AlfalfaGEDB | MsG0280006456.01

M. sativa cultivar ZhongmuNo.1 / MsG0280006456.01

KEGG: -
GO: -
PFAM: PF03101

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006456.01.T01	PNX94274.1	65	220	77	0	15	234	13	232	4.02E-100	318

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006456.01.T01	Q9LKR4	30.864	162	108	3	48	206	67	227	1.47E-17	85.1

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006456.01.T01	A0A2K3MU72	65.000	220	77	0	15	234	13	232	1.92e-100	318

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047869.01	MsG0280006456.01	0.812582	3.942602e-51	2.516349e-48
MsG0080047912.01	MsG0280006456.01	0.826029	3.394836e-54	3.146867e-51
MsG0080048764.01	MsG0280006456.01	0.810337	1.212183e-50	7.287079e-48
MsG0180000065.01	MsG0280006456.01	0.802262	6.099606e-49	2.974500e-46
MsG0180000257.01	MsG0280006456.01	0.805849	1.094590e-49	5.852723e-47
MsG0180000470.01	MsG0280006456.01	0.827038	1.950118e-54	1.860754e-51
MsG0180001410.01	MsG0280006456.01	0.811009	8.674454e-51	5.309718e-48
MsG0180001663.01	MsG0280006456.01	0.805950	1.042128e-49	5.586489e-47
MsG0180002089.01	MsG0280006456.01	0.831840	1.328936e-55	1.459583e-52
MsG0180002195.01	MsG0280006456.01	0.817415	3.337597e-52	2.429172e-49
MsG0180002870.01	MsG0280006456.01	0.802384	5.755554e-49	2.815651e-46
MsG0180002940.01	MsG0280006456.01	-0.803771	2.973459e-49	1.507060e-46
MsG0180003438.01	MsG0280006456.01	0.818258	2.152869e-52	1.603450e-49
MsG0180003669.01	MsG0280006456.01	0.815677	8.176994e-52	5.674988e-49
MsG0180004085.01	MsG0280006456.01	0.804908	1.723665e-49	8.996572e-47
MsG0180004157.01	MsG0280006456.01	0.819353	1.214068e-52	9.319790e-50
MsG0180004264.01	MsG0280006456.01	0.803416	3.522683e-49	1.769227e-46
MsG0180004388.01	MsG0280006456.01	0.810282	1.245439e-50	7.476247e-48
MsG0180004426.01	MsG0280006456.01	0.800340	1.508958e-48	7.008970e-46
MsG0180004600.01	MsG0280006456.01	0.821877	3.195915e-53	2.632615e-50
MsG0180005050.01	MsG0280006456.01	0.816529	5.277745e-52	3.748919e-49
MsG0180006016.01	MsG0280006456.01	0.801733	7.832610e-49	3.768461e-46
MsG0180006023.01	MsG0280006456.01	0.809670	1.686972e-50	9.966436e-48
MsG0280006456.01	MsG0280007311.01	0.807439	5.051909e-50	2.813893e-47
MsG0280006456.01	MsG0280007458.01	0.820562	6.423668e-53	5.100095e-50
MsG0280006456.01	MsG0280007609.01	0.802184	6.326963e-49	3.079210e-46
MsG0280006456.01	MsG0280007610.01	0.805287	1.435999e-49	7.567658e-47
MsG0280006456.01	MsG0280008349.01	0.805269	1.448547e-49	7.630086e-47
MsG0280006456.01	MsG0280008615.01	0.802173	6.361442e-49	3.095159e-46
MsG0280006456.01	MsG0280008907.01	0.803757	2.992782e-49	1.516353e-46
MsG0280006456.01	MsG0280008971.01	0.820313	7.328005e-53	5.778100e-50
MsG0280006456.01	MsG0280009637.01	-0.804371	2.230516e-49	1.148104e-46
MsG0280006456.01	MsG0280010389.01	0.820585	6.346007e-53	5.041473e-50
MsG0280006456.01	MsG0280010443.01	0.829470	5.056847e-55	5.180280e-52
MsG0280006456.01	MsG0280010551.01	0.845602	3.665685e-59	6.141099e-56
MsG0280006456.01	MsG0280011032.01	0.822656	2.108328e-53	1.775722e-50
MsG0280006456.01	MsG0280011070.01	0.809592	1.753165e-50	1.033611e-47
MsG0280006456.01	MsG0280011156.01	0.825927	3.589186e-54	3.317567e-51
MsG0280006456.01	MsG0380011870.01	0.863353	2.644509e-64	7.993962e-61
MsG0280006456.01	MsG0380012702.01	0.810869	9.301120e-51	5.671741e-48
MsG0280006456.01	MsG0380014135.01	0.803637	3.170740e-49	1.601514e-46
MsG0280006456.01	MsG0380014251.01	0.807075	6.034066e-50	3.329192e-47
MsG0280006456.01	MsG0380014573.01	0.827738	1.325726e-54	1.290994e-51
MsG0280006456.01	MsG0380014770.01	0.824013	1.015830e-53	8.889294e-51
MsG0280006456.01	MsG0380015566.01	0.803024	4.245606e-49	2.110886e-46
MsG0280006456.01	MsG0380015779.01	0.805707	1.172162e-49	6.244853e-47
MsG0280006456.01	MsG0380016475.01	0.865276	6.640393e-65	2.148000e-61
MsG0280006456.01	MsG0380016581.01	0.826179	3.125936e-54	2.910079e-51
MsG0280006456.01	MsG0380016624.01	0.826371	2.814768e-54	2.634824e-51
MsG0280006456.01	MsG0380017233.01	0.816903	4.350194e-52	3.121956e-49
MsG0280006456.01	MsG0380017266.01	-0.829185	5.930944e-55	6.025673e-52
MsG0280006456.01	MsG0380017551.01	-0.813305	2.737342e-51	1.781140e-48
MsG0280006456.01	MsG0380017680.01	0.804793	1.821860e-49	9.480263e-47
MsG0280006456.01	MsG0380018009.01	0.809777	1.599913e-50	9.479081e-48
MsG0280006456.01	MsG0480018331.01	0.806964	6.370254e-50	3.504598e-47
MsG0280006456.01	MsG0480018883.01	0.805161	1.525552e-49	8.013810e-47
MsG0280006456.01	MsG0480018964.01	0.816333	5.838007e-52	4.125054e-49
MsG0280006456.01	MsG0480018970.01	0.813129	2.992858e-51	1.937943e-48
MsG0280006456.01	MsG0480020090.01	0.828556	8.419665e-55	8.397683e-52
MsG0280006456.01	MsG0480020445.01	0.803580	3.257823e-49	1.643215e-46
MsG0280006456.01	MsG0480020839.01	0.807713	4.419810e-50	2.479431e-47
MsG0280006456.01	MsG0480021274.01	0.828759	7.518070e-55	7.542227e-52
MsG0280006456.01	MsG0480021350.01	0.823074	1.684750e-53	1.435885e-50
MsG0280006456.01	MsG0480021853.01	0.822802	1.949584e-53	1.648752e-50
MsG0280006456.01	MsG0480022052.01	-0.818435	1.963328e-52	1.469642e-49
MsG0280006456.01	MsG0480022480.01	0.811880	5.611057e-51	3.514031e-48
MsG0280006456.01	MsG0480022482.01	0.816023	6.847130e-52	4.797131e-49
MsG0280006456.01	MsG0480022615.01	-0.813358	2.665150e-51	1.736729e-48
MsG0280006456.01	MsG0480023248.01	0.823879	1.092144e-53	9.522186e-51
MsG0280006456.01	MsG0480023270.01	0.801383	9.241731e-49	4.407375e-46
MsG0280006456.01	MsG0480023654.01	0.811322	7.418366e-51	4.577777e-48
MsG0280006456.01	MsG0480023707.01	0.814660	1.375729e-51	9.286318e-49
MsG0280006456.01	MsG0480024005.01	0.803415	3.524798e-49	1.770226e-46
MsG0280006456.01	MsG0580024073.01	0.804971	1.672035e-49	8.740697e-47
MsG0280006456.01	MsG0580024114.01	0.802692	4.971683e-49	2.451241e-46
MsG0280006456.01	MsG0580024621.01	0.835671	1.465443e-56	1.804533e-53
MsG0280006456.01	MsG0580024632.01	0.819833	9.435229e-53	7.341400e-50
MsG0280006456.01	MsG0580024945.01	0.815379	9.530190e-52	6.559841e-49
MsG0280006456.01	MsG0580025758.01	0.802484	5.489513e-49	2.692147e-46
MsG0280006456.01	MsG0580025936.01	0.814815	1.271215e-51	8.616856e-49
MsG0280006456.01	MsG0580026165.01	0.804311	2.295703e-49	1.179809e-46
MsG0280006456.01	MsG0580026777.01	0.826369	2.818163e-54	2.637806e-51
MsG0280006456.01	MsG0580027228.01	0.808786	2.609497e-50	1.505625e-47
MsG0280006456.01	MsG0580027344.01	0.807716	4.412362e-50	2.475439e-47
MsG0280006456.01	MsG0580027687.01	0.834691	2.589298e-56	3.095616e-53
MsG0280006456.01	MsG0580027688.01	0.859278	4.619594e-63	1.213294e-59
MsG0280006456.01	MsG0580027833.01	0.808968	2.385832e-50	1.383306e-47
MsG0280006456.01	MsG0580027926.01	0.813101	3.034407e-51	1.963366e-48
MsG0280006456.01	MsG0580028527.01	0.822024	2.955079e-53	2.444251e-50
MsG0280006456.01	MsG0580028990.01	0.816342	5.811893e-52	4.107571e-49
MsG0280006456.01	MsG0580029204.01	0.827062	1.924705e-54	1.837836e-51
MsG0280006456.01	MsG0580029554.01	0.843675	1.210794e-58	1.908671e-55
MsG0280006456.01	MsG0680030316.01	0.838093	3.528959e-57	4.676940e-54
MsG0280006456.01	MsG0680030366.01	0.802271	6.072247e-49	2.961881e-46
MsG0280006456.01	MsG0680030667.01	0.821690	3.531457e-53	2.893470e-50
MsG0280006456.01	MsG0680030800.01	0.807166	5.772606e-50	3.192577e-47
MsG0280006456.01	MsG0680031020.01	0.811969	5.365897e-51	3.368635e-48
MsG0280006456.01	MsG0680031096.01	0.805552	1.263507e-49	6.703972e-47
MsG0280006456.01	MsG0680031114.01	0.807722	4.399898e-50	2.468870e-47
MsG0280006456.01	MsG0680032095.01	0.834576	2.767392e-56	3.297974e-53
MsG0280006456.01	MsG0680032801.01	0.821862	3.221772e-53	2.652803e-50
MsG0280006456.01	MsG0680032844.01	0.814099	1.830391e-51	1.216923e-48
MsG0280006456.01	MsG0680032996.01	0.810294	1.238255e-50	7.435417e-48
MsG0280006456.01	MsG0680033228.01	0.801662	8.101161e-49	3.890632e-46
MsG0280006456.01	MsG0680033379.01	0.841144	5.677409e-58	8.265891e-55
MsG0280006456.01	MsG0680033391.01	0.809590	1.755065e-50	1.034683e-47
MsG0280006456.01	MsG0680033460.01	0.810402	1.173700e-50	7.067789e-48
MsG0280006456.01	MsG0680033792.01	0.839286	1.734841e-57	2.384553e-54
MsG0280006456.01	MsG0680034450.01	0.800116	1.675594e-48	7.738446e-46
MsG0280006456.01	MsG0680035346.01	0.802274	6.063727e-49	2.957946e-46
MsG0280006456.01	MsG0780035948.01	0.806802	6.892181e-50	3.775984e-47
MsG0280006456.01	MsG0780036498.01	0.840395	8.924537e-58	1.269588e-54
MsG0280006456.01	MsG0780038495.01	0.804836	1.784260e-49	9.295264e-47
MsG0280006456.01	MsG0780038827.01	0.829974	3.810971e-55	3.961751e-52
MsG0280006456.01	MsG0780040576.01	-0.806590	7.638652e-50	4.162138e-47
MsG0280006456.01	MsG0780040929.01	0.801845	7.428639e-49	3.584489e-46
MsG0280006456.01	MsG0780041376.01	0.802559	5.295870e-49	2.602122e-46
MsG0280006456.01	MsG0780041456.01	0.811463	6.915207e-51	4.283377e-48
MsG0280006456.01	MsG0880042055.01	0.812101	5.020805e-51	3.163378e-48
MsG0280006456.01	MsG0880042294.01	0.801291	9.652389e-49	4.592595e-46
MsG0280006456.01	MsG0880042301.01	0.812828	3.484188e-51	2.237959e-48
MsG0280006456.01	MsG0880042404.01	0.803878	2.825203e-49	1.435943e-46
MsG0280006456.01	MsG0880042800.01	0.824991	5.979496e-54	5.381572e-51
MsG0280006456.01	MsG0880044415.01	0.838968	2.097608e-57	2.855164e-54
MsG0280006456.01	MsG0880044455.01	-0.809728	1.639021e-50	9.698063e-48
MsG0280006456.01	MsG0880044542.01	0.837259	5.776821e-57	7.462022e-54
MsG0280006456.01	MsG0880044554.01	0.835830	1.335489e-56	1.652360e-53
MsG0280006456.01	MsG0880044573.01	0.802375	5.779219e-49	2.826586e-46
MsG0280006456.01	MsG0880044574.01	0.823800	1.139298e-53	9.911499e-51
MsG0280006456.01	MsG0880045583.01	0.813347	2.680405e-51	1.746121e-48
MsG0280006456.01	MsG0880045653.01	0.805937	1.048554e-49	5.619156e-47
MsG0280006456.01	MsG0880046479.01	0.805717	1.166799e-49	6.217729e-47
MsG0280006456.01	MsG0880046973.01	0.801944	7.090845e-49	3.429850e-46
MsG0280006456.01	MsG0880047191.01	0.835677	1.459606e-56	1.797756e-53
MsG0280006456.01	MsG0880047425.01	0.839285	1.736106e-57	2.386205e-54
MsG0280006456.01	MsG0880047689.01	-0.809272	2.054079e-50	1.200696e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006456.01.T01	MTR_2g101460	76.316	190	37	1	1	190	20	201	7.45e-91	267
MsG0280006456.01.T01	MTR_2g101460	76.316	190	37	1	1	190	10	191	2.06e-90	265
MsG0280006456.01.T01	MTR_3g448650	97.321	112	3	0	1	112	47	158	5.64e-76	228
MsG0280006456.01.T01	MTR_1g070355	45.622	217	118	0	18	234	56	272	1.89e-62	205
MsG0280006456.01.T01	MTR_6g022080	42.391	184	106	0	16	199	65	248	3.72e-50	165
MsG0280006456.01.T01	MTR_5g076070	42.268	194	112	0	41	234	58	251	3.60e-48	160
MsG0280006456.01.T01	MTR_1g052260	59.615	104	42	0	15	118	55	158	1.26e-40	137
MsG0280006456.01.T01	MTR_6g053140	42.308	130	67	2	17	145	84	206	2.21e-27	105
MsG0280006456.01.T01	MTR_8g066350	37.589	141	66	2	8	144	47	169	2.95e-25	98.2
MsG0280006456.01.T01	MTR_7g446520	30.732	205	122	3	27	229	79	265	2.77e-22	94.0
MsG0280006456.01.T01	MTR_0060s0090	42.683	82	47	0	39	120	59	140	9.83e-20	83.2
MsG0280006456.01.T01	MTR_7g028855	31.507	146	100	0	32	177	116	261	6.82e-18	82.8
MsG0280006456.01.T01	MTR_3g450850	31.088	193	117	6	48	227	59	248	4.81e-16	76.6
MsG0280006456.01.T01	MTR_0402s0040	25.837	209	145	5	38	239	28	233	4.10e-15	74.7
MsG0280006456.01.T01	MTR_4g050510	29.921	127	75	1	46	172	88	200	6.18e-15	71.6
MsG0280006456.01.T01	MTR_0604s0020	45.333	75	41	0	46	120	2	76	8.84e-15	67.8
MsG0280006456.01.T01	MTR_6g463250	37.143	105	51	2	16	120	68	157	1.34e-14	70.1
MsG0280006456.01.T01	MTR_1g008290	30.952	126	83	3	93	215	2	126	7.29e-12	62.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006456.01.T01	AT5G28530	30.864	162	108	3	48	206	67	227	1.50e-18	85.1
MsG0280006456.01.T01	AT5G28530	30.864	162	108	3	48	206	67	227	1.64e-18	84.7
MsG0280006456.01.T01	AT5G28530	30.864	162	108	3	48	206	67	227	1.64e-18	84.7
MsG0280006456.01.T01	AT5G28530	30.864	162	108	3	48	206	67	227	1.68e-18	84.7
MsG0280006456.01.T01	AT5G28530	30.864	162	108	3	48	206	67	227	1.92e-18	84.7
MsG0280006456.01.T01	AT4G38180	33.654	208	126	7	28	229	67	268	1.03e-16	79.7
MsG0280006456.01.T01	AT1G10240	32.576	132	84	3	47	174	59	189	8.90e-14	70.9
MsG0280006456.01.T01	AT1G10240	32.576	132	84	3	47	174	59	189	8.90e-14	70.9

Find 29 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTATAAGCCACTGCAATATT+TGG	0.202241	2:-2182924	None:intergenic
TTGCATCACTTTATGGAGTT+TGG	0.282438	2:+2182786	None:intergenic
ATTGAAGGAATGGAAGATAT+AGG	0.332722	2:+2182849	MsG0280006456.01.T01:CDS
ATTAGAACTTCACAAGCTTA+TGG	0.352387	2:+2183305	MsG0280006456.01.T01:CDS
AGTGATGTGAAAGTTGGATT+TGG	0.354794	2:+2182819	MsG0280006456.01.T01:CDS
GTAGTCAACGTTGGTATGTA+TGG	0.377945	2:+2183162	MsG0280006456.01.T01:CDS
ATCAATGTGCACACTACATT+TGG	0.382053	2:-2183135	None:intergenic
TTGGATTTCTTCCGGGTCAC+AGG	0.383991	2:+2183231	MsG0280006456.01.T01:CDS
TGTAGTGTGCACATTGATTC+TGG	0.404970	2:+2183140	MsG0280006456.01.T01:CDS
AATTGGTATGCTCGAATGAA+TGG	0.408021	2:+2182954	MsG0280006456.01.T01:CDS
TTGAAGGAATGGAAGATATA+GGG	0.408538	2:+2182850	MsG0280006456.01.T01:CDS
TAGTGATTCTAGAGCTGCTT+TGG	0.425882	2:+2183421	MsG0280006456.01.T01:CDS
ATAGAAAGTGATGTGAAAGT+TGG	0.433335	2:+2182813	MsG0280006456.01.T01:CDS
CATGTACAATGAAGTTGATA+AGG	0.435376	2:+2183382	MsG0280006456.01.T01:CDS
GGATTTGGATTTGCTATTGA+AGG	0.453071	2:+2182834	MsG0280006456.01.T01:CDS
TGGATTTCTTCCGGGTCACA+GGG	0.456241	2:+2183232	MsG0280006456.01.T01:CDS
GATAAGGATAGACGAAGTAA+AGG	0.470352	2:+2183398	MsG0280006456.01.T01:CDS
CTGCTCGTAGAAGCAAAGTA+AGG	0.491172	2:+2182982	MsG0280006456.01.T01:CDS
GATTTCTTCCGGGTCACAGG+GGG	0.500838	2:+2183234	MsG0280006456.01.T01:CDS
TGGATTTGCTATTGAAGGAA+TGG	0.513659	2:+2182839	MsG0280006456.01.T01:CDS
ATTTCTTCCGGGTCACAGGG+GGG	0.543862	2:+2183235	MsG0280006456.01.T01:CDS
TAGTCAACGTTGGTATGTAT+GGG	0.562663	2:+2183163	MsG0280006456.01.T01:CDS
CAATAAAATCATCATCGACA+AGG	0.586633	2:-2183211	None:intergenic
GTGAGGCAAGAGCTGACACT+AGG	0.593063	2:+2183099	MsG0280006456.01.T01:CDS
CATCGACAAGGCTATGATTG+TGG	0.600537	2:-2183199	None:intergenic
TTGATTCTGGTAGTCAACGT+TGG	0.631816	2:+2183153	MsG0280006456.01.T01:CDS
ATATTTGTTTGCTACAGACA+AGG	0.641722	2:+2183035	MsG0280006456.01.T01:CDS
CAATAAAATCTGTAAGCGTG+AGG	0.648827	2:+2183082	MsG0280006456.01.T01:CDS
GGATTTCTTCCGGGTCACAG+GGG	0.653981	2:+2183233	MsG0280006456.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ACTTTCTAAGATTTTTCATT+TGG	-	Chr2:2183280-2183299	None:intergenic	20.0%
!	ATGAAAAATCTTAGAAAGTC+TGG	+	Chr2:2183281-2183300	MsG0280006456.01.T01:CDS	25.0%
!!	TGATTTTATTGGATTTCTTC+CGG	+	Chr2:2183223-2183242	MsG0280006456.01.T01:CDS	25.0%
!!	TGGCTTATACATTTTACAAT+TGG	+	Chr2:2182937-2182956	MsG0280006456.01.T01:CDS	25.0%
	ATAGAAAGTGATGTGAAAGT+TGG	+	Chr2:2182813-2182832	MsG0280006456.01.T01:CDS	30.0%
	ATTAGAACTTCACAAGCTTA+TGG	+	Chr2:2183305-2183324	MsG0280006456.01.T01:CDS	30.0%
	ATTGAAGGAATGGAAGATAT+AGG	+	Chr2:2182849-2182868	MsG0280006456.01.T01:CDS	30.0%
	CAATAAAATCATCATCGACA+AGG	-	Chr2:2183214-2183233	None:intergenic	30.0%
	TTGAAGGAATGGAAGATATA+GGG	+	Chr2:2182850-2182869	MsG0280006456.01.T01:CDS	30.0%
!	ATATTTGTTTGCTACAGACA+AGG	+	Chr2:2183035-2183054	MsG0280006456.01.T01:CDS	30.0%
!	CTTGTCGATGATGATTTTAT+TGG	+	Chr2:2183212-2183231	MsG0280006456.01.T01:CDS	30.0%
!	GATTTTATTGGATTTCTTCC+GGG	+	Chr2:2183224-2183243	MsG0280006456.01.T01:CDS	30.0%
!	TCATTTTCCAAATATTGCAG+TGG	+	Chr2:2182917-2182936	MsG0280006456.01.T01:CDS	30.0%
!!	CATGTACAATGAAGTTGATA+AGG	+	Chr2:2183382-2183401	MsG0280006456.01.T01:CDS	30.0%
	AATTGGTATGCTCGAATGAA+TGG	+	Chr2:2182954-2182973	MsG0280006456.01.T01:CDS	35.0%
	AGTGATGTGAAAGTTGGATT+TGG	+	Chr2:2182819-2182838	MsG0280006456.01.T01:CDS	35.0%
	ATCAATGTGCACACTACATT+TGG	-	Chr2:2183138-2183157	None:intergenic	35.0%
	CAATAAAATCTGTAAGCGTG+AGG	+	Chr2:2183082-2183101	MsG0280006456.01.T01:CDS	35.0%
	GATAAGGATAGACGAAGTAA+AGG	+	Chr2:2183398-2183417	MsG0280006456.01.T01:CDS	35.0%
	GTATAAGCCACTGCAATATT+TGG	-	Chr2:2182927-2182946	None:intergenic	35.0%
	GTATTCCTCAAAAACATTGC+TGG	-	Chr2:2183476-2183495	None:intergenic	35.0%
	TAGTCAACGTTGGTATGTAT+GGG	+	Chr2:2183163-2183182	MsG0280006456.01.T01:CDS	35.0%
!!	ATGATCCAGCAATGTTTTTG+AGG	+	Chr2:2183468-2183487	MsG0280006456.01.T01:CDS	35.0%
!!	GGATTTGGATTTGCTATTGA+AGG	+	Chr2:2182834-2182853	MsG0280006456.01.T01:CDS	35.0%
!!	TGGATTTGCTATTGAAGGAA+TGG	+	Chr2:2182839-2182858	MsG0280006456.01.T01:CDS	35.0%
	GTAGTCAACGTTGGTATGTA+TGG	+	Chr2:2183162-2183181	MsG0280006456.01.T01:CDS	40.0%
	TTGATTCTGGTAGTCAACGT+TGG	+	Chr2:2183153-2183172	MsG0280006456.01.T01:CDS	40.0%
!	ACTTTTGCTAATCACTACGG+GGG	+	Chr2:2183329-2183348	MsG0280006456.01.T01:CDS	40.0%
!	CACTTTTGCTAATCACTACG+GGG	+	Chr2:2183328-2183347	MsG0280006456.01.T01:CDS	40.0%
!	GCACTTTTGCTAATCACTAC+GGG	+	Chr2:2183327-2183346	MsG0280006456.01.T01:CDS	40.0%
!	GGCACTTTTGCTAATCACTA+CGG	+	Chr2:2183326-2183345	MsG0280006456.01.T01:CDS	40.0%
!!	TAGTGATTCTAGAGCTGCTT+TGG	+	Chr2:2183421-2183440	MsG0280006456.01.T01:CDS	40.0%
!!	TGTAGTGTGCACATTGATTC+TGG	+	Chr2:2183140-2183159	MsG0280006456.01.T01:CDS	40.0%
!!!	ACAGTTGTCGCGTCATTTTT+CGG	+	Chr2:2183494-2183513	MsG0280006456.01.T01:CDS	40.0%
	CATCGACAAGGCTATGATTG+TGG	-	Chr2:2183202-2183221	None:intergenic	45.0%
	CTGCTCGTAGAAGCAAAGTA+AGG	+	Chr2:2182982-2183001	MsG0280006456.01.T01:CDS	45.0%
!!!	GCGTCATTTTTCGGAGATCA+AGG	+	Chr2:2183503-2183522	MsG0280006456.01.T01:CDS	45.0%
	TGGATTTCTTCCGGGTCACA+GGG	+	Chr2:2183232-2183251	MsG0280006456.01.T01:CDS	50.0%
	TTGGATTTCTTCCGGGTCAC+AGG	+	Chr2:2183231-2183250	MsG0280006456.01.T01:CDS	50.0%
	ATTTCTTCCGGGTCACAGGG+GGG	+	Chr2:2183235-2183254	MsG0280006456.01.T01:CDS	55.0%
	GATTTCTTCCGGGTCACAGG+GGG	+	Chr2:2183234-2183253	MsG0280006456.01.T01:CDS	55.0%
	GGATTTCTTCCGGGTCACAG+GGG	+	Chr2:2183233-2183252	MsG0280006456.01.T01:CDS	55.0%
	GTGAGGCAAGAGCTGACACT+AGG	+	Chr2:2183099-2183118	MsG0280006456.01.T01:CDS	55.0%
	TCATCCACCCCCCTGTGACC+CGG	-	Chr2:2183245-2183264	None:intergenic	65.0%
	TCTTCCGGGTCACAGGGGGG+TGG	+	Chr2:2183238-2183257	MsG0280006456.01.T01:CDS	70.0%

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	2182798	2183544	2182798	ID=MsG0280006456.01;Name=MsG0280006456.01
Chr2	mRNA	2182798	2183544	2182798	ID=MsG0280006456.01.T01;Parent=MsG0280006456.01;Name=MsG0280006456.01.T01;_AED=0.45;_eAED=0.45;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|248
Chr2	exon	2182798	2183544	2182798	ID=MsG0280006456.01.T01:exon:327;Parent=MsG0280006456.01.T01
Chr2	CDS	2182798	2183544	2182798	ID=MsG0280006456.01.T01:cds;Parent=MsG0280006456.01.T01

Gene Sequence

>MsG0280006456.01.T01

ATGGAGTTTGGAGATATAGAAAGTGATGTGAAAGTTGGATTTGGATTTGCTATTGAAGGAATGGAAGATATAGGGAAAATTGATTTTAAAAAATTAAATGCAAGTGATGTTATGAAGTTTCATTTTCCAAATATTGCAGTGGCTTATACATTTTACAATTGGTATGCTCGAATGAATGGTTTTTCTGCTCGTAGAAGCAAAGTAAGGAGAAACAAAAACAACGAGATTATACAACAAATATTTGTTTGCTACAGACAAGGTTTCAGAGAAAAAAAGCTTGAGAACAATAAAATCTGTAAGCGTGAGGCAAGAGCTGACACTAGGTGCAGATGTGATGCCAAATGTAGTGTGCACATTGATTCTGGTAGTCAACGTTGGTATGTATGGGATTTTAACAATGACCACAATCATAGCCTTGTCGATGATGATTTTATTGGATTTCTTCCGGGTCACAGGGGGGTGGATGATGATGACATTCTCCAAATGAAAAATCTTAGAAAGTCTGGTATTAGAACTTCACAAGCTTATGGCACTTTTGCTAATCACTACGGGGGATACAAAAATGTGACATTTTTGATACAAGACATGTACAATGAAGTTGATAAGGATAGACGAAGTAAAGGTAGTGATTCTAGAGCTGCTTTGGCATTTTTACACTCTCTGAAGATTGATGATCCAGCAATGTTTTTGAGGAATACAGTTGTCGCGTCATTTTTCGGAGATCAAGGCTATTTGATTAGCTTTTGA

Protein sequence

>MsG0280006456.01.T01

MEFGDIESDVKVGFGFAIEGMEDIGKIDFKKLNASDVMKFHFPNIAVAYTFYNWYARMNGFSARRSKVRRNKNNEIIQQIFVCYRQGFREKKLENNKICKREARADTRCRCDAKCSVHIDSGSQRWYVWDFNNDHNHSLVDDDFIGFLPGHRGVDDDDILQMKNLRKSGIRTSQAYGTFANHYGGYKNVTFLIQDMYNEVDKDRRSKGSDSRAALAFLHSLKIDDPAMFLRNTVVASFFGDQGYLISF*