Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003438.01.T01 | GAU13937.1 | 75.67 | 448 | 108 | 1 | 1 | 448 | 1 | 447 | 0 | 696 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003438.01.T01 | O49169 | 74.215 | 446 | 114 | 1 | 1 | 446 | 1 | 445 | 0 | 681 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003438.01.T01 | G7K8A4 | 75.212 | 472 | 80 | 1 | 3 | 437 | 13 | 484 | 0.0 | 717 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000065.01 | MsG0180003438.01 | 0.801579 | 8.425911e-49 | 4.038151e-46 |
| MsG0180002089.01 | MsG0180003438.01 | 0.805860 | 1.088332e-49 | 5.820951e-47 |
| MsG0180002709.01 | MsG0180003438.01 | 0.820891 | 5.397833e-53 | 4.325272e-50 |
| MsG0180003438.01 | MsG0180006023.01 | 0.813837 | 2.091452e-51 | 1.380615e-48 |
| MsG0180003438.01 | MsG0280006456.01 | 0.818258 | 2.152869e-52 | 1.603450e-49 |
| MsG0180003438.01 | MsG0280010287.01 | 0.813763 | 2.170891e-51 | 1.430198e-48 |
| MsG0180003438.01 | MsG0380016517.01 | 0.803895 | 2.802130e-49 | 1.424854e-46 |
| MsG0180003438.01 | MsG0380017232.01 | 0.813735 | 2.201806e-51 | 1.449530e-48 |
| MsG0180003438.01 | MsG0480022827.01 | 0.808636 | 2.810209e-50 | 1.615046e-47 |
| MsG0180003438.01 | MsG0580024632.01 | 0.804635 | 1.965131e-49 | 1.018360e-46 |
| MsG0180003438.01 | MsG0580027687.01 | 0.803250 | 3.812777e-49 | 1.906755e-46 |
| MsG0180003438.01 | MsG0580027688.01 | 0.812078 | 5.079713e-51 | 3.198542e-48 |
| MsG0180003438.01 | MsG0680032801.01 | 0.838245 | 3.225532e-57 | 4.294372e-54 |
| MsG0180003438.01 | MsG0680033379.01 | 0.834162 | 3.515612e-56 | 4.137234e-53 |
| MsG0180003438.01 | MsG0680033460.01 | 0.808777 | 2.621318e-50 | 1.512074e-47 |
| MsG0180003438.01 | MsG0780040788.01 | 0.820233 | 7.642015e-53 | 6.012348e-50 |
| MsG0180003438.01 | MsG0880044542.01 | 0.802187 | 6.319375e-49 | 3.075699e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003438.01.T01 | MTR_5g037350 | 75.212 | 472 | 80 | 1 | 3 | 437 | 13 | 484 | 0.0 | 717 |
| MsG0180003438.01.T01 | MTR_4g014810 | 75.670 | 448 | 108 | 1 | 1 | 448 | 1 | 447 | 0.0 | 696 |
| MsG0180003438.01.T01 | MTR_1g495705 | 75.446 | 448 | 110 | 0 | 1 | 448 | 1 | 448 | 0.0 | 692 |
| MsG0180003438.01.T01 | MTR_1g095650 | 75.446 | 448 | 110 | 0 | 1 | 448 | 1 | 448 | 0.0 | 692 |
| MsG0180003438.01.T01 | MTR_1g095703 | 75.223 | 448 | 111 | 0 | 1 | 448 | 1 | 448 | 0.0 | 691 |
| MsG0180003438.01.T01 | MTR_6g021800 | 75.115 | 434 | 108 | 0 | 1 | 434 | 1 | 434 | 0.0 | 678 |
| MsG0180003438.01.T01 | MTR_6g021805 | 75.115 | 434 | 108 | 0 | 1 | 434 | 1 | 434 | 0.0 | 678 |
| MsG0180003438.01.T01 | MTR_1g013680 | 74.828 | 437 | 107 | 1 | 1 | 434 | 1 | 437 | 0.0 | 664 |
| MsG0180003438.01.T01 | MTR_8g014590 | 72.768 | 448 | 120 | 1 | 1 | 446 | 1 | 448 | 0.0 | 654 |
| MsG0180003438.01.T01 | MTR_1g085410 | 71.719 | 442 | 125 | 0 | 1 | 442 | 1 | 442 | 0.0 | 644 |
| MsG0180003438.01.T01 | MTR_1g024175 | 70.046 | 434 | 130 | 0 | 1 | 434 | 1 | 434 | 0.0 | 625 |
| MsG0180003438.01.T01 | MTR_1g101870 | 69.885 | 435 | 126 | 3 | 1 | 435 | 1 | 430 | 0.0 | 606 |
| MsG0180003438.01.T01 | MTR_1g101870 | 69.885 | 435 | 126 | 3 | 1 | 435 | 1 | 430 | 0.0 | 605 |
| MsG0180003438.01.T01 | MTR_2g082730 | 65.035 | 429 | 133 | 2 | 1 | 427 | 1 | 414 | 0.0 | 558 |
| MsG0180003438.01.T01 | MTR_1g089520 | 62.818 | 433 | 143 | 4 | 2 | 433 | 3 | 418 | 0.0 | 533 |
| MsG0180003438.01.T01 | MTR_1g095650 | 73.487 | 347 | 92 | 0 | 102 | 448 | 1 | 347 | 0.0 | 520 |
| MsG0180003438.01.T01 | MTR_2g080210 | 60.860 | 442 | 132 | 5 | 5 | 445 | 7 | 408 | 8.48e-180 | 509 |
| MsG0180003438.01.T01 | MTR_2g082665 | 59.674 | 429 | 130 | 2 | 1 | 427 | 1 | 388 | 2.29e-174 | 498 |
| MsG0180003438.01.T01 | MTR_8g013910 | 56.570 | 449 | 160 | 5 | 1 | 433 | 1 | 430 | 6.14e-169 | 482 |
| MsG0180003438.01.T01 | MTR_2g037420 | 56.027 | 448 | 152 | 4 | 1 | 444 | 1 | 407 | 6.71e-164 | 470 |
| MsG0180003438.01.T01 | MTR_8g008740 | 70.154 | 325 | 96 | 1 | 1 | 324 | 1 | 325 | 1.80e-162 | 468 |
| MsG0180003438.01.T01 | MTR_1g112460 | 58.586 | 297 | 82 | 4 | 155 | 446 | 1 | 261 | 2.36e-103 | 309 |
| MsG0180003438.01.T01 | MTR_8g087950 | 35.915 | 426 | 263 | 6 | 7 | 426 | 275 | 696 | 2.93e-82 | 268 |
| MsG0180003438.01.T01 | MTR_8g087950 | 35.915 | 426 | 263 | 6 | 7 | 426 | 348 | 769 | 2.11e-81 | 267 |
| MsG0180003438.01.T01 | MTR_1g101880 | 75.974 | 154 | 37 | 0 | 1 | 154 | 1 | 154 | 3.79e-80 | 249 |
| MsG0180003438.01.T01 | MTR_6g080420 | 34.192 | 427 | 273 | 5 | 5 | 426 | 89 | 512 | 1.02e-79 | 256 |
| MsG0180003438.01.T01 | MTR_8g106700 | 33.333 | 426 | 276 | 5 | 4 | 424 | 43 | 465 | 1.69e-74 | 241 |
| MsG0180003438.01.T01 | MTR_8g106700 | 33.333 | 426 | 276 | 5 | 4 | 424 | 49 | 471 | 1.77e-74 | 241 |
| MsG0180003438.01.T01 | MTR_1g495735 | 61.194 | 201 | 68 | 1 | 240 | 430 | 106 | 306 | 2.58e-74 | 236 |
| MsG0180003438.01.T01 | MTR_1g495735 | 62.264 | 53 | 20 | 0 | 21 | 73 | 2 | 54 | 3.35e-13 | 70.5 |
| MsG0180003438.01.T01 | MTR_8g106700 | 33.333 | 426 | 276 | 5 | 4 | 424 | 70 | 492 | 4.33e-74 | 241 |
| MsG0180003438.01.T01 | MTR_4g054970 | 52.479 | 242 | 86 | 4 | 193 | 431 | 50 | 265 | 2.49e-67 | 216 |
| MsG0180003438.01.T01 | MTR_1g024165 | 71.739 | 138 | 39 | 0 | 8 | 145 | 12 | 149 | 2.84e-66 | 209 |
| MsG0180003438.01.T01 | MTR_8g014950 | 68.932 | 103 | 32 | 0 | 2 | 104 | 3 | 105 | 5.29e-43 | 147 |
| MsG0180003438.01.T01 | MTR_7g094460 | 28.798 | 441 | 248 | 15 | 3 | 429 | 59 | 447 | 8.57e-38 | 143 |
| MsG0180003438.01.T01 | MTR_2g021300 | 29.255 | 376 | 224 | 9 | 1 | 368 | 44 | 385 | 1.61e-37 | 142 |
| MsG0180003438.01.T01 | MTR_7g098190 | 46.707 | 167 | 63 | 5 | 56 | 220 | 10 | 152 | 3.09e-33 | 124 |
| MsG0180003438.01.T01 | MTR_3g076660 | 29.213 | 445 | 248 | 17 | 2 | 426 | 87 | 484 | 6.26e-33 | 130 |
| MsG0180003438.01.T01 | MTR_8g014960 | 74.286 | 70 | 18 | 0 | 213 | 282 | 2 | 71 | 5.92e-26 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003438.01.T01 | AT5G60390 | 73.543 | 446 | 117 | 1 | 1 | 446 | 1 | 445 | 0.0 | 678 |
| MsG0180003438.01.T01 | AT5G60390 | 73.543 | 446 | 117 | 1 | 1 | 446 | 1 | 445 | 0.0 | 678 |
| MsG0180003438.01.T01 | AT5G60390 | 73.543 | 446 | 117 | 1 | 1 | 446 | 1 | 445 | 0.0 | 678 |
| MsG0180003438.01.T01 | AT1G07920 | 73.543 | 446 | 117 | 1 | 1 | 446 | 1 | 445 | 0.0 | 678 |
| MsG0180003438.01.T01 | AT1G07940 | 73.543 | 446 | 117 | 1 | 1 | 446 | 1 | 445 | 0.0 | 678 |
| MsG0180003438.01.T01 | AT1G07940 | 73.543 | 446 | 117 | 1 | 1 | 446 | 1 | 445 | 0.0 | 678 |
| MsG0180003438.01.T01 | AT1G07940 | 73.543 | 446 | 117 | 1 | 1 | 446 | 1 | 445 | 0.0 | 678 |
| MsG0180003438.01.T01 | AT1G07940 | 73.543 | 446 | 117 | 1 | 1 | 446 | 1 | 445 | 0.0 | 678 |
| MsG0180003438.01.T01 | AT1G07930 | 73.543 | 446 | 117 | 1 | 1 | 446 | 1 | 445 | 0.0 | 678 |
| MsG0180003438.01.T01 | AT1G07930 | 78.431 | 255 | 55 | 0 | 1 | 255 | 1 | 255 | 1.79e-146 | 422 |
| MsG0180003438.01.T01 | AT1G07930 | 66.379 | 116 | 38 | 1 | 331 | 446 | 254 | 368 | 2.16e-45 | 162 |
| MsG0180003438.01.T01 | AT5G10630 | 33.867 | 437 | 278 | 6 | 1 | 429 | 230 | 663 | 1.01e-79 | 260 |
| MsG0180003438.01.T01 | AT5G10630 | 33.867 | 437 | 278 | 6 | 1 | 429 | 231 | 664 | 1.03e-79 | 260 |
| MsG0180003438.01.T01 | AT5G10630 | 33.867 | 437 | 278 | 6 | 1 | 429 | 231 | 664 | 1.03e-79 | 260 |
| MsG0180003438.01.T01 | AT5G10630 | 33.867 | 437 | 278 | 6 | 1 | 429 | 301 | 734 | 3.90e-79 | 260 |
| MsG0180003438.01.T01 | AT5G10630 | 33.867 | 437 | 278 | 6 | 1 | 429 | 306 | 739 | 5.91e-79 | 260 |
| MsG0180003438.01.T01 | AT1G18070 | 32.235 | 425 | 280 | 5 | 5 | 424 | 99 | 520 | 1.76e-74 | 243 |
| MsG0180003438.01.T01 | AT1G18070 | 32.235 | 425 | 280 | 5 | 5 | 424 | 99 | 520 | 1.76e-74 | 243 |
| MsG0180003438.01.T01 | AT1G18070 | 31.651 | 436 | 279 | 6 | 5 | 424 | 99 | 531 | 1.70e-71 | 236 |
| MsG0180003438.01.T01 | AT4G20360 | 29.864 | 442 | 255 | 12 | 2 | 429 | 74 | 474 | 3.58e-38 | 145 |
| MsG0180003438.01.T01 | AT4G20360 | 29.864 | 442 | 255 | 12 | 2 | 429 | 74 | 474 | 3.58e-38 | 145 |
| MsG0180003438.01.T01 | AT1G35550 | 62.000 | 100 | 38 | 0 | 335 | 434 | 1 | 100 | 5.16e-38 | 134 |
| MsG0180003438.01.T01 | AT4G02930 | 28.929 | 439 | 251 | 15 | 3 | 429 | 63 | 452 | 6.63e-38 | 144 |
Find 125 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTCATTGCTTTCGTTCT+TGG | 0.122350 | 1:-62294873 | MsG0180003438.01.T01:CDS |
| ATCGCCGCTCGTCAAGAATT+TGG | 0.142873 | 1:+62294044 | None:intergenic |
| CATATTAACATTGTGGTTAT+TGG | 0.176613 | 1:-62295263 | MsG0180003438.01.T01:CDS |
| ATGAATCACCCTGGCAAAAT+TGG | 0.194417 | 1:-62294177 | MsG0180003438.01.T01:CDS |
| GATTCCACTCCTGCTGGTTT+TGG | 0.214274 | 1:-62294933 | MsG0180003438.01.T01:CDS |
| AACTTTAGATGTAAAGTTAA+TGG | 0.240152 | 1:+62294206 | None:intergenic |
| GTCTACAAGATTGGAGGAAT+TGG | 0.315206 | 1:-62294459 | MsG0180003438.01.T01:CDS |
| TTCATTAAGAACATGATTAC+TGG | 0.322781 | 1:-62294990 | MsG0180003438.01.T01:CDS |
| CTCCTTGGCTGTGTGATGTT+TGG | 0.331084 | 1:+62294230 | None:intergenic |
| GATCTCACTGAGGCCCTTCC+TGG | 0.333581 | 1:-62294324 | MsG0180003438.01.T01:CDS |
| GCCTCTTAGGCTCCTTGATT+AGG | 0.355270 | 1:+62294517 | None:intergenic |
| GGCTTGTTTGATAGCCTCTT+AGG | 0.363114 | 1:+62294504 | None:intergenic |
| TCGCCGCTCGTCAAGAATTT+GGG | 0.365555 | 1:+62294045 | None:intergenic |
| ATTCCATTTGTTCCCATCTC+TGG | 0.372835 | 1:-62294618 | MsG0180003438.01.T01:CDS |
| GCAAAAGTCACCACCATTCC+AGG | 0.373840 | 1:+62294396 | None:intergenic |
| ATGTGTCTAGTGCGCATCTT+AGG | 0.379738 | 1:-62294275 | MsG0180003438.01.T01:CDS |
| TTCTTCATACCTATGCTTGA+AGG | 0.389081 | 1:+62294695 | None:intergenic |
| GCCTCTCAGATTACCACTTC+AGG | 0.411282 | 1:-62294484 | MsG0180003438.01.T01:CDS |
| ATCGTTGATTCCACTCCTGC+TGG | 0.415364 | 1:-62294939 | MsG0180003438.01.T01:CDS |
| AGTCTCTACCACCGCGGGCT+TGG | 0.420590 | 1:+62293996 | None:intergenic |
| GTTATTGGTCATGTCGACTC+TGG | 0.422148 | 1:-62295248 | MsG0180003438.01.T01:CDS |
| CACCCTGGCAAAATTGGAAA+TGG | 0.425101 | 1:-62294171 | MsG0180003438.01.T01:CDS |
| CTTCATCTTGCAGCCCAGTT+GGG | 0.429009 | 1:+62294373 | None:intergenic |
| CTTAATGAAATCCCTGTGTC+CGG | 0.429384 | 1:+62295004 | None:intergenic |
| TTGCTTTCGTTCTTGGTGTT+AGG | 0.429753 | 1:-62294866 | MsG0180003438.01.T01:CDS |
| ATACCTATGCTTGAAGGATA+GGG | 0.432638 | 1:+62294701 | None:intergenic |
| CATACCTATGCTTGAAGGAT+AGG | 0.441025 | 1:+62294700 | None:intergenic |
| ACTTCATCTTGCAGCCCAGT+TGG | 0.445939 | 1:+62294372 | None:intergenic |
| CTGTGGCTGTAGGATGTGTT+AGG | 0.449006 | 1:-62294434 | MsG0180003438.01.T01:CDS |
| AAACCAGAGATGGGAACAAA+TGG | 0.449170 | 1:+62294615 | None:intergenic |
| ATTTCAAGTTTAAGGAGTAA+TGG | 0.450213 | 1:-62295300 | MsG0180003438.01.T01:exon |
| CTTCAGGATGTCTACAAGAT+TGG | 0.458119 | 1:-62294468 | MsG0180003438.01.T01:CDS |
| ATAGCCGACTGTCCTCAAAA+AGG | 0.459190 | 1:+62294653 | None:intergenic |
| AATGATAGTGCAGCGGTACT+TGG | 0.460751 | 1:+62295034 | None:intergenic |
| TGTAAAGTTAATGGCCTCCT+TGG | 0.463064 | 1:+62294215 | None:intergenic |
| GGAGCCGGTATTTCTAAGAA+TGG | 0.463149 | 1:-62294912 | MsG0180003438.01.T01:CDS |
| TTCTTGACGAGCGGCGATGG+TGG | 0.470846 | 1:-62294039 | MsG0180003438.01.T01:CDS |
| TTAATGAAATCCCTGTGTCC+GGG | 0.473933 | 1:+62295005 | None:intergenic |
| AAGCTTCTTGCCAAGGTGGA+AGG | 0.476850 | 1:-62294096 | MsG0180003438.01.T01:CDS |
| GGAACAAATGGAATTTCGTA+TGG | 0.483034 | 1:+62294627 | None:intergenic |
| TAAGAAGAGCACAATCAGCT+TGG | 0.492321 | 1:+62294961 | None:intergenic |
| ACCTAATCAAGGAGCCTAAG+AGG | 0.494166 | 1:-62294518 | MsG0180003438.01.T01:CDS |
| ATCTCCCTCAAAACCAGAGA+TGG | 0.496573 | 1:+62294605 | None:intergenic |
| CTGACCATTCTTAGAAATAC+CGG | 0.501461 | 1:+62294908 | None:intergenic |
| TGCACTATCATTGATGCCCC+CGG | 0.502461 | 1:-62295023 | MsG0180003438.01.T01:CDS |
| TACTAAACTTGACTGGTACA+AGG | 0.504886 | 1:-62294565 | MsG0180003438.01.T01:CDS |
| GAGGTGTGGCAGTTAAGAAC+AGG | 0.514241 | 1:+62294141 | None:intergenic |
| GTTTGCTAAGCTTCTTGCCA+AGG | 0.514915 | 1:-62294103 | MsG0180003438.01.T01:CDS |
| TCATTAAGAACATGATTACT+GGG | 0.515556 | 1:-62294989 | MsG0180003438.01.T01:CDS |
| AAGAAGAGCACAATCAGCTT+GGG | 0.518698 | 1:+62294962 | None:intergenic |
| AAATTCTTGACGAGCGGCGA+TGG | 0.522166 | 1:-62294042 | MsG0180003438.01.T01:CDS |
| CAGGATGTCTACAAGATTGG+AGG | 0.523217 | 1:-62294465 | MsG0180003438.01.T01:CDS |
| CGAAGCTCTTGACCTAATCA+AGG | 0.523432 | 1:-62294529 | MsG0180003438.01.T01:CDS |
| AGCGTTCATTCAAGTATGCA+TGG | 0.525330 | 1:-62295130 | MsG0180003438.01.T01:CDS |
| TTCTGACAAGGTAATTGAGA+AGG | 0.526039 | 1:-62294070 | MsG0180003438.01.T01:CDS |
| GCTTGGAGGTATTGCAAAGA+AGG | 0.526354 | 1:-62295192 | MsG0180003438.01.T01:CDS |
| AGCTTCTTGCCAAGGTGGAA+GGG | 0.527911 | 1:-62294095 | MsG0180003438.01.T01:CDS |
| TGTGTGATGTTTGGAGTTTG+AGG | 0.528237 | 1:+62294239 | None:intergenic |
| GGTCATTTGATCTACAAGCT+TGG | 0.530464 | 1:-62295209 | MsG0180003438.01.T01:CDS |
| CTCAAGGCTGAGCGCGAAAG+AGG | 0.530816 | 1:-62295095 | MsG0180003438.01.T01:CDS |
| TTCATCTTGCAGCCCAGTTG+GGG | 0.537611 | 1:+62294374 | None:intergenic |
| CATTTGATCTACAAGCTTGG+AGG | 0.540739 | 1:-62295206 | MsG0180003438.01.T01:CDS |
| CATCTTGACTGTGAACAAGA+AGG | 0.543467 | 1:-62293905 | MsG0180003438.01.T01:CDS |
| GTCAGAAAACCCTTCCACCT+TGG | 0.544261 | 1:+62294086 | None:intergenic |
| CTTGAAGGATAGGGGATCAA+AGG | 0.545661 | 1:+62294710 | None:intergenic |
| AAGAAGGGTCCTGGTGAAAG+AGG | 0.545781 | 1:-62293889 | MsG0180003438.01.T01:CDS |
| GAATGAACGCTTGTTTATCT+CGG | 0.547008 | 1:+62295142 | None:intergenic |
| TGAAGTCATGTCTGTACAGA+TGG | 0.550884 | 1:-62294355 | MsG0180003438.01.T01:CDS |
| TCTACCACCGCGGGCTTGGT+AGG | 0.551248 | 1:+62294000 | None:intergenic |
| AGCAAACTTGACAGCAATGT+AGG | 0.551795 | 1:+62294119 | None:intergenic |
| TTATTGGTCATGTCGACTCT+GGG | 0.557218 | 1:-62295247 | MsG0180003438.01.T01:CDS |
| TCCGACATCATCACCAGGAA+GGG | 0.557483 | 1:+62294311 | None:intergenic |
| GGCTCCAAAACCAGCAGGAG+TGG | 0.562515 | 1:+62294929 | None:intergenic |
| GCATAGGTATGAAGAAATTG+TGG | 0.562949 | 1:-62294688 | MsG0180003438.01.T01:CDS |
| AGGACTGGTGTCTTGAAACC+TGG | 0.565768 | 1:-62294414 | MsG0180003438.01.T01:CDS |
| ACTAAACTTGACTGGTACAA+GGG | 0.566035 | 1:-62294564 | MsG0180003438.01.T01:CDS |
| ATGCGTCAAACTGTGGCTGT+TGG | 0.569698 | 1:-62293931 | MsG0180003438.01.T01:CDS |
| AAAAGCTCATATTAACATTG+TGG | 0.569943 | 1:-62295270 | MsG0180003438.01.T01:CDS |
| TAATGAAATCCCTGTGTCCG+GGG | 0.570266 | 1:+62295006 | None:intergenic |
| GTCAAGAGCTTCGAGAAGGG+TGG | 0.570618 | 1:+62294539 | None:intergenic |
| AAGCAATGAAAGCATGTTCG+CGG | 0.571248 | 1:+62294883 | None:intergenic |
| ACTGTGAACAAGAAGGGTCC+TGG | 0.573727 | 1:-62293898 | MsG0180003438.01.T01:CDS |
| ATCCCCTATCCTTCAAGCAT+AGG | 0.575322 | 1:-62294704 | MsG0180003438.01.T01:CDS |
| GCATATCTCTGACAACAAAA+CGG | 0.578290 | 1:+62293950 | None:intergenic |
| GCTGTAGGATGTGTTAGGAC+TGG | 0.580546 | 1:-62294429 | MsG0180003438.01.T01:CDS |
| ATCTTGACTGTGAACAAGAA+GGG | 0.581541 | 1:-62293904 | MsG0180003438.01.T01:CDS |
| TCTGGGAAGTCAACCACTGT+TGG | 0.581973 | 1:-62295230 | MsG0180003438.01.T01:CDS |
| GCGTTCATTCAAGTATGCAT+GGG | 0.589285 | 1:-62295129 | MsG0180003438.01.T01:CDS |
| AGCAATGAAAGCATGTTCGC+GGG | 0.594849 | 1:+62294884 | None:intergenic |
| ATACCGGCTCCAAAACCAGC+AGG | 0.596269 | 1:+62294924 | None:intergenic |
| ACAACAAAACGGCCGAGTGA+AGG | 0.596417 | 1:+62293961 | None:intergenic |
| GTGATCTTACCTCTTTCACC+AGG | 0.597042 | 1:+62293880 | None:intergenic |
| TCAAGAGCTTCGAGAAGGGT+GGG | 0.603405 | 1:+62294540 | None:intergenic |
| ATCCGACATCATCACCAGGA+AGG | 0.603821 | 1:+62294310 | None:intergenic |
| TGGTGTCTTGAAACCTGGAA+TGG | 0.603925 | 1:-62294409 | MsG0180003438.01.T01:CDS |
| TACCTATGCTTGAAGGATAG+GGG | 0.604649 | 1:+62294702 | None:intergenic |
| TTAGGTCAAGAGCTTCGAGA+AGG | 0.606492 | 1:+62294535 | None:intergenic |
| TCTCCCTCAAAACCAGAGAT+GGG | 0.607478 | 1:+62294606 | None:intergenic |
| GCCCTTCCTGGTGATGATGT+CGG | 0.607581 | 1:-62294312 | MsG0180003438.01.T01:CDS |
| ATGGGTTCTTGACAAACTCA+AGG | 0.614468 | 1:-62295111 | MsG0180003438.01.T01:CDS |
| AGCGCTCTACTAAACTTGAC+TGG | 0.615749 | 1:-62294572 | MsG0180003438.01.T01:CDS |
| ATCTTGTAGACATCCTGAAG+TGG | 0.621388 | 1:+62294471 | None:intergenic |
| TGTCTTGAAACCTGGAATGG+TGG | 0.623654 | 1:-62294406 | MsG0180003438.01.T01:CDS |
| TGCTAAGCTTCTTGCCAAGG+TGG | 0.624953 | 1:-62294100 | MsG0180003438.01.T01:CDS |
| CTCCAAACATCACACAGCCA+AGG | 0.626961 | 1:-62294232 | MsG0180003438.01.T01:CDS |
| TGACAGCAATGTAGGAGGTG+TGG | 0.628993 | 1:+62294127 | None:intergenic |
| TAGGTCAAGAGCTTCGAGAA+GGG | 0.637490 | 1:+62294536 | None:intergenic |
| AATGATCTGCTGCTGCAACA+AGG | 0.643325 | 1:-62294841 | MsG0180003438.01.T01:intron |
| AAACTTGACAGCAATGTAGG+AGG | 0.649214 | 1:+62294122 | None:intergenic |
| GGAATTGGAACTGTGGCTGT+AGG | 0.649538 | 1:-62294444 | MsG0180003438.01.T01:CDS |
| GCAAATCCGACATCATCACC+AGG | 0.655202 | 1:+62294306 | None:intergenic |
| TCCTGAAGTGGTAATCTGAG+AGG | 0.658117 | 1:+62294483 | None:intergenic |
| GAACCCAAATTCTTGACGAG+CGG | 0.659418 | 1:-62294048 | MsG0180003438.01.T01:CDS |
| AATGAAATCCCTGTGTCCGG+GGG | 0.661737 | 1:+62295007 | None:intergenic |
| CAAACATCACACAGCCAAGG+AGG | 0.663216 | 1:-62294229 | MsG0180003438.01.T01:CDS |
| GTTATCATCATGAATCACCC+TGG | 0.670339 | 1:-62294186 | MsG0180003438.01.T01:CDS |
| TCTAGTGCGCATCTTAGGCG+AGG | 0.670375 | 1:-62294270 | MsG0180003438.01.T01:CDS |
| CAGAGATATGCGTCAAACTG+TGG | 0.673497 | 1:-62293938 | MsG0180003438.01.T01:CDS |
| GATTCCTACCAAGCCCGCGG+TGG | 0.674286 | 1:-62294004 | MsG0180003438.01.T01:CDS |
| GGGCCTCAGTGAGATCTGCA+CGG | 0.689409 | 1:+62294331 | None:intergenic |
| GATGATTCCTACCAAGCCCG+CGG | 0.700053 | 1:-62294007 | MsG0180003438.01.T01:CDS |
| GGGCATCAATGATAGTGCAG+CGG | 0.701837 | 1:+62295027 | None:intergenic |
| GATTGGAGGAATTGGAACTG+TGG | 0.703844 | 1:-62294451 | MsG0180003438.01.T01:CDS |
| GTAGATCAAATGACCAACAG+TGG | 0.722636 | 1:+62295217 | None:intergenic |
| GGACCGTGCAGATCTCACTG+AGG | 0.801444 | 1:-62294334 | MsG0180003438.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCAAATACAACTTTAAA+AGG | + | Chr1:62294348-62294367 | None:intergenic | 15.0% |
| !!! | AATCAAATACAACTTTAAAA+GGG | + | Chr1:62294347-62294366 | None:intergenic | 15.0% |
| !!! | TTTTTATGATTTCAAGTTTA+AGG | - | Chr1:62293839-62293858 | MsG0180003438.01.T01:CDS | 15.0% |
| !! | AACTTTAGATGTAAAGTTAA+TGG | + | Chr1:62294944-62294963 | None:intergenic | 20.0% |
| ! | AAAAGCTCATATTAACATTG+TGG | - | Chr1:62293877-62293896 | MsG0180003438.01.T01:CDS | 25.0% |
| ! | CATATTAACATTGTGGTTAT+TGG | - | Chr1:62293884-62293903 | MsG0180003438.01.T01:CDS | 25.0% |
| ! | TCATTAAGAACATGATTACT+GGG | - | Chr1:62294158-62294177 | MsG0180003438.01.T01:CDS | 25.0% |
| ! | TTAATATCTATCTTGACAGA+TGG | - | Chr1:62294411-62294430 | MsG0180003438.01.T01:CDS | 25.0% |
| ! | TTCATTAAGAACATGATTAC+TGG | - | Chr1:62294157-62294176 | MsG0180003438.01.T01:CDS | 25.0% |
| !! | TTTTCTAAATATCCTTCACT+CGG | - | Chr1:62295174-62295193 | MsG0180003438.01.T01:CDS | 25.0% |
| !!! | ATTTCAAGTTTAAGGAGTAA+TGG | - | Chr1:62293847-62293866 | MsG0180003438.01.T01:CDS | 25.0% |
| !!! | AACAGTTCTTGTTTTCAATG+TGG | + | Chr1:62295298-62295317 | None:intergenic | 30.0% |
| ACTAAACTTGACTGGTACAA+GGG | - | Chr1:62294583-62294602 | MsG0180003438.01.T01:CDS | 35.0% | |
| ATACCTATGCTTGAAGGATA+GGG | + | Chr1:62294449-62294468 | None:intergenic | 35.0% | |
| ATCTTGACTGTGAACAAGAA+GGG | - | Chr1:62295243-62295262 | MsG0180003438.01.T01:CDS | 35.0% | |
| CTGACCATTCTTAGAAATAC+CGG | + | Chr1:62294242-62294261 | None:intergenic | 35.0% | |
| GAATGAACGCTTGTTTATCT+CGG | + | Chr1:62294008-62294027 | None:intergenic | 35.0% | |
| GCATAGGTATGAAGAAATTG+TGG | - | Chr1:62294459-62294478 | MsG0180003438.01.T01:CDS | 35.0% | |
| GCATATCTCTGACAACAAAA+CGG | + | Chr1:62295200-62295219 | None:intergenic | 35.0% | |
| GGAACAAATGGAATTTCGTA+TGG | + | Chr1:62294523-62294542 | None:intergenic | 35.0% | |
| TACTAAACTTGACTGGTACA+AGG | - | Chr1:62294582-62294601 | MsG0180003438.01.T01:CDS | 35.0% | |
| TTCTGACAAGGTAATTGAGA+AGG | - | Chr1:62295077-62295096 | MsG0180003438.01.T01:CDS | 35.0% | |
| TTCTTCATACCTATGCTTGA+AGG | + | Chr1:62294455-62294474 | None:intergenic | 35.0% | |
| ! | AGCAACTTTCATCCTTTTTG+AGG | - | Chr1:62294482-62294501 | MsG0180003438.01.T01:CDS | 35.0% |
| ! | GAAAACAAGAACTGTTTTGC+AGG | - | Chr1:62295302-62295321 | MsG0180003438.01.T01:exon | 35.0% |
| AAACCAGAGATGGGAACAAA+TGG | + | Chr1:62294535-62294554 | None:intergenic | 40.0% | |
| AAACTTGACAGCAATGTAGG+AGG | + | Chr1:62295028-62295047 | None:intergenic | 40.0% | |
| AGCAAACTTGACAGCAATGT+AGG | + | Chr1:62295031-62295050 | None:intergenic | 40.0% | |
| AGCGTTCATTCAAGTATGCA+TGG | - | Chr1:62294017-62294036 | MsG0180003438.01.T01:CDS | 40.0% | |
| ATCTTGTAGACATCCTGAAG+TGG | + | Chr1:62294679-62294698 | None:intergenic | 40.0% | |
| ATGAATCACCCTGGCAAAAT+TGG | - | Chr1:62294970-62294989 | MsG0180003438.01.T01:CDS | 40.0% | |
| ATGGGTTCTTGACAAACTCA+AGG | - | Chr1:62294036-62294055 | MsG0180003438.01.T01:CDS | 40.0% | |
| ATTCCATTTGTTCCCATCTC+TGG | - | Chr1:62294529-62294548 | MsG0180003438.01.T01:CDS | 40.0% | |
| CATACCTATGCTTGAAGGAT+AGG | + | Chr1:62294450-62294469 | None:intergenic | 40.0% | |
| CATCTTGACTGTGAACAAGA+AGG | - | Chr1:62295242-62295261 | MsG0180003438.01.T01:CDS | 40.0% | |
| CATTTGATCTACAAGCTTGG+AGG | - | Chr1:62293941-62293960 | MsG0180003438.01.T01:CDS | 40.0% | |
| CTTAATGAAATCCCTGTGTC+CGG | + | Chr1:62294146-62294165 | None:intergenic | 40.0% | |
| CTTCAGGATGTCTACAAGAT+TGG | - | Chr1:62294679-62294698 | MsG0180003438.01.T01:CDS | 40.0% | |
| GCGTTCATTCAAGTATGCAT+GGG | - | Chr1:62294018-62294037 | MsG0180003438.01.T01:CDS | 40.0% | |
| GCTTTCATTGCTTTCGTTCT+TGG | - | Chr1:62294274-62294293 | MsG0180003438.01.T01:CDS | 40.0% | |
| GGTCATTTGATCTACAAGCT+TGG | - | Chr1:62293938-62293957 | MsG0180003438.01.T01:CDS | 40.0% | |
| GTAGATCAAATGACCAACAG+TGG | + | Chr1:62293933-62293952 | None:intergenic | 40.0% | |
| GTCTACAAGATTGGAGGAAT+TGG | - | Chr1:62294688-62294707 | MsG0180003438.01.T01:CDS | 40.0% | |
| GTTATCATCATGAATCACCC+TGG | - | Chr1:62294961-62294980 | MsG0180003438.01.T01:CDS | 40.0% | |
| TACCTATGCTTGAAGGATAG+GGG | + | Chr1:62294448-62294467 | None:intergenic | 40.0% | |
| TGAAGTCATGTCTGTACAGA+TGG | - | Chr1:62294792-62294811 | MsG0180003438.01.T01:intron | 40.0% | |
| TGTAAAGTTAATGGCCTCCT+TGG | + | Chr1:62294935-62294954 | None:intergenic | 40.0% | |
| TTAATGAAATCCCTGTGTCC+GGG | + | Chr1:62294145-62294164 | None:intergenic | 40.0% | |
| ! | AAGAAGAGCACAATCAGCTT+GGG | + | Chr1:62294188-62294207 | None:intergenic | 40.0% |
| ! | AAGCAATGAAAGCATGTTCG+CGG | + | Chr1:62294267-62294286 | None:intergenic | 40.0% |
| ! | AGCCATTTCCAATTTTGCCA+GGG | + | Chr1:62294981-62295000 | None:intergenic | 40.0% |
| ! | TAAGAAGAGCACAATCAGCT+TGG | + | Chr1:62294189-62294208 | None:intergenic | 40.0% |
| ! | TAGCCATTTCCAATTTTGCC+AGG | + | Chr1:62294982-62295001 | None:intergenic | 40.0% |
| ! | TGTGTGATGTTTGGAGTTTG+AGG | + | Chr1:62294911-62294930 | None:intergenic | 40.0% |
| !! | TCATCCTTTTTGAGGACAGT+CGG | - | Chr1:62294490-62294509 | MsG0180003438.01.T01:CDS | 40.0% |
| !! | TTATTGGTCATGTCGACTCT+GGG | - | Chr1:62293900-62293919 | MsG0180003438.01.T01:CDS | 40.0% |
| !! | TTGCTTTCGTTCTTGGTGTT+AGG | - | Chr1:62294281-62294300 | MsG0180003438.01.T01:CDS | 40.0% |
| AATGATCTGCTGCTGCAACA+AGG | - | Chr1:62294306-62294325 | MsG0180003438.01.T01:CDS | 45.0% | |
| ACCTAATCAAGGAGCCTAAG+AGG | - | Chr1:62294629-62294648 | MsG0180003438.01.T01:CDS | 45.0% | |
| AGAAAAAGTCTCTACCACCG+CGG | + | Chr1:62295160-62295179 | None:intergenic | 45.0% | |
| AGCGCTCTACTAAACTTGAC+TGG | - | Chr1:62294575-62294594 | MsG0180003438.01.T01:CDS | 45.0% | |
| ATAGCCGACTGTCCTCAAAA+AGG | + | Chr1:62294497-62294516 | None:intergenic | 45.0% | |
| ATCCCCTATCCTTCAAGCAT+AGG | - | Chr1:62294443-62294462 | MsG0180003438.01.T01:CDS | 45.0% | |
| ATCTCCCTCAAAACCAGAGA+TGG | + | Chr1:62294545-62294564 | None:intergenic | 45.0% | |
| ATGTGTCTAGTGCGCATCTT+AGG | - | Chr1:62294872-62294891 | MsG0180003438.01.T01:CDS | 45.0% | |
| CACCCTGGCAAAATTGGAAA+TGG | - | Chr1:62294976-62294995 | MsG0180003438.01.T01:CDS | 45.0% | |
| CAGAGATATGCGTCAAACTG+TGG | - | Chr1:62295209-62295228 | MsG0180003438.01.T01:CDS | 45.0% | |
| CAGGATGTCTACAAGATTGG+AGG | - | Chr1:62294682-62294701 | MsG0180003438.01.T01:CDS | 45.0% | |
| CGAAGCTCTTGACCTAATCA+AGG | - | Chr1:62294618-62294637 | MsG0180003438.01.T01:CDS | 45.0% | |
| CTTGAAGGATAGGGGATCAA+AGG | + | Chr1:62294440-62294459 | None:intergenic | 45.0% | |
| GAACCCAAATTCTTGACGAG+CGG | - | Chr1:62295099-62295118 | MsG0180003438.01.T01:CDS | 45.0% | |
| GATTGGAGGAATTGGAACTG+TGG | - | Chr1:62294696-62294715 | MsG0180003438.01.T01:CDS | 45.0% | |
| GTGATCTTACCTCTTTCACC+AGG | + | Chr1:62295270-62295289 | None:intergenic | 45.0% | |
| TAATGAAATCCCTGTGTCCG+GGG | + | Chr1:62294144-62294163 | None:intergenic | 45.0% | |
| TAGGTCAAGAGCTTCGAGAA+GGG | + | Chr1:62294614-62294633 | None:intergenic | 45.0% | |
| TCCTGAAGTGGTAATCTGAG+AGG | + | Chr1:62294667-62294686 | None:intergenic | 45.0% | |
| TCTCCCTCAAAACCAGAGAT+GGG | + | Chr1:62294544-62294563 | None:intergenic | 45.0% | |
| TGGTGTCTTGAAACCTGGAA+TGG | - | Chr1:62294738-62294757 | MsG0180003438.01.T01:intron | 45.0% | |
| TGTCTTGAAACCTGGAATGG+TGG | - | Chr1:62294741-62294760 | MsG0180003438.01.T01:intron | 45.0% | |
| TTAGGTCAAGAGCTTCGAGA+AGG | + | Chr1:62294615-62294634 | None:intergenic | 45.0% | |
| ! | AATGATAGTGCAGCGGTACT+TGG | + | Chr1:62294116-62294135 | None:intergenic | 45.0% |
| ! | AGCAATGAAAGCATGTTCGC+GGG | + | Chr1:62294266-62294285 | None:intergenic | 45.0% |
| ! | GGAGCCGGTATTTCTAAGAA+TGG | - | Chr1:62294235-62294254 | MsG0180003438.01.T01:CDS | 45.0% |
| ! | GGCTTGTTTGATAGCCTCTT+AGG | + | Chr1:62294646-62294665 | None:intergenic | 45.0% |
| ! | GTTTGCTAAGCTTCTTGCCA+AGG | - | Chr1:62295044-62295063 | MsG0180003438.01.T01:CDS | 45.0% |
| !! | GCTTGGAGGTATTGCAAAGA+AGG | - | Chr1:62293955-62293974 | MsG0180003438.01.T01:CDS | 45.0% |
| !! | GTTATTGGTCATGTCGACTC+TGG | - | Chr1:62293899-62293918 | MsG0180003438.01.T01:CDS | 45.0% |
| !!! | GTTCCCATCTCTGGTTTTGA+GGG | - | Chr1:62294538-62294557 | MsG0180003438.01.T01:CDS | 45.0% |
| !!! | TGTTCCCATCTCTGGTTTTG+AGG | - | Chr1:62294537-62294556 | MsG0180003438.01.T01:CDS | 45.0% |
| AAATTCTTGACGAGCGGCGA+TGG | - | Chr1:62295105-62295124 | MsG0180003438.01.T01:CDS | 50.0% | |
| AAGAAGGGTCCTGGTGAAAG+AGG | - | Chr1:62295258-62295277 | MsG0180003438.01.T01:CDS | 50.0% | |
| AAGCTTCTTGCCAAGGTGGA+AGG | - | Chr1:62295051-62295070 | MsG0180003438.01.T01:CDS | 50.0% | |
| AATGAAATCCCTGTGTCCGG+GGG | + | Chr1:62294143-62294162 | None:intergenic | 50.0% | |
| ACAACAAAACGGCCGAGTGA+AGG | + | Chr1:62295189-62295208 | None:intergenic | 50.0% | |
| ACTGTGAACAAGAAGGGTCC+TGG | - | Chr1:62295249-62295268 | MsG0180003438.01.T01:CDS | 50.0% | |
| ACTTCATCTTGCAGCCCAGT+TGG | + | Chr1:62294778-62294797 | None:intergenic | 50.0% | |
| AGCTTCTTGCCAAGGTGGAA+GGG | - | Chr1:62295052-62295071 | MsG0180003438.01.T01:CDS | 50.0% | |
| ATCCGACATCATCACCAGGA+AGG | + | Chr1:62294840-62294859 | None:intergenic | 50.0% | |
| ATCGCCGCTCGTCAAGAATT+TGG | + | Chr1:62295106-62295125 | None:intergenic | 50.0% | |
| ATGCGTCAAACTGTGGCTGT+TGG | - | Chr1:62295216-62295235 | MsG0180003438.01.T01:CDS | 50.0% | |
| CAAACATCACACAGCCAAGG+AGG | - | Chr1:62294918-62294937 | MsG0180003438.01.T01:CDS | 50.0% | |
| CTCCAAACATCACACAGCCA+AGG | - | Chr1:62294915-62294934 | MsG0180003438.01.T01:CDS | 50.0% | |
| CTCCTTGGCTGTGTGATGTT+TGG | + | Chr1:62294920-62294939 | None:intergenic | 50.0% | |
| CTGTGGCTGTAGGATGTGTT+AGG | - | Chr1:62294713-62294732 | MsG0180003438.01.T01:CDS | 50.0% | |
| CTTCATCTTGCAGCCCAGTT+GGG | + | Chr1:62294777-62294796 | None:intergenic | 50.0% | |
| GAAAAAGTCTCTACCACCGC+GGG | + | Chr1:62295159-62295178 | None:intergenic | 50.0% | |
| GAGGTGTGGCAGTTAAGAAC+AGG | + | Chr1:62295009-62295028 | None:intergenic | 50.0% | |
| GCAAAAGTCACCACCATTCC+AGG | + | Chr1:62294754-62294773 | None:intergenic | 50.0% | |
| GCAAATCCGACATCATCACC+AGG | + | Chr1:62294844-62294863 | None:intergenic | 50.0% | |
| GCCTCTCAGATTACCACTTC+AGG | - | Chr1:62294663-62294682 | MsG0180003438.01.T01:CDS | 50.0% | |
| GCCTCTTAGGCTCCTTGATT+AGG | + | Chr1:62294633-62294652 | None:intergenic | 50.0% | |
| GCTGTAGGATGTGTTAGGAC+TGG | - | Chr1:62294718-62294737 | MsG0180003438.01.T01:CDS | 50.0% | |
| GGAATTGGAACTGTGGCTGT+AGG | - | Chr1:62294703-62294722 | MsG0180003438.01.T01:CDS | 50.0% | |
| GTCAGAAAACCCTTCCACCT+TGG | + | Chr1:62295064-62295083 | None:intergenic | 50.0% | |
| TCAAGAGCTTCGAGAAGGGT+GGG | + | Chr1:62294610-62294629 | None:intergenic | 50.0% | |
| TCCGACATCATCACCAGGAA+GGG | + | Chr1:62294839-62294858 | None:intergenic | 50.0% | |
| TCGCCGCTCGTCAAGAATTT+GGG | + | Chr1:62295105-62295124 | None:intergenic | 50.0% | |
| TCTGGGAAGTCAACCACTGT+TGG | - | Chr1:62293917-62293936 | MsG0180003438.01.T01:CDS | 50.0% | |
| TGACAGCAATGTAGGAGGTG+TGG | + | Chr1:62295023-62295042 | None:intergenic | 50.0% | |
| TGCACTATCATTGATGCCCC+CGG | - | Chr1:62294124-62294143 | MsG0180003438.01.T01:CDS | 50.0% | |
| TGCTAAGCTTCTTGCCAAGG+TGG | - | Chr1:62295047-62295066 | MsG0180003438.01.T01:CDS | 50.0% | |
| TTCATCTTGCAGCCCAGTTG+GGG | + | Chr1:62294776-62294795 | None:intergenic | 50.0% | |
| ! | AGGACTGGTGTCTTGAAACC+TGG | - | Chr1:62294733-62294752 | MsG0180003438.01.T01:intron | 50.0% |
| ! | GGGCATCAATGATAGTGCAG+CGG | + | Chr1:62294123-62294142 | None:intergenic | 50.0% |
| ! | GGTGGAAGGGTTTTCTGACA+AGG | - | Chr1:62295065-62295084 | MsG0180003438.01.T01:CDS | 50.0% |
| ! | TGGTGACTTTTGCCCCAACT+GGG | - | Chr1:62294761-62294780 | MsG0180003438.01.T01:intron | 50.0% |
| !! | ATCGTTGATTCCACTCCTGC+TGG | - | Chr1:62294208-62294227 | MsG0180003438.01.T01:CDS | 50.0% |
| !!! | GATTCCACTCCTGCTGGTTT+TGG | - | Chr1:62294214-62294233 | MsG0180003438.01.T01:CDS | 50.0% |
| GATGATTCCTACCAAGCCCG+CGG | - | Chr1:62295140-62295159 | MsG0180003438.01.T01:CDS | 55.0% | |
| GTCAAGAGCTTCGAGAAGGG+TGG | + | Chr1:62294611-62294630 | None:intergenic | 55.0% | |
| TCTAGTGCGCATCTTAGGCG+AGG | - | Chr1:62294877-62294896 | MsG0180003438.01.T01:CDS | 55.0% | |
| ! | GCCCTTCCTGGTGATGATGT+CGG | - | Chr1:62294835-62294854 | MsG0180003438.01.T01:intron | 55.0% |
| ! | GTGGTGACTTTTGCCCCAAC+TGG | - | Chr1:62294760-62294779 | MsG0180003438.01.T01:intron | 55.0% |
| !! | ATACCGGCTCCAAAACCAGC+AGG | + | Chr1:62294226-62294245 | None:intergenic | 55.0% |
| !!! | ACTCCTGCTGGTTTTGGAGC+CGG | - | Chr1:62294220-62294239 | MsG0180003438.01.T01:CDS | 55.0% |
| CATTGATGCCCCCGGACACA+GGG | - | Chr1:62294132-62294151 | MsG0180003438.01.T01:CDS | 60.0% | |
| CTCAAGGCTGAGCGCGAAAG+AGG | - | Chr1:62294052-62294071 | MsG0180003438.01.T01:CDS | 60.0% | |
| GATCTCACTGAGGCCCTTCC+TGG | - | Chr1:62294823-62294842 | MsG0180003438.01.T01:intron | 60.0% | |
| GGACCGTGCAGATCTCACTG+AGG | - | Chr1:62294813-62294832 | MsG0180003438.01.T01:intron | 60.0% | |
| GGCTCCAAAACCAGCAGGAG+TGG | + | Chr1:62294221-62294240 | None:intergenic | 60.0% | |
| GGGCCTCAGTGAGATCTGCA+CGG | + | Chr1:62294819-62294838 | None:intergenic | 60.0% | |
| TCATTGATGCCCCCGGACAC+AGG | - | Chr1:62294131-62294150 | MsG0180003438.01.T01:CDS | 60.0% | |
| TTCTTGACGAGCGGCGATGG+TGG | - | Chr1:62295108-62295127 | MsG0180003438.01.T01:CDS | 60.0% | |
| AGTCTCTACCACCGCGGGCT+TGG | + | Chr1:62295154-62295173 | None:intergenic | 65.0% | |
| GATTCCTACCAAGCCCGCGG+TGG | - | Chr1:62295143-62295162 | MsG0180003438.01.T01:CDS | 65.0% | |
| ! | TCTACCACCGCGGGCTTGGT+AGG | + | Chr1:62295150-62295169 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 62293834 | 62295335 | 62293834 | ID=MsG0180003438.01;Name=MsG0180003438.01 |
| Chr1 | mRNA | 62293834 | 62295335 | 62293834 | ID=MsG0180003438.01.T01;Parent=MsG0180003438.01;Name=MsG0180003438.01.T01;_AED=0.42;_eAED=0.42;_QI=32|1|0.5|1|1|1|2|0|455 |
| Chr1 | exon | 62293834 | 62294739 | 62293834 | ID=MsG0180003438.01.T01:exon:23480;Parent=MsG0180003438.01.T01 |
| Chr1 | exon | 62294842 | 62295335 | 62294842 | ID=MsG0180003438.01.T01:exon:23479;Parent=MsG0180003438.01.T01 |
| Chr1 | five_prime_UTR | 62295304 | 62295335 | 62295304 | ID=MsG0180003438.01.T01:five_prime_utr;Parent=MsG0180003438.01.T01 |
| Chr1 | CDS | 62294842 | 62295303 | 62294842 | ID=MsG0180003438.01.T01:cds;Parent=MsG0180003438.01.T01 |
| Chr1 | CDS | 62293834 | 62294739 | 62293834 | ID=MsG0180003438.01.T01:cds;Parent=MsG0180003438.01.T01 |
| Gene Sequence |
| Protein sequence |
