AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022827.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022827.01.T01 MTR_4g094755 77.333 525 14 4 1 426 1 519 0.0 787
MsG0480022827.01.T01 MTR_4g094755 77.992 518 15 3 1 419 1 518 0.0 787
MsG0480022827.01.T01 MTR_5g004960 29.721 323 193 12 13 324 370 669 6.57e-25 108
MsG0480022827.01.T01 MTR_5g004960 29.721 323 193 12 13 324 370 669 7.30e-25 108
MsG0480022827.01.T01 MTR_5g004960 29.721 323 193 12 13 324 370 669 7.43e-25 108
MsG0480022827.01.T01 MTR_5g005030 27.922 308 187 10 12 308 98 381 9.18e-20 92.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022827.01.T01 AT5G44740 66.590 434 89 3 1 378 1 434 0.0 584
MsG0480022827.01.T01 AT5G44740 63.488 367 78 3 68 378 1 367 2.77e-161 468
MsG0480022827.01.T01 AT5G44740 61.027 331 73 3 104 378 20 350 1.16e-136 404
MsG0480022827.01.T01 AT5G44750 30.861 337 186 11 13 329 374 683 4.61e-26 111
MsG0480022827.01.T01 AT5G44750 30.861 337 182 11 13 329 374 679 1.20e-25 110
MsG0480022827.01.T01 AT1G49980 28.065 310 184 9 12 308 103 386 3.00e-19 90.9
MsG0480022827.01.T01 AT1G49980 28.065 310 184 9 12 308 103 386 3.00e-19 90.9
MsG0480022827.01.T01 AT1G49980 28.065 310 184 9 12 308 103 386 3.85e-19 90.5
MsG0480022827.01.T01 AT1G49980 28.065 310 184 9 12 308 103 386 3.85e-19 90.5
MsG0480022827.01.T01 AT1G49980 28.065 310 184 9 12 308 103 386 3.85e-19 90.5
MsG0480022827.01.T01 AT1G49980 28.065 310 184 9 12 308 103 386 3.85e-19 90.5
MsG0480022827.01.T01 AT1G49980 28.065 310 184 9 12 308 103 386 5.17e-19 90.1

Find 99 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACATGTTCCACGCTTTC+AGG 0.161323 4:-77214021 None:intergenic
AGAGGAAGCAACCAAGTTTA+AGG 0.221168 4:+77213502 MsG0480022827.01.T01:CDS
TGCTGCTCAAACAATGTTAA+TGG 0.232370 4:+77213990 MsG0480022827.01.T01:CDS
AAATCTTGTCCTTTAAGATA+TGG 0.238114 4:+77216948 MsG0480022827.01.T01:CDS
AGTTCTCAAGTCACATGTTT+TGG 0.238366 4:+77214050 MsG0480022827.01.T01:CDS
CAACGTTATGGGATCAATAC+TGG 0.259543 4:+77215972 MsG0480022827.01.T01:CDS
CTAACGGCAGTGAAAATAAA+TGG 0.269737 4:+77217051 MsG0480022827.01.T01:CDS
TTCACTCCTGTGTCTTCTTC+AGG 0.283118 4:-77217667 None:intergenic
TTTGTAGTCCCATATCTTAA+AGG 0.296103 4:-77216957 None:intergenic
CATTCGAGTTGTAATTCATT+AGG 0.305762 4:-77217643 None:intergenic
TGTTGATCTAGACACGCTTT+TGG 0.312822 4:-77217694 None:intergenic
CTTAAAGGACAAGATTTAGA+AGG 0.316078 4:-77216942 None:intergenic
AGTCATTGCTCACGTTGATA+TGG 0.325646 4:+77213364 MsG0480022827.01.T01:CDS
CTTGAACCAATTGAATTTGC+AGG 0.338791 4:-77213740 None:intergenic
GGAGAAGAAAGAAAGAGATT+TGG 0.346794 4:+77213272 MsG0480022827.01.T01:five_prime_UTR
TCTGCATGCTAGAGCATATA+AGG 0.354360 4:+77216749 MsG0480022827.01.T01:CDS
TCAACATTGGCTTAATGAAC+TGG 0.361658 4:+77216659 MsG0480022827.01.T01:CDS
CTTCCCAAGAGCCATGGTTC+TGG 0.370821 4:+77216320 MsG0480022827.01.T01:CDS
ATCCAGATTGAAATAGAGTT+AGG 0.378895 4:-77216995 None:intergenic
AGCAGGTAGTGAAAATTGTT+TGG 0.383668 4:+77217612 MsG0480022827.01.T01:intron
AATCTTGTCCTTTAAGATAT+GGG 0.384366 4:+77216949 MsG0480022827.01.T01:CDS
TCGACCCTTGCGCGAAAGAA+TGG 0.386927 4:-77213923 None:intergenic
ATGGATTGCTTCTACGTTCA+AGG 0.391815 4:+77213383 MsG0480022827.01.T01:CDS
AGCTATGAAGCTCGCAAATC+TGG 0.392570 4:+77213585 MsG0480022827.01.T01:CDS
GCCCTAACTCTATTTCAATC+TGG 0.399449 4:+77216993 MsG0480022827.01.T01:CDS
GTCTTCAAAGCTTGAGGCCC+AGG 0.409170 4:-77216353 None:intergenic
GAGAAGCTACAACAACGTTA+TGG 0.417449 4:+77215960 MsG0480022827.01.T01:CDS
GGCACAACTGTTTGTTGTGC+AGG 0.421149 4:-77215565 None:intergenic
ACTTCCTTACAAAGTGATCT+TGG 0.434353 4:+77215900 MsG0480022827.01.T01:CDS
GATGCCAAGATCACTTTGTA+AGG 0.435099 4:-77215904 None:intergenic
GAGGAAGCAACCAAGTTTAA+GGG 0.441760 4:+77213503 MsG0480022827.01.T01:CDS
AAAAGCGTGTCTAGATCAAC+AGG 0.442157 4:+77217696 MsG0480022827.01.T01:CDS
GAAGAAAGAAAGAGATTTGG+AGG 0.442767 4:+77213275 MsG0480022827.01.T01:five_prime_UTR
TTAGCTTTACCGCGTGCTAC+AGG 0.443323 4:-77213765 None:intergenic
GAAACAGCTTGGAGGAAAGC+TGG 0.444488 4:+77215875 MsG0480022827.01.T01:CDS
TAACGGCAGTGAAAATAAAT+GGG 0.445670 4:+77217052 MsG0480022827.01.T01:CDS
AGAAGCTACAACAACGTTAT+GGG 0.445780 4:+77215961 MsG0480022827.01.T01:CDS
AGCCTGCCTGCAAATTCAAT+TGG 0.448194 4:+77213734 MsG0480022827.01.T01:CDS
GAAAGAGATTTGGAGGGAAA+AGG 0.469764 4:+77213282 MsG0480022827.01.T01:five_prime_UTR
TTTCCAGAACCATGGCTCTT+GGG 0.469924 4:-77216323 None:intergenic
GCGAGAAGAGAGAGTTGTGA+TGG 0.473469 4:+77213338 MsG0480022827.01.T01:CDS
CTGCATTCCTGTATGTATTG+AGG 0.473538 4:-77213788 None:intergenic
TTCAGTACAACTCCTACAAA+GGG 0.477383 4:+77213544 MsG0480022827.01.T01:CDS
GTAGGCAAGCCCCTTAAACT+TGG 0.479601 4:-77213513 None:intergenic
GCTTTCAGGAAACAGCTTGG+AGG 0.510942 4:+77215867 MsG0480022827.01.T01:intron
GTTTCCATTCTTTCGCGCAA+GGG 0.511441 4:+77213919 MsG0480022827.01.T01:CDS
GTGCCACATTCATCTGTTGA+AGG 0.513413 4:+77215583 MsG0480022827.01.T01:CDS
CTCAATACATACAGGAATGC+AGG 0.515776 4:+77213789 MsG0480022827.01.T01:CDS
AACCAATTGAATTTGCAGGC+AGG 0.518560 4:-77213736 None:intergenic
TTGGCTTTCAGGAAACAGCT+TGG 0.521521 4:+77215864 MsG0480022827.01.T01:intron
TAACATTGTTTGAGCAGCAT+CGG 0.522683 4:-77213986 None:intergenic
CTCGCAAATCTGGTGTCAAA+CGG 0.523258 4:+77213595 MsG0480022827.01.T01:CDS
AAACAGCTTGGAGGAAAGCT+GGG 0.523685 4:+77215876 MsG0480022827.01.T01:CDS
ATAGAGTTAGGGCATCCTCT+TGG 0.524492 4:-77216983 None:intergenic
TGTTTCCATTCTTTCGCGCA+AGG 0.525442 4:+77213918 MsG0480022827.01.T01:CDS
AGCATTGCAGTACTTGGCTG+TGG 0.527570 4:+77216252 MsG0480022827.01.T01:intron
TTAAAGGACAAGATTTAGAA+GGG 0.529814 4:-77216941 None:intergenic
TCCAGATTGAAATAGAGTTA+GGG 0.534381 4:-77216994 None:intergenic
GTTCAGTACAACTCCTACAA+AGG 0.537378 4:+77213543 MsG0480022827.01.T01:CDS
TGCCACATTCATCTGTTGAA+GGG 0.538597 4:+77215584 MsG0480022827.01.T01:CDS
CTGACATGGATCAAAACAAA+CGG 0.546133 4:+77216709 MsG0480022827.01.T01:CDS
CAACATTGGCTTAATGAACT+GGG 0.546144 4:+77216660 MsG0480022827.01.T01:CDS
AATCAGCGGAGAAGAAGTTG+AGG 0.548506 4:+77216289 MsG0480022827.01.T01:CDS
AAGCTAACCTCAATACATAC+AGG 0.551066 4:+77213781 MsG0480022827.01.T01:CDS
AACGTTATGGGATCAATACT+GGG 0.560625 4:+77215973 MsG0480022827.01.T01:CDS
TGAAAGCGTGGAACATGTTG+AGG 0.566017 4:+77214023 MsG0480022827.01.T01:CDS
GCGATTGTCTTCAAAGCTTG+AGG 0.571750 4:-77216359 None:intergenic
TTTGATCCATGTCAGAGTCA+AGG 0.580710 4:-77216701 None:intergenic
ATCAGCGGAGAAGAAGTTGA+GGG 0.589659 4:+77216290 MsG0480022827.01.T01:CDS
TAGCTTTACCGCGTGCTACA+GGG 0.589812 4:-77213764 None:intergenic
AGGAAGCAACCAAGTTTAAG+GGG 0.598039 4:+77213504 MsG0480022827.01.T01:CDS
TTGTACTGAACAACTGCAGT+AGG 0.601929 4:-77213531 None:intergenic
AAGAAAGAAAGAGATTTGGA+GGG 0.603400 4:+77213276 MsG0480022827.01.T01:five_prime_UTR
CGACTACTTCCCAAGAGCCA+TGG 0.611151 4:+77216314 MsG0480022827.01.T01:CDS
GGAAACTCCTCCTGAAAGCG+TGG 0.613918 4:+77214011 MsG0480022827.01.T01:CDS
TGAACGCCTTGACTCTGACA+TGG 0.615794 4:+77216695 MsG0480022827.01.T01:CDS
AATGCGTGGCGATGAAGCAA+AGG 0.616345 4:+77213710 MsG0480022827.01.T01:CDS
ATACAGGAATGCAGGTTCAG+AGG 0.618464 4:+77213797 MsG0480022827.01.T01:CDS
ACATGTTCCACGCTTTCAGG+AGG 0.622571 4:-77214018 None:intergenic
ACTTGATTGCAGTGGAACAG+AGG 0.624243 4:+77213484 MsG0480022827.01.T01:intron
GATCTTGGCATCAACACCGT+TGG 0.625005 4:+77215915 MsG0480022827.01.T01:CDS
TTGTACAACTCTAAGACTAA+CGG 0.629649 4:+77217035 MsG0480022827.01.T01:CDS
GCAAATATTAGATGACCGCA+AGG 0.633252 4:+77217815 MsG0480022827.01.T01:intron
GAGAGAGAGAGGTATGCGGG+TGG 0.657926 4:+77213316 MsG0480022827.01.T01:exon
AAACTGAAGCAGATCACCAA+CGG 0.665670 4:-77215931 None:intergenic
TTGTTTGAGCAGCATCGGTG+AGG 0.666748 4:-77213981 None:intergenic
TGAGAGAGCTTCAATTGATG+AGG 0.669380 4:+77213948 MsG0480022827.01.T01:CDS
AACAGCTTGGAGGAAAGCTG+GGG 0.669741 4:+77215877 MsG0480022827.01.T01:CDS
AACCCTTCAACAGATGAATG+TGG 0.684076 4:-77215586 None:intergenic
AACGGCAGTGAAAATAAATG+GGG 0.684334 4:+77217053 MsG0480022827.01.T01:CDS
GTTCAAGTCCCTGTAGCACG+CGG 0.689011 4:+77213756 MsG0480022827.01.T01:CDS
TCAGCGGAGAAGAAGTTGAG+GGG 0.689369 4:+77216291 MsG0480022827.01.T01:CDS
TGGCTGTGGAATATTGCGAG+AGG 0.692385 4:+77216266 MsG0480022827.01.T01:CDS
AATATTAGATGACCGCAAGG+TGG 0.699196 4:+77217818 MsG0480022827.01.T01:intron
CAGTACAACTCCTACAAAGG+GGG 0.706282 4:+77213546 MsG0480022827.01.T01:CDS
AATATTGCGAGAGGAATCAG+CGG 0.711561 4:+77216275 MsG0480022827.01.T01:CDS
GAATGTCCTGAAGAAGACAC+AGG 0.726806 4:+77217661 MsG0480022827.01.T01:CDS
TCAGTACAACTCCTACAAAG+GGG 0.727028 4:+77213545 MsG0480022827.01.T01:CDS
TGGGACTACAAAGATCCAAG+AGG 0.730216 4:+77216968 MsG0480022827.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATTAATTAAATTAAATTG+GGG - Chr4:77213458-77213477 None:intergenic 10.0%
!!! AATTTTTTTGATTTTTATGT+TGG + Chr4:77216527-77216546 MsG0480022827.01.T01:intron 10.0%
!! AAAAATTCATATACTGTAAA+TGG + Chr4:77217772-77217791 MsG0480022827.01.T01:intron 15.0%
!! AAAACCATACAAATAAATAA+AGG + Chr4:77214898-77214917 MsG0480022827.01.T01:intron 15.0%
!! ATAAAATTCAGATTTAACAT+TGG - Chr4:77214271-77214290 None:intergenic 15.0%
!! TTTATGAAGCATAATAAAAT+AGG + Chr4:77214928-77214947 MsG0480022827.01.T01:intron 15.0%
!!! ATAACCTTTATTTATTTGTA+TGG - Chr4:77214905-77214924 None:intergenic 15.0%
!!! ATTTAAAATGCTTTTTATTC+AGG + Chr4:77215220-77215239 MsG0480022827.01.T01:intron 15.0%
!!! TTAAAGTTATTTGTTTTAGT+TGG + Chr4:77214157-77214176 MsG0480022827.01.T01:intron 15.0%
!!! TTATTTGTATGGTTTTTTAA+GGG - Chr4:77214894-77214913 None:intergenic 15.0%
!!! TTATTTTTCTTTTATTTGTG+TGG + Chr4:77217321-77217340 MsG0480022827.01.T01:intron 15.0%
!!! TTTATTTGTATGGTTTTTTA+AGG - Chr4:77214895-77214914 None:intergenic 15.0%
!! AATATCATTATGTGATCTAA+AGG - Chr4:77217368-77217387 None:intergenic 20.0%
!! TCACTAAATTGTTATCTATA+TGG - Chr4:77214330-77214349 None:intergenic 20.0%
!! TGATATATGACATAACATTA+TGG - Chr4:77214452-77214471 None:intergenic 20.0%
!! TGATTGTTAATTTCAAAAGT+GGG + Chr4:77214122-77214141 MsG0480022827.01.T01:intron 20.0%
!!! CCTCTTTTACTTTTTATTTT+CGG - Chr4:77213254-77213273 None:intergenic 20.0%
!!! GATCTTAGTAATTTTAACAT+GGG - Chr4:77215805-77215824 None:intergenic 20.0%
!!! GATTTTTTGATAGGTTTTAA+TGG + Chr4:77217844-77217863 MsG0480022827.01.T01:CDS 20.0%
!!! TAAATCTGAATTTTATTGTG+TGG + Chr4:77214275-77214294 MsG0480022827.01.T01:intron 20.0%
!!! TATTCACTCATGTTAAATTT+TGG + Chr4:77213875-77213894 MsG0480022827.01.T01:intron 20.0%
!!! TGATCTTAGTAATTTTAACA+TGG - Chr4:77215806-77215825 None:intergenic 20.0%
!!! TTATTTGTGTTTTAACATAG+AGG + Chr4:77215999-77216018 MsG0480022827.01.T01:intron 20.0%
!!! TTGGTGATTTTGAATTTTAA+AGG + Chr4:77213894-77213913 MsG0480022827.01.T01:intron 20.0%
!!! TTGTCTTTGTTTTTAAGATA+TGG - Chr4:77214374-77214393 None:intergenic 20.0%
!!! TTTGAAGTTTATGAATCAAA+TGG + Chr4:77215726-77215745 MsG0480022827.01.T01:intron 20.0%
!!! TTTTCCTTTACAAAAAAACA+AGG + Chr4:77215756-77215775 MsG0480022827.01.T01:intron 20.0%
! AAAAATTGTCATCCTAGTTA+AGG - Chr4:77216120-77216139 None:intergenic 25.0%
! AATGCTGTAAAAGTTAAAAC+AGG - Chr4:77216238-77216257 None:intergenic 25.0%
! ATTGAACTTCATTTGTATCT+AGG + Chr4:77217394-77217413 MsG0480022827.01.T01:intron 25.0%
! ATTTGAATTGAGGATCAAAA+TGG - Chr4:77213637-77213656 None:intergenic 25.0%
! CCGAAAATAAAAAGTAAAAG+AGG + Chr4:77213251-77213270 MsG0480022827.01.T01:five_prime_UTR 25.0%
! GCACTAATGTTATTATTGAA+AGG + Chr4:77215641-77215660 MsG0480022827.01.T01:intron 25.0%
! GTGATTGTTAATTTCAAAAG+TGG + Chr4:77214121-77214140 MsG0480022827.01.T01:intron 25.0%
! TAACAATTTAGTGAAAGCTT+AGG + Chr4:77214336-77214355 MsG0480022827.01.T01:intron 25.0%
! TAGATCAACAGGTATATTAA+TGG + Chr4:77217707-77217726 MsG0480022827.01.T01:intron 25.0%
! TTAAAGGACAAGATTTAGAA+GGG - Chr4:77216944-77216963 None:intergenic 25.0%
! TTGAACTTCATTTGTATCTA+GGG + Chr4:77217395-77217414 MsG0480022827.01.T01:intron 25.0%
! TTGATTAAGATTCAAGGATT+GGG + Chr4:77216557-77216576 MsG0480022827.01.T01:intron 25.0%
!!! AAAATGCTTTTTATTCAGGA+TGG + Chr4:77215224-77215243 MsG0480022827.01.T01:intron 25.0%
!!! AAACTTCTAGCACTTTATTT+TGG + Chr4:77216412-77216431 MsG0480022827.01.T01:intron 25.0%
!!! AAATCTTGTCCTTTAAGATA+TGG + Chr4:77216948-77216967 MsG0480022827.01.T01:CDS 25.0%
!!! AAGTTATTTGTTTTAGTTGG+CGG + Chr4:77214160-77214179 MsG0480022827.01.T01:intron 25.0%
!!! AATCTTGTCCTTTAAGATAT+GGG + Chr4:77216949-77216968 MsG0480022827.01.T01:CDS 25.0%
!!! ACAACCTTGTTTTTTTGTAA+AGG - Chr4:77215763-77215782 None:intergenic 25.0%
!!! ATTTTTGAATAAAGAGCATG+TGG + Chr4:77215193-77215212 MsG0480022827.01.T01:intron 25.0%
!!! GTTTTGTTGATTAAGATTCA+AGG + Chr4:77216551-77216570 MsG0480022827.01.T01:intron 25.0%
!!! TCATTTTTTTCTTGCAGAAA+GGG + Chr4:77216895-77216914 MsG0480022827.01.T01:intron 25.0%
!!! TTCATTTTTTTCTTGCAGAA+AGG + Chr4:77216894-77216913 MsG0480022827.01.T01:intron 25.0%
AAGAAAGAAAGAGATTTGGA+GGG + Chr4:77213276-77213295 MsG0480022827.01.T01:five_prime_UTR 30.0%
ACAATATTACAGAGAGAATC+TGG - Chr4:77214720-77214739 None:intergenic 30.0%
ATCCAGATTGAAATAGAGTT+AGG - Chr4:77216998-77217017 None:intergenic 30.0%
ATGAAAAATTGAATGCCTCA+TGG + Chr4:77214232-77214251 MsG0480022827.01.T01:intron 30.0%
ATGATGCTAAAGAAGAAGTT+AGG + Chr4:77215249-77215268 MsG0480022827.01.T01:intron 30.0%
ATGCATGCATATTTACGAAT+TGG - Chr4:77216149-77216168 None:intergenic 30.0%
ATTCCACTGTAATTTGATTG+AGG + Chr4:77217578-77217597 MsG0480022827.01.T01:intron 30.0%
CAATATTACAGAGAGAATCT+GGG - Chr4:77214719-77214738 None:intergenic 30.0%
CTAAACACACATTTGAATTG+AGG - Chr4:77213647-77213666 None:intergenic 30.0%
CTACAACTTTACAAACATCA+AGG - Chr4:77215479-77215498 None:intergenic 30.0%
CTTAAAGGACAAGATTTAGA+AGG - Chr4:77216945-77216964 None:intergenic 30.0%
GAGATCGCAAAAATAAAATC+AGG - Chr4:77216045-77216064 None:intergenic 30.0%
GTGTGATATTGAAGAAAACT+TGG + Chr4:77215845-77215864 MsG0480022827.01.T01:intron 30.0%
GTTGATTAAGATTCAAGGAT+TGG + Chr4:77216556-77216575 MsG0480022827.01.T01:intron 30.0%
TAACATAGAGGAACATAGTT+TGG + Chr4:77216011-77216030 MsG0480022827.01.T01:intron 30.0%
TAACGGCAGTGAAAATAAAT+GGG + Chr4:77217052-77217071 MsG0480022827.01.T01:CDS 30.0%
TCAAAATGGTTGTATCGAAT+AGG - Chr4:77213623-77213642 None:intergenic 30.0%
TCACTCAAAGATAGTGAAAA+TGG - Chr4:77216824-77216843 None:intergenic 30.0%
TCCAGATTGAAATAGAGTTA+GGG - Chr4:77216997-77217016 None:intergenic 30.0%
TGAACTTCATTTGTATCTAG+GGG + Chr4:77217396-77217415 MsG0480022827.01.T01:intron 30.0%
TGATGTTTGTAAAGTTGTAG+TGG + Chr4:77215479-77215498 MsG0480022827.01.T01:intron 30.0%
TGTTAATTTCAAAAGTGGGT+GGG + Chr4:77214126-77214145 MsG0480022827.01.T01:intron 30.0%
TTCAAACTTACAGATGGTAT+GGG - Chr4:77217116-77217135 None:intergenic 30.0%
TTGGATTACTAACTTGATTG+TGG + Chr4:77217140-77217159 MsG0480022827.01.T01:intron 30.0%
TTGTTAATTTCAAAAGTGGG+TGG + Chr4:77214125-77214144 MsG0480022827.01.T01:intron 30.0%
TTTGTAGTCCCATATCTTAA+AGG - Chr4:77216960-77216979 None:intergenic 30.0%
! CTTTTGCCAAACAAATTCAT+GGG + Chr4:77215138-77215157 MsG0480022827.01.T01:intron 30.0%
! GACTTGTAGATTTTGTAGTA+TGG - Chr4:77214633-77214652 None:intergenic 30.0%
! GGTTTTTACAATCATGATGA+TGG + Chr4:77217793-77217812 MsG0480022827.01.T01:intron 30.0%
! GTGCGTTACATTTTCTTTAT+CGG - Chr4:77215625-77215644 None:intergenic 30.0%
! TAGAAAATATGGTGGAAACT+CGG - Chr4:77214684-77214703 None:intergenic 30.0%
! TCCACCATATTTTCTATGAT+CGG + Chr4:77214688-77214707 MsG0480022827.01.T01:intron 30.0%
! TCTTTTGCCAAACAAATTCA+TGG + Chr4:77215137-77215156 MsG0480022827.01.T01:intron 30.0%
! TTCAAAAGAAAGTACATTCG+AGG - Chr4:77215712-77215731 None:intergenic 30.0%
! TTTTGCCAAACAAATTCATG+GGG + Chr4:77215139-77215158 MsG0480022827.01.T01:intron 30.0%
!! AAGGTGTTGTAAGAAATTTG+GGG - Chr4:77215443-77215462 None:intergenic 30.0%
!! CATTCGAGTTGTAATTCATT+AGG - Chr4:77217646-77217665 None:intergenic 30.0%
!! GAAGGTGTTGTAAGAAATTT+GGG - Chr4:77215444-77215463 None:intergenic 30.0%
!! GAGGTATTTCTTTTATCATC+AGG + Chr4:77213816-77213835 MsG0480022827.01.T01:intron 30.0%
!! TTGTACAACTCTAAGACTAA+CGG + Chr4:77217035-77217054 MsG0480022827.01.T01:CDS 30.0%
!!! ACATCTAGTTTTTTTCCTTC+AGG + Chr4:77216635-77216654 MsG0480022827.01.T01:intron 30.0%
!!! AGGTGGATAGATTTTTTGAT+AGG + Chr4:77217835-77217854 MsG0480022827.01.T01:CDS 30.0%
!!! ATCTGGATTACGTGATTTTT+TGG + Chr4:77217010-77217029 MsG0480022827.01.T01:CDS 30.0%
!!! CATTTTTTTCTTGCAGAAAG+GGG + Chr4:77216896-77216915 MsG0480022827.01.T01:intron 30.0%
!!! CGCTTATTTTATTCTTGTGT+TGG + Chr4:77214802-77214821 MsG0480022827.01.T01:intron 30.0%
!!! GTTTCACAATCACTTTTTTC+CGG + Chr4:77213414-77213433 MsG0480022827.01.T01:intron 30.0%
!!! TCTGGATTACGTGATTTTTT+GGG + Chr4:77217011-77217030 MsG0480022827.01.T01:CDS 30.0%
AAAAGTGATTGTGAAACCCT+AGG - Chr4:77213411-77213430 None:intergenic 35.0%
AAACCTTACTTACTGGGATA+AGG - Chr4:77214408-77214427 None:intergenic 35.0%
AACGGCAGTGAAAATAAATG+GGG + Chr4:77217053-77217072 MsG0480022827.01.T01:CDS 35.0%
AACGTTATGGGATCAATACT+GGG + Chr4:77215973-77215992 MsG0480022827.01.T01:CDS 35.0%
AAGCAGTTCAAACTTACAGA+TGG - Chr4:77217122-77217141 None:intergenic 35.0%
AAGCTAACCTCAATACATAC+AGG + Chr4:77213781-77213800 MsG0480022827.01.T01:CDS 35.0%
ACCGATCATAGAAAATATGG+TGG - Chr4:77214692-77214711 None:intergenic 35.0%
ACTTCCTTACAAAGTGATCT+TGG + Chr4:77215900-77215919 MsG0480022827.01.T01:CDS 35.0%
AGAAGCTACAACAACGTTAT+GGG + Chr4:77215961-77215980 MsG0480022827.01.T01:CDS 35.0%
AGACTAGACGATATAGGATT+AGG - Chr4:77214746-77214765 None:intergenic 35.0%
AGCAGGTAGTGAAAATTGTT+TGG + Chr4:77217612-77217631 MsG0480022827.01.T01:intron 35.0%
AGGTCAGAGGTTATTCTTAA+AGG + Chr4:77214085-77214104 MsG0480022827.01.T01:intron 35.0%
ATCTGTAAGTTTGAACTGCT+TGG + Chr4:77217121-77217140 MsG0480022827.01.T01:intron 35.0%
CAAAAAATCTATCCACCTTG+CGG - Chr4:77217833-77217852 None:intergenic 35.0%
CAAACGCATAGCTTAGAATA+CGG - Chr4:77217296-77217315 None:intergenic 35.0%
CAATGACATTATCTACCGAT+TGG - Chr4:77217478-77217497 None:intergenic 35.0%
CTAAAGAAGAAGTTAGGAAG+TGG + Chr4:77215255-77215274 MsG0480022827.01.T01:intron 35.0%
CTAACGGCAGTGAAAATAAA+TGG + Chr4:77217051-77217070 MsG0480022827.01.T01:CDS 35.0%
CTGACATGGATCAAAACAAA+CGG + Chr4:77216709-77216728 MsG0480022827.01.T01:CDS 35.0%
CTGCATGTATTACCTTAACT+AGG + Chr4:77216105-77216124 MsG0480022827.01.T01:intron 35.0%
CTTAGTTTCTCAAAGGTCTT+GGG + Chr4:77216482-77216501 MsG0480022827.01.T01:intron 35.0%
CTTGAACCAATTGAATTTGC+AGG - Chr4:77213743-77213762 None:intergenic 35.0%
GAAGAAAGAAAGAGATTTGG+AGG + Chr4:77213275-77213294 MsG0480022827.01.T01:five_prime_UTR 35.0%
GAAGTTGAAATTTACAGTGC+CGG - Chr4:77213436-77213455 None:intergenic 35.0%
GCGTAATTATAAACAAGCCA+AGG - Chr4:77215421-77215440 None:intergenic 35.0%
GGAGAAGAAAGAAAGAGATT+TGG + Chr4:77213272-77213291 MsG0480022827.01.T01:five_prime_UTR 35.0%
GTTCAAACTTACAGATGGTA+TGG - Chr4:77217117-77217136 None:intergenic 35.0%
TAAAACTTGCATCCTGAGTT+CGG - Chr4:77215342-77215361 None:intergenic 35.0%
TAACATTGTTTGAGCAGCAT+CGG - Chr4:77213989-77214008 None:intergenic 35.0%
TAAGCTAATGAAGCGTATCA+CGG - Chr4:77215103-77215122 None:intergenic 35.0%
TACTAACTTGATTGTGGTTC+AGG + Chr4:77217146-77217165 MsG0480022827.01.T01:intron 35.0%
TAGCCTCAATCAAATTACAG+TGG - Chr4:77217584-77217603 None:intergenic 35.0%
TCAAACTTACAGATGGTATG+GGG - Chr4:77217115-77217134 None:intergenic 35.0%
TGCTGCTCAAACAATGTTAA+TGG + Chr4:77213990-77214009 MsG0480022827.01.T01:CDS 35.0%
TTATCCCAGTAAGTAAGGTT+TGG + Chr4:77214407-77214426 MsG0480022827.01.T01:intron 35.0%
TTCAGTACAACTCCTACAAA+GGG + Chr4:77213544-77213563 MsG0480022827.01.T01:CDS 35.0%
TTCAGTGAGACATTTCCATA+CGG + Chr4:77217440-77217459 MsG0480022827.01.T01:intron 35.0%
TTTCTTACAACACCTTCCTT+AGG + Chr4:77215447-77215466 MsG0480022827.01.T01:intron 35.0%
TTTGCCAAACAAATTCATGG+GGG + Chr4:77215140-77215159 MsG0480022827.01.T01:intron 35.0%
! AAGAAAAGCTACTAGCTTGT+GGG + Chr4:77215303-77215322 MsG0480022827.01.T01:intron 35.0%
! AAGTTAGGAAGTGGATTTGT+AGG + Chr4:77215264-77215283 MsG0480022827.01.T01:intron 35.0%
! ACCTTTGAGAAACTAAGGAT+TGG - Chr4:77216479-77216498 None:intergenic 35.0%
! AGAAGTATAGCTTGAGACAT+GGG - Chr4:77215070-77215089 None:intergenic 35.0%
! AGAGAAGATCTAAAACCTGA+AGG - Chr4:77217521-77217540 None:intergenic 35.0%
! AGTTCTCAAGTCACATGTTT+TGG + Chr4:77214050-77214069 MsG0480022827.01.T01:CDS 35.0%
! ATAGCTTAGAATACGGACTA+CGG - Chr4:77217289-77217308 None:intergenic 35.0%
! ATTTTCACGTAAAATGCGAC+TGG - Chr4:77217745-77217764 None:intergenic 35.0%
! CCTTTGAGAAACTAAGGATT+GGG - Chr4:77216478-77216497 None:intergenic 35.0%
! GAAATGTTTTTCCAGAACCA+TGG - Chr4:77216334-77216353 None:intergenic 35.0%
! GTAATGTTACTTGATTGCAG+TGG + Chr4:77213476-77213495 MsG0480022827.01.T01:intron 35.0%
! GTTCTCAAGTCACATGTTTT+GGG + Chr4:77214051-77214070 MsG0480022827.01.T01:CDS 35.0%
! TGATATCGCTATCTGTTTTG+AGG - Chr4:77217201-77217220 None:intergenic 35.0%
! TGCCTTATTATGAGCAATAC+CGG - Chr4:77215390-77215409 None:intergenic 35.0%
! TTCTCAAGTCACATGTTTTG+GGG + Chr4:77214052-77214071 MsG0480022827.01.T01:CDS 35.0%
! TTGAAGAAAACTTGGCTTTC+AGG + Chr4:77215853-77215872 MsG0480022827.01.T01:intron 35.0%
! TTTTACAGCATTGCAGTACT+TGG + Chr4:77216246-77216265 MsG0480022827.01.T01:intron 35.0%
!! AGAATGGTGTGTTTGATTTG+TGG - Chr4:77214771-77214790 None:intergenic 35.0%
!! AGCACCGATCATAGAAAATA+TGG - Chr4:77214695-77214714 None:intergenic 35.0%
!! CAACATTGGCTTAATGAACT+GGG + Chr4:77216660-77216679 MsG0480022827.01.T01:CDS 35.0%
!! GGAAGGTGTTGTAAGAAATT+TGG - Chr4:77215445-77215464 None:intergenic 35.0%
!! GTTCTGGAAAAACATTTCCT+GGG + Chr4:77216336-77216355 MsG0480022827.01.T01:CDS 35.0%
!! TCAACATTGGCTTAATGAAC+TGG + Chr4:77216659-77216678 MsG0480022827.01.T01:CDS 35.0%
!! TTTGTTTTCAGTTCAATGCG+TGG + Chr4:77213696-77213715 MsG0480022827.01.T01:intron 35.0%
!! TTTTCCTTCAGGTTCAACAT+TGG + Chr4:77216646-77216665 MsG0480022827.01.T01:intron 35.0%
!!! TGCGATCTCATGTTTTTAGT+AGG + Chr4:77216056-77216075 MsG0480022827.01.T01:intron 35.0%
!!! TGTTTTGGGGCTTCAAATTA+AGG + Chr4:77214065-77214084 MsG0480022827.01.T01:CDS 35.0%
AAACTGAAGCAGATCACCAA+CGG - Chr4:77215934-77215953 None:intergenic 40.0%
AACCAATTGAATTTGCAGGC+AGG - Chr4:77213739-77213758 None:intergenic 40.0%
AACCCTTCAACAGATGAATG+TGG - Chr4:77215589-77215608 None:intergenic 40.0%
AAGCGTAGCAAAGATGAGAA+TGG - Chr4:77214787-77214806 None:intergenic 40.0%
AATATTAGATGACCGCAAGG+TGG + Chr4:77217818-77217837 MsG0480022827.01.T01:intron 40.0%
AATATTGCGAGAGGAATCAG+CGG + Chr4:77216275-77216294 MsG0480022827.01.T01:CDS 40.0%
ACCAGCAATGTTGTATGCAA+CGG - Chr4:77214847-77214866 None:intergenic 40.0%
AGAGGAAGCAACCAAGTTTA+AGG + Chr4:77213502-77213521 MsG0480022827.01.T01:CDS 40.0%
AGGAAGCAACCAAGTTTAAG+GGG + Chr4:77213504-77213523 MsG0480022827.01.T01:CDS 40.0%
AGTATGGAGAGTAGATCATG+CGG - Chr4:77214617-77214636 None:intergenic 40.0%
AGTCATTGCTCACGTTGATA+TGG + Chr4:77213364-77213383 MsG0480022827.01.T01:CDS 40.0%
AGTGAGCCAAAAAGACTCAA+AGG - Chr4:77214989-77215008 None:intergenic 40.0%
CAACGTTATGGGATCAATAC+TGG + Chr4:77215972-77215991 MsG0480022827.01.T01:CDS 40.0%
CCCAATCCTTAGTTTCTCAA+AGG + Chr4:77216475-77216494 MsG0480022827.01.T01:intron 40.0%
CCTTAGTTTCTCAAAGGTCT+TGG + Chr4:77216481-77216500 MsG0480022827.01.T01:intron 40.0%
CGGTTCTTCATCAAACCAAT+CGG + Chr4:77217460-77217479 MsG0480022827.01.T01:intron 40.0%
CTCAATACATACAGGAATGC+AGG + Chr4:77213789-77213808 MsG0480022827.01.T01:CDS 40.0%
CTGCATTCCTGTATGTATTG+AGG - Chr4:77213791-77213810 None:intergenic 40.0%
CTTATTATGAGCAATACCGG+CGG - Chr4:77215387-77215406 None:intergenic 40.0%
GAAAGAGATTTGGAGGGAAA+AGG + Chr4:77213282-77213301 MsG0480022827.01.T01:five_prime_UTR 40.0%
GAGAAGCTACAACAACGTTA+TGG + Chr4:77215960-77215979 MsG0480022827.01.T01:CDS 40.0%
GAGGAAGCAACCAAGTTTAA+GGG + Chr4:77213503-77213522 MsG0480022827.01.T01:CDS 40.0%
GATGCCAAGATCACTTTGTA+AGG - Chr4:77215907-77215926 None:intergenic 40.0%
GCAAATATTAGATGACCGCA+AGG + Chr4:77217815-77217834 MsG0480022827.01.T01:intron 40.0%
GCATAAAACCTCTGATGAAG+AGG - Chr4:77216860-77216879 None:intergenic 40.0%
GCCCTAACTCTATTTCAATC+TGG + Chr4:77216993-77217012 MsG0480022827.01.T01:CDS 40.0%
GTAAGTAAGGTTTGGCTACA+TGG + Chr4:77214415-77214434 MsG0480022827.01.T01:intron 40.0%
GTAGCCAAACCTTACTTACT+GGG - Chr4:77214414-77214433 None:intergenic 40.0%
GTGGTAAGACTAGACGATAT+AGG - Chr4:77214752-77214771 None:intergenic 40.0%
GTTCAGTACAACTCCTACAA+AGG + Chr4:77213543-77213562 MsG0480022827.01.T01:CDS 40.0%
TAAGCCAATGTTGAACCTGA+AGG - Chr4:77216653-77216672 None:intergenic 40.0%
TCAGTACAACTCCTACAAAG+GGG + Chr4:77213545-77213564 MsG0480022827.01.T01:CDS 40.0%
TCTGCATGCTAGAGCATATA+AGG + Chr4:77216749-77216768 MsG0480022827.01.T01:CDS 40.0%
TGAGAGAGCTTCAATTGATG+AGG + Chr4:77213948-77213967 MsG0480022827.01.T01:CDS 40.0%
TGCCACATTCATCTGTTGAA+GGG + Chr4:77215584-77215603 MsG0480022827.01.T01:CDS 40.0%
TGGTTTGATGAAGAACCGTA+TGG - Chr4:77217458-77217477 None:intergenic 40.0%
TGTAGCCAAACCTTACTTAC+TGG - Chr4:77214415-77214434 None:intergenic 40.0%
TGTGCGTTCATGGTTTCTTA+TGG + Chr4:77216168-77216187 MsG0480022827.01.T01:intron 40.0%
TTCTACGTTCAAGGTTCCTA+GGG + Chr4:77213392-77213411 MsG0480022827.01.T01:intron 40.0%
TTGTACTGAACAACTGCAGT+AGG - Chr4:77213534-77213553 None:intergenic 40.0%
TTTGATCCATGTCAGAGTCA+AGG - Chr4:77216704-77216723 None:intergenic 40.0%
! AAAAGCGTGTCTAGATCAAC+AGG + Chr4:77217696-77217715 MsG0480022827.01.T01:CDS 40.0%
! AAGCCTTATCCCAGTAAGTA+AGG + Chr4:77214402-77214421 MsG0480022827.01.T01:intron 40.0%
! AGAAAAGCTACTAGCTTGTG+GGG + Chr4:77215304-77215323 MsG0480022827.01.T01:intron 40.0%
! AGTCCACCTTTGAGTCTTTT+TGG + Chr4:77214980-77214999 MsG0480022827.01.T01:intron 40.0%
! ATGGATTGCTTCTACGTTCA+AGG + Chr4:77213383-77213402 MsG0480022827.01.T01:CDS 40.0%
! CAAGAAAAGCTACTAGCTTG+TGG + Chr4:77215302-77215321 MsG0480022827.01.T01:intron 40.0%
! CACAAGCTAGTAGCTTTTCT+TGG - Chr4:77215304-77215323 None:intergenic 40.0%
! CAGAAGTATAGCTTGAGACA+TGG - Chr4:77215071-77215090 None:intergenic 40.0%
! CATACCCCCATGAATTTGTT+TGG - Chr4:77215147-77215166 None:intergenic 40.0%
! CCAAGACCTTTGAGAAACTA+AGG - Chr4:77216484-77216503 None:intergenic 40.0%
! TAGCTTAGAATACGGACTAC+GGG - Chr4:77217288-77217307 None:intergenic 40.0%
! TCTTTTGTCCTCTTCATCAG+AGG + Chr4:77216849-77216868 MsG0480022827.01.T01:intron 40.0%
! TGATCTGCTTCAGTTTTCAG+AGG + Chr4:77215938-77215957 MsG0480022827.01.T01:CDS 40.0%
! TGTTGATCTAGACACGCTTT+TGG - Chr4:77217697-77217716 None:intergenic 40.0%
!! AACATCAAGGACTAGTCCTA+AGG - Chr4:77215466-77215485 None:intergenic 40.0%
!! GGTTCTGGAAAAACATTTCC+TGG + Chr4:77216335-77216354 MsG0480022827.01.T01:CDS 40.0%
!!! TTGAGTCTTTTTGGCTCACT+AGG + Chr4:77214989-77215008 MsG0480022827.01.T01:intron 40.0%
AAACAGCTTGGAGGAAAGCT+GGG + Chr4:77215876-77215895 MsG0480022827.01.T01:CDS 45.0%
AAGCACCAGGCATACGTTAA+TGG - Chr4:77215505-77215524 None:intergenic 45.0%
AATAAGGCAAGCAGCATCCT+TGG + Chr4:77215401-77215420 MsG0480022827.01.T01:intron 45.0%
AATCAGCGGAGAAGAAGTTG+AGG + Chr4:77216289-77216308 MsG0480022827.01.T01:CDS 45.0%
ACTTGATTGCAGTGGAACAG+AGG + Chr4:77213484-77213503 MsG0480022827.01.T01:intron 45.0%
AGAGGCAGATGAAGATCATG+CGG - Chr4:77214574-77214593 None:intergenic 45.0%
AGCCTGCCTGCAAATTCAAT+TGG + Chr4:77213734-77213753 MsG0480022827.01.T01:CDS 45.0%
AGCTATGAAGCTCGCAAATC+TGG + Chr4:77213585-77213604 MsG0480022827.01.T01:CDS 45.0%
ATACAGGAATGCAGGTTCAG+AGG + Chr4:77213797-77213816 MsG0480022827.01.T01:CDS 45.0%
ATCAGCGGAGAAGAAGTTGA+GGG + Chr4:77216290-77216309 MsG0480022827.01.T01:CDS 45.0%
CAGTACAACTCCTACAAAGG+GGG + Chr4:77213546-77213565 MsG0480022827.01.T01:CDS 45.0%
CGCCGGTATTGCTCATAATA+AGG + Chr4:77215385-77215404 MsG0480022827.01.T01:intron 45.0%
CTAAAACCTGAAGGTGACGA+GGG - Chr4:77217512-77217531 None:intergenic 45.0%
CTTCTACGTTCAAGGTTCCT+AGG + Chr4:77213391-77213410 MsG0480022827.01.T01:intron 45.0%
GAATGTCCTGAAGAAGACAC+AGG + Chr4:77217661-77217680 MsG0480022827.01.T01:CDS 45.0%
GAGCCAAAAAGACTCAAAGG+TGG - Chr4:77214986-77215005 None:intergenic 45.0%
GCATGCTAGAGCATATAAGG+TGG + Chr4:77216752-77216771 MsG0480022827.01.T01:intron 45.0%
GCGATTGTCTTCAAAGCTTG+AGG - Chr4:77216362-77216381 None:intergenic 45.0%
GGGCTTCAAATTAAGGTCAG+AGG + Chr4:77214072-77214091 MsG0480022827.01.T01:intron 45.0%
GGTTGAACTTGTGAACCATG+AGG - Chr4:77214250-77214269 None:intergenic 45.0%
GTGCCACATTCATCTGTTGA+AGG + Chr4:77215583-77215602 MsG0480022827.01.T01:CDS 45.0%
GTTTCCATTCTTTCGCGCAA+GGG + Chr4:77213919-77213938 MsG0480022827.01.T01:CDS 45.0%
TATGCATGCATGTGCGTTCA+TGG + Chr4:77216158-77216177 MsG0480022827.01.T01:intron 45.0%
TCAACATGTTCCACGCTTTC+AGG - Chr4:77214024-77214043 None:intergenic 45.0%
TCCGTTGCATACAACATTGC+TGG + Chr4:77214843-77214862 MsG0480022827.01.T01:intron 45.0%
TGGGACTACAAAGATCCAAG+AGG + Chr4:77216968-77216987 MsG0480022827.01.T01:CDS 45.0%
TGTTGTATGCAACGGAGTGT+TGG - Chr4:77214839-77214858 None:intergenic 45.0%
TGTTTCCATTCTTTCGCGCA+AGG + Chr4:77213918-77213937 MsG0480022827.01.T01:CDS 45.0%
TTCACTCCTGTGTCTTCTTC+AGG - Chr4:77217670-77217689 None:intergenic 45.0%
TTGAGGCTATATGCTGAAGC+AGG + Chr4:77217595-77217614 MsG0480022827.01.T01:intron 45.0%
TTGTCTGCATAGCGATCTGT+AGG + Chr4:77216203-77216222 MsG0480022827.01.T01:intron 45.0%
TTTCCAGAACCATGGCTCTT+GGG - Chr4:77216326-77216345 None:intergenic 45.0%
! ATAGAGTTAGGGCATCCTCT+TGG - Chr4:77216986-77217005 None:intergenic 45.0%
! CTCGCAAATCTGGTGTCAAA+CGG + Chr4:77213595-77213614 MsG0480022827.01.T01:CDS 45.0%
! GATCTAGACACGCTTTTGGA+TGG - Chr4:77217693-77217712 None:intergenic 45.0%
! GTTGTATGCAACGGAGTGTT+GGG - Chr4:77214838-77214857 None:intergenic 45.0%
! TCTAAAACCTGAAGGTGACG+AGG - Chr4:77217513-77217532 None:intergenic 45.0%
! TGAAAGCGTGGAACATGTTG+AGG + Chr4:77214023-77214042 MsG0480022827.01.T01:CDS 45.0%
! TTGGCTTTCAGGAAACAGCT+TGG + Chr4:77215864-77215883 MsG0480022827.01.T01:intron 45.0%
! TTTTCCAGAACCATGGCTCT+TGG - Chr4:77216327-77216346 None:intergenic 45.0%
!! CAGCATCTGAAAAAAGCACC+AGG - Chr4:77215518-77215537 None:intergenic 45.0%
!! GCTTAGTTGGTTTGAGCATG+TGG - Chr4:77214662-77214681 None:intergenic 45.0%
!! TCAAGGACTAGTCCTAAGGA+AGG - Chr4:77215462-77215481 None:intergenic 45.0%
!!! AGTCTTTTTGGCTCACTAGG+TGG + Chr4:77214992-77215011 MsG0480022827.01.T01:intron 45.0%
!!! CTGGTGCTTTTTTCAGATGC+TGG + Chr4:77215516-77215535 MsG0480022827.01.T01:intron 45.0%
!!! GTCTTTTTGGCTCACTAGGT+GGG + Chr4:77214993-77215012 MsG0480022827.01.T01:intron 45.0%
!!! TCTTTTTGGCTCACTAGGTG+GGG + Chr4:77214994-77215013 MsG0480022827.01.T01:intron 45.0%
!! TACATTAATTAAATTAAATT+GGG - Chr4:77213459-77213478 None:intergenic 5.0%
!! TTACATTAATTAAATTAAAT+TGG - Chr4:77213460-77213479 None:intergenic 5.0%
AACAGCTTGGAGGAAAGCTG+GGG + Chr4:77215877-77215896 MsG0480022827.01.T01:CDS 50.0%
AATCAAGCCACCCCCTTTGT+AGG - Chr4:77213559-77213578 None:intergenic 50.0%
AATGCGTGGCGATGAAGCAA+AGG + Chr4:77213710-77213729 MsG0480022827.01.T01:CDS 50.0%
ACATGTTCCACGCTTTCAGG+AGG - Chr4:77214021-77214040 None:intergenic 50.0%
AGAGTAGATCATGCGGAGGA+GGG - Chr4:77214610-77214629 None:intergenic 50.0%
AGATGAAGATCATGCGGAGG+AGG - Chr4:77214568-77214587 None:intergenic 50.0%
AGCATTGCAGTACTTGGCTG+TGG + Chr4:77216252-77216271 MsG0480022827.01.T01:intron 50.0%
AGTGGCCATTAACGTATGCC+TGG + Chr4:77215497-77215516 MsG0480022827.01.T01:intron 50.0%
ATGGAGAGTAGATCATGCGG+AGG - Chr4:77214614-77214633 None:intergenic 50.0%
CCTGAGTTCGGCAACAATGA+AGG - Chr4:77215330-77215349 None:intergenic 50.0%
CCTTCATTGTTGCCGAACTC+AGG + Chr4:77215327-77215346 MsG0480022827.01.T01:intron 50.0%
CGTCAGTTTACCAGCCAAAC+TGG + Chr4:77215040-77215059 MsG0480022827.01.T01:intron 50.0%
GAAACAGCTTGGAGGAAAGC+TGG + Chr4:77215875-77215894 MsG0480022827.01.T01:CDS 50.0%
GAGGGTAGTCAAATGGCTAG+AGG - Chr4:77214549-77214568 None:intergenic 50.0%
GATCCTATGTCAAGAGCCAG+AGG - Chr4:77217177-77217196 None:intergenic 50.0%
GATCTTGGCATCAACACCGT+TGG + Chr4:77215915-77215934 MsG0480022827.01.T01:CDS 50.0%
GATGAAGATCATGCGGAGGA+GGG - Chr4:77214567-77214586 None:intergenic 50.0%
GCGAGAAGAGAGAGTTGTGA+TGG + Chr4:77213338-77213357 MsG0480022827.01.T01:CDS 50.0%
GCTTTCAGGAAACAGCTTGG+AGG + Chr4:77215867-77215886 MsG0480022827.01.T01:intron 50.0%
GTAGGCAAGCCCCTTAAACT+TGG - Chr4:77213516-77213535 None:intergenic 50.0%
TACAACTCCTACAAAGGGGG+TGG + Chr4:77213549-77213568 MsG0480022827.01.T01:CDS 50.0%
TCAGCGGAGAAGAAGTTGAG+GGG + Chr4:77216291-77216310 MsG0480022827.01.T01:CDS 50.0%
TGAACGCCTTGACTCTGACA+TGG + Chr4:77216695-77216714 MsG0480022827.01.T01:CDS 50.0%
TGGCTGTGGAATATTGCGAG+AGG + Chr4:77216266-77216285 MsG0480022827.01.T01:CDS 50.0%
TGGTGGAAACTCGGCTTAGT+TGG - Chr4:77214675-77214694 None:intergenic 50.0%
! AGAGAGAGAGAGAGGTATGC+GGG + Chr4:77213313-77213332 MsG0480022827.01.T01:exon 50.0%
! GAGAGAGAGAGAGAGGTATG+CGG + Chr4:77213312-77213331 MsG0480022827.01.T01:exon 50.0%
! TAGCTTTACCGCGTGCTACA+GGG - Chr4:77213767-77213786 None:intergenic 50.0%
! TGTGGTTCAGGTTCATCCTC+TGG + Chr4:77217158-77217177 MsG0480022827.01.T01:intron 50.0%
!! CATCCTCTGGCTCTTGACAT+AGG + Chr4:77217171-77217190 MsG0480022827.01.T01:intron 50.0%
!! GATGTTGCTGCTTTCAGCAG+CGG + Chr4:77216434-77216453 MsG0480022827.01.T01:intron 50.0%
!! GGCACAACTGTTTGTTGTGC+AGG - Chr4:77215568-77215587 None:intergenic 50.0%
!! TTAGCTTTACCGCGTGCTAC+AGG - Chr4:77213768-77213787 None:intergenic 50.0%
!! TTGTTTGAGCAGCATCGGTG+AGG - Chr4:77213984-77214003 None:intergenic 50.0%
ACAGAATTCACGTGCTCCGC+CGG + Chr4:77215368-77215387 MsG0480022827.01.T01:intron 55.0%
CGACTACTTCCCAAGAGCCA+TGG + Chr4:77216314-77216333 MsG0480022827.01.T01:CDS 55.0%
CGAGAGAGAGAGAGAGAGAG+AGG + Chr4:77213305-77213324 MsG0480022827.01.T01:five_prime_UTR 55.0%
CTTCCCAAGAGCCATGGTTC+TGG + Chr4:77216320-77216339 MsG0480022827.01.T01:CDS 55.0%
GAGAGTAGATCATGCGGAGG+AGG - Chr4:77214611-77214630 None:intergenic 55.0%
GGAAACTCCTCCTGAAAGCG+TGG + Chr4:77214011-77214030 MsG0480022827.01.T01:CDS 55.0%
GGCAGATGAAGATCATGCGG+AGG - Chr4:77214571-77214590 None:intergenic 55.0%
GTCTTCAAAGCTTGAGGCCC+AGG - Chr4:77216356-77216375 None:intergenic 55.0%
GTTCAAGTCCCTGTAGCACG+CGG + Chr4:77213756-77213775 MsG0480022827.01.T01:CDS 55.0%
TCGACCCTTGCGCGAAAGAA+TGG - Chr4:77213926-77213945 None:intergenic 55.0%
TGCGGAGGAGGGTAGTCAAA+TGG - Chr4:77214556-77214575 None:intergenic 55.0%
! GAGACATGGGCTGACCAGTT+TGG - Chr4:77215057-77215076 None:intergenic 55.0%
! GGGGTATGACGAGAGCATGT+AGG + Chr4:77215159-77215178 MsG0480022827.01.T01:intron 55.0%
GTTGCACCCTCGTCACCTTC+AGG + Chr4:77217503-77217522 MsG0480022827.01.T01:intron 60.0%
! CATGGGCTGACCAGTTTGGC+TGG - Chr4:77215053-77215072 None:intergenic 60.0%
! GAGAGAGAGAGGTATGCGGG+TGG + Chr4:77213316-77213335 MsG0480022827.01.T01:exon 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 77213243 77217873 77213243 ID=MsG0480022827.01;Name=MsG0480022827.01
Chr4 mRNA 77213243 77217873 77213243 ID=MsG0480022827.01.T01;Parent=MsG0480022827.01;Name=MsG0480022827.01.T01;_AED=0.44;_eAED=0.45;_QI=86|0.7|0.81|1|1|1|11|0|426
Chr4 exon 77213243 77213404 77213243 ID=MsG0480022827.01.T01:exon:4763;Parent=MsG0480022827.01.T01
Chr4 exon 77213496 77213616 77213496 ID=MsG0480022827.01.T01:exon:4764;Parent=MsG0480022827.01.T01
Chr4 exon 77213707 77213818 77213707 ID=MsG0480022827.01.T01:exon:4765;Parent=MsG0480022827.01.T01
Chr4 exon 77213916 77214086 77213916 ID=MsG0480022827.01.T01:exon:4766;Parent=MsG0480022827.01.T01
Chr4 exon 77215532 77215635 77215532 ID=MsG0480022827.01.T01:exon:4767;Parent=MsG0480022827.01.T01
Chr4 exon 77215875 77215994 77215875 ID=MsG0480022827.01.T01:exon:4768;Parent=MsG0480022827.01.T01
Chr4 exon 77216262 77216385 77216262 ID=MsG0480022827.01.T01:exon:4769;Parent=MsG0480022827.01.T01
Chr4 exon 77216657 77216770 77216657 ID=MsG0480022827.01.T01:exon:4770;Parent=MsG0480022827.01.T01
Chr4 exon 77216912 77217101 77216912 ID=MsG0480022827.01.T01:exon:4771;Parent=MsG0480022827.01.T01
Chr4 exon 77217617 77217717 77217617 ID=MsG0480022827.01.T01:exon:4772;Parent=MsG0480022827.01.T01
Chr4 exon 77217826 77217873 77217826 ID=MsG0480022827.01.T01:exon:4773;Parent=MsG0480022827.01.T01
Chr4 five_prime_UTR 77213243 77213328 77213243 ID=MsG0480022827.01.T01:five_prime_utr;Parent=MsG0480022827.01.T01
Chr4 CDS 77213329 77213404 77213329 ID=MsG0480022827.01.T01:cds;Parent=MsG0480022827.01.T01
Chr4 CDS 77213496 77213616 77213496 ID=MsG0480022827.01.T01:cds;Parent=MsG0480022827.01.T01
Chr4 CDS 77213707 77213818 77213707 ID=MsG0480022827.01.T01:cds;Parent=MsG0480022827.01.T01
Chr4 CDS 77213916 77214086 77213916 ID=MsG0480022827.01.T01:cds;Parent=MsG0480022827.01.T01
Chr4 CDS 77215532 77215635 77215532 ID=MsG0480022827.01.T01:cds;Parent=MsG0480022827.01.T01
Chr4 CDS 77215875 77215994 77215875 ID=MsG0480022827.01.T01:cds;Parent=MsG0480022827.01.T01
Chr4 CDS 77216262 77216385 77216262 ID=MsG0480022827.01.T01:cds;Parent=MsG0480022827.01.T01
Chr4 CDS 77216657 77216770 77216657 ID=MsG0480022827.01.T01:cds;Parent=MsG0480022827.01.T01
Chr4 CDS 77216912 77217101 77216912 ID=MsG0480022827.01.T01:cds;Parent=MsG0480022827.01.T01
Chr4 CDS 77217617 77217717 77217617 ID=MsG0480022827.01.T01:cds;Parent=MsG0480022827.01.T01
Chr4 CDS 77217826 77217873 77217826 ID=MsG0480022827.01.T01:cds;Parent=MsG0480022827.01.T01
Gene Sequence

>MsG0480022827.01.T01

ATGCGGGTGGCGAGAAGAGAGAGTTGTGATGGAAGAGTCATTGCTCACGTTGATATGGATTGCTTCTACGTTCAAGTGGAACAGAGGAAGCAACCAAGTTTAAGGGGCTTGCCTACTGCAGTTGTTCAGTACAACTCCTACAAAGGGGGTGGCTTGATTGCTGTTAGCTATGAAGCTCGCAAATCTGGTGTCAAACGTTCAATGCGTGGCGATGAAGCAAAGGAAGCCTGCCTGCAAATTCAATTGGTTCAAGTCCCTGTAGCACGCGGTAAAGCTAACCTCAATACATACAGGAATGCAGGTTCAGAGGTTGTTTCCATTCTTTCGCGCAAGGGTCGATGTGAGAGAGCTTCAATTGATGAGGTGTATCTTGACCTCACCGATGCTGCTCAAACAATGTTAATGGAAACTCCTCCTGAAAGCGTGGAACATGTTGAGGAAGAAGTTCTCAAGTCACATGTTTTGGGGCTTCAAATTAAGATGCTGGCTAAACTTGCTAGTGCTATGAACAAACCTGCACAACAAACAGTTGTGCCACATTCATCTGTTGAAGGGTTGCTCGAGTCTTTTCCGATAAAGAAAATGAAACAGCTTGGAGGAAAGCTGGGGACTTCCTTACAAAGTGATCTTGGCATCAACACCGTTGGTGATCTGCTTCAGTTTTCAGAGGAGAAGCTACAACAACGTTATGGGATCAATACTGGTACTTGGCTGTGGAATATTGCGAGAGGAATCAGCGGAGAAGAAGTTGAGGGGCGACTACTTCCCAAGAGCCATGGTTCTGGAAAAACATTTCCTGGGCCTCAAGCTTTGAAGACAATCGCTTCTGTTCAACATTGGCTTAATGAACTGGGCGAAGAGCTGAGTGAACGCCTTGACTCTGACATGGATCAAAACAAACGGATTGCGCACACGTTGACTCTGCATGCTAGAGCATATAAGAAAGGGGATTCAGATTCACATAAAAAGTTCCCTTCTAAATCTTGTCCTTTAAGATATGGGACTACAAAGATCCAAGAGGATGCCCTAACTCTATTTCAATCTGGATTACGTGATTTTTTGGGCTTGTACAACTCTAAGACTAACGGCAGTGAAAATAAATGGGGAATAACTGCACTTTCTGTTTCTGCGAGTAGTGAAAATTGTTTGGAAGTGATTCCTAATGAATTACAACTCGAATGTCCTGAAGAAGACACAGGAGTGAACCATCCAAAAGCGTGTCTAGATCAACAGATGACCGCAAGGTGGATAGATTTTTTGATAGGTTTTAATGGCCAATAG

Protein sequence

>MsG0480022827.01.T01

MRVARRESCDGRVIAHVDMDCFYVQVEQRKQPSLRGLPTAVVQYNSYKGGGLIAVSYEARKSGVKRSMRGDEAKEACLQIQLVQVPVARGKANLNTYRNAGSEVVSILSRKGRCERASIDEVYLDLTDAAQTMLMETPPESVEHVEEEVLKSHVLGLQIKMLAKLASAMNKPAQQTVVPHSSVEGLLESFPIKKMKQLGGKLGTSLQSDLGINTVGDLLQFSEEKLQQRYGINTGTWLWNIARGISGEEVEGRLLPKSHGSGKTFPGPQALKTIASVQHWLNELGEELSERLDSDMDQNKRIAHTLTLHARAYKKGDSDSHKKFPSKSCPLRYGTTKIQEDALTLFQSGLRDFLGLYNSKTNGSENKWGITALSVSASSENCLEVIPNELQLECPEEDTGVNHPKACLDQQMTARWIDFLIGFNGQ*