AlfalfaGEDB | MsG0180003503.01

M. sativa cultivar ZhongmuNo.1 / MsG0180003503.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003503.01.T01	XP_013468144.1	93.305	239	11	4	1	237	1	236	8.16E-157	444

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003503.01.T01	A0A072VKM4	93.305	239	11	4	1	237	1	236	3.90e-157	444

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048273.01	MsG0180003503.01	0.810472	1.133399e-50	6.838183e-48
MsG0080048274.01	MsG0180003503.01	0.831138	1.977959e-55	2.127368e-52
MsG0080048528.01	MsG0180003503.01	0.817799	2.733401e-52	2.010492e-49
MsG0080048887.01	MsG0180003503.01	0.864435	1.218215e-64	3.824780e-61
MsG0080048896.01	MsG0180003503.01	0.841252	5.318002e-58	7.768259e-55
MsG0080048900.01	MsG0180003503.01	0.877418	6.384008e-69	3.207942e-65
MsG0080048909.01	MsG0180003503.01	0.831138	1.978294e-55	2.127718e-52
MsG0080048969.01	MsG0180003503.01	0.862608	4.491646e-64	1.323146e-60
MsG0080048987.01	MsG0180003503.01	0.828753	7.545295e-55	7.567954e-52
MsG0080048992.01	MsG0180003503.01	0.836598	8.521314e-57	1.078974e-53

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003503.01.T01	MTR_1g063100	93.305	239	11	4	1	237	1	236	9.88e-161	444
MsG0180003503.01.T01	MTR_1g063100	91.979	187	10	4	1	185	1	184	3.60e-119	337
MsG0180003503.01.T01	MTR_1g063100	92.391	184	9	4	1	182	1	181	1.29e-117	334
MsG0180003503.01.T01	MTR_1g063100	92.391	184	9	4	1	182	1	181	2.35e-117	335
MsG0180003503.01.T01	MTR_1g063100	96.774	155	5	0	83	237	39	193	7.40e-111	317
MsG0180003503.01.T01	MTR_1g063100	97.000	100	3	0	83	182	39	138	7.82e-68	208
MsG0180003503.01.T01	MTR_6g035275	94.643	56	3	0	129	184	1	56	2.57e-34	117

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003503.01.T01	AT2G36895	62.656	241	76	3	1	237	1	231	1.71e-106	307
MsG0180003503.01.T01	AT2G36895	62.397	242	76	4	1	237	1	232	1.09e-104	302
MsG0180003503.01.T01	AT2G36895	56.134	269	76	5	1	237	1	259	1.38e-98	288

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Find 67 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTACATGGATCCCAATCA+AGG	0.527063	1:-63305939	MsG0180003503.01.T01:CDS
AAGAGAATCTGAATCTGAAT+AGG	0.338244	1:+63307448	None:intergenic
ACAGGTGATTGCCGCAGAGA+AGG	0.564927	1:-63303988	MsG0180003503.01.T01:intron
ACCTAGACAAAGGCCTTGAT+TGG	0.415493	1:+63305926	None:intergenic
ACCTCTGCTTGCCTTCTCTG+CGG	0.691246	1:+63303977	None:intergenic
ACGAAGAAGACGAGGATGAG+AGG	0.584511	1:+63307344	None:intergenic
ACTGACGGACTCATCCAAAT+CGG	0.540041	1:-63306642	MsG0180003503.01.T01:CDS
ACTTCTCACAGAAATTCAAT+GGG	0.519019	1:-63306694	MsG0180003503.01.T01:intron
AGAAATTCAATGGGTTTCTC+AGG	0.422443	1:-63306685	MsG0180003503.01.T01:CDS
AGACGAGGATGAGAGGTAGA+AGG	0.468888	1:+63307351	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAATCTCTGACATTGAAA+TGG	+	Chr1:63305257-63305276	None:intergenic	30.0%
AAGAGAATCTGAATCTGAAT+AGG	+	Chr1:63303856-63303875	None:intergenic	30.0%
AATTGAATACAAAAGGAGCT+TGG	+	Chr1:63304906-63304925	None:intergenic	30.0%
ACTTCTCACAGAAATTCAAT+GGG	-	Chr1:63304607-63304626	MsG0180003503.01.T01:intron	30.0%
AGAACATCAATTACCATATG+TGG	+	Chr1:63305840-63305859	None:intergenic	30.0%
AGAGAATCTGAATCTGAATA+GGG	+	Chr1:63303855-63303874	None:intergenic	30.0%
AGATGTAAGTTTAACATGCT+AGG	+	Chr1:63306869-63306888	None:intergenic	30.0%
AGGTTATGATAAATTGGATG+AGG	+	Chr1:63306048-63306067	None:intergenic	30.0%
AGTCTTTCATGTAGAACAAT+TGG	-	Chr1:63305126-63305145	MsG0180003503.01.T01:intron	30.0%
ATTAAACAAACTCTGATCCT+TGG	-	Chr1:63305978-63305997	MsG0180003503.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	63303836	63307487	63303836	ID=MsG0180003503.01;Name=MsG0180003503.01
Chr1	mRNA	63303836	63307487	63303836	ID=MsG0180003503.01.T01;Parent=MsG0180003503.01;Name=MsG0180003503.01.T01;_AED=0.45;_eAED=0.45;_QI=0\|0\|0\|1\|0.75\|0.8\|5\|0\|237
Chr1	exon	63307262	63307487	63307262	ID=MsG0180003503.01.T01:exon:4670;Parent=MsG0180003503.01.T01
Chr1	exon	63306605	63306705	63306605	ID=MsG0180003503.01.T01:exon:4669;Parent=MsG0180003503.01.T01
Chr1	exon	63305899	63306012	63305899	ID=MsG0180003503.01.T01:exon:4668;Parent=MsG0180003503.01.T01
Chr1	exon	63305717	63305818	63305717	ID=MsG0180003503.01.T01:exon:4667;Parent=MsG0180003503.01.T01
Chr1	exon	63303836	63304006	63303836	ID=MsG0180003503.01.T01:exon:4666;Parent=MsG0180003503.01.T01
Chr1	CDS	63307262	63307487	63307262	ID=MsG0180003503.01.T01:cds;Parent=MsG0180003503.01.T01
Chr1	CDS	63306605	63306705	63306605	ID=MsG0180003503.01.T01:cds;Parent=MsG0180003503.01.T01
Chr1	CDS	63305899	63306012	63305899	ID=MsG0180003503.01.T01:cds;Parent=MsG0180003503.01.T01
Chr1	CDS	63305717	63305818	63305717	ID=MsG0180003503.01.T01:cds;Parent=MsG0180003503.01.T01
Chr1	CDS	63303836	63304006	63303836	ID=MsG0180003503.01.T01:cds;Parent=MsG0180003503.01.T01

Gene Sequence

>MsG0180003503.01.T01

ATGGCTGAAACTTCAACCCTATTCAGATTCAGATTCTCTTCTCCACCATTCAATTCCATCATTCATCGTTCTTCCAAATCTTTCTCATTCAACAACAACTCTTTCCCTGTTGCTCCTTCTACCTCTCATCCTCGTCTTCTTCGTTTCTCCCCCAAAGCAACTCATTCATCCTCCAACAACAACAACGATTCCTTCGAATTCTTCCCTTGGTCGGACGATGATAACGAAATTCAATGGGTTTCTCAGGACAAATTTACCTTCTTCACCACTGACGGACTCATCCAAATCGGAGGCAACATGGTTCCTCGTCGCGTCAAGTCTTCTGATAAGCAAGGGAAATCCCAAACTGCTAAAAAATATCAGCGGTATCAAGAGAGCAACTACATGGATCCCAATCAAGGCCTTTGTCTAGGTGCACTCTTTGATATTGCAGCTACAAATGGACTTGATATGGGCAGAAGACTCTGCATTTTTGGTTTCTGCCGCTCGATTGAGATGCTTAGTGATGTGGTGCAAGATACTGTCTTGGAGCATGGTGGGGAGGTGATTGCCGCAGAGAAGGCAAGCAGAGGTGATTTGCATGAAAAGCTAACCATGACTGTTGCAGTACCATTACTATGGGGCGTTCCTCCAGCTTCTGAGACACTTCGCCTAGCTGTTAAAAGTGGAGGAGGAATTGTAGAGAAGGTCTATTGGCAATTCGACTTTCTGTAG

Protein sequence

>MsG0180003503.01.T01

MAETSTLFRFRFSSPPFNSIIHRSSKSFSFNNNSFPVAPSTSHPRLLRFSPKATHSSSNNNNDSFEFFPWSDDDNEIQWVSQDKFTFFTTDGLIQIGGNMVPRRVKSSDKQGKSQTAKKYQRYQESNYMDPNQGLCLGALFDIAATNGLDMGRRLCIFGFCRSIEMLSDVVQDTVLEHGGEVIAAEKASRGDLHEKLTMTVAVPLLWGVPPASETLRLAVKSGGGIVEKVYWQFDFL*