AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017388.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017388.01.T01 MTR_3g106480 89.770 479 4 3 1 435 1 478 0.0 844
MsG0380017388.01.T01 MTR_3g106485 84.760 479 24 5 1 435 1 474 0.0 767
MsG0380017388.01.T01 MTR_3g106420 82.463 479 39 3 1 435 3 480 0.0 755
MsG0380017388.01.T01 MTR_1g115145 80.922 477 45 5 1 435 1 473 0.0 739
MsG0380017388.01.T01 MTR_1g073400 81.420 479 40 4 1 435 1 474 0.0 726
MsG0380017388.01.T01 MTR_3g106430 82.636 478 34 5 1 434 1 473 0.0 723
MsG0380017388.01.T01 MTR_1g083190 80.376 479 41 4 1 435 3 472 0.0 720
MsG0380017388.01.T01 MTR_1g071130 76.827 479 37 5 1 435 1 449 0.0 717
MsG0380017388.01.T01 MTR_3g106470 78.431 459 36 4 1 434 32 452 0.0 671
MsG0380017388.01.T01 MTR_8g063830 81.050 438 53 6 1 421 1 425 0.0 628
MsG0380017388.01.T01 MTR_3g065540 58.974 78 5 1 40 117 14 64 1.50e-19 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017388.01.T01 AT5G25260 65.190 474 108 5 1 430 1 461 0.0 611
MsG0380017388.01.T01 AT5G25250 64.768 474 108 5 1 430 1 459 0.0 598
MsG0380017388.01.T01 AT5G64870 61.407 469 133 3 2 430 3 463 0.0 548

Find 114 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATGAATATTTCTCATATT+TGG 0.052081 3:-95709880 MsG0380017388.01.T01:CDS
TTGAGCCTAAGATTAGTATT+TGG 0.251063 3:-95708251 MsG0380017388.01.T01:CDS
CTGCTAAAGCCGTGGCTCTA+AGG 0.254538 3:-95709551 MsG0380017388.01.T01:CDS
CATGAATATTTCTCATATTT+GGG 0.273088 3:-95709879 MsG0380017388.01.T01:CDS
GGCTGGAGAAGGTGAGAAAC+AGG 0.294061 3:-95709703 MsG0380017388.01.T01:CDS
GCTAAGATGAAAGGTGAAAT+TGG 0.319472 3:-95709804 MsG0380017388.01.T01:CDS
ACTAATGGTGGTGATAATAA+TGG 0.334485 3:-95708228 MsG0380017388.01.T01:CDS
AACGAGTTCATTAACGTGAT+TGG 0.339850 3:+95710082 None:intergenic
CATGTTGCCTCCGGCTTGGA+TGG 0.343865 3:-95708112 MsG0380017388.01.T01:CDS
AGGGATTACTTGATGATAAA+TGG 0.347159 3:-95708324 MsG0380017388.01.T01:CDS
GTGAAATTGGTTCGAAATTG+AGG 0.356446 3:-95709791 MsG0380017388.01.T01:CDS
ATCATGAGGGGAAATTAGTT+TGG 0.360315 3:+95710112 None:intergenic
TCAGAATACCTTGTGATAAC+TGG 0.379855 3:-95710332 MsG0380017388.01.T01:CDS
TTAGTCCAAATACTAATCTT+AGG 0.384650 3:+95708246 None:intergenic
AAGATTAGTATTTGGACTAA+TGG 0.384982 3:-95708243 MsG0380017388.01.T01:CDS
AAGCTTTACATCGTCAATTC+CGG 0.391365 3:+95710307 None:intergenic
CTCCCTGCCGTCTTCACAAT+AGG 0.407375 3:-95710173 MsG0380017388.01.T01:CDS
AAATTAGTTTGGCATATTTG+AGG 0.439485 3:+95710123 None:intergenic
CACGTTAATGAACTCGTTCA+AGG 0.459703 3:-95710077 MsG0380017388.01.T01:CDS
AGCAATTCTGTATGAGAAGA+AGG 0.462456 3:-95708529 MsG0380017388.01.T01:CDS
CTAATGGTGGTGATAATAAT+GGG 0.463009 3:-95708227 MsG0380017388.01.T01:CDS
CAAACAATATCAACATGTAC+CGG 0.478513 3:-95710367 None:intergenic
TGAAATTGGTTCGAAATTGA+GGG 0.484739 3:-95709790 MsG0380017388.01.T01:CDS
GGGAATAACTGAAGGTGCCA+TGG 0.487818 3:-95708205 MsG0380017388.01.T01:CDS
CTCAAGTCCGCGTACCGCCT+CGG 0.491620 3:+95708269 None:intergenic
AAGACTGTCCATGAGCAAAC+AGG 0.492575 3:-95708135 MsG0380017388.01.T01:CDS
TGCTTCAATGACAATGGAAG+AGG 0.493478 3:-95710024 MsG0380017388.01.T01:intron
TGCTAAAGCCGTGGCTCTAA+GGG 0.495165 3:-95709550 MsG0380017388.01.T01:CDS
GGAACAACTACACAGCTGTA+AGG 0.502820 3:-95708344 MsG0380017388.01.T01:CDS
TGGAAGCAGCGAATCAAGCT+AGG 0.506083 3:-95709842 MsG0380017388.01.T01:CDS
GGACCTATTGTGAAGACGGC+AGG 0.507327 3:+95710170 None:intergenic
ATGTTGCCTCCGGCTTGGAT+GGG 0.512421 3:-95708111 MsG0380017388.01.T01:CDS
TTGGACAATGGCGGCTCAAG+TGG 0.512749 3:-95709586 MsG0380017388.01.T01:CDS
GTTATTGCGATGCAGAGGGC+TGG 0.513050 3:-95709720 MsG0380017388.01.T01:CDS
CAGGCATGTTGCCTCCGGCT+TGG 0.517134 3:-95708116 MsG0380017388.01.T01:CDS
GCAACATGCCTGTTTGCTCA+TGG 0.521020 3:+95708127 None:intergenic
AGCTTTAAGCTTCTCAGTAG+TGG 0.525292 3:+95709485 None:intergenic
AAGCAATTGGTGGATGTGCC+TGG 0.526695 3:-95709903 MsG0380017388.01.T01:CDS
GGCTCAAGTGGCTGAGCTTG+AGG 0.528141 3:-95709574 MsG0380017388.01.T01:CDS
GCAAACAGGCATGTTGCCTC+CGG 0.529165 3:-95708121 MsG0380017388.01.T01:CDS
ATTAGTATTTGGACTAATGG+TGG 0.532835 3:-95708240 MsG0380017388.01.T01:CDS
GGAATAACTGAAGGTGCCAT+GGG 0.534697 3:-95708204 MsG0380017388.01.T01:CDS
AGCAACTTCTTTCATACCCA+TGG 0.534773 3:+95708188 None:intergenic
AGTACACTTCTCAATGCACT+TGG 0.541119 3:-95708366 MsG0380017388.01.T01:CDS
CACCGTCTTCGACCTCTCAC+CGG 0.542934 3:-95710249 MsG0380017388.01.T01:CDS
ATTCAACACTAGCTTTGCTA+AGG 0.544556 3:+95709457 None:intergenic
TGAGAGGTCGAAGACGGTGC+AGG 0.545239 3:+95710253 None:intergenic
GCAGAGGGGATTGTGACACT+TGG 0.546780 3:-95708411 MsG0380017388.01.T01:CDS
ACTTCGAAGGTGTAATTCAC+CGG 0.552954 3:+95710230 None:intergenic
AAGACGGTGCAGGATTGACC+CGG 0.554154 3:+95710263 None:intergenic
AAGAGAGGCTGAAGTGGCTG+AGG 0.558698 3:-95709640 MsG0380017388.01.T01:CDS
GAAGAAAGCTGCTTGGACAA+TGG 0.561707 3:-95709598 MsG0380017388.01.T01:CDS
AGCTTTCTTCTTAGCCAACT+CGG 0.562096 3:+95709611 None:intergenic
TAAAGCTTGAAAAGAAAGCA+TGG 0.566286 3:-95710292 MsG0380017388.01.T01:CDS
AAGACGGCAGGGAGAACGAA+AGG 0.568717 3:+95710182 None:intergenic
TGGCTAAGAAGAAAGCTGCT+TGG 0.570632 3:-95709605 MsG0380017388.01.T01:CDS
GGCTGAGGCTAATTCCGAGT+TGG 0.571047 3:-95709625 MsG0380017388.01.T01:CDS
GGTAAAGATCCCATCCAAGC+CGG 0.577737 3:+95708102 None:intergenic
ATGGGTATGAAAGAAGTTGC+TGG 0.579940 3:-95708186 MsG0380017388.01.T01:CDS
TACCTTGTGATAACTGGCGC+CGG 0.580254 3:-95710326 MsG0380017388.01.T01:CDS
TGCCAATGTTAAGCAATTGG+TGG 0.581862 3:-95709913 MsG0380017388.01.T01:intron
GTGACACTTGGGAATGCTCA+AGG 0.583871 3:-95708399 MsG0380017388.01.T01:CDS
CGAAGGTTATTGCGATGCAG+AGG 0.587186 3:-95709725 MsG0380017388.01.T01:CDS
GAATCAAAGAGAGGCTGAAG+TGG 0.589954 3:-95709646 MsG0380017388.01.T01:CDS
CTCAGCTTCCCTTAGAGCCA+CGG 0.590772 3:+95709542 None:intergenic
AGGTGTAATTCACCGGTGAG+AGG 0.592989 3:+95710237 None:intergenic
GAACAACTACACAGCTGTAA+GGG 0.593770 3:-95708343 MsG0380017388.01.T01:CDS
ACTCATGGCTTGAACTTCGA+AGG 0.596495 3:+95710217 None:intergenic
CCTCGTTGCTTCAATGACAA+TGG 0.596534 3:-95710030 MsG0380017388.01.T01:CDS
TTAGTTTGGCATATTTGAGG+AGG 0.598221 3:+95710126 None:intergenic
ACGAGGACCTATTGTGAAGA+CGG 0.598551 3:+95710166 None:intergenic
CAGAGGGGATTGTGACACTT+GGG 0.598815 3:-95708410 MsG0380017388.01.T01:CDS
TCTGTATGAGAAGAAGGCAG+AGG 0.600808 3:-95708523 MsG0380017388.01.T01:CDS
GCGATGCAGAGGGCTGGAGA+AGG 0.602267 3:-95709714 MsG0380017388.01.T01:CDS
GACCTATTGTGAAGACGGCA+GGG 0.603396 3:+95710171 None:intergenic
TAATGGTGGTGATAATAATG+GGG 0.604276 3:-95708226 MsG0380017388.01.T01:CDS
GATTGGAGAGTTTATCATGA+GGG 0.606472 3:+95710099 None:intergenic
CTCGTTCAAGGAATCATCGA+AGG 0.607063 3:-95710065 MsG0380017388.01.T01:CDS
AATTATACAAGAAACAAAAG+AGG 0.608989 3:-95708556 MsG0380017388.01.T01:intron
AGTTGCAAGGTGAGGTTGAG+AGG 0.610701 3:-95709521 MsG0380017388.01.T01:CDS
CTAAGGGAAGCTGAGTTGCA+AGG 0.613783 3:-95709534 MsG0380017388.01.T01:CDS
GTGGCAGAAGCTAAGATGAA+AGG 0.614706 3:-95709813 MsG0380017388.01.T01:CDS
ATTGGAGAGTTTATCATGAG+GGG 0.615848 3:+95710100 None:intergenic
TTTGGGACAAAAGACGCAGA+TGG 0.620243 3:-95709862 MsG0380017388.01.T01:CDS
TTGTTTGCGAGCATAAAATG+TGG 0.626952 3:+95708470 None:intergenic
AATGGTGGTGATAATAATGG+GGG 0.628201 3:-95708225 MsG0380017388.01.T01:CDS
CACCGGTGAGAGGTCGAAGA+CGG 0.628279 3:+95710247 None:intergenic
GCTAGTGTTGAATATGACAA+AGG 0.629784 3:-95709447 MsG0380017388.01.T01:intron
ATTGGTTCGAAATTGAGGGA+AGG 0.631232 3:-95709786 MsG0380017388.01.T01:CDS
AGACGGCAGGGAGAACGAAA+GGG 0.631236 3:+95710183 None:intergenic
GCTTGAGGCTGCTAAAGCCG+TGG 0.632981 3:-95709559 MsG0380017388.01.T01:CDS
GAAGGTTATTGCGATGCAGA+GGG 0.633633 3:-95709724 MsG0380017388.01.T01:CDS
TATGAGAAATATTCATGACC+AGG 0.636387 3:+95709885 None:intergenic
GGAAGCAGCGAATCAAGCTA+GGG 0.637623 3:-95709841 MsG0380017388.01.T01:CDS
GATTGCTAAGATTAATGCCG+AGG 0.643593 3:-95708286 MsG0380017388.01.T01:CDS
GGAAGCTGAGTTGCAAGGTG+AGG 0.648282 3:-95709529 MsG0380017388.01.T01:CDS
GAAAATTGATGCAGAGACGA+AGG 0.652587 3:-95709742 MsG0380017388.01.T01:CDS
TTCCGGCGCCAGTTATCACA+AGG 0.656470 3:+95710324 None:intergenic
TGGACAGTCTTAAACAGAGG+TGG 0.656626 3:+95708147 None:intergenic
GATTACTTGATGATAAATGG+TGG 0.658453 3:-95708321 MsG0380017388.01.T01:CDS
TCATGGACAGTCTTAAACAG+AGG 0.660499 3:+95708144 None:intergenic
TGCTAAGATTAATGCCGAGG+CGG 0.661554 3:-95708283 MsG0380017388.01.T01:CDS
AGACGGTGCAGGATTGACCC+GGG 0.662490 3:+95710264 None:intergenic
GTACACTTCTCAATGCACTT+GGG 0.664100 3:-95708365 MsG0380017388.01.T01:CDS
AAACAATATCAACATGTACC+GGG 0.666012 3:-95710366 None:intergenic
GAAAGCTGCTTGGACAATGG+CGG 0.679670 3:-95709595 MsG0380017388.01.T01:CDS
TGATTGGAGAGTTTATCATG+AGG 0.680440 3:+95710098 None:intergenic
ATTAATGCCGAGGCGGTACG+CGG 0.680968 3:-95708276 MsG0380017388.01.T01:CDS
GAATCAAGCTAGGGTTGACG+TGG 0.682564 3:-95709832 MsG0380017388.01.T01:CDS
GCTGGAGAAGGTGAGAAACA+GGG 0.684270 3:-95709702 MsG0380017388.01.T01:CDS
AAAGATCCCATCCAAGCCGG+AGG 0.687910 3:+95708105 None:intergenic
AGAAACAGGGAATTAAAGTG+AGG 0.688934 3:-95709689 MsG0380017388.01.T01:CDS
CTTTCGTAATCGTCAACACG+AGG 0.692794 3:+95710149 None:intergenic
CCATTGTCATTGAAGCAACG+AGG 0.710320 3:+95710030 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATTATAAAATTAAATCATT+CGG - Chr3:95709508-95709527 MsG0380017388.01.T01:CDS 10.0%
!!! ATTAAAAATCTTCTTTTTTT+TGG + Chr3:95709803-95709822 None:intergenic 10.0%
!!! TATGTTTTACTTTTAATCAA+CGG + Chr3:95709735-95709754 None:intergenic 15.0%
!! AAAAGTAAAACATAACAAGT+AGG - Chr3:95709741-95709760 MsG0380017388.01.T01:CDS 20.0%
!! AATTATACAAGAAACAAAAG+AGG - Chr3:95709883-95709902 MsG0380017388.01.T01:CDS 20.0%
!! CATGAATATTTCTCATATTT+GGG - Chr3:95708560-95708579 MsG0380017388.01.T01:intron 20.0%
!! CCACAATATAGTTTAATAAA+AGG + Chr3:95709327-95709346 None:intergenic 20.0%
!! TCATGAATATTTCTCATATT+TGG - Chr3:95708559-95708578 MsG0380017388.01.T01:intron 20.0%
!! TTAAATTCATACATATACCT+AGG + Chr3:95709189-95709208 None:intergenic 20.0%
!!! AAAAATCTTCTTTTTTTTGG+TGG + Chr3:95709800-95709819 None:intergenic 20.0%
!!! CCTTTTATTAAACTATATTG+TGG - Chr3:95709324-95709343 MsG0380017388.01.T01:intron 20.0%
! AAGAAAAAGATTGAAGAATG+TGG - Chr3:95709668-95709687 MsG0380017388.01.T01:CDS 25.0%
! AAGAAGAAGTTAAATTTGCA+AGG + Chr3:95709023-95709042 None:intergenic 25.0%
! AAGATTAGTATTTGGACTAA+TGG - Chr3:95710196-95710215 MsG0380017388.01.T01:CDS 25.0%
! ACACAAATAATAGCAAGAAA+AGG + Chr3:95709598-95709617 None:intergenic 25.0%
! ATATTGAAACCAATCACAAA+GGG + Chr3:95709223-95709242 None:intergenic 25.0%
! ATGATATATGTTCATTTGCA+AGG + Chr3:95709471-95709490 None:intergenic 25.0%
! GTATATTAACTATGGATTTG+CGG + Chr3:95709449-95709468 None:intergenic 25.0%
! TATATTGAAACCAATCACAA+AGG + Chr3:95709224-95709243 None:intergenic 25.0%
! TTAACAAAAATTGACAAGGT+TGG + Chr3:95709705-95709724 None:intergenic 25.0%
! TTAGTCCAAATACTAATCTT+AGG + Chr3:95710196-95710215 None:intergenic 25.0%
! TTGAATGAAATTGACCAATT+CGG - Chr3:95708489-95708508 MsG0380017388.01.T01:CDS 25.0%
! TTTGCAAGGTATATTAACTA+TGG + Chr3:95709457-95709476 None:intergenic 25.0%
!! AAATTAGTTTGGCATATTTG+AGG + Chr3:95708319-95708338 None:intergenic 25.0%
!! TAATGTTTAATCTGTCGATT+GGG + Chr3:95709394-95709413 None:intergenic 25.0%
!!! AATGTTTACTTTTTAAGTGC+TGG - Chr3:95709820-95709839 MsG0380017388.01.T01:CDS 25.0%
!!! TCACTGTAATTACAGTTTTT+TGG - Chr3:95709103-95709122 MsG0380017388.01.T01:intron 25.0%
AAAGGATCATGATTTAGACT+TGG + Chr3:95709580-95709599 None:intergenic 30.0%
AAGTAGCAAAATGCTAATTG+AGG - Chr3:95709423-95709442 MsG0380017388.01.T01:intron 30.0%
ATTAGTATTTGGACTAATGG+TGG - Chr3:95710199-95710218 MsG0380017388.01.T01:CDS 30.0%
CCTGTTAACAAAAATTGACA+AGG + Chr3:95709709-95709728 None:intergenic 30.0%
GTAATGTTTAATCTGTCGAT+TGG + Chr3:95709395-95709414 None:intergenic 30.0%
GTTATACGCAAAGAAAAAAG+AGG - Chr3:95710006-95710025 MsG0380017388.01.T01:intron 30.0%
TAAAGCTTGAAAAGAAAGCA+TGG - Chr3:95708147-95708166 MsG0380017388.01.T01:CDS 30.0%
TATGAGAAATATTCATGACC+AGG + Chr3:95708557-95708576 None:intergenic 30.0%
TATTGAAACCAATCACAAAG+GGG + Chr3:95709222-95709241 None:intergenic 30.0%
TATTTACGAAGATCATAGGA+CGG - Chr3:95709270-95709289 MsG0380017388.01.T01:intron 30.0%
TGCATATTTACGAAGATCAT+AGG - Chr3:95709266-95709285 MsG0380017388.01.T01:intron 30.0%
TTGAGCCTAAGATTAGTATT+TGG - Chr3:95710188-95710207 MsG0380017388.01.T01:CDS 30.0%
TTGTAAATCCATATCCGAAT+TGG + Chr3:95708506-95708525 None:intergenic 30.0%
! AACTTTAAGTTTAAGCTCCT+AGG - Chr3:95709169-95709188 MsG0380017388.01.T01:intron 30.0%
! AATGTTTAATCTGTCGATTG+GGG + Chr3:95709393-95709412 None:intergenic 30.0%
! ACTAATGGTGGTGATAATAA+TGG - Chr3:95710211-95710230 MsG0380017388.01.T01:CDS 30.0%
! AGGGATTACTTGATGATAAA+TGG - Chr3:95710115-95710134 MsG0380017388.01.T01:CDS 30.0%
! CCTTGTCAATTTTTGTTAAC+AGG - Chr3:95709706-95709725 MsG0380017388.01.T01:CDS 30.0%
! CTAATGGTGGTGATAATAAT+GGG - Chr3:95710212-95710231 MsG0380017388.01.T01:CDS 30.0%
! GATTACTTGATGATAAATGG+TGG - Chr3:95710118-95710137 MsG0380017388.01.T01:CDS 30.0%
! TAATGGTGGTGATAATAATG+GGG - Chr3:95710213-95710232 MsG0380017388.01.T01:CDS 30.0%
!! AGTTTTTGAGAATCAAAGAG+AGG - Chr3:95708784-95708803 MsG0380017388.01.T01:intron 30.0%
!! TGAAATTGGTTCGAAATTGA+GGG - Chr3:95708649-95708668 MsG0380017388.01.T01:intron 30.0%
!!! AATCTTCTTTTTTTTGGTGG+TGG + Chr3:95709797-95709816 None:intergenic 30.0%
AACGAGTTCATTAACGTGAT+TGG + Chr3:95708360-95708379 None:intergenic 35.0%
AAGCTTTACATCGTCAATTC+CGG + Chr3:95708135-95708154 None:intergenic 35.0%
ACTATATTGTGGTTGCAGAT+AGG - Chr3:95709335-95709354 MsG0380017388.01.T01:intron 35.0%
AGAAACAGGGAATTAAAGTG+AGG - Chr3:95708750-95708769 MsG0380017388.01.T01:intron 35.0%
AGCAATTCTGTATGAGAAGA+AGG - Chr3:95709910-95709929 MsG0380017388.01.T01:intron 35.0%
ATCATGAGGGGAAATTAGTT+TGG + Chr3:95708330-95708349 None:intergenic 35.0%
ATCCACCAATTGCTTAACAT+TGG + Chr3:95708531-95708550 None:intergenic 35.0%
ATTGAAACCAATCACAAAGG+GGG + Chr3:95709221-95709240 None:intergenic 35.0%
ATTGGAGAGTTTATCATGAG+GGG + Chr3:95708342-95708361 None:intergenic 35.0%
ATTTACGAAGATCATAGGAC+GGG - Chr3:95709271-95709290 MsG0380017388.01.T01:intron 35.0%
CAATGCCAATGTTAAGCAAT+TGG - Chr3:95708523-95708542 MsG0380017388.01.T01:CDS 35.0%
GAAATTGACCAATTCGGATA+TGG - Chr3:95708495-95708514 MsG0380017388.01.T01:CDS 35.0%
GACGGGAGTTAAAAATTCAA+TGG - Chr3:95709288-95709307 MsG0380017388.01.T01:intron 35.0%
GATTGGAGAGTTTATCATGA+GGG + Chr3:95708343-95708362 None:intergenic 35.0%
GCTAAGATGAAAGGTGAAAT+TGG - Chr3:95708635-95708654 MsG0380017388.01.T01:intron 35.0%
TCAGAATACCTTGTGATAAC+TGG - Chr3:95708107-95708126 MsG0380017388.01.T01:CDS 35.0%
TGATTGGAGAGTTTATCATG+AGG + Chr3:95708344-95708363 None:intergenic 35.0%
TTGTTTGCGAGCATAAAATG+TGG + Chr3:95709972-95709991 None:intergenic 35.0%
! AATAATGGGGGAATAACTGA+AGG - Chr3:95710226-95710245 MsG0380017388.01.T01:CDS 35.0%
! AATGGTGGTGATAATAATGG+GGG - Chr3:95710214-95710233 MsG0380017388.01.T01:CDS 35.0%
! ATGTTTAATCTGTCGATTGG+GGG + Chr3:95709392-95709411 None:intergenic 35.0%
! GCTAGTGTTGAATATGACAA+AGG - Chr3:95708992-95709011 MsG0380017388.01.T01:intron 35.0%
! TTAGTTTGGCATATTTGAGG+AGG + Chr3:95708316-95708335 None:intergenic 35.0%
!! AAAGAAAGCATGGATTTTCC+CGG - Chr3:95708157-95708176 MsG0380017388.01.T01:CDS 35.0%
!! ATTCAACACTAGCTTTGCTA+AGG + Chr3:95708985-95709004 None:intergenic 35.0%
!! GTGAAATTGGTTCGAAATTG+AGG - Chr3:95708648-95708667 MsG0380017388.01.T01:intron 35.0%
!! TTAAGTGCTGGTTGAAATTC+TGG - Chr3:95709832-95709851 MsG0380017388.01.T01:CDS 35.0%
AGCAACTTCTTTCATACCCA+TGG + Chr3:95710254-95710273 None:intergenic 40.0%
AGCTTTCTTCTTAGCCAACT+CGG + Chr3:95708831-95708850 None:intergenic 40.0%
AGTACACTTCTCAATGCACT+TGG - Chr3:95710073-95710092 MsG0380017388.01.T01:CDS 40.0%
ATGGGTATGAAAGAAGTTGC+TGG - Chr3:95710253-95710272 MsG0380017388.01.T01:CDS 40.0%
CAAAGAAAAAAGAGGCAGAG+GGG - Chr3:95710014-95710033 MsG0380017388.01.T01:intron 40.0%
CACGTTAATGAACTCGTTCA+AGG - Chr3:95708362-95708381 MsG0380017388.01.T01:CDS 40.0%
CTTCGTAAATATGCAGTGCA+CGG + Chr3:95709261-95709280 None:intergenic 40.0%
GAAAATTGATGCAGAGACGA+AGG - Chr3:95708697-95708716 MsG0380017388.01.T01:intron 40.0%
GAACAACTACACAGCTGTAA+GGG - Chr3:95710096-95710115 MsG0380017388.01.T01:CDS 40.0%
GATTGCTAAGATTAATGCCG+AGG - Chr3:95710153-95710172 MsG0380017388.01.T01:CDS 40.0%
GCAAAGAAAAAAGAGGCAGA+GGG - Chr3:95710013-95710032 MsG0380017388.01.T01:intron 40.0%
GTACACTTCTCAATGCACTT+GGG - Chr3:95710074-95710093 MsG0380017388.01.T01:CDS 40.0%
GTATTTACCCCCTTTGTGAT+TGG - Chr3:95709211-95709230 MsG0380017388.01.T01:intron 40.0%
GTTGAAATTCTGGATGCTCT+AGG - Chr3:95709842-95709861 MsG0380017388.01.T01:CDS 40.0%
TCATGGACAGTCTTAAACAG+AGG + Chr3:95710298-95710317 None:intergenic 40.0%
TGCCAATGTTAAGCAATTGG+TGG - Chr3:95708526-95708545 MsG0380017388.01.T01:CDS 40.0%
TGCTTCAATGACAATGGAAG+AGG - Chr3:95708415-95708434 MsG0380017388.01.T01:CDS 40.0%
TGTTGAGTTAGCAAGTGCTA+TGG - Chr3:95709633-95709652 MsG0380017388.01.T01:CDS 40.0%
! ACAATGGAAGAGGTTTTCAG+AGG - Chr3:95708425-95708444 MsG0380017388.01.T01:CDS 40.0%
! ACTTCGAAGGTGTAATTCAC+CGG + Chr3:95708212-95708231 None:intergenic 40.0%
! AGAAGAAGCGCAAAAAGCTT+TGG - Chr3:95709940-95709959 MsG0380017388.01.T01:intron 40.0%
! ATTCTGATGCTTTTGCTACC+CGG + Chr3:95708094-95708113 None:intergenic 40.0%
!! AAGAAAGCATGGATTTTCCC+GGG - Chr3:95708158-95708177 MsG0380017388.01.T01:CDS 40.0%
!! AGCTTTAAGCTTCTCAGTAG+TGG + Chr3:95708957-95708976 None:intergenic 40.0%
!! ATTGGTTCGAAATTGAGGGA+AGG - Chr3:95708653-95708672 MsG0380017388.01.T01:intron 40.0%
AAGACTGTCCATGAGCAAAC+AGG - Chr3:95710304-95710323 MsG0380017388.01.T01:CDS 45.0%
ACGAGGACCTATTGTGAAGA+CGG + Chr3:95708276-95708295 None:intergenic 45.0%
ACTCATGGCTTGAACTTCGA+AGG + Chr3:95708225-95708244 None:intergenic 45.0%
CCATTGTCATTGAAGCAACG+AGG + Chr3:95708412-95708431 None:intergenic 45.0%
CCTCGTTGCTTCAATGACAA+TGG - Chr3:95708409-95708428 MsG0380017388.01.T01:CDS 45.0%
CGCAAAGAAAAAAGAGGCAG+AGG - Chr3:95710012-95710031 MsG0380017388.01.T01:intron 45.0%
CTAGGTACAAGAGGCTAACT+GGG - Chr3:95709860-95709879 MsG0380017388.01.T01:CDS 45.0%
CTCGTTCAAGGAATCATCGA+AGG - Chr3:95708374-95708393 MsG0380017388.01.T01:CDS 45.0%
CTTTCGTAATCGTCAACACG+AGG + Chr3:95708293-95708312 None:intergenic 45.0%
GAAGAAAGCTGCTTGGACAA+TGG - Chr3:95708841-95708860 MsG0380017388.01.T01:intron 45.0%
GAAGGTTATTGCGATGCAGA+GGG - Chr3:95708715-95708734 MsG0380017388.01.T01:intron 45.0%
GAATCAAAGAGAGGCTGAAG+TGG - Chr3:95708793-95708812 MsG0380017388.01.T01:intron 45.0%
GGAACAACTACACAGCTGTA+AGG - Chr3:95710095-95710114 MsG0380017388.01.T01:CDS 45.0%
GTGGCAGAAGCTAAGATGAA+AGG - Chr3:95708626-95708645 MsG0380017388.01.T01:intron 45.0%
TCTAGGTACAAGAGGCTAAC+TGG - Chr3:95709859-95709878 MsG0380017388.01.T01:CDS 45.0%
TCTGTATGAGAAGAAGGCAG+AGG - Chr3:95709916-95709935 MsG0380017388.01.T01:intron 45.0%
TGCTAAGATTAATGCCGAGG+CGG - Chr3:95710156-95710175 MsG0380017388.01.T01:CDS 45.0%
TGGACAGTCTTAAACAGAGG+TGG + Chr3:95710295-95710314 None:intergenic 45.0%
TGGCTAAGAAGAAAGCTGCT+TGG - Chr3:95708834-95708853 MsG0380017388.01.T01:intron 45.0%
! AGGGAGTTTTTCTGCACTCA+TGG + Chr3:95708240-95708259 None:intergenic 45.0%
! CATCAATTTTCGCTGCGTTC+TGG + Chr3:95708688-95708707 None:intergenic 45.0%
! TTTGGGACAAAAGACGCAGA+TGG - Chr3:95708577-95708596 MsG0380017388.01.T01:intron 45.0%
!! GGAATAACTGAAGGTGCCAT+GGG - Chr3:95710235-95710254 MsG0380017388.01.T01:CDS 45.0%
AATATGCAGTGCACGGACGT+AGG + Chr3:95709254-95709273 None:intergenic 50.0%
AGGTGTAATTCACCGGTGAG+AGG + Chr3:95708205-95708224 None:intergenic 50.0%
AGTTGCAAGGTGAGGTTGAG+AGG - Chr3:95708918-95708937 MsG0380017388.01.T01:intron 50.0%
CAGAGGGGATTGTGACACTT+GGG - Chr3:95710029-95710048 MsG0380017388.01.T01:CDS 50.0%
CGAAGGTTATTGCGATGCAG+AGG - Chr3:95708714-95708733 MsG0380017388.01.T01:intron 50.0%
CTAAGGGAAGCTGAGTTGCA+AGG - Chr3:95708905-95708924 MsG0380017388.01.T01:intron 50.0%
GAAAGCTGCTTGGACAATGG+CGG - Chr3:95708844-95708863 MsG0380017388.01.T01:intron 50.0%
GAATCAAGCTAGGGTTGACG+TGG - Chr3:95708607-95708626 MsG0380017388.01.T01:intron 50.0%
GACCTATTGTGAAGACGGCA+GGG + Chr3:95708271-95708290 None:intergenic 50.0%
GCAACATGCCTGTTTGCTCA+TGG + Chr3:95710315-95710334 None:intergenic 50.0%
GCTGGAGAAGGTGAGAAACA+GGG - Chr3:95708737-95708756 MsG0380017388.01.T01:intron 50.0%
GGAAGCAGCGAATCAAGCTA+GGG - Chr3:95708598-95708617 MsG0380017388.01.T01:intron 50.0%
GGTAAAGATCCCATCCAAGC+CGG + Chr3:95710340-95710359 None:intergenic 50.0%
GTGACACTTGGGAATGCTCA+AGG - Chr3:95710040-95710059 MsG0380017388.01.T01:CDS 50.0%
TACCTTGTGATAACTGGCGC+CGG - Chr3:95708113-95708132 MsG0380017388.01.T01:CDS 50.0%
TGGAAGCAGCGAATCAAGCT+AGG - Chr3:95708597-95708616 MsG0380017388.01.T01:intron 50.0%
! AAGCAATTGGTGGATGTGCC+TGG - Chr3:95708536-95708555 MsG0380017388.01.T01:CDS 50.0%
! CTGGATGCTCTAGGTACAAG+AGG - Chr3:95709851-95709870 MsG0380017388.01.T01:CDS 50.0%
!! GGGAATAACTGAAGGTGCCA+TGG - Chr3:95710234-95710253 MsG0380017388.01.T01:CDS 50.0%
!! TGCTAAAGCCGTGGCTCTAA+GGG - Chr3:95708889-95708908 MsG0380017388.01.T01:intron 50.0%
AAAGATCCCATCCAAGCCGG+AGG + Chr3:95710337-95710356 None:intergenic 55.0%
AAGACGGCAGGGAGAACGAA+AGG + Chr3:95708260-95708279 None:intergenic 55.0%
AAGACGGTGCAGGATTGACC+CGG + Chr3:95708179-95708198 None:intergenic 55.0%
AAGAGAGGCTGAAGTGGCTG+AGG - Chr3:95708799-95708818 MsG0380017388.01.T01:intron 55.0%
AGACGGCAGGGAGAACGAAA+GGG + Chr3:95708259-95708278 None:intergenic 55.0%
ATTAATGCCGAGGCGGTACG+CGG - Chr3:95710163-95710182 MsG0380017388.01.T01:CDS 55.0%
CTCAGCTTCCCTTAGAGCCA+CGG + Chr3:95708900-95708919 None:intergenic 55.0%
CTCCCTGCCGTCTTCACAAT+AGG - Chr3:95708266-95708285 MsG0380017388.01.T01:CDS 55.0%
GCAAACAGGCATGTTGCCTC+CGG - Chr3:95710318-95710337 MsG0380017388.01.T01:CDS 55.0%
GCAGAGGGGATTGTGACACT+TGG - Chr3:95710028-95710047 MsG0380017388.01.T01:CDS 55.0%
GGAAGCTGAGTTGCAAGGTG+AGG - Chr3:95708910-95708929 MsG0380017388.01.T01:intron 55.0%
GGACCTATTGTGAAGACGGC+AGG + Chr3:95708272-95708291 None:intergenic 55.0%
GGCTGAGGCTAATTCCGAGT+TGG - Chr3:95708814-95708833 MsG0380017388.01.T01:intron 55.0%
GGCTGGAGAAGGTGAGAAAC+AGG - Chr3:95708736-95708755 MsG0380017388.01.T01:intron 55.0%
GTTATTGCGATGCAGAGGGC+TGG - Chr3:95708719-95708738 MsG0380017388.01.T01:intron 55.0%
TTCCGGCGCCAGTTATCACA+AGG + Chr3:95708118-95708137 None:intergenic 55.0%
TTGGACAATGGCGGCTCAAG+TGG - Chr3:95708853-95708872 MsG0380017388.01.T01:intron 55.0%
! CTGCTAAAGCCGTGGCTCTA+AGG - Chr3:95708888-95708907 MsG0380017388.01.T01:intron 55.0%
!! ATGTTGCCTCCGGCTTGGAT+GGG - Chr3:95710328-95710347 MsG0380017388.01.T01:CDS 55.0%
AGACGGTGCAGGATTGACCC+GGG + Chr3:95708178-95708197 None:intergenic 60.0%
CACCGGTGAGAGGTCGAAGA+CGG + Chr3:95708195-95708214 None:intergenic 60.0%
CACCGTCTTCGACCTCTCAC+CGG - Chr3:95708190-95708209 MsG0380017388.01.T01:CDS 60.0%
GCTTGAGGCTGCTAAAGCCG+TGG - Chr3:95708880-95708899 MsG0380017388.01.T01:intron 60.0%
GGCTCAAGTGGCTGAGCTTG+AGG - Chr3:95708865-95708884 MsG0380017388.01.T01:intron 60.0%
TGAGAGGTCGAAGACGGTGC+AGG + Chr3:95708189-95708208 None:intergenic 60.0%
!! CATGTTGCCTCCGGCTTGGA+TGG - Chr3:95710327-95710346 MsG0380017388.01.T01:CDS 60.0%
CAGGCATGTTGCCTCCGGCT+TGG - Chr3:95710323-95710342 MsG0380017388.01.T01:CDS 65.0%
CTCAAGTCCGCGTACCGCCT+CGG + Chr3:95710173-95710192 None:intergenic 65.0%
GCGATGCAGAGGGCTGGAGA+AGG - Chr3:95708725-95708744 MsG0380017388.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 95708086 95710375 95708086 ID=MsG0380017388.01;Name=MsG0380017388.01
Chr3 mRNA 95708086 95710375 95708086 ID=MsG0380017388.01.T01;Parent=MsG0380017388.01;Name=MsG0380017388.01.T01;_AED=0.47;_eAED=0.47;_QI=0|0|0|1|1|1|3|0|435
Chr3 exon 95710025 95710375 95710025 ID=MsG0380017388.01.T01:exon:13017;Parent=MsG0380017388.01.T01
Chr3 exon 95709448 95709922 95709448 ID=MsG0380017388.01.T01:exon:13016;Parent=MsG0380017388.01.T01
Chr3 exon 95708086 95708567 95708086 ID=MsG0380017388.01.T01:exon:13015;Parent=MsG0380017388.01.T01
Chr3 CDS 95710025 95710375 95710025 ID=MsG0380017388.01.T01:cds;Parent=MsG0380017388.01.T01
Chr3 CDS 95709448 95709922 95709448 ID=MsG0380017388.01.T01:cds;Parent=MsG0380017388.01.T01
Chr3 CDS 95708086 95708567 95708086 ID=MsG0380017388.01.T01:cds;Parent=MsG0380017388.01.T01
Gene Sequence

>MsG0380017388.01.T01

ATGTACCGGGTAGCAAAAGCATCAGAATACCTTGTGATAACTGGCGCCGGAATTGACGATGTAAAGCTTGAAAAGAAAGCATGGATTTTCCCGGGTCAATCCTGCACCGTCTTCGACCTCTCACCGGTGAATTACACCTTCGAAGTTCAAGCCATGAGTGCAGAAAAACTCCCTTTCGTTCTCCCTGCCGTCTTCACAATAGGTCCTCGTGTTGACGATTACGAAAGCCTCCTCAAATATGCCAAACTAATTTCCCCTCATGATAAACTCTCCAATCACGTTAATGAACTCGTTCAAGGAATCATCGAAGGCGAGACACGTGTCCTCGTTGCTTCAATGACAATGGAAGAGCAATTGGTGGATGTGCCTGGTCATGAATATTTCTCATATTTGGGACAAAAGACGCAGATGGAAGCAGCGAATCAAGCTAGGGTTGACGTGGCAGAAGCTAAGATGAAAGGTGAAATTGGTTCGAAATTGAGGGAAGGACAAACGATCCAGAACGCAGCGAAAATTGATGCAGAGACGAAGGTTATTGCGATGCAGAGGGCTGGAGAAGGTGAGAAACAGGGAATTAAAGTGAGGACTGAAGTGAAAGTTTTTGAGAATCAAAGAGAGGCTGAAGTGGCTGAGGCTAATTCCGAGTTGGCTAAGAAGAAAGCTGCTTGGACAATGGCGGCTCAAGTGGCTGAGCTTGAGGCTGCTAAAGCCGTGGCTCTAAGGGAAGCTGAGTTGCAAGGTGAGGTTGAGAGGATGAATGCTTTGACCACTACTGAGAAGCTTAAAGCTGATTTCCTTAGCAAAGCTAGTGTTGAATATGACAAAGAAACAAAAGAGGCAGAAGCAATTCTGTATGAGAAGAAGGCAGAGGCAGAAGAAGCGCAAAAAGCTTTGGCAGATTCCACATTTTATGCTCGCAAACAAGAAGCTGAAGCAGAGTTATACGCAAAGAAAAAAGAGGCAGAGGGGATTGTGACACTTGGGAATGCTCAAGGAGCATATGTAAGTACACTTCTCAATGCACTTGGGAACAACTACACAGCTGTAAGGGATTACTTGATGATAAATGGTGGCATGTTTCAAGAGATTGCTAAGATTAATGCCGAGGCGGTACGCGGACTTGAGCCTAAGATTAGTATTTGGACTAATGGTGGTGATAATAATGGGGGAATAACTGAAGGTGCCATGGGTATGAAAGAAGTTGCTGGTGTCTACAAGATGTTGCCACCTCTGTTTAAGACTGTCCATGAGCAAACAGGCATGTTGCCTCCGGCTTGGATGGGATCTTTACCTGACAAAAACTCTTAA
Protein sequence

>MsG0380017388.01.T01

MYRVAKASEYLVITGAGIDDVKLEKKAWIFPGQSCTVFDLSPVNYTFEVQAMSAEKLPFVLPAVFTIGPRVDDYESLLKYAKLISPHDKLSNHVNELVQGIIEGETRVLVASMTMEEQLVDVPGHEYFSYLGQKTQMEAANQARVDVAEAKMKGEIGSKLREGQTIQNAAKIDAETKVIAMQRAGEGEKQGIKVRTEVKVFENQREAEVAEANSELAKKKAAWTMAAQVAELEAAKAVALREAELQGEVERMNALTTTEKLKADFLSKASVEYDKETKEAEAILYEKKAEAEEAQKALADSTFYARKQEAEAELYAKKKEAEGIVTLGNAQGAYVSTLLNALGNNYTAVRDYLMINGGMFQEIAKINAEAVRGLEPKISIWTNGGDNNGGITEGAMGMKEVAGVYKMLPPLFKTVHEQTGMLPPAWMGSLPDKNS*