AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003503.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003503.01.T01 MTR_1g063100 93.305 239 11 4 1 237 1 236 9.88e-161 444
MsG0180003503.01.T01 MTR_1g063100 91.979 187 10 4 1 185 1 184 3.60e-119 337
MsG0180003503.01.T01 MTR_1g063100 92.391 184 9 4 1 182 1 181 1.29e-117 334
MsG0180003503.01.T01 MTR_1g063100 92.391 184 9 4 1 182 1 181 2.35e-117 335
MsG0180003503.01.T01 MTR_1g063100 96.774 155 5 0 83 237 39 193 7.40e-111 317
MsG0180003503.01.T01 MTR_1g063100 97.000 100 3 0 83 182 39 138 7.82e-68 208
MsG0180003503.01.T01 MTR_6g035275 94.643 56 3 0 129 184 1 56 2.57e-34 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003503.01.T01 AT2G36895 62.656 241 76 3 1 237 1 231 1.71e-106 307
MsG0180003503.01.T01 AT2G36895 62.397 242 76 4 1 237 1 232 1.09e-104 302
MsG0180003503.01.T01 AT2G36895 56.134 269 76 5 1 237 1 259 1.38e-98 288

Find 67 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTCCAGGGACTTGATA+TGG 0.214254 1:-63305806 MsG0180003503.01.T01:intron
GGAGGATGAATGAGTTGCTT+TGG 0.300368 1:+63307314 None:intergenic
GAGGATGAATGAGTTGCTTT+GGG 0.320392 1:+63307315 None:intergenic
CTGTTGCAGTACCATTACTA+TGG 0.322047 1:-63303929 MsG0180003503.01.T01:CDS
AAGAGAATCTGAATCTGAAT+AGG 0.338244 1:+63307448 None:intergenic
GAACCATGTTGCCTCCGATT+TGG 0.352718 1:+63306628 None:intergenic
TGAGAGGTAGAAGGAGCAAC+AGG 0.364803 1:+63307360 None:intergenic
GACTTCTCACAGAAATTCAA+TGG 0.398474 1:-63306695 MsG0180003503.01.T01:intron
TCTTTCCAGGGACTTGATAT+GGG 0.411462 1:-63305805 MsG0180003503.01.T01:intron
ACCTAGACAAAGGCCTTGAT+TGG 0.415493 1:+63305926 None:intergenic
GTTGTTGAATGAGAAAGATT+TGG 0.415537 1:+63307392 None:intergenic
AGAAATTCAATGGGTTTCTC+AGG 0.422443 1:-63306685 MsG0180003503.01.T01:CDS
GAAGGAATCGTTGTTGTTGT+TGG 0.444342 1:+63307293 None:intergenic
CCTTGGTCGGACGATGATAA+CGG 0.450041 1:-63307261 MsG0180003503.01.T01:intron
AGAGAATCTGAATCTGAATA+GGG 0.461673 1:+63307449 None:intergenic
AGACGAGGATGAGAGGTAGA+AGG 0.468888 1:+63307351 None:intergenic
TGGAGGAGGAATTGTAGAGA+AGG 0.473722 1:-63303862 MsG0180003503.01.T01:CDS
CTTCGAATTCTTCCCTTGGT+CGG 0.474734 1:-63307274 MsG0180003503.01.T01:CDS
AGGCGAAGTGTCTCAGAAGC+TGG 0.476255 1:+63303897 None:intergenic
ATTCCTTCGAATTCTTCCCT+TGG 0.488876 1:-63307278 MsG0180003503.01.T01:CDS
GAATTGTAGAGAAGGTCTAT+TGG 0.491347 1:-63303854 MsG0180003503.01.T01:CDS
TTTGGAAGAACGATGAATGA+TGG 0.491956 1:+63307410 None:intergenic
GAGTCCGTCAGTGGTGAAGA+AGG 0.516790 1:+63306653 None:intergenic
TTTACCTTCTTCACCACTGA+CGG 0.518009 1:-63306657 MsG0180003503.01.T01:CDS
ACTTCTCACAGAAATTCAAT+GGG 0.519019 1:-63306694 MsG0180003503.01.T01:intron
CCTAGACAAAGGCCTTGATT+GGG 0.524442 1:+63305927 None:intergenic
AACTACATGGATCCCAATCA+AGG 0.527063 1:-63305939 MsG0180003503.01.T01:CDS
TGTTGCAGTACCATTACTAT+GGG 0.529593 1:-63303928 MsG0180003503.01.T01:CDS
ATACTGTCTTGGAGCATGGT+GGG 0.536785 1:-63305720 MsG0180003503.01.T01:CDS
ACTGACGGACTCATCCAAAT+CGG 0.540041 1:-63306642 MsG0180003503.01.T01:CDS
GGAATCGTTGTTGTTGTTGG+AGG 0.553086 1:+63307296 None:intergenic
CGCCTAGCTGTTAAAAGTGG+AGG 0.555989 1:-63303879 MsG0180003503.01.T01:CDS
CCGTTATCATCGTCCGACCA+AGG 0.556516 1:+63307261 None:intergenic
CCCAATCAAGGCCTTTGTCT+AGG 0.561143 1:-63305927 MsG0180003503.01.T01:CDS
ACAGGTGATTGCCGCAGAGA+AGG 0.564927 1:-63303988 MsG0180003503.01.T01:intron
CGTTATCATCGTCCGACCAA+GGG 0.566245 1:+63307262 None:intergenic
CGATGAATGATGGAATTGAA+TGG 0.567336 1:+63307420 None:intergenic
CTCATGTTTCACAGAAGCAA+GGG 0.567711 1:-63306004 MsG0180003503.01.T01:intron
GTATCAAGAGAGCAACTACA+TGG 0.569947 1:-63305952 MsG0180003503.01.T01:CDS
CTAGCTGTTAAAAGTGGAGG+AGG 0.572051 1:-63303876 MsG0180003503.01.T01:CDS
CTTCGCCTAGCTGTTAAAAG+TGG 0.572780 1:-63303882 MsG0180003503.01.T01:CDS
TACTGTCTTGGAGCATGGTG+GGG 0.575565 1:-63305719 MsG0180003503.01.T01:CDS
ACGAAGAAGACGAGGATGAG+AGG 0.584511 1:+63307344 None:intergenic
TCTCATGTTTCACAGAAGCA+AGG 0.584656 1:-63306005 MsG0180003503.01.T01:intron
CAAGATACTGTCTTGGAGCA+TGG 0.591033 1:-63305724 MsG0180003503.01.T01:CDS
GGATGAATGAGTTGCTTTGG+GGG 0.591611 1:+63307317 None:intergenic
CATCCAAATCGGAGGCAACA+TGG 0.591946 1:-63306631 MsG0180003503.01.T01:CDS
TCAGAAGACTTGACGCGACG+AGG 0.594267 1:+63306606 None:intergenic
GGAGGAACGCCCCATAGTAA+TGG 0.596217 1:+63303918 None:intergenic
TAATGGTACTGCAACAGTCA+TGG 0.597221 1:+63303935 None:intergenic
GCCGCAGAGAAGGCAAGCAG+AGG 0.602339 1:-63303978 MsG0180003503.01.T01:CDS
TGTCTTGGAGCATGGTGGGG+AGG 0.619288 1:-63305716 MsG0180003503.01.T01:intron
GATACTGTCTTGGAGCATGG+TGG 0.619582 1:-63305721 MsG0180003503.01.T01:CDS
AGGATGAATGAGTTGCTTTG+GGG 0.628164 1:+63307316 None:intergenic
CAAAGAGTGCACCTAGACAA+AGG 0.629542 1:+63305916 None:intergenic
TGAATGATGGAATTGAATGG+TGG 0.640438 1:+63307423 None:intergenic
CGACCAAGGGAAGAATTCGA+AGG 0.640632 1:+63307275 None:intergenic
GATTGAGATGCTTAGTGATG+TGG 0.643100 1:-63305749 MsG0180003503.01.T01:CDS
CACTAAGCATCTCAATCGAG+CGG 0.647776 1:+63305755 None:intergenic
GATTTGGATGAGTCCGTCAG+TGG 0.649064 1:+63306644 None:intergenic
TGTGGTGCAAGATACTGTCT+TGG 0.665794 1:-63305731 MsG0180003503.01.T01:CDS
GACGGACTCATCCAAATCGG+AGG 0.668241 1:-63306639 MsG0180003503.01.T01:CDS
GAGAGGTAGAAGGAGCAACA+GGG 0.668927 1:+63307361 None:intergenic
GGGGAGAAACGAAGAAGACG+AGG 0.670848 1:+63307336 None:intergenic
CGAAGTGTCTCAGAAGCTGG+AGG 0.672033 1:+63303900 None:intergenic
ACCTCTGCTTGCCTTCTCTG+CGG 0.691246 1:+63303977 None:intergenic
GTTGCAGTACCATTACTATG+GGG 0.768312 1:-63303927 MsG0180003503.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCTTTACTTAAAATAAAA+TGG - Chr1:63304818-63304837 MsG0180003503.01.T01:intron 10.0%
!!! TTATTTTAAGTAAAGATTTT+GGG + Chr1:63304816-63304835 None:intergenic 10.0%
!!! TTTATTTTAAGTAAAGATTT+TGG + Chr1:63304817-63304836 None:intergenic 10.0%
!! TGCCAAAAAAAAAAAAAATT+AGG + Chr1:63306546-63306565 None:intergenic 15.0%
!!! AAATGTAAATTTTTGTCTTA+TGG - Chr1:63306254-63306273 MsG0180003503.01.T01:intron 15.0%
!!! AATGTAAATTTTTGTCTTAT+GGG - Chr1:63306255-63306274 MsG0180003503.01.T01:intron 15.0%
!!! AGCCTAATTTTTTTTTTTTT+TGG - Chr1:63306541-63306560 MsG0180003503.01.T01:intron 15.0%
!!! ATGTTGAAATTTAACTTTAT+TGG - Chr1:63304954-63304973 MsG0180003503.01.T01:intron 15.0%
!!! GCTTTTTATAATTTAAAGAA+TGG - Chr1:63304424-63304443 MsG0180003503.01.T01:intron 15.0%
!!! TAAATTTCAACATATGTTTT+GGG + Chr1:63304947-63304966 None:intergenic 15.0%
!!! TTAAATTTCAACATATGTTT+TGG + Chr1:63304948-63304967 None:intergenic 15.0%
!! AAGATTAAGATAATTAGCTA+GGG + Chr1:63307042-63307061 None:intergenic 20.0%
!! ATAATTCAAATTCCTGTAAT+GGG + Chr1:63306962-63306981 None:intergenic 20.0%
!! ATAGAGTATAGCATAAAATT+TGG - Chr1:63306444-63306463 MsG0180003503.01.T01:intron 20.0%
!! TAAGATTAAGATAATTAGCT+AGG + Chr1:63307043-63307062 None:intergenic 20.0%
!! TTAAAAACTTAAGCTGTTAT+TGG - Chr1:63305030-63305049 MsG0180003503.01.T01:intron 20.0%
!! TTTCTTCAATTGAATACAAA+AGG + Chr1:63304913-63304932 None:intergenic 20.0%
!!! AAATTTAACTTTATTGGAAG+AGG - Chr1:63304960-63304979 MsG0180003503.01.T01:intron 20.0%
!!! AATGGATTTAAACAATAAGA+TGG + Chr1:63305239-63305258 None:intergenic 20.0%
!!! AATTTAACTTTATTGGAAGA+GGG - Chr1:63304961-63304980 MsG0180003503.01.T01:intron 20.0%
!!! CCATATAAAATTAGTTCTAA+TGG + Chr1:63307290-63307309 None:intergenic 20.0%
!!! CCATTAGAACTAATTTTATA+TGG - Chr1:63307287-63307306 MsG0180003503.01.T01:CDS 20.0%
!!! TACAAAATCACTAACATTTT+AGG - Chr1:63306137-63306156 MsG0180003503.01.T01:intron 20.0%
!!! TCAGATAAAATCATTTTAAC+TGG + Chr1:63304468-63304487 None:intergenic 20.0%
!!! TTCTTTTAACGATAAAACAA+TGG - Chr1:63305631-63305650 MsG0180003503.01.T01:intron 20.0%
!!! TTTAATGAAACCTGTATTTT+GGG - Chr1:63305755-63305774 MsG0180003503.01.T01:CDS 20.0%
!!! TTTTAATGAAACCTGTATTT+TGG - Chr1:63305754-63305773 MsG0180003503.01.T01:CDS 20.0%
! AAACATAATGAGATTGTGAA+AGG + Chr1:63306014-63306033 None:intergenic 25.0%
! AAACTGCTAAAAAATATCAG+CGG - Chr1:63305327-63305346 MsG0180003503.01.T01:intron 25.0%
! AAATGGGATAGTTTATTTAG+TGG + Chr1:63305713-63305732 None:intergenic 25.0%
! ACACGTTAAATTCAAAGATT+AGG - Chr1:63304116-63304135 MsG0180003503.01.T01:intron 25.0%
! ACTTATTAGCAGCTATTAAA+AGG - Chr1:63307139-63307158 MsG0180003503.01.T01:intron 25.0%
! AGCCTAAAATAATATGTTCT+AGG - Chr1:63306577-63306596 MsG0180003503.01.T01:intron 25.0%
! AGTTCAATTTCCAATTGTTT+AGG - Chr1:63306908-63306927 MsG0180003503.01.T01:intron 25.0%
! ATAACATGTTTGAAAAATCC+TGG - Chr1:63307095-63307114 MsG0180003503.01.T01:intron 25.0%
! CAAAATCAAGAAAAGAAATC+AGG + Chr1:63304090-63304109 None:intergenic 25.0%
! CACGTTAAATTCAAAGATTA+GGG - Chr1:63304117-63304136 MsG0180003503.01.T01:intron 25.0%
! CATAATTCAAATTCCTGTAA+TGG + Chr1:63306963-63306982 None:intergenic 25.0%
! GGATGTTTAATCAACAAAAT+AGG + Chr1:63305435-63305454 None:intergenic 25.0%
! GTCTATAGGTTATGATAAAT+TGG + Chr1:63306054-63306073 None:intergenic 25.0%
! TAAAGGTAAATCTAATGATC+TGG + Chr1:63306747-63306766 None:intergenic 25.0%
! TAATTCAAATTCCTGTAATG+GGG + Chr1:63306961-63306980 None:intergenic 25.0%
! TAGATTTACCTTTAGATCTT+TGG - Chr1:63306753-63306772 MsG0180003503.01.T01:intron 25.0%
! TCTTAATATTAACAAGTAGC+TGG - Chr1:63307058-63307077 MsG0180003503.01.T01:intron 25.0%
! TTAACAAGATCCTAAACAAT+TGG + Chr1:63306921-63306940 None:intergenic 25.0%
! TTTGTTGGAACAACAAATTA+AGG + Chr1:63306846-63306865 None:intergenic 25.0%
!! AATTATGTACTCGTTCTTTT+TGG - Chr1:63305068-63305087 MsG0180003503.01.T01:intron 25.0%
!! AGATTTATTTGCGTTTTTCA+TGG - Chr1:63304531-63304550 MsG0180003503.01.T01:intron 25.0%
!! GACCTAGAACATATTATTTT+AGG + Chr1:63306582-63306601 None:intergenic 25.0%
!! TATCTGAAAGTCTGAATTTT+GGG - Chr1:63304481-63304500 MsG0180003503.01.T01:intron 25.0%
!! TTATCTGAAAGTCTGAATTT+TGG - Chr1:63304480-63304499 MsG0180003503.01.T01:intron 25.0%
!!! ATTAATTTGCATGTATAGTG+TGG - Chr1:63304188-63304207 MsG0180003503.01.T01:intron 25.0%
!!! CTGATATTTTTTAGCAGTTT+GGG + Chr1:63305327-63305346 None:intergenic 25.0%
!!! GAACAGATAAATAGTTCTAA+TGG + Chr1:63305898-63305917 None:intergenic 25.0%
!!! GAATCAGCTTTTAACTTTTA+AGG - Chr1:63305161-63305180 MsG0180003503.01.T01:intron 25.0%
!!! GTTCTAGTTTTGTTTTATGA+GGG + Chr1:63306076-63306095 None:intergenic 25.0%
!!! TGTTCTAGTTTTGTTTTATG+AGG + Chr1:63306077-63306096 None:intergenic 25.0%
!!! TTCTTTTAGATTAGCTAAGT+AGG - Chr1:63305272-63305291 MsG0180003503.01.T01:intron 25.0%
AAGAATCTCTGACATTGAAA+TGG + Chr1:63305257-63305276 None:intergenic 30.0%
AAGAGAATCTGAATCTGAAT+AGG + Chr1:63303856-63303875 None:intergenic 30.0%
AATTGAATACAAAAGGAGCT+TGG + Chr1:63304906-63304925 None:intergenic 30.0%
ACTTCTCACAGAAATTCAAT+GGG - Chr1:63304607-63304626 MsG0180003503.01.T01:intron 30.0%
AGAACATCAATTACCATATG+TGG + Chr1:63305840-63305859 None:intergenic 30.0%
AGAGAATCTGAATCTGAATA+GGG + Chr1:63303855-63303874 None:intergenic 30.0%
AGATGTAAGTTTAACATGCT+AGG + Chr1:63306869-63306888 None:intergenic 30.0%
AGGTTATGATAAATTGGATG+AGG + Chr1:63306048-63306067 None:intergenic 30.0%
AGTCTTTCATGTAGAACAAT+TGG - Chr1:63305126-63305145 MsG0180003503.01.T01:intron 30.0%
ATTAAACAAACTCTGATCCT+TGG - Chr1:63305978-63305997 MsG0180003503.01.T01:CDS 30.0%
ATTTACCTTTAGATCTTTGG+AGG - Chr1:63306756-63306775 MsG0180003503.01.T01:intron 30.0%
GAGTATAGCATAAAATTTGG+TGG - Chr1:63306447-63306466 MsG0180003503.01.T01:intron 30.0%
GATAATTAGCTAGGGAAAAT+AGG + Chr1:63307034-63307053 None:intergenic 30.0%
GATGCTACACAAAACAATTA+GGG - Chr1:63306701-63306720 MsG0180003503.01.T01:intron 30.0%
GTTGGGTTTATATCATCAAT+TGG - Chr1:63306340-63306359 MsG0180003503.01.T01:intron 30.0%
GTTGTTGAATGAGAAAGATT+TGG + Chr1:63303912-63303931 None:intergenic 30.0%
TATATCATCAATTGGAGATG+TGG - Chr1:63306348-63306367 MsG0180003503.01.T01:intron 30.0%
TGATGCTACACAAAACAATT+AGG - Chr1:63306700-63306719 MsG0180003503.01.T01:intron 30.0%
TGCATCTCAATCTATCAAAT+GGG + Chr1:63305729-63305748 None:intergenic 30.0%
TTAAACAAACTCTGATCCTT+GGG - Chr1:63305979-63305998 MsG0180003503.01.T01:CDS 30.0%
TTGTTCTACATGAAAGACTA+AGG + Chr1:63305125-63305144 None:intergenic 30.0%
TTTACATTTCAGCGCAAATT+CGG + Chr1:63306243-63306262 None:intergenic 30.0%
TTTACCTTTAGATCTTTGGA+GGG - Chr1:63306757-63306776 MsG0180003503.01.T01:intron 30.0%
! ACTAATTTTATATGGCACAC+AGG - Chr1:63307295-63307314 MsG0180003503.01.T01:CDS 30.0%
! AGCTGTTATTGGTGATTATA+AGG - Chr1:63305041-63305060 MsG0180003503.01.T01:intron 30.0%
! ATCTGAAAGTCTGAATTTTG+GGG - Chr1:63304482-63304501 MsG0180003503.01.T01:intron 30.0%
! TTTCTAGTGATGGAAAAATG+TGG - Chr1:63306477-63306496 MsG0180003503.01.T01:intron 30.0%
!! TGGTATTGTTTTTCTAGTGA+TGG - Chr1:63306467-63306486 MsG0180003503.01.T01:intron 30.0%
!!! AAACCTGTATTTTGGGTTAA+CGG - Chr1:63305762-63305781 MsG0180003503.01.T01:CDS 30.0%
!!! GCTGATATTTTTTAGCAGTT+TGG + Chr1:63305328-63305347 None:intergenic 30.0%
!!! TTTGTTTTATGAGGGTCTAT+AGG + Chr1:63306068-63306087 None:intergenic 30.0%
AAAGAGGAATTGAAACCAGA+TGG + Chr1:63306191-63306210 None:intergenic 35.0%
AAGAGGAATTGAAACCAGAT+GGG + Chr1:63306190-63306209 None:intergenic 35.0%
AATTTGAATGTCCTCTTTCC+AGG - Chr1:63305483-63305502 MsG0180003503.01.T01:intron 35.0%
ACAATAAAAATCTCAGCAGC+TGG + Chr1:63304851-63304870 None:intergenic 35.0%
ACTGTTGCAATGTAGCAAAA+AGG + Chr1:63304769-63304788 None:intergenic 35.0%
ACTTTCGAACTCATACAATG+AGG - Chr1:63306097-63306116 MsG0180003503.01.T01:intron 35.0%
ATTTGAATGTCCTCTTTCCA+GGG - Chr1:63305484-63305503 MsG0180003503.01.T01:intron 35.0%
CAGCAAACGATAACTCATAA+AGG + Chr1:63305456-63305475 None:intergenic 35.0%
CAGCTATTAAAAGGTAATGC+TGG - Chr1:63307148-63307167 MsG0180003503.01.T01:intron 35.0%
CTTGTTAATTAGGCCACATA+TGG - Chr1:63305824-63305843 MsG0180003503.01.T01:intron 35.0%
GAATTGTAGAGAAGGTCTAT+TGG - Chr1:63307447-63307466 MsG0180003503.01.T01:CDS 35.0%
GACTTCTCACAGAAATTCAA+TGG - Chr1:63304606-63304625 MsG0180003503.01.T01:intron 35.0%
GTGCATCTCAATCTATCAAA+TGG + Chr1:63305730-63305749 None:intergenic 35.0%
GTTTAACATGCTAGGTTTGT+TGG + Chr1:63306861-63306880 None:intergenic 35.0%
GTTTGAAAAATCCTGGAAGT+TGG - Chr1:63307102-63307121 MsG0180003503.01.T01:intron 35.0%
TACGAAGATTGTTCAATAGC+AGG + Chr1:63307000-63307019 None:intergenic 35.0%
TCTGCTTATACAGCATTCAA+AGG - Chr1:63306662-63306681 MsG0180003503.01.T01:CDS 35.0%
TGGAAATTGAACTGAAGAAC+TGG + Chr1:63306901-63306920 None:intergenic 35.0%
TGGGATAGTTTATTTAGTGG+TGG + Chr1:63305710-63305729 None:intergenic 35.0%
TGTTGCAGTACCATTACTAT+GGG - Chr1:63307373-63307392 MsG0180003503.01.T01:CDS 35.0%
TTCAATAGCAGGTGAATGAA+TGG + Chr1:63306989-63307008 None:intergenic 35.0%
TTGTTGCAAAAAACTGCTTG+AGG - Chr1:63304375-63304394 MsG0180003503.01.T01:intron 35.0%
TTTGGAAGAACGATGAATGA+TGG + Chr1:63303894-63303913 None:intergenic 35.0%
! AAAAATCCTGGAAGTTGGTT+GGG - Chr1:63307107-63307126 MsG0180003503.01.T01:intron 35.0%
! AGAAATTCAATGGGTTTCTC+AGG - Chr1:63304616-63304635 MsG0180003503.01.T01:intron 35.0%
! ATCTGGAAGAACAAGTGTTT+TGG + Chr1:63306730-63306749 None:intergenic 35.0%
! CGATGAATGATGGAATTGAA+TGG + Chr1:63303884-63303903 None:intergenic 35.0%
! CTTATGGGATTGTGCATTTT+TGG - Chr1:63306270-63306289 MsG0180003503.01.T01:intron 35.0%
! TCCTCTTTTGCTGAATTACT+GGG - Chr1:63306203-63306222 MsG0180003503.01.T01:intron 35.0%
! TGAATGATGGAATTGAATGG+TGG + Chr1:63303881-63303900 None:intergenic 35.0%
! TGCAACAGTTATCTTTTGTC+AGG - Chr1:63304780-63304799 MsG0180003503.01.T01:intron 35.0%
! TTCCTCTTTTGCTGAATTAC+TGG - Chr1:63306202-63306221 MsG0180003503.01.T01:intron 35.0%
!! GAATTTTGGGGAAATTGTGT+TGG - Chr1:63304494-63304513 MsG0180003503.01.T01:intron 35.0%
!! GATTTTGTAGAGAAGTGCAA+GGG + Chr1:63306126-63306145 None:intergenic 35.0%
!! TGATTTTGTAGAGAAGTGCA+AGG + Chr1:63306127-63306146 None:intergenic 35.0%
!!! AACCTGTATTTTGGGTTAAC+GGG - Chr1:63305763-63305782 MsG0180003503.01.T01:CDS 35.0%
!!! ATTGTGCATTTTTGGTTCAG+TGG - Chr1:63306278-63306297 MsG0180003503.01.T01:intron 35.0%
AAAGAGGATGGGGAATGATT+TGG - Chr1:63306418-63306437 MsG0180003503.01.T01:intron 40.0%
AACTACATGGATCCCAATCA+AGG - Chr1:63305362-63305381 MsG0180003503.01.T01:intron 40.0%
AAGGAAGCCACAGTTTCTTA+GGG - Chr1:63306811-63306830 MsG0180003503.01.T01:intron 40.0%
ACCCAGTAATTCAGCAAAAG+AGG + Chr1:63306207-63306226 None:intergenic 40.0%
AGAGGAATTGAAACCAGATG+GGG + Chr1:63306189-63306208 None:intergenic 40.0%
AGAGTGGTTGAAAAGAGGAT+GGG - Chr1:63306407-63306426 MsG0180003503.01.T01:intron 40.0%
AGTGAGCTATCTGTGAAGTT+GGG - Chr1:63306323-63306342 MsG0180003503.01.T01:intron 40.0%
ATCAGTTCCCTAAGAAACTG+TGG + Chr1:63306821-63306840 None:intergenic 40.0%
ATGCTGGTAAAACACATGCT+AGG - Chr1:63307164-63307183 MsG0180003503.01.T01:intron 40.0%
ATTCCTTCGAATTCTTCCCT+TGG - Chr1:63304023-63304042 MsG0180003503.01.T01:intron 40.0%
CTAATGGTCACAGAGAATTG+AGG + Chr1:63307274-63307293 None:intergenic 40.0%
CTCATGTTTCACAGAAGCAA+GGG - Chr1:63305297-63305316 MsG0180003503.01.T01:intron 40.0%
CTCTCGTATCTTCTGCAAAT+TGG + Chr1:63305957-63305976 None:intergenic 40.0%
CTGTTGCAGTACCATTACTA+TGG - Chr1:63307372-63307391 MsG0180003503.01.T01:CDS 40.0%
GATTGAGATGCTTAGTGATG+TGG - Chr1:63305552-63305571 MsG0180003503.01.T01:intron 40.0%
GCAATAAGTTACCCCATTAC+AGG - Chr1:63306947-63306966 MsG0180003503.01.T01:intron 40.0%
GTACATGCAATGCAATCAGT+AGG + Chr1:63304747-63304766 None:intergenic 40.0%
GTATCAAGAGAGCAACTACA+TGG - Chr1:63305349-63305368 MsG0180003503.01.T01:intron 40.0%
GTTACCCTCCAAAGATCTAA+AGG + Chr1:63306764-63306783 None:intergenic 40.0%
GTTGCAGTACCATTACTATG+GGG - Chr1:63307374-63307393 MsG0180003503.01.T01:CDS 40.0%
TAATGGTACTGCAACAGTCA+TGG + Chr1:63307369-63307388 None:intergenic 40.0%
TCTCATGTTTCACAGAAGCA+AGG - Chr1:63305296-63305315 MsG0180003503.01.T01:intron 40.0%
TCTTTCCAGGGACTTGATAT+GGG - Chr1:63305496-63305515 MsG0180003503.01.T01:intron 40.0%
TGAAAGGAAGTAAGAACCCA+AGG + Chr1:63305998-63306017 None:intergenic 40.0%
TGATGGAAAAATGTGGTGCA+TGG - Chr1:63306484-63306503 MsG0180003503.01.T01:intron 40.0%
TGCTGGTAAAACACATGCTA+GGG - Chr1:63307165-63307184 MsG0180003503.01.T01:intron 40.0%
TTTACCTTCTTCACCACTGA+CGG - Chr1:63304644-63304663 MsG0180003503.01.T01:intron 40.0%
! ACAAGTAGCTGGAGCTTTTA+TGG - Chr1:63307069-63307088 MsG0180003503.01.T01:intron 40.0%
! ACAATATCAAAGCATCCGAG+TGG + Chr1:63304992-63305011 None:intergenic 40.0%
! AGGATGAATGAGTTGCTTTG+GGG + Chr1:63303988-63304007 None:intergenic 40.0%
! CAAGTAGCTGGAGCTTTTAT+GGG - Chr1:63307070-63307089 MsG0180003503.01.T01:intron 40.0%
! GAAAAATCCTGGAAGTTGGT+TGG - Chr1:63307106-63307125 MsG0180003503.01.T01:intron 40.0%
! GAAGGAATCGTTGTTGTTGT+TGG + Chr1:63304011-63304030 None:intergenic 40.0%
! GAGGATGAATGAGTTGCTTT+GGG + Chr1:63303989-63304008 None:intergenic 40.0%
!! GGGGTTTGAGCTTGTTAATT+AGG - Chr1:63305814-63305833 MsG0180003503.01.T01:intron 40.0%
!! TTGATGCAGAAGCTGTTTTG+TGG - Chr1:63304247-63304266 MsG0180003503.01.T01:intron 40.0%
AAACCAGATGGGGAACGATA+TGG + Chr1:63306179-63306198 None:intergenic 45.0%
AACCAGATGGGGAACGATAT+GGG + Chr1:63306178-63306197 None:intergenic 45.0%
AAGAAACTGTGGCTTCCTTG+TGG + Chr1:63306810-63306829 None:intergenic 45.0%
AAGGATTGGAAGGATGAGAG+TGG - Chr1:63306391-63306410 MsG0180003503.01.T01:intron 45.0%
ACCTAGACAAAGGCCTTGAT+TGG + Chr1:63305378-63305397 None:intergenic 45.0%
AGAAACTGTGGCTTCCTTGT+GGG + Chr1:63306809-63306828 None:intergenic 45.0%
ATACTGTCTTGGAGCATGGT+GGG - Chr1:63305581-63305600 MsG0180003503.01.T01:intron 45.0%
ATTTCTCCACACATCCCACA+AGG - Chr1:63306792-63306811 MsG0180003503.01.T01:intron 45.0%
CAAGATACTGTCTTGGAGCA+TGG - Chr1:63305577-63305596 MsG0180003503.01.T01:intron 45.0%
CAAGGAAGCCACAGTTTCTT+AGG - Chr1:63306810-63306829 MsG0180003503.01.T01:intron 45.0%
CACTAAGCATCTCAATCGAG+CGG + Chr1:63305549-63305568 None:intergenic 45.0%
CATATCAAGTCCCTGGAAAG+AGG + Chr1:63305497-63305516 None:intergenic 45.0%
CCTAGACAAAGGCCTTGATT+GGG + Chr1:63305377-63305396 None:intergenic 45.0%
CTAGCTGTTAAAAGTGGAGG+AGG - Chr1:63307425-63307444 MsG0180003503.01.T01:CDS 45.0%
CTAGTGTGCACAAGTGACAT+AGG - Chr1:63305660-63305679 MsG0180003503.01.T01:intron 45.0%
CTAGTGTGCACAAGTGACAT+AGG + Chr1:63305679-63305660 None:intergenic 45.0%
CTCCCGTTAACCCAAAATAC+AGG + Chr1:63305768-63305787 None:intergenic 45.0%
CTCTTTCCAGGGACTTGATA+TGG - Chr1:63305495-63305514 MsG0180003503.01.T01:intron 45.0%
CTTCGAATTCTTCCCTTGGT+CGG - Chr1:63304027-63304046 MsG0180003503.01.T01:intron 45.0%
CTTCGCCTAGCTGTTAAAAG+TGG - Chr1:63307419-63307438 MsG0180003503.01.T01:CDS 45.0%
GAGAGTGGTTGAAAAGAGGA+TGG - Chr1:63306406-63306425 MsG0180003503.01.T01:intron 45.0%
GAGTGAGCTATCTGTGAAGT+TGG - Chr1:63306322-63306341 MsG0180003503.01.T01:intron 45.0%
GAGTGGTTGAAAAGAGGATG+GGG - Chr1:63306408-63306427 MsG0180003503.01.T01:intron 45.0%
GCTGGTAAAACACATGCTAG+GGG - Chr1:63307166-63307185 MsG0180003503.01.T01:intron 45.0%
GGAGGATGAATGAGTTGCTT+TGG + Chr1:63303990-63304009 None:intergenic 45.0%
GGATGAGAGTGGTTGAAAAG+AGG - Chr1:63306402-63306421 MsG0180003503.01.T01:intron 45.0%
GTGCACAAGTGACATAGGTT+TGG + Chr1:63305684-63305665 None:intergenic 45.0%
TATGTCACTGGAGAGACTGA+AGG - Chr1:63306372-63306391 MsG0180003503.01.T01:intron 45.0%
TGGAGATGTGGTTATGTCAC+TGG - Chr1:63306360-63306379 MsG0180003503.01.T01:intron 45.0%
TGGAGGAGGAATTGTAGAGA+AGG - Chr1:63307439-63307458 MsG0180003503.01.T01:CDS 45.0%
TGGTGGCAAAATGTTGTGCA+TGG + Chr1:63305693-63305712 None:intergenic 45.0%
TGTGGTGCAAGATACTGTCT+TGG - Chr1:63305570-63305589 MsG0180003503.01.T01:intron 45.0%
! CAAAGAGTGCACCTAGACAA+AGG + Chr1:63305388-63305407 None:intergenic 45.0%
! GGAATCGTTGTTGTTGTTGG+AGG + Chr1:63304008-63304027 None:intergenic 45.0%
! GGATGAATGAGTTGCTTTGG+GGG + Chr1:63303987-63304006 None:intergenic 45.0%
! GGCAGAAGACTCTGCATTTT+TGG - Chr1:63305517-63305536 MsG0180003503.01.T01:intron 45.0%
!! ACTGACGGACTCATCCAAAT+CGG - Chr1:63304659-63304678 MsG0180003503.01.T01:intron 45.0%
!! CTCCTCCACTTTTAACAGCT+AGG + Chr1:63307427-63307446 None:intergenic 45.0%
!! GCAGGGGTTCAATTTGTTAG+GGG - Chr1:63305795-63305814 MsG0180003503.01.T01:CDS 45.0%
!! GGCAGGGGTTCAATTTGTTA+GGG - Chr1:63305794-63305813 MsG0180003503.01.T01:CDS 45.0%
AACCAACCCAACCAACTTCC+AGG + Chr1:63307116-63307135 None:intergenic 50.0%
ACGAAGAAGACGAGGATGAG+AGG + Chr1:63303960-63303979 None:intergenic 50.0%
ACTCAACGCCTCAAAAGGGT+AGG + Chr1:63306306-63306325 None:intergenic 50.0%
AGACGAGGATGAGAGGTAGA+AGG + Chr1:63303953-63303972 None:intergenic 50.0%
AGCTCACTCAACGCCTCAAA+AGG + Chr1:63306311-63306330 None:intergenic 50.0%
ATCCCATATCGTTCCCCATC+TGG - Chr1:63306173-63306192 MsG0180003503.01.T01:intron 50.0%
CACTGGAGAGACTGAAGGAT+TGG - Chr1:63306377-63306396 MsG0180003503.01.T01:intron 50.0%
CATCCAAATCGGAGGCAACA+TGG - Chr1:63304670-63304689 MsG0180003503.01.T01:intron 50.0%
CCCAATCAAGGCCTTTGTCT+AGG - Chr1:63305374-63305393 MsG0180003503.01.T01:intron 50.0%
CCTTGGTCGGACGATGATAA+CGG - Chr1:63304040-63304059 MsG0180003503.01.T01:intron 50.0%
CGACCAAGGGAAGAATTCGA+AGG + Chr1:63304029-63304048 None:intergenic 50.0%
CGCCTAGCTGTTAAAAGTGG+AGG - Chr1:63307422-63307441 MsG0180003503.01.T01:CDS 50.0%
CGTTATCATCGTCCGACCAA+GGG + Chr1:63304042-63304061 None:intergenic 50.0%
GAACCATGTTGCCTCCGATT+TGG + Chr1:63304676-63304695 None:intergenic 50.0%
GAGAGGTAGAAGGAGCAACA+GGG + Chr1:63303943-63303962 None:intergenic 50.0%
GATACTGTCTTGGAGCATGG+TGG - Chr1:63305580-63305599 MsG0180003503.01.T01:intron 50.0%
GATTTGGATGAGTCCGTCAG+TGG + Chr1:63304660-63304679 None:intergenic 50.0%
GCTCACTCAACGCCTCAAAA+GGG + Chr1:63306310-63306329 None:intergenic 50.0%
GGAGAGACTGAAGGATTGGA+AGG - Chr1:63306381-63306400 MsG0180003503.01.T01:intron 50.0%
TACTGTCTTGGAGCATGGTG+GGG - Chr1:63305582-63305601 MsG0180003503.01.T01:intron 50.0%
TGAGAGGTAGAAGGAGCAAC+AGG + Chr1:63303944-63303963 None:intergenic 50.0%
TTCTGCCCATATCAAGTCCC+TGG + Chr1:63305504-63305523 None:intergenic 50.0%
TTGGGTTAACGGGAGCAAGA+GGG - Chr1:63305773-63305792 MsG0180003503.01.T01:CDS 50.0%
! ATCCTGGAAGTTGGTTGGGT+TGG - Chr1:63307111-63307130 MsG0180003503.01.T01:intron 50.0%
! GAGGATGGGGAATGATTTGG+TGG - Chr1:63306421-63306440 MsG0180003503.01.T01:intron 50.0%
! GGGCAGGGGTTCAATTTGTT+AGG - Chr1:63305793-63305812 MsG0180003503.01.T01:CDS 50.0%
! TTTGGGTTAACGGGAGCAAG+AGG - Chr1:63305772-63305791 MsG0180003503.01.T01:CDS 50.0%
!! TGGAAGTTGGTTGGGTTGGT+TGG - Chr1:63307115-63307134 MsG0180003503.01.T01:intron 50.0%
ACAGGTGATTGCCGCAGAGA+AGG - Chr1:63307313-63307332 MsG0180003503.01.T01:CDS 55.0%
ACCTCTGCTTGCCTTCTCTG+CGG + Chr1:63307327-63307346 None:intergenic 55.0%
CCGTTATCATCGTCCGACCA+AGG + Chr1:63304043-63304062 None:intergenic 55.0%
GAGTCCGTCAGTGGTGAAGA+AGG + Chr1:63304651-63304670 None:intergenic 55.0%
GGAGGAACGCCCCATAGTAA+TGG + Chr1:63307386-63307405 None:intergenic 55.0%
GGGGAGAAACGAAGAAGACG+AGG + Chr1:63303968-63303987 None:intergenic 55.0%
TCAGAAGACTTGACGCGACG+AGG + Chr1:63304698-63304717 None:intergenic 55.0%
TGGAAGAGGGCGAAACCACT+CGG - Chr1:63304974-63304993 MsG0180003503.01.T01:intron 55.0%
TGGCTTCCTTGTGGGATGTG+TGG + Chr1:63306801-63306820 None:intergenic 55.0%
TTAACGGGAGCAAGAGGGCA+GGG - Chr1:63305778-63305797 MsG0180003503.01.T01:CDS 55.0%
! AGGCGAAGTGTCTCAGAAGC+TGG + Chr1:63307407-63307426 None:intergenic 55.0%
! CAGTGGAGCCTACCCTTTTG+AGG - Chr1:63306295-63306314 MsG0180003503.01.T01:intron 55.0%
! CGAAGTGTCTCAGAAGCTGG+AGG + Chr1:63307404-63307423 None:intergenic 55.0%
! GACGGACTCATCCAAATCGG+AGG - Chr1:63304662-63304681 MsG0180003503.01.T01:intron 55.0%
GTTAACGGGAGCAAGAGGGC+AGG - Chr1:63305777-63305796 MsG0180003503.01.T01:CDS 60.0%
TAACGGGAGCAAGAGGGCAG+GGG - Chr1:63305779-63305798 MsG0180003503.01.T01:CDS 60.0%
! TGTCTTGGAGCATGGTGGGG+AGG - Chr1:63305585-63305604 MsG0180003503.01.T01:intron 60.0%
! TTGGAGCATGGTGGGGAGGT+AGG - Chr1:63305589-63305608 MsG0180003503.01.T01:intron 60.0%
GCCGCAGAGAAGGCAAGCAG+AGG - Chr1:63307323-63307342 MsG0180003503.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 63303836 63307487 63303836 ID=MsG0180003503.01;Name=MsG0180003503.01
Chr1 mRNA 63303836 63307487 63303836 ID=MsG0180003503.01.T01;Parent=MsG0180003503.01;Name=MsG0180003503.01.T01;_AED=0.45;_eAED=0.45;_QI=0|0|0|1|0.75|0.8|5|0|237
Chr1 exon 63307262 63307487 63307262 ID=MsG0180003503.01.T01:exon:4670;Parent=MsG0180003503.01.T01
Chr1 exon 63306605 63306705 63306605 ID=MsG0180003503.01.T01:exon:4669;Parent=MsG0180003503.01.T01
Chr1 exon 63305899 63306012 63305899 ID=MsG0180003503.01.T01:exon:4668;Parent=MsG0180003503.01.T01
Chr1 exon 63305717 63305818 63305717 ID=MsG0180003503.01.T01:exon:4667;Parent=MsG0180003503.01.T01
Chr1 exon 63303836 63304006 63303836 ID=MsG0180003503.01.T01:exon:4666;Parent=MsG0180003503.01.T01
Chr1 CDS 63307262 63307487 63307262 ID=MsG0180003503.01.T01:cds;Parent=MsG0180003503.01.T01
Chr1 CDS 63306605 63306705 63306605 ID=MsG0180003503.01.T01:cds;Parent=MsG0180003503.01.T01
Chr1 CDS 63305899 63306012 63305899 ID=MsG0180003503.01.T01:cds;Parent=MsG0180003503.01.T01
Chr1 CDS 63305717 63305818 63305717 ID=MsG0180003503.01.T01:cds;Parent=MsG0180003503.01.T01
Chr1 CDS 63303836 63304006 63303836 ID=MsG0180003503.01.T01:cds;Parent=MsG0180003503.01.T01
Gene Sequence

>MsG0180003503.01.T01

ATGGCTGAAACTTCAACCCTATTCAGATTCAGATTCTCTTCTCCACCATTCAATTCCATCATTCATCGTTCTTCCAAATCTTTCTCATTCAACAACAACTCTTTCCCTGTTGCTCCTTCTACCTCTCATCCTCGTCTTCTTCGTTTCTCCCCCAAAGCAACTCATTCATCCTCCAACAACAACAACGATTCCTTCGAATTCTTCCCTTGGTCGGACGATGATAACGAAATTCAATGGGTTTCTCAGGACAAATTTACCTTCTTCACCACTGACGGACTCATCCAAATCGGAGGCAACATGGTTCCTCGTCGCGTCAAGTCTTCTGATAAGCAAGGGAAATCCCAAACTGCTAAAAAATATCAGCGGTATCAAGAGAGCAACTACATGGATCCCAATCAAGGCCTTTGTCTAGGTGCACTCTTTGATATTGCAGCTACAAATGGACTTGATATGGGCAGAAGACTCTGCATTTTTGGTTTCTGCCGCTCGATTGAGATGCTTAGTGATGTGGTGCAAGATACTGTCTTGGAGCATGGTGGGGAGGTGATTGCCGCAGAGAAGGCAAGCAGAGGTGATTTGCATGAAAAGCTAACCATGACTGTTGCAGTACCATTACTATGGGGCGTTCCTCCAGCTTCTGAGACACTTCGCCTAGCTGTTAAAAGTGGAGGAGGAATTGTAGAGAAGGTCTATTGGCAATTCGACTTTCTGTAG

Protein sequence

>MsG0180003503.01.T01

MAETSTLFRFRFSSPPFNSIIHRSSKSFSFNNNSFPVAPSTSHPRLLRFSPKATHSSSNNNNDSFEFFPWSDDDNEIQWVSQDKFTFFTTDGLIQIGGNMVPRRVKSSDKQGKSQTAKKYQRYQESNYMDPNQGLCLGALFDIAATNGLDMGRRLCIFGFCRSIEMLSDVVQDTVLEHGGEVIAAEKASRGDLHEKLTMTVAVPLLWGVPPASETLRLAVKSGGGIVEKVYWQFDFL*