Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005057.01.T01 | XP_013461876.1 | 96.444 | 478 | 13 | 2 | 1 | 478 | 1 | 474 | 0 | 927 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005057.01.T01 | D2XNR0 | 96.444 | 478 | 13 | 2 | 1 | 478 | 1 | 474 | 0 | 927 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005057.01.T01 | A0A072V2M9 | 96.444 | 478 | 13 | 2 | 1 | 478 | 1 | 474 | 0.0 | 927 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0180005055.01 | MsG0180005057.01 | PPI |
| MsG0180004590.01 | MsG0180005057.01 | PPI |
| MsG0180006118.01 | MsG0180005057.01 | PPI |
| MsG0180005057.01 | MsG0880047379.01 | PPI |
| MsG0880047378.01 | MsG0180005057.01 | PPI |
| MsG0380017388.01 | MsG0180005057.01 | PPI |
| MsG0180005057.01 | MsG0180004031.01 | PPI |
| MsG0180005057.01 | MsG0380017386.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005057.01.T01 | MTR_3g106485 | 96.444 | 478 | 13 | 2 | 1 | 478 | 1 | 474 | 0.0 | 927 |
| MsG0180005057.01.T01 | MTR_3g106480 | 93.933 | 478 | 29 | 0 | 1 | 478 | 1 | 478 | 0.0 | 917 |
| MsG0180005057.01.T01 | MTR_3g106420 | 92.887 | 478 | 34 | 0 | 1 | 478 | 3 | 480 | 0.0 | 883 |
| MsG0180005057.01.T01 | MTR_1g115145 | 89.562 | 479 | 43 | 3 | 1 | 478 | 1 | 473 | 0.0 | 849 |
| MsG0180005057.01.T01 | MTR_1g083190 | 89.958 | 478 | 40 | 1 | 1 | 478 | 3 | 472 | 0.0 | 840 |
| MsG0180005057.01.T01 | MTR_1g073400 | 90.377 | 478 | 42 | 1 | 1 | 478 | 1 | 474 | 0.0 | 838 |
| MsG0180005057.01.T01 | MTR_1g071130 | 85.565 | 478 | 40 | 2 | 1 | 478 | 1 | 449 | 0.0 | 834 |
| MsG0180005057.01.T01 | MTR_3g106430 | 90.566 | 477 | 41 | 2 | 1 | 477 | 1 | 473 | 0.0 | 821 |
| MsG0180005057.01.T01 | MTR_3g106470 | 81.132 | 477 | 34 | 2 | 1 | 477 | 32 | 452 | 0.0 | 733 |
| MsG0180005057.01.T01 | MTR_8g063830 | 80.215 | 465 | 51 | 5 | 1 | 464 | 1 | 425 | 0.0 | 667 |
| MsG0180005057.01.T01 | MTR_3g065540 | 63.478 | 115 | 15 | 1 | 40 | 154 | 14 | 101 | 8.65e-39 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005057.01.T01 | AT5G25260 | 74.051 | 474 | 111 | 2 | 1 | 474 | 1 | 462 | 0.0 | 726 |
| MsG0180005057.01.T01 | AT5G25250 | 73.362 | 473 | 112 | 2 | 1 | 473 | 1 | 459 | 0.0 | 709 |
| MsG0180005057.01.T01 | AT5G64870 | 70.127 | 472 | 130 | 1 | 2 | 473 | 3 | 463 | 0.0 | 649 |
Find 111 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCCAAGCCGCCTTCTTCT+TGG | 0.241127 | 1:-86312329 | None:intergenic |
| TCACGAGTATTTCTCGTATC+TGG | 0.250443 | 1:+86312051 | MsG0180005057.01.T01:CDS |
| TTGAGCCTAAGATTAGTATT+TGG | 0.251063 | 1:+86313120 | MsG0180005057.01.T01:CDS |
| CAACTTGAGTTGAATCAATT+CGG | 0.284832 | 1:+86311980 | MsG0180005057.01.T01:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.307216 | 1:+86313047 | MsG0180005057.01.T01:CDS |
| AACAAGTTCATTAACATGAT+TGG | 0.311801 | 1:-86311852 | None:intergenic |
| CGAAGAAGGCTGTGGCTCTA+AGG | 0.317541 | 1:+86312380 | MsG0180005057.01.T01:CDS |
| TGTAGGTACAAGAGGCTAAC+TGG | 0.318803 | 1:+86312793 | MsG0180005057.01.T01:intron |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 1:+86312127 | MsG0180005057.01.T01:CDS |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.319807 | 1:+86313259 | MsG0180005057.01.T01:CDS |
| GTGAAATTGGTTCGAAATTG+AGG | 0.356446 | 1:+86312140 | MsG0180005057.01.T01:CDS |
| TCAGAATATCTTGCGATAAC+TGG | 0.374224 | 1:+86311602 | MsG0180005057.01.T01:CDS |
| TTAGTCCAAATACTAATCTT+AGG | 0.384650 | 1:-86313125 | None:intergenic |
| CAATGCGAATGTTAAGCAAT+TGG | 0.388576 | 1:+86312015 | MsG0180005057.01.T01:CDS |
| GGCTTGGACCAAGGCGGCTC+AGG | 0.398702 | 1:+86312342 | MsG0180005057.01.T01:CDS |
| GGCTGGTGAAAGTGAGAAGC+AGG | 0.419667 | 1:+86312228 | MsG0180005057.01.T01:CDS |
| CATGTTAATGAACTTGTTCA+AGG | 0.419850 | 1:+86311857 | MsG0180005057.01.T01:CDS |
| TTCAGCCACCTGAGCCGCCT+TGG | 0.429757 | 1:-86312350 | None:intergenic |
| GAAGAAGGCGGCTTGGACCA+AGG | 0.448835 | 1:+86312333 | MsG0180005057.01.T01:CDS |
| TGGACTAACGGTGGTGATAA+TGG | 0.448931 | 1:+86313140 | MsG0180005057.01.T01:CDS |
| ATCATGGGGTGAAATAAGTT+TGG | 0.453058 | 1:-86311822 | None:intergenic |
| AACTTGAGTTGAATCAATTC+GGG | 0.454308 | 1:+86311981 | MsG0180005057.01.T01:CDS |
| CTGGCATGTTGCCTCCTGCT+TGG | 0.459012 | 1:+86313255 | MsG0180005057.01.T01:CDS |
| TGAGAATCAGAGAGAGGCTG+AGG | 0.460493 | 1:+86312282 | MsG0180005057.01.T01:CDS |
| AGCAATTCTGTATGAGAAGA+AGG | 0.462456 | 1:+86312845 | MsG0180005057.01.T01:CDS |
| CTCCCTGCCGTCTTCACTAT+CGG | 0.465580 | 1:+86311761 | MsG0180005057.01.T01:CDS |
| GGCTGAAGTTGAGGCGAAGA+AGG | 0.470534 | 1:+86312366 | MsG0180005057.01.T01:CDS |
| AAGACTGTCCATGAGCAAAC+TGG | 0.472099 | 1:+86313236 | MsG0180005057.01.T01:CDS |
| TTGGACCAAGGCGGCTCAGG+TGG | 0.476684 | 1:+86312345 | MsG0180005057.01.T01:CDS |
| CACGAGTATTTCTCGTATCT+GGG | 0.484574 | 1:+86312052 | MsG0180005057.01.T01:CDS |
| TGAAATTGGTTCGAAATTGA+GGG | 0.484739 | 1:+86312141 | MsG0180005057.01.T01:CDS |
| AAACCAAAATCAACATGTAC+CGG | 0.488241 | 1:+86311567 | None:intergenic |
| GGGAATAATTGAAGGTGCTA+TGG | 0.488560 | 1:+86313166 | MsG0180005057.01.T01:CDS |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.491718 | 1:+86313260 | MsG0180005057.01.T01:CDS |
| CATGATTGGAGTGTCTATCA+TGG | 0.495785 | 1:-86311838 | None:intergenic |
| TGCTTCCATGACCATGGAGG+AGG | 0.495947 | 1:+86311910 | MsG0180005057.01.T01:CDS |
| CTTGTTCAAGGAATCATTGA+AGG | 0.497958 | 1:+86311869 | MsG0180005057.01.T01:CDS |
| CTCAAGTCCGCGTACTGCCT+CGG | 0.500340 | 1:-86313102 | None:intergenic |
| AACTAAGAAGGTATAGTTCA+CGG | 0.503038 | 1:-86311705 | None:intergenic |
| GAAAACCTCCTCCATGGTCA+TGG | 0.505571 | 1:-86311915 | None:intergenic |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.506083 | 1:+86312089 | MsG0180005057.01.T01:CDS |
| GAAACAACTACACAGCAGTA+AGG | 0.507741 | 1:+86313027 | MsG0180005057.01.T01:CDS |
| GGAATAATTGAAGGTGCTAT+GGG | 0.513120 | 1:+86313167 | MsG0180005057.01.T01:CDS |
| GGACCGATAGTGAAGACGGC+AGG | 0.514852 | 1:-86311764 | None:intergenic |
| AAGACGGCAGGGAGAACGAA+AGG | 0.516090 | 1:-86311752 | None:intergenic |
| TGGCCAAGAAGAAGGCGGCT+TGG | 0.518328 | 1:+86312326 | MsG0180005057.01.T01:CDS |
| TGCTGAGGCTAATTCTGCGT+TGG | 0.520028 | 1:+86312306 | MsG0180005057.01.T01:CDS |
| TAAGTTTGGCGTATTTGAGT+AGG | 0.526369 | 1:-86311808 | None:intergenic |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 1:+86312028 | MsG0180005057.01.T01:CDS |
| ACTCATAGCTTGAACTAAGA+AGG | 0.526930 | 1:-86311717 | None:intergenic |
| GCAACATGCCAGTTTGCTCA+TGG | 0.527154 | 1:-86313244 | None:intergenic |
| TTCTGCGTTGGCCAAGAAGA+AGG | 0.528027 | 1:+86312318 | MsG0180005057.01.T01:CDS |
| CTAAGGGAAGCTGAGTTACA+AGG | 0.536670 | 1:+86312397 | MsG0180005057.01.T01:CDS |
| GGCTCAGGTGGCTGAAGTTG+AGG | 0.543832 | 1:+86312357 | MsG0180005057.01.T01:CDS |
| GAAGAAGGCTGTGGCTCTAA+GGG | 0.545005 | 1:+86312381 | MsG0180005057.01.T01:CDS |
| GTTATTGCGATGCAGAGGGC+TGG | 0.549556 | 1:+86312211 | MsG0180005057.01.T01:CDS |
| GTAGGTACAAGAGGCTAACT+GGG | 0.550232 | 1:+86312794 | MsG0180005057.01.T01:intron |
| GATAAGGATCCCATCCAAGC+AGG | 0.550974 | 1:-86313269 | None:intergenic |
| CTGGATGCTGTAGGTACAAG+AGG | 0.556449 | 1:+86312785 | MsG0180005057.01.T01:intron |
| AGTTGAGGCGAAGAAGGCTG+TGG | 0.558891 | 1:+86312372 | MsG0180005057.01.T01:CDS |
| TGCGAATGTTAAGCAATTGG+TGG | 0.563120 | 1:+86312018 | MsG0180005057.01.T01:CDS |
| AAGATTAGTATTTGGACTAA+CGG | 0.563509 | 1:+86313128 | MsG0180005057.01.T01:CDS |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.569410 | 1:+86313185 | MsG0180005057.01.T01:CDS |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 1:+86313005 | MsG0180005057.01.T01:CDS |
| TCCTCTGAAAACCTCCTCCA+TGG | 0.572262 | 1:-86311921 | None:intergenic |
| TATCTTGCGATAACTGGTGT+AGG | 0.573302 | 1:+86311608 | MsG0180005057.01.T01:CDS |
| ACTAAGAAGGTATAGTTCAC+GGG | 0.573332 | 1:-86311704 | None:intergenic |
| GCAGAGGGGATTGAGACACT+TGG | 0.575929 | 1:+86312960 | MsG0180005057.01.T01:CDS |
| GAGAGAGGCTGAGGTTGCTG+AGG | 0.577125 | 1:+86312291 | MsG0180005057.01.T01:CDS |
| TCTAGCTGCTTCCATGACCA+TGG | 0.581097 | 1:+86311904 | MsG0180005057.01.T01:CDS |
| TAAAACTCGAAAAGAAAGCA+TGG | 0.584686 | 1:+86311642 | MsG0180005057.01.T01:CDS |
| CGAAGGTTATTGCGATGCAG+AGG | 0.587186 | 1:+86312206 | MsG0180005057.01.T01:CDS |
| ATGATTGGAGTGTCTATCAT+GGG | 0.587404 | 1:-86311837 | None:intergenic |
| AGGTATAGTTCACGGGTGAG+AGG | 0.596809 | 1:-86311697 | None:intergenic |
| AACGGTGGTGATAATGGTGG+GGG | 0.598797 | 1:+86313146 | MsG0180005057.01.T01:CDS |
| AAACAACTACACAGCAGTAA+GGG | 0.599439 | 1:+86313028 | MsG0180005057.01.T01:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 1:+86312851 | MsG0180005057.01.T01:CDS |
| GACCGATAGTGAAGACGGCA+GGG | 0.602102 | 1:-86311763 | None:intergenic |
| GAGACACTTGGAAATGCTCA+AGG | 0.604890 | 1:+86312972 | MsG0180005057.01.T01:CDS |
| TACGAGAAATACTCGTGACC+AGG | 0.605693 | 1:-86312046 | None:intergenic |
| TAACGGTGGTGATAATGGTG+GGG | 0.609681 | 1:+86313145 | MsG0180005057.01.T01:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 1:+86312118 | MsG0180005057.01.T01:CDS |
| TCTGGGACAAAAGACGCAGA+TGG | 0.620653 | 1:+86312069 | MsG0180005057.01.T01:CDS |
| ATAAATGCCGAGGCAGTACG+CGG | 0.627817 | 1:+86313095 | MsG0180005057.01.T01:CDS |
| CTAACGGTGGTGATAATGGT+GGG | 0.630678 | 1:+86313144 | MsG0180005057.01.T01:CDS |
| ATTGGTTCGAAATTGAGGGA+AGG | 0.631232 | 1:+86312145 | MsG0180005057.01.T01:CDS |
| AGACGGCAGGGAGAACGAAA+GGG | 0.631236 | 1:-86311751 | None:intergenic |
| GAAGGTTATTGCGATGCAGA+GGG | 0.633633 | 1:+86312207 | MsG0180005057.01.T01:CDS |
| GGAAGCTGAGTTACAAGGCG+AGG | 0.636048 | 1:+86312402 | MsG0180005057.01.T01:CDS |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.637623 | 1:+86312090 | MsG0180005057.01.T01:CDS |
| ACGAGGACCGATAGTGAAGA+CGG | 0.639502 | 1:-86311768 | None:intergenic |
| GATTGCTAAAATAAATGCCG+AGG | 0.640801 | 1:+86313085 | MsG0180005057.01.T01:CDS |
| AACCAAAATCAACATGTACC+GGG | 0.642639 | 1:+86311568 | None:intergenic |
| AGAAGCAGGGAATTAAAGTG+AGG | 0.645883 | 1:+86312242 | MsG0180005057.01.T01:CDS |
| TTGCTTGCGAGCATAAAATG+TGG | 0.652025 | 1:-86312901 | None:intergenic |
| GAAAATTGATGCAGAGACGA+AGG | 0.652587 | 1:+86312189 | MsG0180005057.01.T01:CDS |
| AAGAAAGCATGGATTTACCC+TGG | 0.654675 | 1:+86311653 | MsG0180005057.01.T01:CDS |
| TGGACAGTCTTAAACAGAGG+TGG | 0.656626 | 1:-86313224 | None:intergenic |
| TGCGTTGGCCAAGAAGAAGG+CGG | 0.657716 | 1:+86312321 | MsG0180005057.01.T01:CDS |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 1:+86313050 | MsG0180005057.01.T01:CDS |
| TCATGGACAGTCTTAAACAG+AGG | 0.660499 | 1:-86313227 | None:intergenic |
| AAGGATCCCATCCAAGCAGG+AGG | 0.669522 | 1:-86313266 | None:intergenic |
| AGCTGCTTCCATGACCATGG+AGG | 0.676991 | 1:+86311907 | MsG0180005057.01.T01:CDS |
| GAATCAAGCTAGGGTTGACG+TGG | 0.682564 | 1:+86312099 | MsG0180005057.01.T01:CDS |
| ATTAGTATTTGGACTAACGG+TGG | 0.682600 | 1:+86313131 | MsG0180005057.01.T01:CDS |
| TAGTGTTCAGTATGAAACCA+CGG | 0.688180 | 1:+86312486 | MsG0180005057.01.T01:CDS |
| CTTTCATGATCGTCAACACG+AGG | 0.688237 | 1:-86311785 | None:intergenic |
| GCTGGTGAAAGTGAGAAGCA+GGG | 0.692984 | 1:+86312229 | MsG0180005057.01.T01:CDS |
| ACTAACGGTGGTGATAATGG+TGG | 0.694563 | 1:+86313143 | MsG0180005057.01.T01:CDS |
| GAAGGCGGCTTGGACCAAGG+CGG | 0.742023 | 1:+86312336 | MsG0180005057.01.T01:CDS |
| TGATTGGAGTGTCTATCATG+GGG | 0.776734 | 1:-86311836 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATTATAAAATTAAATCATT+TGG | + | Chr1:86312727-86312746 | MsG0180005057.01.T01:intron | 10.0% |
| !! | AAAATTAAATCATTTGGTAA+CGG | + | Chr1:86312733-86312752 | MsG0180005057.01.T01:intron | 15.0% |
| !! | TGCATATTGATATAAAAAGA+TGG | + | Chr1:86312630-86312649 | MsG0180005057.01.T01:intron | 20.0% |
| ! | AACAAGTTCATTAACATGAT+TGG | - | Chr1:86311855-86311874 | None:intergenic | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+CGG | + | Chr1:86313128-86313147 | MsG0180005057.01.T01:CDS | 25.0% |
| ! | AGCAAATGATATATGTTCAA+CGG | - | Chr1:86312695-86312714 | None:intergenic | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | - | Chr1:86313128-86313147 | None:intergenic | 25.0% |
| !! | CTTAATTGAAGTATTACTCT+TGG | - | Chr1:86312576-86312595 | None:intergenic | 25.0% |
| AACAAGAAGTTATAGTTGCA+TGG | - | Chr1:86312517-86312536 | None:intergenic | 30.0% | |
| ATCTGATCAAACTTTCATCA+TGG | + | Chr1:86312660-86312679 | MsG0180005057.01.T01:intron | 30.0% | |
| TAAAACTCGAAAAGAAAGCA+TGG | + | Chr1:86311642-86311661 | MsG0180005057.01.T01:CDS | 30.0% | |
| TTGAGCCTAAGATTAGTATT+TGG | + | Chr1:86313120-86313139 | MsG0180005057.01.T01:CDS | 30.0% | |
| ! | AACTAAGAAGGTATAGTTCA+CGG | - | Chr1:86311708-86311727 | None:intergenic | 30.0% |
| ! | AGGGATTACTTGATGATAAA+TGG | + | Chr1:86313047-86313066 | MsG0180005057.01.T01:CDS | 30.0% |
| ! | CATGTTAATGAACTTGTTCA+AGG | + | Chr1:86311857-86311876 | MsG0180005057.01.T01:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | + | Chr1:86313050-86313069 | MsG0180005057.01.T01:CDS | 30.0% |
| !! | AACTTGAGTTGAATCAATTC+GGG | + | Chr1:86311981-86312000 | MsG0180005057.01.T01:CDS | 30.0% |
| !! | CAACTTGAGTTGAATCAATT+CGG | + | Chr1:86311980-86311999 | MsG0180005057.01.T01:CDS | 30.0% |
| !! | GGTGTTTATATTTTAAGTGC+TGG | + | Chr1:86312754-86312773 | MsG0180005057.01.T01:intron | 30.0% |
| !! | TGAAATTGGTTCGAAATTGA+GGG | + | Chr1:86312141-86312160 | MsG0180005057.01.T01:CDS | 30.0% |
| AAACAACTACACAGCAGTAA+GGG | + | Chr1:86313028-86313047 | MsG0180005057.01.T01:CDS | 35.0% | |
| ACTCATAGCTTGAACTAAGA+AGG | - | Chr1:86311720-86311739 | None:intergenic | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | + | Chr1:86312845-86312864 | MsG0180005057.01.T01:CDS | 35.0% | |
| ATCATGGGGTGAAATAAGTT+TGG | - | Chr1:86311825-86311844 | None:intergenic | 35.0% | |
| ATTAGTATTTGGACTAACGG+TGG | + | Chr1:86313131-86313150 | MsG0180005057.01.T01:CDS | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | + | Chr1:86312015-86312034 | MsG0180005057.01.T01:CDS | 35.0% | |
| CTTGTTCAAGGAATCATTGA+AGG | + | Chr1:86311869-86311888 | MsG0180005057.01.T01:CDS | 35.0% | |
| GATTGCTAAAATAAATGCCG+AGG | + | Chr1:86313085-86313104 | MsG0180005057.01.T01:CDS | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | + | Chr1:86312127-86312146 | MsG0180005057.01.T01:CDS | 35.0% | |
| GCTATACGCAAAGAAAAAAG+AGG | + | Chr1:86312938-86312957 | MsG0180005057.01.T01:CDS | 35.0% | |
| TAAGTTTGGCGTATTTGAGT+AGG | - | Chr1:86311811-86311830 | None:intergenic | 35.0% | |
| TAGTGTTCAGTATGAAACCA+CGG | + | Chr1:86312486-86312505 | MsG0180005057.01.T01:CDS | 35.0% | |
| TCAGAATATCTTGCGATAAC+TGG | + | Chr1:86311602-86311621 | MsG0180005057.01.T01:CDS | 35.0% | |
| ! | ACTAAGAAGGTATAGTTCAC+GGG | - | Chr1:86311707-86311726 | None:intergenic | 35.0% |
| ! | ATGATTGGAGTGTCTATCAT+GGG | - | Chr1:86311840-86311859 | None:intergenic | 35.0% |
| ! | TCAAGAGCTTTTGTCAGATA+AGG | - | Chr1:86313288-86313307 | None:intergenic | 35.0% |
| !! | AGTTTTTGAGAATCAGAGAG+AGG | + | Chr1:86312276-86312295 | MsG0180005057.01.T01:CDS | 35.0% |
| !! | GGAATAATTGAAGGTGCTAT+GGG | + | Chr1:86313167-86313186 | MsG0180005057.01.T01:CDS | 35.0% |
| !! | GTGAAATTGGTTCGAAATTG+AGG | + | Chr1:86312140-86312159 | MsG0180005057.01.T01:CDS | 35.0% |
| !! | TTAAGTGCTGGTTGAAATTC+TGG | + | Chr1:86312766-86312785 | MsG0180005057.01.T01:intron | 35.0% |
| AGAAGCAGGGAATTAAAGTG+AGG | + | Chr1:86312242-86312261 | MsG0180005057.01.T01:CDS | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | + | Chr1:86313005-86313024 | MsG0180005057.01.T01:CDS | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | + | Chr1:86313185-86313204 | MsG0180005057.01.T01:CDS | 40.0% | |
| CAAAGAAAAAAGAGGCAGAG+GGG | + | Chr1:86312946-86312965 | MsG0180005057.01.T01:CDS | 40.0% | |
| CACGAGTATTTCTCGTATCT+GGG | + | Chr1:86312052-86312071 | MsG0180005057.01.T01:CDS | 40.0% | |
| GAAAATTGATGCAGAGACGA+AGG | + | Chr1:86312189-86312208 | MsG0180005057.01.T01:CDS | 40.0% | |
| GAAACAACTACACAGCAGTA+AGG | + | Chr1:86313027-86313046 | MsG0180005057.01.T01:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+GGG | + | Chr1:86312945-86312964 | MsG0180005057.01.T01:CDS | 40.0% | |
| GTTGAAATTCTGGATGCTGT+AGG | + | Chr1:86312776-86312795 | MsG0180005057.01.T01:intron | 40.0% | |
| TATCTTGCGATAACTGGTGT+AGG | + | Chr1:86311608-86311627 | MsG0180005057.01.T01:CDS | 40.0% | |
| TCACGAGTATTTCTCGTATC+TGG | + | Chr1:86312051-86312070 | MsG0180005057.01.T01:CDS | 40.0% | |
| TCATGGACAGTCTTAAACAG+AGG | - | Chr1:86313230-86313249 | None:intergenic | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | + | Chr1:86312018-86312037 | MsG0180005057.01.T01:CDS | 40.0% | |
| TTACCCTGGTCAAAAATGCA+CGG | + | Chr1:86311667-86311686 | MsG0180005057.01.T01:CDS | 40.0% | |
| TTGCTTGCGAGCATAAAATG+TGG | - | Chr1:86312904-86312923 | None:intergenic | 40.0% | |
| ! | AAGAAAGCATGGATTTACCC+TGG | + | Chr1:86311653-86311672 | MsG0180005057.01.T01:CDS | 40.0% |
| ! | AATGGTGGGGGAATAATTGA+AGG | + | Chr1:86313158-86313177 | MsG0180005057.01.T01:CDS | 40.0% |
| ! | ATTCTGATGCTTTTGCTACC+CGG | - | Chr1:86311589-86311608 | None:intergenic | 40.0% |
| ! | CATGATTGGAGTGTCTATCA+TGG | - | Chr1:86311841-86311860 | None:intergenic | 40.0% |
| ! | GAGAACGAAAGGGAGTTTTT+CGG | - | Chr1:86311744-86311763 | None:intergenic | 40.0% |
| ! | TGATTGGAGTGTCTATCATG+GGG | - | Chr1:86311839-86311858 | None:intergenic | 40.0% |
| !! | ATTGGTTCGAAATTGAGGGA+AGG | + | Chr1:86312145-86312164 | MsG0180005057.01.T01:CDS | 40.0% |
| !! | GGGAATAATTGAAGGTGCTA+TGG | + | Chr1:86313166-86313185 | MsG0180005057.01.T01:CDS | 40.0% |
| AAGACTGTCCATGAGCAAAC+TGG | + | Chr1:86313236-86313255 | MsG0180005057.01.T01:CDS | 45.0% | |
| CGCAAAGAAAAAAGAGGCAG+AGG | + | Chr1:86312944-86312963 | MsG0180005057.01.T01:CDS | 45.0% | |
| CTAAGGGAAGCTGAGTTACA+AGG | + | Chr1:86312397-86312416 | MsG0180005057.01.T01:CDS | 45.0% | |
| CTTTCATGATCGTCAACACG+AGG | - | Chr1:86311788-86311807 | None:intergenic | 45.0% | |
| GAAGGTTATTGCGATGCAGA+GGG | + | Chr1:86312207-86312226 | MsG0180005057.01.T01:CDS | 45.0% | |
| GAGACACTTGGAAATGCTCA+AGG | + | Chr1:86312972-86312991 | MsG0180005057.01.T01:CDS | 45.0% | |
| GTAGGTACAAGAGGCTAACT+GGG | + | Chr1:86312794-86312813 | MsG0180005057.01.T01:intron | 45.0% | |
| GTGGCAGAAGCTAAGATGAA+AGG | + | Chr1:86312118-86312137 | MsG0180005057.01.T01:CDS | 45.0% | |
| TACGAGAAATACTCGTGACC+AGG | - | Chr1:86312049-86312068 | None:intergenic | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | + | Chr1:86312851-86312870 | MsG0180005057.01.T01:CDS | 45.0% | |
| TGGACAGTCTTAAACAGAGG+TGG | - | Chr1:86313227-86313246 | None:intergenic | 45.0% | |
| TGGACTAACGGTGGTGATAA+TGG | + | Chr1:86313140-86313159 | MsG0180005057.01.T01:CDS | 45.0% | |
| TGTAGGTACAAGAGGCTAAC+TGG | + | Chr1:86312793-86312812 | MsG0180005057.01.T01:intron | 45.0% | |
| ! | AAGACCGTGCATTTTTGACC+AGG | - | Chr1:86311674-86311693 | None:intergenic | 45.0% |
| ! | AGACCGTGCATTTTTGACCA+GGG | - | Chr1:86311673-86311692 | None:intergenic | 45.0% |
| ! | ATAGTTGCATGGACTAACCG+TGG | - | Chr1:86312506-86312525 | None:intergenic | 45.0% |
| !! | ACTAACGGTGGTGATAATGG+TGG | + | Chr1:86313143-86313162 | MsG0180005057.01.T01:CDS | 45.0% |
| !! | CTAACGGTGGTGATAATGGT+GGG | + | Chr1:86313144-86313163 | MsG0180005057.01.T01:CDS | 45.0% |
| !! | TAACGGTGGTGATAATGGTG+GGG | + | Chr1:86313145-86313164 | MsG0180005057.01.T01:CDS | 45.0% |
| ACGAGGACCGATAGTGAAGA+CGG | - | Chr1:86311771-86311790 | None:intergenic | 50.0% | |
| AGGTATAGTTCACGGGTGAG+AGG | - | Chr1:86311700-86311719 | None:intergenic | 50.0% | |
| ATAAATGCCGAGGCAGTACG+CGG | + | Chr1:86313095-86313114 | MsG0180005057.01.T01:CDS | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | + | Chr1:86313260-86313279 | MsG0180005057.01.T01:CDS | 50.0% | |
| CGAAGGTTATTGCGATGCAG+AGG | + | Chr1:86312206-86312225 | MsG0180005057.01.T01:CDS | 50.0% | |
| CTGGATGCTGTAGGTACAAG+AGG | + | Chr1:86312785-86312804 | MsG0180005057.01.T01:intron | 50.0% | |
| GAAAACCTCCTCCATGGTCA+TGG | - | Chr1:86311918-86311937 | None:intergenic | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | + | Chr1:86312099-86312118 | MsG0180005057.01.T01:CDS | 50.0% | |
| GATAAGGATCCCATCCAAGC+AGG | - | Chr1:86313272-86313291 | None:intergenic | 50.0% | |
| GCTGGTGAAAGTGAGAAGCA+GGG | + | Chr1:86312229-86312248 | MsG0180005057.01.T01:CDS | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | + | Chr1:86312090-86312109 | MsG0180005057.01.T01:CDS | 50.0% | |
| TCTAGCTGCTTCCATGACCA+TGG | + | Chr1:86311904-86311923 | MsG0180005057.01.T01:CDS | 50.0% | |
| TGAGAATCAGAGAGAGGCTG+AGG | + | Chr1:86312282-86312301 | MsG0180005057.01.T01:CDS | 50.0% | |
| TGCTGAGGCTAATTCTGCGT+TGG | + | Chr1:86312306-86312325 | MsG0180005057.01.T01:CDS | 50.0% | |
| TGGAAGCAGCGAATCAAGCT+AGG | + | Chr1:86312089-86312108 | MsG0180005057.01.T01:CDS | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | + | Chr1:86312028-86312047 | MsG0180005057.01.T01:CDS | 50.0% |
| ! | ACCATGGAGGAGGTTTTCAG+AGG | + | Chr1:86311920-86311939 | MsG0180005057.01.T01:CDS | 50.0% |
| ! | GCAACATGCCAGTTTGCTCA+TGG | - | Chr1:86313247-86313266 | None:intergenic | 50.0% |
| ! | GGCAGAAGCGCAAAAAGCAT+TGG | + | Chr1:86312872-86312891 | MsG0180005057.01.T01:CDS | 50.0% |
| ! | TCCTCTGAAAACCTCCTCCA+TGG | - | Chr1:86311924-86311943 | None:intergenic | 50.0% |
| ! | TCTGGGACAAAAGACGCAGA+TGG | + | Chr1:86312069-86312088 | MsG0180005057.01.T01:CDS | 50.0% |
| ! | TTCTGCGTTGGCCAAGAAGA+AGG | + | Chr1:86312318-86312337 | MsG0180005057.01.T01:CDS | 50.0% |
| !! | AACGGTGGTGATAATGGTGG+GGG | + | Chr1:86313146-86313165 | MsG0180005057.01.T01:CDS | 50.0% |
| !! | GAAGAAGGCTGTGGCTCTAA+GGG | + | Chr1:86312381-86312400 | MsG0180005057.01.T01:CDS | 50.0% |
| AAGACGGCAGGGAGAACGAA+AGG | - | Chr1:86311755-86311774 | None:intergenic | 55.0% | |
| AAGGATCCCATCCAAGCAGG+AGG | - | Chr1:86313269-86313288 | None:intergenic | 55.0% | |
| AGACGGCAGGGAGAACGAAA+GGG | - | Chr1:86311754-86311773 | None:intergenic | 55.0% | |
| AGCTGCTTCCATGACCATGG+AGG | + | Chr1:86311907-86311926 | MsG0180005057.01.T01:CDS | 55.0% | |
| AGTTGAGGCGAAGAAGGCTG+TGG | + | Chr1:86312372-86312391 | MsG0180005057.01.T01:CDS | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | + | Chr1:86313259-86313278 | MsG0180005057.01.T01:CDS | 55.0% | |
| CTCCCTGCCGTCTTCACTAT+CGG | + | Chr1:86311761-86311780 | MsG0180005057.01.T01:CDS | 55.0% | |
| GACCGATAGTGAAGACGGCA+GGG | - | Chr1:86311766-86311785 | None:intergenic | 55.0% | |
| GCAGAGGGGATTGAGACACT+TGG | + | Chr1:86312960-86312979 | MsG0180005057.01.T01:CDS | 55.0% | |
| GGAAGCTGAGTTACAAGGCG+AGG | + | Chr1:86312402-86312421 | MsG0180005057.01.T01:CDS | 55.0% | |
| GGCTGAAGTTGAGGCGAAGA+AGG | + | Chr1:86312366-86312385 | MsG0180005057.01.T01:CDS | 55.0% | |
| GGCTGGTGAAAGTGAGAAGC+AGG | + | Chr1:86312228-86312247 | MsG0180005057.01.T01:CDS | 55.0% | |
| GTTATTGCGATGCAGAGGGC+TGG | + | Chr1:86312211-86312230 | MsG0180005057.01.T01:CDS | 55.0% | |
| TGCTTCCATGACCATGGAGG+AGG | + | Chr1:86311910-86311929 | MsG0180005057.01.T01:CDS | 55.0% | |
| ! | CGAAGAAGGCTGTGGCTCTA+AGG | + | Chr1:86312380-86312399 | MsG0180005057.01.T01:CDS | 55.0% |
| ! | TGCGTTGGCCAAGAAGAAGG+CGG | + | Chr1:86312321-86312340 | MsG0180005057.01.T01:CDS | 55.0% |
| CTCAAGTCCGCGTACTGCCT+CGG | - | Chr1:86313105-86313124 | None:intergenic | 60.0% | |
| CTGGCATGTTGCCTCCTGCT+TGG | + | Chr1:86313255-86313274 | MsG0180005057.01.T01:CDS | 60.0% | |
| GAGAGAGGCTGAGGTTGCTG+AGG | + | Chr1:86312291-86312310 | MsG0180005057.01.T01:CDS | 60.0% | |
| GGACCGATAGTGAAGACGGC+AGG | - | Chr1:86311767-86311786 | None:intergenic | 60.0% | |
| GGCTCAGGTGGCTGAAGTTG+AGG | + | Chr1:86312357-86312376 | MsG0180005057.01.T01:CDS | 60.0% | |
| GGTCCAAGCCGCCTTCTTCT+TGG | - | Chr1:86312332-86312351 | None:intergenic | 60.0% | |
| TGGCCAAGAAGAAGGCGGCT+TGG | + | Chr1:86312326-86312345 | MsG0180005057.01.T01:CDS | 60.0% | |
| ! | GAAGAAGGCGGCTTGGACCA+AGG | + | Chr1:86312333-86312352 | MsG0180005057.01.T01:CDS | 60.0% |
| TTCAGCCACCTGAGCCGCCT+TGG | - | Chr1:86312353-86312372 | None:intergenic | 65.0% | |
| TTGGACCAAGGCGGCTCAGG+TGG | + | Chr1:86312345-86312364 | MsG0180005057.01.T01:CDS | 65.0% | |
| ! | GAAGGCGGCTTGGACCAAGG+CGG | + | Chr1:86312336-86312355 | MsG0180005057.01.T01:CDS | 65.0% |
| GGCTTGGACCAAGGCGGCTC+AGG | + | Chr1:86312342-86312361 | MsG0180005057.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 86311581 | 86313307 | 86311581 | ID=MsG0180005057.01;Name=MsG0180005057.01 |
| Chr1 | mRNA | 86311581 | 86313307 | 86311581 | ID=MsG0180005057.01.T01;Parent=MsG0180005057.01;Name=MsG0180005057.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|2|0|478 |
| Chr1 | exon | 86311581 | 86312507 | 86311581 | ID=MsG0180005057.01.T01:exon:28392;Parent=MsG0180005057.01.T01 |
| Chr1 | exon | 86312798 | 86313307 | 86312798 | ID=MsG0180005057.01.T01:exon:28393;Parent=MsG0180005057.01.T01 |
| Chr1 | CDS | 86311581 | 86312507 | 86311581 | ID=MsG0180005057.01.T01:cds;Parent=MsG0180005057.01.T01 |
| Chr1 | CDS | 86312798 | 86313307 | 86312798 | ID=MsG0180005057.01.T01:cds;Parent=MsG0180005057.01.T01 |
| Gene Sequence |
| Protein sequence |
