
| TGTTCGAATCAATGATATTT+CGG | 0.328396 | 1:-40207670 | MsG0180002548.01.T01:CDS |
| ACTAGGTAACCGAAGGGTTT+AGG | 0.329178 | 1:+40207591 | None:intergenic |
| TGTTTCCCCTCGAGATGTTA+TGG | 0.333335 | 1:-40207823 | MsG0180002548.01.T01:CDS |
| AGCATCGAACGATTCATCTT+TGG | 0.337178 | 1:+40207555 | None:intergenic |
| GTATTGATTATTTGGGTAAA+GGG | 0.337355 | 1:-40208214 | MsG0180002548.01.T01:CDS |
| TGCGCCTCATGATCAGAAAT+TGG | 0.342218 | 1:-40208075 | MsG0180002548.01.T01:CDS |
| ACTCGAGTAAGAGGACAATT+TGG | 0.352436 | 1:-40207897 | MsG0180002548.01.T01:CDS |
| TGGTGACCAATTTCAATATA+GGG | 0.354159 | 1:-40208279 | MsG0180002548.01.T01:CDS |
| CGCGCGGAAATCTTGCTTTG+TGG | 0.366478 | 1:-40208052 | MsG0180002548.01.T01:CDS |
| ATGGTGGTAACCCTAATATA+AGG | 0.370183 | 1:-40208106 | MsG0180002548.01.T01:CDS |
| ACCTGCAATATAACCCTAAC+AGG | 0.380684 | 1:+40208008 | None:intergenic |
| GGGTAAAGGGGAGGGTTCTT+TGG | 0.380696 | 1:-40208201 | MsG0180002548.01.T01:CDS |
| CAACGCCGTCCCTTATATTA+GGG | 0.380827 | 1:+40208096 | None:intergenic |
| AATTTGCTACTGTGGTTCAT+TGG | 0.383046 | 1:-40206849 | MsG0180002548.01.T01:CDS |
| TGAATGCGGGGAGTCCTGTT+AGG | 0.386175 | 1:-40208022 | MsG0180002548.01.T01:CDS |
| TCATGTGGTATTGATTATTT+GGG | 0.386491 | 1:-40208221 | MsG0180002548.01.T01:CDS |
| TCCGGTTGTTTGCTTTATGA+AGG | 0.402336 | 1:-40208131 | MsG0180002548.01.T01:CDS |
| TCTTATTCATACATATATGA+TGG | 0.403540 | 1:-40207942 | MsG0180002548.01.T01:CDS |
| TTGGTGACCAATTTCAATAT+AGG | 0.405625 | 1:-40208280 | MsG0180002548.01.T01:CDS |
| GCGAATGTTATGAAGTCTTC+CGG | 0.408931 | 1:-40208149 | MsG0180002548.01.T01:CDS |
| GTTTCCCCTCGAGATGTTAT+GGG | 0.409974 | 1:-40207822 | MsG0180002548.01.T01:CDS |
| AAAATTGAAAGCAAAATTAA+GGG | 0.414139 | 1:-40208390 | MsG0180002548.01.T01:CDS |
| AGGGCTACACTCATATATAA+AGG | 0.419377 | 1:+40207410 | None:intergenic |
| CTTCATAAACCTTGTAGCTT+CGG | 0.427305 | 1:+40208361 | None:intergenic |
| ACATCTTTCACAACTAGGTT+AGG | 0.431941 | 1:+40206998 | None:intergenic |
| GGTATTGATTATTTGGGTAA+AGG | 0.432188 | 1:-40208215 | MsG0180002548.01.T01:CDS |
| ATAGGTGTCACCACACGAAT+AGG | 0.433162 | 1:+40207630 | None:intergenic |
| CAAAATGTTGTTTGCTACAA+AGG | 0.440548 | 1:-40206942 | MsG0180002548.01.T01:CDS |
| TCAATGCAGCTCTTGCTAGA+AGG | 0.440794 | 1:+40207070 | None:intergenic |
| GAGCTCACACACAAAGCTTC+CGG | 0.447492 | 1:+40207266 | None:intergenic |
| GAAAACACCGGAAAGAGAAT+AGG | 0.449177 | 1:-40208323 | MsG0180002548.01.T01:CDS |
| AAAACACCGGAAAGAGAATA+GGG | 0.465297 | 1:-40208322 | MsG0180002548.01.T01:CDS |
| GATTATTTGGGTAAAGGGGA+GGG | 0.470006 | 1:-40208209 | MsG0180002548.01.T01:CDS |
| AAGAGAATAGGGCATGTAGA+TGG | 0.472138 | 1:-40208311 | MsG0180002548.01.T01:CDS |
| AACAATGTGACTCGAGTAAG+AGG | 0.478502 | 1:-40207906 | MsG0180002548.01.T01:CDS |
| ACCTTCATAAAGCAAACAAC+CGG | 0.484004 | 1:+40208130 | None:intergenic |
| TTATGAAGGCGAAACGTCAA+TGG | 0.484134 | 1:-40208346 | MsG0180002548.01.T01:CDS |
| GATGACTATATAATTAATAT+GGG | 0.486512 | 1:-40207189 | MsG0180002548.01.T01:intron |
| TTCAAGTTGGAACTGAATAC+CGG | 0.487311 | 1:+40207344 | None:intergenic |
| TACCACATGAGTGTTGTTGA+TGG | 0.495002 | 1:+40208234 | None:intergenic |
| GAGACCAATTACAATAAGTT+CGG | 0.496001 | 1:+40208256 | None:intergenic |
| TAAGAAAATTCAGGACCAAC+CGG | 0.497017 | 1:-40207850 | MsG0180002548.01.T01:CDS |
| CTTATTCATACATATATGAT+GGG | 0.498680 | 1:-40207941 | MsG0180002548.01.T01:CDS |
| ATTGATTCGAACAACATCCT+TGG | 0.502629 | 1:+40207680 | None:intergenic |
| AGCTTTGTGTGTGAGCTCAT+TGG | 0.503294 | 1:-40207261 | MsG0180002548.01.T01:CDS |
| AAGATGAATCGTTCGATGCT+AGG | 0.504922 | 1:-40207552 | MsG0180002548.01.T01:CDS |
| ACATAACATCTTTCACAACT+AGG | 0.508844 | 1:+40206993 | None:intergenic |
| ATCTTCAAAACAAAATTGAA+AGG | 0.515011 | 1:-40207321 | MsG0180002548.01.T01:CDS |
| GGGCTTTAGCCGAAGCTACA+AGG | 0.516710 | 1:-40208370 | MsG0180002548.01.T01:CDS |
| ATGGACAAATCTACATTTGA+AGG | 0.517049 | 1:-40206820 | None:intergenic |
| ATATAAAGGATGATTTCATA+GGG | 0.519667 | 1:+40207424 | None:intergenic |
| CAAAACAAAATTGAAAGGGT+GGG | 0.521314 | 1:-40207316 | MsG0180002548.01.T01:CDS |
| TTGGGAGAAAGCGTGAAGAA+TGG | 0.523029 | 1:-40208553 | MsG0180002548.01.T01:CDS |
| GCAACTAGACATGGAAACAT+TGG | 0.525331 | 1:-40207046 | MsG0180002548.01.T01:CDS |
| ACACGCTCTTTCATTCCATC+CGG | 0.526296 | 1:-40207285 | MsG0180002548.01.T01:CDS |
| TGGTGGTAACCCTAATATAA+GGG | 0.526528 | 1:-40208105 | MsG0180002548.01.T01:CDS |
| TCAAAACAAAATTGAAAGGG+TGG | 0.528168 | 1:-40207317 | MsG0180002548.01.T01:CDS |
| TGATTATTTGGGTAAAGGGG+AGG | 0.530479 | 1:-40208210 | MsG0180002548.01.T01:CDS |
| AAACATTCTTTGGGAGAACA+TGG | 0.531170 | 1:+40207769 | None:intergenic |
| CATGTAGATGGAATTGAAGT+TGG | 0.532327 | 1:-40208299 | MsG0180002548.01.T01:CDS |
| ATCAACCGAGTGAGTCAATC+CGG | 0.532632 | 1:-40207363 | MsG0180002548.01.T01:CDS |
| TTGAGTAAAATTTGCTACTG+TGG | 0.533623 | 1:-40206857 | MsG0180002548.01.T01:CDS |
| GAATGCGGGGAGTCCTGTTA+GGG | 0.541817 | 1:-40208021 | MsG0180002548.01.T01:CDS |
| TCTTCAAAACAAAATTGAAA+GGG | 0.541871 | 1:-40207320 | MsG0180002548.01.T01:CDS |
| CGAAGCTACAAGGTTTATGA+AGG | 0.543860 | 1:-40208360 | MsG0180002548.01.T01:CDS |
| TTGCTGCAAGGTGAATATCA+AGG | 0.545402 | 1:-40206882 | MsG0180002548.01.T01:CDS |
| AAAACAAAATTGAAAGGGTG+GGG | 0.546151 | 1:-40207315 | MsG0180002548.01.T01:CDS |
| CGCGCCAATTTCTGATCATG+AGG | 0.548143 | 1:+40208071 | None:intergenic |
| TATTGATTATTTGGGTAAAG+GGG | 0.549643 | 1:-40208213 | MsG0180002548.01.T01:CDS |
| TATGAAGGCGAAACGTCAAT+GGG | 0.552062 | 1:-40208345 | MsG0180002548.01.T01:CDS |
| ACGACGAACACAAGCAAGAA+GGG | 0.553207 | 1:+40207391 | None:intergenic |
| TAGAGGTCTTGTTCTCTCCA+AGG | 0.558562 | 1:-40207697 | MsG0180002548.01.T01:CDS |
| TCTATGAGTTACAACAATGC+TGG | 0.561265 | 1:+40208175 | None:intergenic |
| GGTGGGACATTAGCCTATGA+TGG | 0.561445 | 1:-40207465 | MsG0180002548.01.T01:CDS |
| GACGACGAACACAAGCAAGA+AGG | 0.566653 | 1:+40207390 | None:intergenic |
| GTGGAGATACCTAAACCCTT+CGG | 0.568688 | 1:-40207600 | MsG0180002548.01.T01:CDS |
| TTATCTTGTCAGAAGATGAA+AGG | 0.571853 | 1:+40208516 | None:intergenic |
| TTGGTTTCCATAACATCTCG+AGG | 0.577098 | 1:+40207744 | None:intergenic |
| CGAATCAATGATATTTCGGA+GGG | 0.577253 | 1:-40207666 | MsG0180002548.01.T01:CDS |
| CAGAAGAGACACAATTCTGA+AGG | 0.581158 | 1:-40207792 | MsG0180002548.01.T01:CDS |
| TAACTCAGCTCTCTACCTGC+GGG | 0.583390 | 1:+40206914 | None:intergenic |
| TTGTGGAATAGTATGAATGC+GGG | 0.595742 | 1:-40208035 | MsG0180002548.01.T01:CDS |
| CATATTGACTAGGTAACCGA+AGG | 0.601280 | 1:+40207584 | None:intergenic |
| CTAGACATGGAAACATTGGA+AGG | 0.602878 | 1:-40207042 | MsG0180002548.01.T01:CDS |
| TGCATTGATGCAACTAGACA+TGG | 0.604656 | 1:-40207055 | MsG0180002548.01.T01:CDS |
| TGTTTGCTTTATGAAGGTCA+TGG | 0.606830 | 1:-40208125 | MsG0180002548.01.T01:CDS |
| TCTCGAGGGGAAACACTAGC+CGG | 0.615076 | 1:+40207831 | None:intergenic |
| TGTGGTTCATTGGAATGCAA+TGG | 0.618637 | 1:-40206839 | MsG0180002548.01.T01:CDS |
| TGTGTTTGCATAGCTAAGAA+TGG | 0.620233 | 1:-40207486 | MsG0180002548.01.T01:CDS |
| TTGGATAAGTCATATTGACT+AGG | 0.621126 | 1:+40207574 | None:intergenic |
| AAAGTTCCCATAACATCTCG+AGG | 0.623289 | 1:+40207816 | None:intergenic |
| TCGAATCAATGATATTTCGG+AGG | 0.627900 | 1:-40207667 | MsG0180002548.01.T01:CDS |
| AGAAAAGTTTCCTATTCGTG+TGG | 0.630138 | 1:-40207640 | MsG0180002548.01.T01:CDS |
| GAGGGGAAACACTAGCCGGT+TGG | 0.631704 | 1:+40207835 | None:intergenic |
| AATCGTTCGATGCTAGGTGG+TGG | 0.633767 | 1:-40207546 | MsG0180002548.01.T01:CDS |
| ATAACTCAGCTCTCTACCTG+CGG | 0.634593 | 1:+40206913 | None:intergenic |
| AAGTTCCCATAACATCTCGA+GGG | 0.638178 | 1:+40207817 | None:intergenic |
| GGTAACCCTAATATAAGGGA+CGG | 0.652106 | 1:-40208101 | MsG0180002548.01.T01:CDS |
| GCTACAAAGGACATACCCGC+AGG | 0.652394 | 1:-40206929 | MsG0180002548.01.T01:CDS |
| TTTGCATAGCTAAGAATGGT+GGG | 0.653656 | 1:-40207482 | MsG0180002548.01.T01:CDS |
| CTCCATCAACAACACTCATG+TGG | 0.662631 | 1:-40208236 | MsG0180002548.01.T01:CDS |
| AGTTCCCATAACATCTCGAG+GGG | 0.674068 | 1:+40207818 | None:intergenic |
| ATATTGACTAGGTAACCGAA+GGG | 0.676746 | 1:+40207585 | None:intergenic |
| TCACACACAAAGCTTCCGGA+TGG | 0.681981 | 1:+40207270 | None:intergenic |
| AAACGTCAATGGGAAAACAC+CGG | 0.685237 | 1:-40208335 | MsG0180002548.01.T01:CDS |
| GGTGACACCTATAAGCTATG+TGG | 0.687112 | 1:-40207619 | MsG0180002548.01.T01:CDS |
| TATAAAGGATGATTTCATAG+GGG | 0.691473 | 1:+40207425 | None:intergenic |
| ATGAATCGTTCGATGCTAGG+TGG | 0.692925 | 1:-40207549 | MsG0180002548.01.T01:CDS |
| GAATACCGGATTGACTCACT+CGG | 0.697579 | 1:+40207358 | None:intergenic |
| TGTGGAATAGTATGAATGCG+GGG | 0.700340 | 1:-40208034 | MsG0180002548.01.T01:CDS |
| CATGATCAGAAATTGGCGCG+CGG | 0.700635 | 1:-40208068 | MsG0180002548.01.T01:CDS |
| TTTGTGGAATAGTATGAATG+CGG | 0.704358 | 1:-40208036 | MsG0180002548.01.T01:CDS |
| TTGCTTTATGAAGGTCATGG+TGG | 0.708605 | 1:-40208122 | MsG0180002548.01.T01:CDS |
| GTTTGCATAGCTAAGAATGG+TGG | 0.725954 | 1:-40207483 | MsG0180002548.01.T01:CDS |
| TTATGATTACAATTGCTGCA+AGG | 0.726923 | 1:-40206894 | MsG0180002548.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTGAAAGCAAAATTAA+GGG | - | Chr1:40207011-40207030 | MsG0180002548.01.T01:CDS | 15.0% |
| !! | GATGACTATATAATTAATAT+GGG | - | Chr1:40208212-40208231 | MsG0180002548.01.T01:CDS | 15.0% |
| !! | TAAAATTGAAAGCAAAATTA+AGG | - | Chr1:40207010-40207029 | MsG0180002548.01.T01:CDS | 15.0% |
| !! | TGATGACTATATAATTAATA+TGG | - | Chr1:40208211-40208230 | MsG0180002548.01.T01:CDS | 15.0% |
| !!! | ATAAAGCATTAACAATTTTT+AGG | - | Chr1:40206941-40206960 | MsG0180002548.01.T01:CDS | 15.0% |
| !!! | TAAAGCATTAACAATTTTTA+GGG | - | Chr1:40206942-40206961 | MsG0180002548.01.T01:CDS | 15.0% |
| !! | ATATAAAGGATGATTTCATA+GGG | + | Chr1:40207980-40207999 | None:intergenic | 20.0% |
| !! | ATCTTCAAAACAAAATTGAA+AGG | - | Chr1:40208080-40208099 | MsG0180002548.01.T01:CDS | 20.0% |
| !! | CTTATTCATACATATATGAT+GGG | - | Chr1:40207460-40207479 | MsG0180002548.01.T01:CDS | 20.0% |
| !! | TATATAAAGGATGATTTCAT+AGG | + | Chr1:40207981-40208000 | None:intergenic | 20.0% |
| !! | TCTTATTCATACATATATGA+TGG | - | Chr1:40207459-40207478 | MsG0180002548.01.T01:CDS | 20.0% |
| !! | TCTTCAAAACAAAATTGAAA+GGG | - | Chr1:40208081-40208100 | MsG0180002548.01.T01:CDS | 20.0% |
| !!! | AATTTTGCTTTCAATTTTAC+AGG | + | Chr1:40207009-40207028 | None:intergenic | 20.0% |
| !!! | ATTAATATGGGTAATGTTTT+TGG | - | Chr1:40208224-40208243 | MsG0180002548.01.T01:CDS | 20.0% |
| ! | TATAAAGGATGATTTCATAG+GGG | + | Chr1:40207979-40207998 | None:intergenic | 25.0% |
| ! | TGTTCGAATCAATGATATTT+CGG | - | Chr1:40207731-40207750 | MsG0180002548.01.T01:CDS | 25.0% |
| !! | ATGCAAAGTTCAAAATCTTT+TGG | - | Chr1:40206829-40206848 | MsG0180002548.01.T01:CDS | 25.0% |
| !! | TATTGATTATTTGGGTAAAG+GGG | - | Chr1:40207188-40207207 | MsG0180002548.01.T01:intron | 25.0% |
| !! | TGCAAAGTTCAAAATCTTTT+GGG | - | Chr1:40206830-40206849 | MsG0180002548.01.T01:CDS | 25.0% |
| !!! | GTATTGATTATTTGGGTAAA+GGG | - | Chr1:40207187-40207206 | MsG0180002548.01.T01:intron | 25.0% |
| !!! | TCATGTGGTATTGATTATTT+GGG | - | Chr1:40207180-40207199 | MsG0180002548.01.T01:intron | 25.0% |
| !!! | TTGTTTTGAAGATTTCAAGT+TGG | + | Chr1:40208073-40208092 | None:intergenic | 25.0% |
| AAAACAAAATTGAAAGGGTG+GGG | - | Chr1:40208086-40208105 | MsG0180002548.01.T01:CDS | 30.0% | |
| ACATAACATCTTTCACAACT+AGG | + | Chr1:40208411-40208430 | None:intergenic | 30.0% | |
| CAAAACAAAATTGAAAGGGT+GGG | - | Chr1:40208085-40208104 | MsG0180002548.01.T01:CDS | 30.0% | |
| GAGACCAATTACAATAAGTT+CGG | + | Chr1:40207148-40207167 | None:intergenic | 30.0% | |
| GTTTGTGCTTAAGAAAATTC+AGG | - | Chr1:40207542-40207561 | MsG0180002548.01.T01:CDS | 30.0% | |
| TCAAAACAAAATTGAAAGGG+TGG | - | Chr1:40208084-40208103 | MsG0180002548.01.T01:CDS | 30.0% | |
| TGGTGACCAATTTCAATATA+GGG | - | Chr1:40207122-40207141 | MsG0180002548.01.T01:intron | 30.0% | |
| TTATCTTGTCAGAAGATGAA+AGG | + | Chr1:40206888-40206907 | None:intergenic | 30.0% | |
| TTATGATTACAATTGCTGCA+AGG | - | Chr1:40208507-40208526 | MsG0180002548.01.T01:CDS | 30.0% | |
| TTTGTGGAATAGTATGAATG+CGG | - | Chr1:40207365-40207384 | MsG0180002548.01.T01:CDS | 30.0% | |
| ! | AAGTTTTCTGTTACCATCAT+AGG | + | Chr1:40207952-40207971 | None:intergenic | 30.0% |
| ! | CAAAATGTTGTTTGCTACAA+AGG | - | Chr1:40208459-40208478 | MsG0180002548.01.T01:CDS | 30.0% |
| ! | CTCTAGACATTTGTCTTTTT+CGG | + | Chr1:40207689-40207708 | None:intergenic | 30.0% |
| ! | TGTAGCAAACAACATTTTGT+GGG | + | Chr1:40208458-40208477 | None:intergenic | 30.0% |
| ! | TTCTGAAAAATCTGAAGTGA+TGG | - | Chr1:40207416-40207435 | MsG0180002548.01.T01:CDS | 30.0% |
| ! | TTGCTTTCAATTTTACAGGT+TGG | + | Chr1:40207005-40207024 | None:intergenic | 30.0% |
| ! | TTGGATAAGTCATATTGACT+AGG | + | Chr1:40207830-40207849 | None:intergenic | 30.0% |
| ! | TTGGTGACCAATTTCAATAT+AGG | - | Chr1:40207121-40207140 | MsG0180002548.01.T01:intron | 30.0% |
| ! | TTGTAGCAAACAACATTTTG+TGG | + | Chr1:40208459-40208478 | None:intergenic | 30.0% |
| !! | CATATATGATGGGTTGTATT+TGG | - | Chr1:40207470-40207489 | MsG0180002548.01.T01:CDS | 30.0% |
| !! | CTCATGTGGTATTGATTATT+TGG | - | Chr1:40207179-40207198 | MsG0180002548.01.T01:intron | 30.0% |
| !! | GGTATTGATTATTTGGGTAA+AGG | - | Chr1:40207186-40207205 | MsG0180002548.01.T01:intron | 30.0% |
| !! | TTGAGTAAAATTTGCTACTG+TGG | - | Chr1:40208544-40208563 | MsG0180002548.01.T01:CDS | 30.0% |
| !!! | GTTGATTTGATCCAACTTTT+TGG | + | Chr1:40208187-40208206 | None:intergenic | 30.0% |
| !!! | TTGTCTTTTTCGGAAAGTTT+TGG | + | Chr1:40207679-40207698 | None:intergenic | 30.0% |
| AAAACACCGGAAAGAGAATA+GGG | - | Chr1:40207079-40207098 | MsG0180002548.01.T01:intron | 35.0% | |
| ACATCTTTCACAACTAGGTT+AGG | + | Chr1:40208406-40208425 | None:intergenic | 35.0% | |
| ACCTTCATAAAGCAAACAAC+CGG | + | Chr1:40207274-40207293 | None:intergenic | 35.0% | |
| AGAAAAGTTTCCTATTCGTG+TGG | - | Chr1:40207761-40207780 | MsG0180002548.01.T01:CDS | 35.0% | |
| AGGGCTACACTCATATATAA+AGG | + | Chr1:40207994-40208013 | None:intergenic | 35.0% | |
| ATGGTGGTAACCCTAATATA+AGG | - | Chr1:40207295-40207314 | MsG0180002548.01.T01:CDS | 35.0% | |
| CATCACAACAACCAAAAAGT+TGG | - | Chr1:40208173-40208192 | MsG0180002548.01.T01:CDS | 35.0% | |
| CATGTAGATGGAATTGAAGT+TGG | - | Chr1:40207102-40207121 | MsG0180002548.01.T01:intron | 35.0% | |
| CGAAAAAGACAAATGTCTAG+AGG | - | Chr1:40207687-40207706 | MsG0180002548.01.T01:CDS | 35.0% | |
| CGAATCAATGATATTTCGGA+GGG | - | Chr1:40207735-40207754 | MsG0180002548.01.T01:CDS | 35.0% | |
| CTCGAGGAAAAACATTCTTT+GGG | + | Chr1:40207644-40207663 | None:intergenic | 35.0% | |
| CTTCATAAACCTTGTAGCTT+CGG | + | Chr1:40207043-40207062 | None:intergenic | 35.0% | |
| TAAGAAAATTCAGGACCAAC+CGG | - | Chr1:40207551-40207570 | MsG0180002548.01.T01:CDS | 35.0% | |
| TCGAATCAATGATATTTCGG+AGG | - | Chr1:40207734-40207753 | MsG0180002548.01.T01:CDS | 35.0% | |
| TCTATGAGTTACAACAATGC+TGG | + | Chr1:40207229-40207248 | None:intergenic | 35.0% | |
| TCTCGAGGAAAAACATTCTT+TGG | + | Chr1:40207645-40207664 | None:intergenic | 35.0% | |
| TGGTGGTAACCCTAATATAA+GGG | - | Chr1:40207296-40207315 | MsG0180002548.01.T01:CDS | 35.0% | |
| TGTGTTTGCATAGCTAAGAA+TGG | - | Chr1:40207915-40207934 | MsG0180002548.01.T01:CDS | 35.0% | |
| TGTTTGCTTTATGAAGGTCA+TGG | - | Chr1:40207276-40207295 | MsG0180002548.01.T01:CDS | 35.0% | |
| TTGTGGAATAGTATGAATGC+GGG | - | Chr1:40207366-40207385 | MsG0180002548.01.T01:CDS | 35.0% | |
| TTTGCATAGCTAAGAATGGT+GGG | - | Chr1:40207919-40207938 | MsG0180002548.01.T01:CDS | 35.0% | |
| ! | AAACATTCTTTGGGAGAACA+TGG | + | Chr1:40207635-40207654 | None:intergenic | 35.0% |
| ! | ATATTGACTAGGTAACCGAA+GGG | + | Chr1:40207819-40207838 | None:intergenic | 35.0% |
| ! | GTAGCAAACAACATTTTGTG+GGG | + | Chr1:40208457-40208476 | None:intergenic | 35.0% |
| ! | TGATGTTGTATGCATTTTGC+AGG | - | Chr1:40208307-40208326 | MsG0180002548.01.T01:CDS | 35.0% |
| ! | TGTTTTTCCTCGAGATGTTA+TGG | - | Chr1:40207650-40207669 | MsG0180002548.01.T01:CDS | 35.0% |
| !! | AATTTGCTACTGTGGTTCAT+TGG | - | Chr1:40208552-40208571 | MsG0180002548.01.T01:CDS | 35.0% |
| !! | ATTGATTCGAACAACATCCT+TGG | + | Chr1:40207724-40207743 | None:intergenic | 35.0% |
| !! | TTCAAGTTGGAACTGAATAC+CGG | + | Chr1:40208060-40208079 | None:intergenic | 35.0% |
| !!! | CACTGTTTTGAAACGAAGAA+AGG | - | Chr1:40206915-40206934 | MsG0180002548.01.T01:CDS | 35.0% |
| AAACGTCAATGGGAAAACAC+CGG | - | Chr1:40207066-40207085 | MsG0180002548.01.T01:CDS | 40.0% | |
| AAAGTTCCCATAACATCTCG+AGG | + | Chr1:40207588-40207607 | None:intergenic | 40.0% | |
| AACAATGTGACTCGAGTAAG+AGG | - | Chr1:40207495-40207514 | MsG0180002548.01.T01:CDS | 40.0% | |
| AAGAGAATAGGGCATGTAGA+TGG | - | Chr1:40207090-40207109 | MsG0180002548.01.T01:intron | 40.0% | |
| AAGATGAATCGTTCGATGCT+AGG | - | Chr1:40207849-40207868 | MsG0180002548.01.T01:CDS | 40.0% | |
| AAGTTCCCATAACATCTCGA+GGG | + | Chr1:40207587-40207606 | None:intergenic | 40.0% | |
| ACCTGCAATATAACCCTAAC+AGG | + | Chr1:40207396-40207415 | None:intergenic | 40.0% | |
| ACTCGAGTAAGAGGACAATT+TGG | - | Chr1:40207504-40207523 | MsG0180002548.01.T01:CDS | 40.0% | |
| AGGGCCGAACTTATTGTAAT+TGG | - | Chr1:40207141-40207160 | MsG0180002548.01.T01:intron | 40.0% | |
| CAGAAGAGACACAATTCTGA+AGG | - | Chr1:40207609-40207628 | MsG0180002548.01.T01:CDS | 40.0% | |
| CGAAGCTACAAGGTTTATGA+AGG | - | Chr1:40207041-40207060 | MsG0180002548.01.T01:CDS | 40.0% | |
| CTAGACATGGAAACATTGGA+AGG | - | Chr1:40208359-40208378 | MsG0180002548.01.T01:CDS | 40.0% | |
| CTTCAGAATTGTGTCTCTTC+TGG | + | Chr1:40207611-40207630 | None:intergenic | 40.0% | |
| GAAAACACCGGAAAGAGAAT+AGG | - | Chr1:40207078-40207097 | MsG0180002548.01.T01:intron | 40.0% | |
| GATTATTTGGGTAAAGGGGA+GGG | - | Chr1:40207192-40207211 | MsG0180002548.01.T01:CDS | 40.0% | |
| GCAACTAGACATGGAAACAT+TGG | - | Chr1:40208355-40208374 | MsG0180002548.01.T01:CDS | 40.0% | |
| GCGAATGTTATGAAGTCTTC+CGG | - | Chr1:40207252-40207271 | MsG0180002548.01.T01:CDS | 40.0% | |
| GGTAACCCTAATATAAGGGA+CGG | - | Chr1:40207300-40207319 | MsG0180002548.01.T01:CDS | 40.0% | |
| GGTATCTCCACATAGCTTAT+AGG | + | Chr1:40207792-40207811 | None:intergenic | 40.0% | |
| GTTCGGCCCTATATTGAAAT+TGG | + | Chr1:40207131-40207150 | None:intergenic | 40.0% | |
| GTTTGCATAGCTAAGAATGG+TGG | - | Chr1:40207918-40207937 | MsG0180002548.01.T01:CDS | 40.0% | |
| TACATGCCCTATTCTCTTTC+CGG | + | Chr1:40207088-40207107 | None:intergenic | 40.0% | |
| TATGAAGGCGAAACGTCAAT+GGG | - | Chr1:40207056-40207075 | MsG0180002548.01.T01:CDS | 40.0% | |
| TCCGGTTGTTTGCTTTATGA+AGG | - | Chr1:40207270-40207289 | MsG0180002548.01.T01:CDS | 40.0% | |
| TCCTGTTAGGGTTATATTGC+AGG | - | Chr1:40207392-40207411 | MsG0180002548.01.T01:CDS | 40.0% | |
| TGATTATTTGGGTAAAGGGG+AGG | - | Chr1:40207191-40207210 | MsG0180002548.01.T01:CDS | 40.0% | |
| TGTGGAATAGTATGAATGCG+GGG | - | Chr1:40207367-40207386 | MsG0180002548.01.T01:CDS | 40.0% | |
| TGTGGTTCATTGGAATGCAA+TGG | - | Chr1:40208562-40208581 | MsG0180002548.01.T01:CDS | 40.0% | |
| TTATGAAGGCGAAACGTCAA+TGG | - | Chr1:40207055-40207074 | MsG0180002548.01.T01:CDS | 40.0% | |
| TTGCTGCAAGGTGAATATCA+AGG | - | Chr1:40208519-40208538 | MsG0180002548.01.T01:CDS | 40.0% | |
| TTGCTTTATGAAGGTCATGG+TGG | - | Chr1:40207279-40207298 | MsG0180002548.01.T01:CDS | 40.0% | |
| TTGGTTTCCATAACATCTCG+AGG | + | Chr1:40207660-40207679 | None:intergenic | 40.0% | |
| ! | AGCATCGAACGATTCATCTT+TGG | + | Chr1:40207849-40207868 | None:intergenic | 40.0% |
| ! | CATATTGACTAGGTAACCGA+AGG | + | Chr1:40207820-40207839 | None:intergenic | 40.0% |
| ! | TACCACATGAGTGTTGTTGA+TGG | + | Chr1:40207170-40207189 | None:intergenic | 40.0% |
| ! | TGCATTGATGCAACTAGACA+TGG | - | Chr1:40208346-40208365 | MsG0180002548.01.T01:CDS | 40.0% |
| ACACGCTCTTTCATTCCATC+CGG | - | Chr1:40208116-40208135 | MsG0180002548.01.T01:CDS | 45.0% | |
| ACGACGAACACAAGCAAGAA+GGG | + | Chr1:40208013-40208032 | None:intergenic | 45.0% | |
| ACTAGGTAACCGAAGGGTTT+AGG | + | Chr1:40207813-40207832 | None:intergenic | 45.0% | |
| AGTTCCCATAACATCTCGAG+GGG | + | Chr1:40207586-40207605 | None:intergenic | 45.0% | |
| ATAACTCAGCTCTCTACCTG+CGG | + | Chr1:40208491-40208510 | None:intergenic | 45.0% | |
| ATCAACCGAGTGAGTCAATC+CGG | - | Chr1:40208038-40208057 | MsG0180002548.01.T01:CDS | 45.0% | |
| ATGAATCGTTCGATGCTAGG+TGG | - | Chr1:40207852-40207871 | MsG0180002548.01.T01:CDS | 45.0% | |
| CAACGCCGTCCCTTATATTA+GGG | + | Chr1:40207308-40207327 | None:intergenic | 45.0% | |
| CTCCATCAACAACACTCATG+TGG | - | Chr1:40207165-40207184 | MsG0180002548.01.T01:intron | 45.0% | |
| GGTGACACCTATAAGCTATG+TGG | - | Chr1:40207782-40207801 | MsG0180002548.01.T01:CDS | 45.0% | |
| GTGGAGATACCTAAACCCTT+CGG | - | Chr1:40207801-40207820 | MsG0180002548.01.T01:CDS | 45.0% | |
| GTTTCCCCTCGAGATGTTAT+GGG | - | Chr1:40207579-40207598 | MsG0180002548.01.T01:CDS | 45.0% | |
| TCAATGCAGCTCTTGCTAGA+AGG | + | Chr1:40208334-40208353 | None:intergenic | 45.0% | |
| TGCGCCTCATGATCAGAAAT+TGG | - | Chr1:40207326-40207345 | MsG0180002548.01.T01:CDS | 45.0% | |
| TGTTTCCCCTCGAGATGTTA+TGG | - | Chr1:40207578-40207597 | MsG0180002548.01.T01:CDS | 45.0% | |
| ! | AGCTTTGTGTGTGAGCTCAT+TGG | - | Chr1:40208140-40208159 | MsG0180002548.01.T01:CDS | 45.0% |
| ! | ATAGGTGTCACCACACGAAT+AGG | + | Chr1:40207774-40207793 | None:intergenic | 45.0% |
| ! | GAATACCGGATTGACTCACT+CGG | + | Chr1:40208046-40208065 | None:intergenic | 45.0% |
| ! | TTGGGAGAAAGCGTGAAGAA+TGG | - | Chr1:40206848-40206867 | MsG0180002548.01.T01:CDS | 45.0% |
| !! | TAGAGGTCTTGTTCTCTCCA+AGG | - | Chr1:40207704-40207723 | MsG0180002548.01.T01:CDS | 45.0% |
| AATCGTTCGATGCTAGGTGG+TGG | - | Chr1:40207855-40207874 | MsG0180002548.01.T01:CDS | 50.0% | |
| CATGATCAGAAATTGGCGCG+CGG | - | Chr1:40207333-40207352 | MsG0180002548.01.T01:CDS | 50.0% | |
| CGCGCCAATTTCTGATCATG+AGG | + | Chr1:40207333-40207352 | None:intergenic | 50.0% | |
| GACGACGAACACAAGCAAGA+AGG | + | Chr1:40208014-40208033 | None:intergenic | 50.0% | |
| GAGCTCACACACAAAGCTTC+CGG | + | Chr1:40208138-40208157 | None:intergenic | 50.0% | |
| GCAACGCCGTCCCTTATATT+AGG | + | Chr1:40207309-40207328 | None:intergenic | 50.0% | |
| TAACTCAGCTCTCTACCTGC+GGG | + | Chr1:40208490-40208509 | None:intergenic | 50.0% | |
| TCACACACAAAGCTTCCGGA+TGG | + | Chr1:40208134-40208153 | None:intergenic | 50.0% | |
| ! | GGTGGGACATTAGCCTATGA+TGG | - | Chr1:40207936-40207955 | MsG0180002548.01.T01:CDS | 50.0% |
| CGCGCGGAAATCTTGCTTTG+TGG | - | Chr1:40207349-40207368 | MsG0180002548.01.T01:CDS | 55.0% | |
| GAATGCGGGGAGTCCTGTTA+GGG | - | Chr1:40207380-40207399 | MsG0180002548.01.T01:CDS | 55.0% | |
| GCTACAAAGGACATACCCGC+AGG | - | Chr1:40208472-40208491 | MsG0180002548.01.T01:CDS | 55.0% | |
| GGGTAAAGGGGAGGGTTCTT+TGG | - | Chr1:40207200-40207219 | MsG0180002548.01.T01:CDS | 55.0% | |
| TCTCGAGGGGAAACACTAGC+CGG | + | Chr1:40207573-40207592 | None:intergenic | 55.0% | |
| TGAATGCGGGGAGTCCTGTT+AGG | - | Chr1:40207379-40207398 | MsG0180002548.01.T01:CDS | 55.0% | |
| ! | GGGCTTTAGCCGAAGCTACA+AGG | - | Chr1:40207031-40207050 | MsG0180002548.01.T01:CDS | 55.0% |
| GAGGGGAAACACTAGCCGGT+TGG | + | Chr1:40207569-40207588 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 40206823 | 40208600 | 40206823 | ID=MsG0180002548.01;Name=MsG0180002548.01 |
| Chr1 | mRNA | 40206823 | 40208600 | 40206823 | ID=MsG0180002548.01.T01;Parent=MsG0180002548.01;Name=MsG0180002548.01.T01;_AED=0.28;_eAED=0.28;_QI=0|0|0|1|1|1|2|0|560 |
| Chr1 | exon | 40207190 | 40208600 | 40207190 | ID=MsG0180002548.01.T01:exon:37077;Parent=MsG0180002548.01.T01 |
| Chr1 | exon | 40206823 | 40207094 | 40206823 | ID=MsG0180002548.01.T01:exon:37076;Parent=MsG0180002548.01.T01 |
| Chr1 | CDS | 40207190 | 40208600 | 40207190 | ID=MsG0180002548.01.T01:cds;Parent=MsG0180002548.01.T01 |
| Chr1 | CDS | 40206823 | 40207094 | 40206823 | ID=MsG0180002548.01.T01:cds;Parent=MsG0180002548.01.T01 |
| Gene Sequence |
| Protein sequence |
