Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017386.01.T01 | XP_003603333.2 | 99.306 | 432 | 3 | 0 | 1 | 432 | 1 | 432 | 0 | 861 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017386.01.T01 | D2XNR1 | 99.306 | 432 | 3 | 0 | 1 | 432 | 1 | 432 | 0 | 861 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048345.01 | MsG0380017386.01 | 0.819928 | 8.973751e-53 | 7.001009e-50 |
| MsG0080048347.01 | MsG0380017386.01 | 0.814276 | 1.673420e-51 | 1.117932e-48 |
| MsG0080048352.01 | MsG0380017386.01 | 0.824765 | 6.758449e-54 | 6.043655e-51 |
| MsG0080048967.01 | MsG0380017386.01 | 0.804399 | 2.201340e-49 | 1.133836e-46 |
| MsG0180000437.01 | MsG0380017386.01 | 0.820197 | 7.788822e-53 | 6.122244e-50 |
| MsG0180000930.01 | MsG0380017386.01 | 0.801236 | 9.901740e-49 | 4.704851e-46 |
| MsG0180001050.01 | MsG0380017386.01 | 0.867387 | 1.421067e-65 | 4.953344e-62 |
| MsG0180003240.01 | MsG0380017386.01 | 0.862601 | 4.515669e-64 | 1.329889e-60 |
| MsG0180004203.01 | MsG0380017386.01 | 0.833573 | 4.935160e-56 | 5.706249e-53 |
| MsG0180004562.01 | MsG0380017386.01 | 0.803087 | 4.119930e-49 | 2.051695e-46 |
| MsG0180005356.01 | MsG0380017386.01 | 0.801233 | 9.916055e-49 | 4.711271e-46 |
| MsG0180005357.01 | MsG0380017386.01 | 0.827165 | 1.818342e-54 | 1.741550e-51 |
| MsG0180005697.01 | MsG0380017386.01 | 0.801765 | 7.716035e-49 | 3.715342e-46 |
| MsG0280006433.01 | MsG0380017386.01 | 0.816363 | 5.747696e-52 | 4.064456e-49 |
| MsG0280011053.01 | MsG0380017386.01 | 0.822558 | 2.221627e-53 | 1.866022e-50 |
| MsG0280011349.01 | MsG0380017386.01 | 0.806636 | 7.470319e-50 | 4.075028e-47 |
| MsG0380011613.01 | MsG0380017386.01 | 0.865829 | 4.445061e-65 | 1.466317e-61 |
| MsG0380011975.01 | MsG0380017386.01 | 0.806362 | 8.533328e-50 | 4.622654e-47 |
| MsG0380016644.01 | MsG0380017386.01 | 0.822209 | 2.677712e-53 | 2.226612e-50 |
| MsG0380017386.01 | MsG0480018807.01 | 0.835337 | 1.779950e-56 | 2.170280e-53 |
| MsG0380017386.01 | MsG0480019105.01 | 0.804902 | 1.728151e-49 | 9.018717e-47 |
| MsG0380017386.01 | MsG0480020219.01 | 0.816242 | 6.117060e-52 | 4.311371e-49 |
| MsG0380017386.01 | MsG0480022179.01 | 0.821192 | 4.601626e-53 | 3.718369e-50 |
| MsG0380017386.01 | MsG0480022736.01 | 0.804441 | 2.156905e-49 | 1.112169e-46 |
| MsG0380017386.01 | MsG0480023819.01 | 0.807037 | 6.147002e-50 | 3.388269e-47 |
| MsG0380017386.01 | MsG0580025180.01 | 0.861583 | 9.267777e-64 | 2.635295e-60 |
| MsG0380017386.01 | MsG0580025683.01 | 0.876597 | 1.230055e-68 | 5.998549e-65 |
| MsG0380017386.01 | MsG0580025861.01 | 0.803258 | 3.798922e-49 | 1.900222e-46 |
| MsG0380017386.01 | MsG0580025870.01 | 0.812774 | 3.579412e-51 | 2.295956e-48 |
| MsG0380017386.01 | MsG0580029555.01 | 0.827357 | 1.636169e-54 | 1.576036e-51 |
| MsG0380017386.01 | MsG0680031429.01 | 0.893464 | 6.138068e-75 | 5.852903e-71 |
| MsG0380017386.01 | MsG0680034852.01 | 0.804554 | 2.042915e-49 | 1.056473e-46 |
| MsG0380017386.01 | MsG0680034919.01 | 0.829017 | 6.514133e-55 | 6.584484e-52 |
| MsG0380017386.01 | MsG0680035496.01 | 0.867284 | 1.532524e-65 | 5.321192e-62 |
| MsG0380017386.01 | MsG0680035779.01 | 0.801198 | 1.008326e-48 | 4.786304e-46 |
| MsG0380017386.01 | MsG0780039334.01 | 0.807362 | 5.245878e-50 | 2.916046e-47 |
| MsG0380017386.01 | MsG0780039968.01 | 0.842176 | 3.034538e-58 | 4.562915e-55 |
| MsG0380017386.01 | MsG0780040181.01 | 0.803738 | 3.020337e-49 | 1.529562e-46 |
| MsG0380017386.01 | MsG0780041556.01 | 0.832047 | 1.181211e-55 | 1.305190e-52 |
| MsG0380017386.01 | MsG0880042320.01 | 0.804340 | 2.264234e-49 | 1.164509e-46 |
| MsG0380017386.01 | MsG0880044669.01 | 0.810736 | 9.938743e-51 | 6.038896e-48 |
| MsG0380017386.01 | MsG0880046996.01 | 0.801939 | 7.107713e-49 | 3.437623e-46 |
| MsG0380017386.01 | MsG0880047747.01 | 0.805127 | 1.550842e-49 | 8.139700e-47 |
| MsG0280008117.01 | MsG0380017386.01 | 0.823720 | 1.189833e-53 | 1.032833e-50 |
| MsG0280008601.01 | MsG0380017386.01 | 0.833025 | 6.759571e-56 | 7.689187e-53 |
| MsG0280008747.01 | MsG0380017386.01 | 0.823286 | 1.503424e-53 | 1.288909e-50 |
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017386.01.T01 | MTR_3g106430 | 99.306 | 432 | 3 | 0 | 1 | 432 | 1 | 432 | 0.0 | 861 |
| MsG0380017386.01.T01 | MTR_3g106480 | 92.593 | 432 | 32 | 0 | 1 | 432 | 1 | 432 | 0.0 | 808 |
| MsG0380017386.01.T01 | MTR_3g106485 | 92.130 | 432 | 34 | 0 | 1 | 432 | 1 | 432 | 0.0 | 780 |
| MsG0380017386.01.T01 | MTR_3g106420 | 92.130 | 432 | 34 | 0 | 1 | 432 | 3 | 434 | 0.0 | 777 |
| MsG0380017386.01.T01 | MTR_1g083190 | 92.593 | 432 | 32 | 0 | 1 | 432 | 3 | 434 | 0.0 | 774 |
| MsG0380017386.01.T01 | MTR_1g073400 | 92.757 | 428 | 31 | 0 | 1 | 428 | 1 | 428 | 0.0 | 759 |
| MsG0380017386.01.T01 | MTR_1g071130 | 86.806 | 432 | 31 | 1 | 1 | 432 | 1 | 406 | 0.0 | 756 |
| MsG0380017386.01.T01 | MTR_1g115145 | 89.145 | 433 | 40 | 3 | 1 | 432 | 1 | 427 | 0.0 | 752 |
| MsG0380017386.01.T01 | MTR_3g106470 | 81.713 | 432 | 23 | 2 | 1 | 432 | 32 | 407 | 0.0 | 658 |
| MsG0380017386.01.T01 | MTR_8g063830 | 80.831 | 433 | 42 | 5 | 1 | 432 | 1 | 393 | 0.0 | 613 |
| MsG0380017386.01.T01 | MTR_3g065540 | 66.087 | 115 | 12 | 1 | 40 | 154 | 14 | 101 | 6.88e-42 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017386.01.T01 | AT5G25250 | 76.761 | 426 | 88 | 1 | 1 | 426 | 1 | 415 | 0.0 | 671 |
| MsG0380017386.01.T01 | AT5G25260 | 75.991 | 429 | 92 | 1 | 1 | 429 | 1 | 418 | 0.0 | 667 |
| MsG0380017386.01.T01 | AT5G64870 | 72.055 | 433 | 110 | 1 | 2 | 434 | 3 | 424 | 0.0 | 600 |
Find 106 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAATATTTCTCATATT+TGG | 0.034420 | 3:-95695830 | MsG0380017386.01.T01:CDS |
| GTGAGATTGGTTCGAAATTA+AGG | 0.141080 | 3:-95695741 | MsG0380017386.01.T01:CDS |
| CTGCTTCCATTTGTGTCTTT+TGG | 0.142752 | 3:+95695806 | None:intergenic |
| GGACTAATGGTGGTGATAAT+AGG | 0.198989 | 3:-95694225 | MsG0380017386.01.T01:CDS |
| GAGTTTAAACAAGAAGTATT+TGG | 0.198991 | 3:-95695931 | MsG0380017386.01.T01:CDS |
| ACTTCAAAGGTGTAATTTAC+AGG | 0.279006 | 3:+95696177 | None:intergenic |
| CATGAATATTTCTCATATTT+GGG | 0.285753 | 3:-95695829 | MsG0380017386.01.T01:CDS |
| GACTAATGGTGGTGATAATA+GGG | 0.286395 | 3:-95694224 | MsG0380017386.01.T01:CDS |
| AGGGATTACTTAATGATAAA+TGG | 0.291040 | 3:-95694319 | MsG0380017386.01.T01:CDS |
| CTGCTAAAGCCGTAGCTCTA+AGG | 0.291473 | 3:-95695501 | MsG0380017386.01.T01:CDS |
| AACAAGTTCCTTAACATGAT+TGG | 0.309318 | 3:+95696029 | None:intergenic |
| AGTTTAAACAAGAAGTATTT+GGG | 0.333241 | 3:-95695930 | MsG0380017386.01.T01:CDS |
| TCACAATACCTTGTGATAAC+TGG | 0.348490 | 3:-95696279 | MsG0380017386.01.T01:CDS |
| AGAGCTATATGCAAAGAAAA+AGG | 0.353826 | 3:-95694431 | MsG0380017386.01.T01:CDS |
| ATCATGAGGGGAAATTAGTT+TGG | 0.369987 | 3:+95696059 | None:intergenic |
| TGTAAATCAATAAACCGAAT+TGG | 0.376492 | 3:+95695887 | None:intergenic |
| AAGATTAGCATTTGGACTAA+TGG | 0.384982 | 3:-95694238 | MsG0380017386.01.T01:CDS |
| TATAGGTACAAGAAGCAAAC+TGG | 0.387176 | 3:-95694573 | MsG0380017386.01.T01:intron |
| TGAGATTGGTTCGAAATTAA+GGG | 0.391205 | 3:-95695740 | MsG0380017386.01.T01:CDS |
| TTAGTCCAAATGCTAATCTT+AGG | 0.400981 | 3:+95694241 | None:intergenic |
| CAACTTGAACTAAACCAATT+CGG | 0.410262 | 3:-95695901 | MsG0380017386.01.T01:CDS |
| GGCTGAGGCTAATTCTGAAT+TGG | 0.413100 | 3:-95695575 | MsG0380017386.01.T01:CDS |
| TTGAGCCTAAGATTAGCATT+TGG | 0.413132 | 3:-95694246 | MsG0380017386.01.T01:CDS |
| CGGTCCTCGTGTGGATGATA+AGG | 0.423356 | 3:-95696100 | MsG0380017386.01.T01:CDS |
| GAAGAAAGCGGCTTGGACTA+AGG | 0.439534 | 3:-95695548 | MsG0380017386.01.T01:CDS |
| TACCTTGTGATAACTGGAAT+CGG | 0.450729 | 3:-95696273 | MsG0380017386.01.T01:CDS |
| TAAACTCTCCAATCATGTTA+AGG | 0.453562 | 3:-95696037 | MsG0380017386.01.T01:CDS |
| AAGACAGCGGGGAGAACAAA+AGG | 0.470694 | 3:+95696129 | None:intergenic |
| CATGTTAAGGAACTTGTTCA+AGG | 0.472007 | 3:-95696024 | MsG0380017386.01.T01:CDS |
| GCTAAGATGAAAGGTGAGAT+TGG | 0.475874 | 3:-95695754 | MsG0380017386.01.T01:CDS |
| CTCCCCGCTGTCTTCACTAT+CGG | 0.478414 | 3:-95696120 | MsG0380017386.01.T01:CDS |
| GAAACAACTACACAGCTGTA+AGG | 0.490449 | 3:-95694339 | MsG0380017386.01.T01:CDS |
| CTCAAGTCCGCGTACCGCCT+CGG | 0.491620 | 3:+95694264 | None:intergenic |
| TTTGGGCCAAAAGACACAAA+TGG | 0.502028 | 3:-95695812 | MsG0380017386.01.T01:CDS |
| TGCTTCAATGACAATGGAAG+AGG | 0.507417 | 3:-95695971 | MsG0380017386.01.T01:CDS |
| CTCAAAATCAACCATGTACA+AGG | 0.508124 | 3:-95696313 | None:intergenic |
| CTAAGGGATGCTGAGTTACA+AGG | 0.508698 | 3:-95695484 | MsG0380017386.01.T01:CDS |
| GAGAGAAGCTGAAGTGGCTG+AGG | 0.509792 | 3:-95695590 | MsG0380017386.01.T01:CDS |
| CTTGTTCAAGGAATCATTGA+AGG | 0.510892 | 3:-95696012 | MsG0380017386.01.T01:CDS |
| TTGGACTAAGGCGGCTCAAG+TGG | 0.511474 | 3:-95695536 | MsG0380017386.01.T01:CDS |
| GAATCAGAGAGAAGCTGAAG+TGG | 0.511635 | 3:-95695596 | MsG0380017386.01.T01:CDS |
| GTTATTGCGATGCAGAGGGC+TGG | 0.513050 | 3:-95695670 | MsG0380017386.01.T01:CDS |
| GGACCGATAGTGAAGACAGC+GGG | 0.513792 | 3:+95696117 | None:intergenic |
| GGCTCAAGTGGCCGAAGTTG+AGG | 0.521394 | 3:-95695524 | MsG0380017386.01.T01:CDS |
| GCTGGAGAGGGCGACAAGGA+GGG | 0.521545 | 3:-95695652 | MsG0380017386.01.T01:CDS |
| GAAGACGGAGTAGGATTGAC+CGG | 0.524836 | 3:+95696209 | None:intergenic |
| GAGGGCTGGAGAGGGCGACA+AGG | 0.525696 | 3:-95695656 | MsG0380017386.01.T01:CDS |
| GTAACACTTGGGAATGCTCA+AGG | 0.527999 | 3:-95694394 | MsG0380017386.01.T01:CDS |
| TGCTAAAGCCGTAGCTCTAA+GGG | 0.534229 | 3:-95695500 | MsG0380017386.01.T01:CDS |
| GCAGAGGGAATTGTAACACT+TGG | 0.536418 | 3:-95694406 | MsG0380017386.01.T01:CDS |
| GGCTGGAGAGGGCGACAAGG+AGG | 0.536888 | 3:-95695653 | MsG0380017386.01.T01:CDS |
| GCTCATTGCTTGAACTTCAA+AGG | 0.540493 | 3:+95696164 | None:intergenic |
| GCGATGCAGAGGGCTGGAGA+GGG | 0.540981 | 3:-95695664 | MsG0380017386.01.T01:CDS |
| CTCAGCATCCCTTAGAGCTA+CGG | 0.547484 | 3:+95695492 | None:intergenic |
| TGCGATGCAGAGGGCTGGAG+AGG | 0.550159 | 3:-95695665 | MsG0380017386.01.T01:CDS |
| ATTGAACGCTAGCTTTGCTA+AGG | 0.553614 | 3:+95695407 | None:intergenic |
| TAAAGCTTGCAAAGAAAGCA+TGG | 0.553863 | 3:-95696239 | MsG0380017386.01.T01:CDS |
| TTAGTTTGGCGTATTTGAGA+AGG | 0.553890 | 3:+95696073 | None:intergenic |
| ACTAATGGTGGTGATAATAG+GGG | 0.554559 | 3:-95694223 | MsG0380017386.01.T01:CDS |
| TAAAGTGAGGACTGAAGTGA+AGG | 0.556664 | 3:-95695626 | MsG0380017386.01.T01:CDS |
| TGGCTAAGAAGAAAGCGGCT+TGG | 0.558254 | 3:-95695555 | MsG0380017386.01.T01:CDS |
| AAACAGTTAGTTGATGTGCC+AGG | 0.562976 | 3:-95695853 | MsG0380017386.01.T01:CDS |
| TTTGTATGAGAAGAAGGCAG+AGG | 0.567950 | 3:-95694515 | MsG0380017386.01.T01:CDS |
| GGAGCTGTACAAGAAACAAA+AGG | 0.571542 | 3:-95694551 | MsG0380017386.01.T01:CDS |
| TGGAAGCAGCGAATCAAGCA+AGG | 0.574713 | 3:-95695792 | MsG0380017386.01.T01:CDS |
| CTTCACTATCGGTCCTCGTG+TGG | 0.576587 | 3:-95696109 | MsG0380017386.01.T01:CDS |
| TGAGAGGTCGAAGACGGAGT+AGG | 0.579128 | 3:+95696200 | None:intergenic |
| TAACACTTGGGAATGCTCAA+GGG | 0.580610 | 3:-95694393 | MsG0380017386.01.T01:CDS |
| CCTCGCTGCTTCAATGACAA+TGG | 0.585018 | 3:-95695977 | MsG0380017386.01.T01:CDS |
| AAACAACTACACAGCTGTAA+GGG | 0.585417 | 3:-95694338 | MsG0380017386.01.T01:CDS |
| GGCTTTAGCAGCCTCAACTT+CGG | 0.588855 | 3:+95695513 | None:intergenic |
| ATTAGCATTTGGACTAATGG+TGG | 0.590526 | 3:-95694235 | MsG0380017386.01.T01:CDS |
| GATTGGAGAGTTTATCATGA+GGG | 0.592992 | 3:+95696046 | None:intergenic |
| AGTGCACTTCTGAATGCACT+TGG | 0.593608 | 3:-95694361 | MsG0380017386.01.T01:CDS |
| CAAAGGTTATTGCGATGCAG+AGG | 0.594400 | 3:-95695675 | MsG0380017386.01.T01:CDS |
| TTCCGATTCCAGTTATCACA+AGG | 0.603437 | 3:+95696271 | None:intergenic |
| GTATCAGAAGCTAAGATGAA+AGG | 0.607033 | 3:-95695763 | MsG0380017386.01.T01:CDS |
| AGTTACAAGGTGAAGTTGAG+AGG | 0.609202 | 3:-95695471 | MsG0380017386.01.T01:CDS |
| ATTGGAGAGTTTATCATGAG+GGG | 0.615848 | 3:+95696047 | None:intergenic |
| TGAATTGGCTAAGAAGAAAG+CGG | 0.615999 | 3:-95695560 | MsG0380017386.01.T01:CDS |
| CTAATGGTGGTGATAATAGG+GGG | 0.616435 | 3:-95694222 | MsG0380017386.01.T01:CDS |
| CAGAGGGAATTGTAACACTT+GGG | 0.616845 | 3:-95694405 | MsG0380017386.01.T01:CDS |
| ATAGGTACAAGAAGCAAACT+GGG | 0.617338 | 3:-95694572 | MsG0380017386.01.T01:intron |
| TACAGGTGAGAGGTCGAAGA+CGG | 0.620713 | 3:+95696194 | None:intergenic |
| AAAGGTTATTGCGATGCAGA+GGG | 0.625617 | 3:-95695674 | MsG0380017386.01.T01:CDS |
| GTACAAGAAACAAAAGGAGG+CGG | 0.626062 | 3:-95694545 | MsG0380017386.01.T01:CDS |
| AACACTTGGGAATGCTCAAG+GGG | 0.627744 | 3:-95694392 | MsG0380017386.01.T01:CDS |
| AGGTGTAATTTACAGGTGAG+AGG | 0.630097 | 3:+95696184 | None:intergenic |
| ATTGGTTCGAAATTAAGGGA+AGG | 0.631020 | 3:-95695736 | MsG0380017386.01.T01:CDS |
| GATTACTTAATGATAAATGG+TGG | 0.642965 | 3:-95694316 | MsG0380017386.01.T01:CDS |
| GATTGCTAAGATTAATGCCG+AGG | 0.643593 | 3:-95694281 | MsG0380017386.01.T01:CDS |
| TATGAGAAATATTCATGACC+TGG | 0.653740 | 3:+95695835 | None:intergenic |
| AAGACGGAGTAGGATTGACC+GGG | 0.657113 | 3:+95696210 | None:intergenic |
| TGCTAAGATTAATGCCGAGG+CGG | 0.661554 | 3:-95694278 | MsG0380017386.01.T01:CDS |
| TAGCGTTCAATATGAAACCA+AGG | 0.661629 | 3:-95695395 | MsG0380017386.01.T01:intron |
| AAGAAAGCATGGATTCTACC+CGG | 0.664070 | 3:-95696228 | MsG0380017386.01.T01:CDS |
| GGAAGCAGCGAATCAAGCAA+GGG | 0.666342 | 3:-95695791 | MsG0380017386.01.T01:CDS |
| TGATTGGAGAGTTTATCATG+AGG | 0.672105 | 3:+95696045 | None:intergenic |
| ATTAATGCCGAGGCGGTACG+CGG | 0.680968 | 3:-95694271 | MsG0380017386.01.T01:CDS |
| ACAAGGAGGGAATTAAAGTG+AGG | 0.693697 | 3:-95695639 | MsG0380017386.01.T01:CDS |
| CTTTCCTTATCATCCACACG+AGG | 0.701431 | 3:+95696096 | None:intergenic |
| CCATTGTCATTGAAGCAGCG+AGG | 0.707893 | 3:+95695977 | None:intergenic |
| GACCGATAGTGAAGACAGCG+GGG | 0.713902 | 3:+95696118 | None:intergenic |
| GCTGTACAAGAAACAAAAGG+AGG | 0.725038 | 3:-95694548 | MsG0380017386.01.T01:CDS |
| GAAAGCGGCTTGGACTAAGG+CGG | 0.747622 | 3:-95695545 | MsG0380017386.01.T01:CDS |
| AGGACCGATAGTGAAGACAG+CGG | 0.753084 | 3:+95696116 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATAGTTAATACCTATT+AGG | - | Chr3:95695843-95695862 | MsG0380017386.01.T01:CDS | 15.0% |
| !! | TAGGTATTAACTATTAATTT+AGG | + | Chr3:95695841-95695860 | None:intergenic | 15.0% |
| !!! | GTTGCATTTTTTTAAATAAT+TGG | - | Chr3:95695571-95695590 | MsG0380017386.01.T01:CDS | 15.0% |
| !! | CATGAATATTTCTCATATTT+GGG | - | Chr3:95694684-95694703 | MsG0380017386.01.T01:intron | 20.0% |
| !! | TCATGAATATTTCTCATATT+TGG | - | Chr3:95694683-95694702 | MsG0380017386.01.T01:intron | 20.0% |
| !!! | AGTTTAAACAAGAAGTATTT+GGG | - | Chr3:95694583-95694602 | MsG0380017386.01.T01:intron | 20.0% |
| !!! | TGATTATTGATTCTGTTATA+TGG | - | Chr3:95695538-95695557 | MsG0380017386.01.T01:CDS | 20.0% |
| ! | AATTCTCTATTAAGCTGTTA+TGG | + | Chr3:95695627-95695646 | None:intergenic | 25.0% |
| ! | AGGGATTACTTAATGATAAA+TGG | - | Chr3:95696194-95696213 | MsG0380017386.01.T01:CDS | 25.0% |
| ! | ATGCATTATACAATTACAAG+TGG | - | Chr3:95695795-95695814 | MsG0380017386.01.T01:CDS | 25.0% |
| ! | ATTTATTTACTAGGCCTAAT+AGG | + | Chr3:95695860-95695879 | None:intergenic | 25.0% |
| ! | GATTACTTAATGATAAATGG+TGG | - | Chr3:95696197-95696216 | MsG0380017386.01.T01:CDS | 25.0% |
| ! | TAGCAACAAGATTAATAGTT+TGG | - | Chr3:95695274-95695293 | MsG0380017386.01.T01:intron | 25.0% |
| ! | TCATTTGGTTAAACCTTAAA+AGG | + | Chr3:95695399-95695418 | None:intergenic | 25.0% |
| ! | TGTAAATCAATAAACCGAAT+TGG | + | Chr3:95694629-95694648 | None:intergenic | 25.0% |
| !!! | AGTTTTAAACTCTCCTTTTA+AGG | - | Chr3:95695383-95695402 | MsG0380017386.01.T01:intron | 25.0% |
| !!! | GAGTTTAAACAAGAAGTATT+TGG | - | Chr3:95694582-95694601 | MsG0380017386.01.T01:intron | 25.0% |
| !!! | TTTTTTCGTGATTGAAATTC+TGG | - | Chr3:95695913-95695932 | MsG0380017386.01.T01:CDS | 25.0% |
| AAAAATTGATGCAGAGACAA+AGG | - | Chr3:95694821-95694840 | MsG0380017386.01.T01:intron | 30.0% | |
| AACAAGTTCCTTAACATGAT+TGG | + | Chr3:95694487-95694506 | None:intergenic | 30.0% | |
| AAGATTAGCATTTGGACTAA+TGG | - | Chr3:95696275-95696294 | MsG0380017386.01.T01:CDS | 30.0% | |
| AGAGCTATATGCAAAGAAAA+AGG | - | Chr3:95696082-95696101 | MsG0380017386.01.T01:CDS | 30.0% | |
| ATTGAAATTCTGGATGGTAT+AGG | - | Chr3:95695923-95695942 | MsG0380017386.01.T01:CDS | 30.0% | |
| CAACTTGAACTAAACCAATT+CGG | - | Chr3:95694612-95694631 | MsG0380017386.01.T01:intron | 30.0% | |
| TAAACTCTCCAATCATGTTA+AGG | - | Chr3:95694476-95694495 | MsG0380017386.01.T01:CDS | 30.0% | |
| TACTATAATGAGATCACAGT+TGG | - | Chr3:95695722-95695741 | MsG0380017386.01.T01:CDS | 30.0% | |
| TATGAGAAATATTCATGACC+TGG | + | Chr3:95694681-95694700 | None:intergenic | 30.0% | |
| TTAGTCCAAATGCTAATCTT+AGG | + | Chr3:95696275-95696294 | None:intergenic | 30.0% | |
| ! | ACTTCAAAGGTGTAATTTAC+AGG | + | Chr3:95694339-95694358 | None:intergenic | 30.0% |
| ! | ATATTTTTCTATCGAGTAGC+GGG | + | Chr3:95695777-95695796 | None:intergenic | 30.0% |
| ! | CATATTTTTCTATCGAGTAG+CGG | + | Chr3:95695778-95695797 | None:intergenic | 30.0% |
| ! | TCAACACTATTTTACAACCT+TGG | - | Chr3:95695646-95695665 | MsG0380017386.01.T01:CDS | 30.0% |
| !! | TATTTTACAACCTTGGTGAT+TGG | - | Chr3:95695653-95695672 | MsG0380017386.01.T01:CDS | 30.0% |
| !! | TGAGATTGGTTCGAAATTAA+GGG | - | Chr3:95694773-95694792 | MsG0380017386.01.T01:intron | 30.0% |
| AAACAACTACACAGCTGTAA+GGG | - | Chr3:95696175-95696194 | MsG0380017386.01.T01:CDS | 35.0% | |
| ACTCATGATCAATGGACAAT+GGG | - | Chr3:95695424-95695443 | MsG0380017386.01.T01:CDS | 35.0% | |
| ATAGGTACAAGAAGCAAACT+GGG | - | Chr3:95695941-95695960 | MsG0380017386.01.T01:CDS | 35.0% | |
| ATCATGAGGGGAAATTAGTT+TGG | + | Chr3:95694457-95694476 | None:intergenic | 35.0% | |
| ATTAGCATTTGGACTAATGG+TGG | - | Chr3:95696278-95696297 | MsG0380017386.01.T01:CDS | 35.0% | |
| ATTGGAGAGTTTATCATGAG+GGG | + | Chr3:95694469-95694488 | None:intergenic | 35.0% | |
| CTTGTTCAAGGAATCATTGA+AGG | - | Chr3:95694501-95694520 | MsG0380017386.01.T01:CDS | 35.0% | |
| GATTGGAGAGTTTATCATGA+GGG | + | Chr3:95694470-95694489 | None:intergenic | 35.0% | |
| GCTATATGCAAAGAAAAAGG+AGG | - | Chr3:95696085-95696104 | MsG0380017386.01.T01:CDS | 35.0% | |
| GTATCAGAAGCTAAGATGAA+AGG | - | Chr3:95694750-95694769 | MsG0380017386.01.T01:intron | 35.0% | |
| TAAAGCTTGCAAAGAAAGCA+TGG | - | Chr3:95694274-95694293 | MsG0380017386.01.T01:CDS | 35.0% | |
| TACCTTGTGATAACTGGAAT+CGG | - | Chr3:95694240-95694259 | MsG0380017386.01.T01:CDS | 35.0% | |
| TAGCGTTCAATATGAAACCA+AGG | - | Chr3:95695118-95695137 | MsG0380017386.01.T01:intron | 35.0% | |
| TATAGGTACAAGAAGCAAAC+TGG | - | Chr3:95695940-95695959 | MsG0380017386.01.T01:CDS | 35.0% | |
| TCACAATACCTTGTGATAAC+TGG | - | Chr3:95694234-95694253 | MsG0380017386.01.T01:CDS | 35.0% | |
| TGAATTGGCTAAGAAGAAAG+CGG | - | Chr3:95694953-95694972 | MsG0380017386.01.T01:intron | 35.0% | |
| TGATTGGAGAGTTTATCATG+AGG | + | Chr3:95694471-95694490 | None:intergenic | 35.0% | |
| TGCATGTACTAAACTAACCT+TGG | + | Chr3:95695138-95695157 | None:intergenic | 35.0% | |
| TTCGTGATTGAAATTCTGGA+TGG | - | Chr3:95695917-95695936 | MsG0380017386.01.T01:CDS | 35.0% | |
| TTGAGCCTAAGATTAGCATT+TGG | - | Chr3:95696267-95696286 | MsG0380017386.01.T01:CDS | 35.0% | |
| TTGATTGATACCAATCACCA+AGG | + | Chr3:95695666-95695685 | None:intergenic | 35.0% | |
| ! | ACTAATGGTGGTGATAATAG+GGG | - | Chr3:95696290-95696309 | MsG0380017386.01.T01:CDS | 35.0% |
| ! | AGCGATTTTGTATGAGAAGA+AGG | - | Chr3:95695992-95696011 | MsG0380017386.01.T01:CDS | 35.0% |
| ! | CATGTTAAGGAACTTGTTCA+AGG | - | Chr3:95694489-95694508 | MsG0380017386.01.T01:CDS | 35.0% |
| ! | GACTAATGGTGGTGATAATA+GGG | - | Chr3:95696289-95696308 | MsG0380017386.01.T01:CDS | 35.0% |
| ! | TATTTTTCTATCGAGTAGCG+GGG | + | Chr3:95695776-95695795 | None:intergenic | 35.0% |
| ! | TTAGTTTGGCGTATTTGAGA+AGG | + | Chr3:95694443-95694462 | None:intergenic | 35.0% |
| !! | ATTGGTTCGAAATTAAGGGA+AGG | - | Chr3:95694777-95694796 | MsG0380017386.01.T01:intron | 35.0% |
| !! | GTGAGATTGGTTCGAAATTA+AGG | - | Chr3:95694772-95694791 | MsG0380017386.01.T01:intron | 35.0% |
| AAAGGTTATTGCGATGCAGA+GGG | - | Chr3:95694839-95694858 | MsG0380017386.01.T01:intron | 40.0% | |
| ACAAGGAGGGAATTAAAGTG+AGG | - | Chr3:95694874-95694893 | MsG0380017386.01.T01:intron | 40.0% | |
| AGGTGTAATTTACAGGTGAG+AGG | + | Chr3:95694332-95694351 | None:intergenic | 40.0% | |
| AGTTACAAGGTGAAGTTGAG+AGG | - | Chr3:95695042-95695061 | MsG0380017386.01.T01:intron | 40.0% | |
| CACTCATGATCAATGGACAA+TGG | - | Chr3:95695423-95695442 | MsG0380017386.01.T01:CDS | 40.0% | |
| CAGAGGGAATTGTAACACTT+GGG | - | Chr3:95696108-95696127 | MsG0380017386.01.T01:CDS | 40.0% | |
| GAAACAACTACACAGCTGTA+AGG | - | Chr3:95696174-95696193 | MsG0380017386.01.T01:CDS | 40.0% | |
| GATCATGAGTGTGACTCATT+TGG | + | Chr3:95695414-95695433 | None:intergenic | 40.0% | |
| GATTGCTAAGATTAATGCCG+AGG | - | Chr3:95696232-95696251 | MsG0380017386.01.T01:CDS | 40.0% | |
| GCTAAGATGAAAGGTGAGAT+TGG | - | Chr3:95694759-95694778 | MsG0380017386.01.T01:intron | 40.0% | |
| GCTCATTGCTTGAACTTCAA+AGG | + | Chr3:95694352-95694371 | None:intergenic | 40.0% | |
| GCTGTACAAGAAACAAAAGG+AGG | - | Chr3:95695965-95695984 | MsG0380017386.01.T01:CDS | 40.0% | |
| GGAGCTGTACAAGAAACAAA+AGG | - | Chr3:95695962-95695981 | MsG0380017386.01.T01:CDS | 40.0% | |
| GTACAAGAAACAAAAGGAGG+CGG | - | Chr3:95695968-95695987 | MsG0380017386.01.T01:CDS | 40.0% | |
| TAAAGTGAGGACTGAAGTGA+AGG | - | Chr3:95694887-95694906 | MsG0380017386.01.T01:intron | 40.0% | |
| TAACACTTGGGAATGCTCAA+GGG | - | Chr3:95696120-95696139 | MsG0380017386.01.T01:CDS | 40.0% | |
| TGAGTCACACTCATGATCAA+TGG | - | Chr3:95695416-95695435 | MsG0380017386.01.T01:CDS | 40.0% | |
| TGCTTCAATGACAATGGAAG+AGG | - | Chr3:95694542-95694561 | MsG0380017386.01.T01:CDS | 40.0% | |
| TTCCGATTCCAGTTATCACA+AGG | + | Chr3:95694245-95694264 | None:intergenic | 40.0% | |
| TTTGGGCCAAAAGACACAAA+TGG | - | Chr3:95694701-95694720 | MsG0380017386.01.T01:intron | 40.0% | |
| TTTGTATGAGAAGAAGGCAG+AGG | - | Chr3:95695998-95696017 | MsG0380017386.01.T01:CDS | 40.0% | |
| ! | AAACAGTTAGTTGATGTGCC+AGG | - | Chr3:95694660-95694679 | MsG0380017386.01.T01:intron | 40.0% |
| ! | AAGAAAGCATGGATTCTACC+CGG | - | Chr3:95694285-95694304 | MsG0380017386.01.T01:CDS | 40.0% |
| ! | ACAATGGAAGAGGTTTTCAG+AGG | - | Chr3:95694552-95694571 | MsG0380017386.01.T01:CDS | 40.0% |
| ! | ATTTTTCTATCGAGTAGCGG+GGG | + | Chr3:95695775-95695794 | None:intergenic | 40.0% |
| ! | CTAATGGTGGTGATAATAGG+GGG | - | Chr3:95696291-95696310 | MsG0380017386.01.T01:CDS | 40.0% |
| ! | CTGCTTCCATTTGTGTCTTT+TGG | + | Chr3:95694710-95694729 | None:intergenic | 40.0% |
| ! | GGACTAATGGTGGTGATAAT+AGG | - | Chr3:95696288-95696307 | MsG0380017386.01.T01:CDS | 40.0% |
| !! | ATTGAACGCTAGCTTTGCTA+AGG | + | Chr3:95695109-95695128 | None:intergenic | 40.0% |
| AACACTTGGGAATGCTCAAG+GGG | - | Chr3:95696121-95696140 | MsG0380017386.01.T01:CDS | 45.0% | |
| AGTGCACTTCTGAATGCACT+TGG | - | Chr3:95696152-95696171 | MsG0380017386.01.T01:CDS | 45.0% | |
| CAAAGGTTATTGCGATGCAG+AGG | - | Chr3:95694838-95694857 | MsG0380017386.01.T01:intron | 45.0% | |
| CTAAGGGATGCTGAGTTACA+AGG | - | Chr3:95695029-95695048 | MsG0380017386.01.T01:intron | 45.0% | |
| CTTTCCTTATCATCCACACG+AGG | + | Chr3:95694420-95694439 | None:intergenic | 45.0% | |
| GAATCAGAGAGAAGCTGAAG+TGG | - | Chr3:95694917-95694936 | MsG0380017386.01.T01:intron | 45.0% | |
| GCAAAGAAAAAGGAGGCAGA+GGG | - | Chr3:95696092-95696111 | MsG0380017386.01.T01:CDS | 45.0% | |
| GCAGAGGGAATTGTAACACT+TGG | - | Chr3:95696107-95696126 | MsG0380017386.01.T01:CDS | 45.0% | |
| GGCTGAGGCTAATTCTGAAT+TGG | - | Chr3:95694938-95694957 | MsG0380017386.01.T01:intron | 45.0% | |
| GTAACACTTGGGAATGCTCA+AGG | - | Chr3:95696119-95696138 | MsG0380017386.01.T01:CDS | 45.0% | |
| TGCAAAGAAAAAGGAGGCAG+AGG | - | Chr3:95696091-95696110 | MsG0380017386.01.T01:CDS | 45.0% | |
| TGCTAAGATTAATGCCGAGG+CGG | - | Chr3:95696235-95696254 | MsG0380017386.01.T01:CDS | 45.0% | |
| !! | TGCTAAAGCCGTAGCTCTAA+GGG | - | Chr3:95695013-95695032 | MsG0380017386.01.T01:intron | 45.0% |
| !! | ATATATATAATTTATTTACT+AGG | + | Chr3:95695869-95695888 | None:intergenic | 5.0% |
| !!! | ATAAAAGATTAATATTTTTA+AGG | - | Chr3:95695449-95695468 | MsG0380017386.01.T01:CDS | 5.0% |
| AAGACAGCGGGGAGAACAAA+AGG | + | Chr3:95694387-95694406 | None:intergenic | 50.0% | |
| AAGACGGAGTAGGATTGACC+GGG | + | Chr3:95694306-95694325 | None:intergenic | 50.0% | |
| AGGACCGATAGTGAAGACAG+CGG | + | Chr3:95694400-95694419 | None:intergenic | 50.0% | |
| CCATTGTCATTGAAGCAGCG+AGG | + | Chr3:95694539-95694558 | None:intergenic | 50.0% | |
| CCTCGCTGCTTCAATGACAA+TGG | - | Chr3:95694536-95694555 | MsG0380017386.01.T01:CDS | 50.0% | |
| CTCAGCATCCCTTAGAGCTA+CGG | + | Chr3:95695024-95695043 | None:intergenic | 50.0% | |
| GAAGACGGAGTAGGATTGAC+CGG | + | Chr3:95694307-95694326 | None:intergenic | 50.0% | |
| GGAAGCAGCGAATCAAGCAA+GGG | - | Chr3:95694722-95694741 | MsG0380017386.01.T01:intron | 50.0% | |
| TACAGGTGAGAGGTCGAAGA+CGG | + | Chr3:95694322-95694341 | None:intergenic | 50.0% | |
| TGGAAGCAGCGAATCAAGCA+AGG | - | Chr3:95694721-95694740 | MsG0380017386.01.T01:intron | 50.0% | |
| TGGCTAAGAAGAAAGCGGCT+TGG | - | Chr3:95694958-95694977 | MsG0380017386.01.T01:intron | 50.0% | |
| ! | CTGCTAAAGCCGTAGCTCTA+AGG | - | Chr3:95695012-95695031 | MsG0380017386.01.T01:intron | 50.0% |
| ! | GAAGAAAGCGGCTTGGACTA+AGG | - | Chr3:95694965-95694984 | MsG0380017386.01.T01:intron | 50.0% |
| ! | GGCTTTAGCAGCCTCAACTT+CGG | + | Chr3:95695003-95695022 | None:intergenic | 50.0% |
| ! | TAGCGGGGGAGCTAACTTTT+GGG | + | Chr3:95695761-95695780 | None:intergenic | 50.0% |
| ATTAATGCCGAGGCGGTACG+CGG | - | Chr3:95696242-95696261 | MsG0380017386.01.T01:CDS | 55.0% | |
| CGGTCCTCGTGTGGATGATA+AGG | - | Chr3:95694413-95694432 | MsG0380017386.01.T01:CDS | 55.0% | |
| CTCCCCGCTGTCTTCACTAT+CGG | - | Chr3:95694393-95694412 | MsG0380017386.01.T01:CDS | 55.0% | |
| CTTCACTATCGGTCCTCGTG+TGG | - | Chr3:95694404-95694423 | MsG0380017386.01.T01:CDS | 55.0% | |
| GACCGATAGTGAAGACAGCG+GGG | + | Chr3:95694398-95694417 | None:intergenic | 55.0% | |
| GAGAGAAGCTGAAGTGGCTG+AGG | - | Chr3:95694923-95694942 | MsG0380017386.01.T01:intron | 55.0% | |
| GGACCGATAGTGAAGACAGC+GGG | + | Chr3:95694399-95694418 | None:intergenic | 55.0% | |
| GTTATTGCGATGCAGAGGGC+TGG | - | Chr3:95694843-95694862 | MsG0380017386.01.T01:intron | 55.0% | |
| TGAGAGGTCGAAGACGGAGT+AGG | + | Chr3:95694316-95694335 | None:intergenic | 55.0% | |
| TTGGACTAAGGCGGCTCAAG+TGG | - | Chr3:95694977-95694996 | MsG0380017386.01.T01:intron | 55.0% | |
| ! | GAAAGCGGCTTGGACTAAGG+CGG | - | Chr3:95694968-95694987 | MsG0380017386.01.T01:intron | 55.0% |
| !! | GTAGCGGGGGAGCTAACTTT+TGG | + | Chr3:95695762-95695781 | None:intergenic | 55.0% |
| GGCTCAAGTGGCCGAAGTTG+AGG | - | Chr3:95694989-95695008 | MsG0380017386.01.T01:intron | 60.0% | |
| CTCAAGTCCGCGTACCGCCT+CGG | + | Chr3:95696252-95696271 | None:intergenic | 65.0% | |
| GCGATGCAGAGGGCTGGAGA+GGG | - | Chr3:95694849-95694868 | MsG0380017386.01.T01:intron | 65.0% | |
| GCTGGAGAGGGCGACAAGGA+GGG | - | Chr3:95694861-95694880 | MsG0380017386.01.T01:intron | 65.0% | |
| TGCGATGCAGAGGGCTGGAG+AGG | - | Chr3:95694848-95694867 | MsG0380017386.01.T01:intron | 65.0% | |
| GAGGGCTGGAGAGGGCGACA+AGG | - | Chr3:95694857-95694876 | MsG0380017386.01.T01:intron | 70.0% | |
| GGCTGGAGAGGGCGACAAGG+AGG | - | Chr3:95694860-95694879 | MsG0380017386.01.T01:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 95694213 | 95696322 | 95694213 | ID=MsG0380017386.01;Name=MsG0380017386.01 |
| Chr3 | mRNA | 95694213 | 95696322 | 95694213 | ID=MsG0380017386.01.T01;Parent=MsG0380017386.01;Name=MsG0380017386.01.T01;_AED=0.47;_eAED=0.47;_QI=0|0|0|1|1|1|2|0|434 |
| Chr3 | exon | 95695396 | 95696322 | 95695396 | ID=MsG0380017386.01.T01:exon:13010;Parent=MsG0380017386.01.T01 |
| Chr3 | exon | 95694213 | 95694590 | 95694213 | ID=MsG0380017386.01.T01:exon:13009;Parent=MsG0380017386.01.T01 |
| Chr3 | CDS | 95695396 | 95696322 | 95695396 | ID=MsG0380017386.01.T01:cds;Parent=MsG0380017386.01.T01 |
| Chr3 | CDS | 95694213 | 95694590 | 95694213 | ID=MsG0380017386.01.T01:cds;Parent=MsG0380017386.01.T01 |
| Gene Sequence |
| Protein sequence |
