AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047379.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047379.01.T01 MTR_3g106480 90.795 478 44 0 1 478 1 478 0.0 898
MsG0880047379.01.T01 MTR_1g115145 93.737 479 23 3 1 478 1 473 0.0 886
MsG0880047379.01.T01 MTR_1g073400 95.397 478 18 1 1 478 1 474 0.0 882
MsG0880047379.01.T01 MTR_1g071130 89.749 478 20 2 1 478 1 449 0.0 872
MsG0880047379.01.T01 MTR_3g106420 90.795 478 44 0 1 478 3 480 0.0 869
MsG0880047379.01.T01 MTR_3g106485 91.004 478 39 2 1 478 1 474 0.0 864
MsG0880047379.01.T01 MTR_1g083190 88.494 478 47 1 1 478 3 472 0.0 835
MsG0880047379.01.T01 MTR_3g106430 90.776 477 40 2 1 477 1 473 0.0 831
MsG0880047379.01.T01 MTR_3g106470 79.874 477 40 2 1 477 32 452 0.0 729
MsG0880047379.01.T01 MTR_8g063830 80.000 465 52 5 1 464 1 425 0.0 671
MsG0880047379.01.T01 MTR_3g065540 64.348 115 14 1 40 154 14 101 1.28e-40 141
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047379.01.T01 AT5G25260 74.684 474 108 2 1 474 1 462 0.0 735
MsG0880047379.01.T01 AT5G25250 75.053 473 104 2 1 473 1 459 0.0 725
MsG0880047379.01.T01 AT5G64870 71.610 472 123 1 2 473 3 463 0.0 658

Find 123 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAATATTTCTCATATTT+AGG 0.103686 8:+85483782 MsG0880047379.01.T01:CDS
TGCTTGATACTGTCATATTT+TGG 0.190177 8:+85485191 MsG0880047379.01.T01:three_prime_UTR
TGTAAAATTGTAAATGAAAT+TGG 0.234067 8:-85485253 None:intergenic
TTGAACCTAAGATTAGTATT+TGG 0.251111 8:+85484791 MsG0880047379.01.T01:CDS
CGGAATAACCGAAGGTTCTA+TGG 0.252432 8:+85484837 MsG0880047379.01.T01:CDS
ATTAGGAGGATTCAAGTATT+AGG 0.252644 8:+85484978 MsG0880047379.01.T01:exon
CTGCTAAAGCTGTGGCTCTA+AGG 0.272737 8:+85484110 MsG0880047379.01.T01:CDS
TGCTAAATTACCAAAATAAA+AGG 0.294697 8:-85485020 None:intergenic
AGGGATTACTTGATGATAAA+TGG 0.295084 8:+85484718 MsG0880047379.01.T01:CDS
ATGAATATTTCTCATATTTA+GGG 0.305111 8:+85483783 MsG0880047379.01.T01:CDS
TCCGACAAAAGTGCTTAATT+AGG 0.313541 8:+85484961 MsG0880047379.01.T01:exon
GTGAAGTTGGTTCAAAATCT+AGG 0.314495 8:+85483870 MsG0880047379.01.T01:CDS
TTAGTCCAAATACTAATCTT+AGG 0.318195 8:-85484796 None:intergenic
CTTCCTGCCGTCTTCACAAT+TGG 0.320772 8:+85483491 MsG0880047379.01.T01:CDS
TGTAGGTACAAGAGGCTAAC+TGG 0.334134 8:+85484464 MsG0880047379.01.T01:intron
CATGTTGCCTCCTGCTTGGA+TGG 0.342126 8:+85484930 MsG0880047379.01.T01:CDS
ACAAGGAGGGGTTTAGAGTT+AGG 0.344151 8:+85483972 MsG0880047379.01.T01:CDS
CAACTCGAGTTGAATCAATT+CGG 0.347216 8:+85483710 MsG0880047379.01.T01:CDS
AAGATTAGTATTTGGACTAA+TGG 0.361897 8:+85484799 MsG0880047379.01.T01:CDS
GAAGCGACTACACCGCTCTA+AGG 0.383076 8:+85484698 MsG0880047379.01.T01:CDS
AAGTTTGATGTCTTCGATTC+CGG 0.389998 8:-85483357 None:intergenic
GATGTCTTCGATTCCGGCTC+CGG 0.392612 8:-85483351 None:intergenic
ATGCTTTGATGATCGTAAAC+TGG 0.408067 8:-85483280 None:intergenic
TCCGAGTACCTTGTGATAAC+CGG 0.419877 8:+85483332 MsG0880047379.01.T01:CDS
CAACGCGAATGTTAAGCAAT+TGG 0.420451 8:+85483745 MsG0880047379.01.T01:CDS
GATACATGTTTCTGATTCAC+TGG 0.426917 8:+85485064 MsG0880047379.01.T01:three_prime_UTR
CGTATTTGAGGAGGCTTTCG+TGG 0.435533 8:-85483529 None:intergenic
AACTCGAGTTGAATCAATTC+GGG 0.439303 8:+85483711 MsG0880047379.01.T01:CDS
TTTCATACCCATAGAACCTT+CGG 0.446868 8:-85484845 None:intergenic
TCAAACTTGCAAAGAAATCA+TGG 0.455886 8:+85483372 MsG0880047379.01.T01:CDS
AAGCATAATCAACAATGTAC+AGG 0.458943 8:+85483297 MsG0880047379.01.T01:exon
GCAGAAGGGATTGTGACAAT+TGG 0.461115 8:+85484631 MsG0880047379.01.T01:CDS
AACACTGTTCATGAGCAAAC+AGG 0.461993 8:+85484907 MsG0880047379.01.T01:CDS
AGCAGTTCTGTATGAGAAGA+AGG 0.479849 8:+85484516 MsG0880047379.01.T01:CDS
TTATCAATTTAGCGTATTTG+AGG 0.483745 8:-85483541 None:intergenic
GAAGAAAGCGGCATGGACTA+AGG 0.488752 8:+85484063 MsG0880047379.01.T01:CDS
GACAAAAGTGCTTAATTAGG+AGG 0.496323 8:+85484964 MsG0880047379.01.T01:exon
TCCTTTGAAAACCTCTTCCA+TGG 0.499133 8:-85483651 None:intergenic
CGAAAGTTATTGCGATGCAG+AGG 0.499935 8:+85483936 MsG0880047379.01.T01:CDS
CGCGAATGTTAAGCAATTGG+TGG 0.500388 8:+85483748 MsG0880047379.01.T01:CDS
TGCTAAAGCTGTGGCTCTAA+GGG 0.501192 8:+85484111 MsG0880047379.01.T01:CDS
CAGGCATGTTGCCTCCTGCT+TGG 0.503335 8:+85484926 MsG0880047379.01.T01:CDS
TGGAAGCAGCGAATCAAGCT+AGG 0.506083 8:+85483819 MsG0880047379.01.T01:CDS
TGCTTCGATGACCATGGAAG+AGG 0.508530 8:+85483640 MsG0880047379.01.T01:CDS
GCTAAGATGAAAGGTGAAGT+TGG 0.511842 8:+85483857 MsG0880047379.01.T01:CDS
GTTATTGCGATGCAGAGGGC+TGG 0.513050 8:+85483941 MsG0880047379.01.T01:CDS
TAGAGTTAGGACTGAAGTGA+AGG 0.517399 8:+85483985 MsG0880047379.01.T01:CDS
TGAAGTTGGTTCAAAATCTA+GGG 0.519749 8:+85483871 MsG0880047379.01.T01:CDS
CATGTCAAGGAACTCGTTCA+AGG 0.522287 8:+85483587 MsG0880047379.01.T01:CDS
ATGTTGCCTCCTGCTTGGAT+GGG 0.522936 8:+85484931 MsG0880047379.01.T01:CDS
ATGGGTATGAAAGAGGTTGC+TGG 0.526365 8:+85484856 MsG0880047379.01.T01:CDS
AAGCAATTGGTGGATGTGCC+TGG 0.526695 8:+85483758 MsG0880047379.01.T01:CDS
GGCTCAAGTGGCTGAAGTCG+AGG 0.533715 8:+85484087 MsG0880047379.01.T01:CDS
TGGTGGCATGTTTCAAGAGA+TGG 0.539247 8:+85484738 MsG0880047379.01.T01:CDS
GCTGGAGAGAGTGACAAGGA+GGG 0.539332 8:+85483959 MsG0880047379.01.T01:CDS
ATGGACTAAGGCGGCTCAAG+TGG 0.540306 8:+85484075 MsG0880047379.01.T01:CDS
GGCTGAGGCTAATGCTGAGT+TGG 0.546673 8:+85484036 MsG0880047379.01.T01:CDS
TACCTTGTGATAACCGGAGC+CGG 0.547560 8:+85483338 MsG0880047379.01.T01:CDS
CACCGTCTTCGACCTCTCAC+CGG 0.548854 8:+85483415 MsG0880047379.01.T01:CDS
GATAAGGTTCCCATCCAAGC+AGG 0.550974 8:-85484940 None:intergenic
TCCGGTTATCACAAGGTACT+CGG 0.555985 8:-85483333 None:intergenic
AAGAGAGGCTGAAGTGGCTG+AGG 0.558698 8:+85484021 MsG0880047379.01.T01:CDS
GTAGGTACAAGAGGCTAACT+GGG 0.564807 8:+85484465 MsG0880047379.01.T01:intron
GGACCAATTGTGAAGACGGC+AGG 0.565432 8:-85483494 None:intergenic
ATTAGTATTTGGACTAATGG+AGG 0.567585 8:+85484802 MsG0880047379.01.T01:CDS
CCTCGCTGCTTCGATGACCA+TGG 0.570615 8:+85483634 MsG0880047379.01.T01:CDS
CTGGATGGTGTAGGTACAAG+AGG 0.571024 8:+85484456 MsG0880047379.01.T01:intron
ACTTCGAAGGTATAGTTCAC+CGG 0.571447 8:-85483434 None:intergenic
TGGACTAATGGAGGCGACAA+TGG 0.573458 8:+85484811 MsG0880047379.01.T01:CDS
AAGACGGTGCAAGATTGACC+AGG 0.574032 8:-85483401 None:intergenic
AGGTATAGTTCACCGGTGAG+AGG 0.574045 8:-85483427 None:intergenic
AGGTTCTATGGGTATGAAAG+AGG 0.575883 8:+85484849 MsG0880047379.01.T01:CDS
AAGCGACTACACCGCTCTAA+GGG 0.576735 8:+85484699 MsG0880047379.01.T01:CDS
GGAATAACCGAAGGTTCTAT+GGG 0.578747 8:+85484838 MsG0880047379.01.T01:CDS
GGCAGAAGCACAGAAAGCAT+TGG 0.582553 8:+85484543 MsG0880047379.01.T01:CDS
GTGACAATTGGACAAGCTCA+AGG 0.582712 8:+85484643 MsG0880047379.01.T01:CDS
AGTACACTTCTCAATGCACT+TGG 0.583305 8:+85484676 MsG0880047379.01.T01:CDS
TCAATTTAGCGTATTTGAGG+AGG 0.583375 8:-85483538 None:intergenic
AATGGAGGCGACAATGGAGG+CGG 0.583942 8:+85484817 MsG0880047379.01.T01:CDS
GATTCGAGAGTTTATCATGA+GGG 0.586669 8:-85483565 None:intergenic
GGCTGGAGAGAGTGACAAGG+AGG 0.587239 8:+85483958 MsG0880047379.01.T01:CDS
GAATCAAAGAGAGGCTGAAG+TGG 0.589954 8:+85484015 MsG0880047379.01.T01:CDS
TTTAGGGCAAAAGACGCAGA+TGG 0.590887 8:+85483799 MsG0880047379.01.T01:CDS
ACGAGGACCAATTGTGAAGA+CGG 0.593813 8:-85483498 None:intergenic
ATTCGAGAGTTTATCATGAG+GGG 0.597738 8:-85483564 None:intergenic
TCTGTATGAGAAGAAGGCAG+AGG 0.600808 8:+85484522 MsG0880047379.01.T01:CDS
ACTCATGGCTTGAACTTCGA+AGG 0.601319 8:-85483447 None:intergenic
CTCGTTCAAGGAATCATCGA+AGG 0.607063 8:+85483599 MsG0880047379.01.T01:CDS
TTCCGGCTCCGGTTATCACA+AGG 0.609955 8:-85483340 None:intergenic
AAATATGACAGTATCAAGCA+TGG 0.610257 8:-85485188 None:intergenic
AGTTGCAAGGTGAGGTTGAG+AGG 0.610701 8:+85484140 MsG0880047379.01.T01:CDS
GTTGGTTCAAAATCTAGGGA+AGG 0.612463 8:+85483875 MsG0880047379.01.T01:CDS
CTAAGGGAAGCTGAGTTGCA+AGG 0.613783 8:+85484127 MsG0880047379.01.T01:CDS
GTGGCAGAAGCTAAGATGAA+AGG 0.614706 8:+85483848 MsG0880047379.01.T01:CDS
CTGGAGAGAGTGACAAGGAG+GGG 0.616817 8:+85483960 MsG0880047379.01.T01:CDS
CACCGGTGAGAGGTCGAAGA+CGG 0.628279 8:-85483417 None:intergenic
GAAAGTTATTGCGATGCAGA+GGG 0.631337 8:+85483937 MsG0880047379.01.T01:CDS
AGCATAATCAACAATGTACA+GGG 0.635277 8:+85483298 MsG0880047379.01.T01:exon
TATGAGAAATATTCATGACC+AGG 0.636387 8:-85483776 None:intergenic
GGAAGCAGCGAATCAAGCTA+GGG 0.637623 8:+85483820 MsG0880047379.01.T01:CDS
AAGACGGCAGGAAGAACGAA+AGG 0.640541 8:-85483482 None:intergenic
GATGGCTAAGATTAATGCTG+AGG 0.642407 8:+85484756 MsG0880047379.01.T01:CDS
GAGGGCTGGAGAGAGTGACA+AGG 0.646522 8:+85483955 MsG0880047379.01.T01:CDS
GGAAGCTGAGTTGCAAGGTG+AGG 0.648282 8:+85484132 MsG0880047379.01.T01:CDS
ACTAATGGAGGCGACAATGG+AGG 0.650576 8:+85484814 MsG0880047379.01.T01:CDS
TAGTGTTCAATATGAAACCA+AGG 0.651992 8:+85484216 MsG0880047379.01.T01:CDS
TAAACTCTCGAATCATGTCA+AGG 0.655320 8:+85483574 MsG0880047379.01.T01:CDS
ATTAATGCTGAGGCAGTACG+TGG 0.657117 8:+85484766 MsG0880047379.01.T01:CDS
GATTACTTGATGATAAATGG+TGG 0.658453 8:+85484721 MsG0880047379.01.T01:CDS
TGGCGAAGAAGAAAGCGGCA+TGG 0.658653 8:+85484056 MsG0880047379.01.T01:CDS
CTTTCGTGGTCGTCAACACG+AGG 0.660217 8:-85483515 None:intergenic
TGAACAGTGTTAAACAGTGG+TGG 0.660448 8:-85484895 None:intergenic
AGTCGAGGCTGCTAAAGCTG+TGG 0.666475 8:+85484102 MsG0880047379.01.T01:CDS
AAGGTTCCCATCCAAGCAGG+AGG 0.669932 8:-85484937 None:intergenic
AATGGAGGCGGAATAACCGA+AGG 0.682049 8:+85484829 MsG0880047379.01.T01:CDS
GAATCAAGCTAGGGTTGACG+TGG 0.682564 8:+85483829 MsG0880047379.01.T01:CDS
TGATTCGAGAGTTTATCATG+AGG 0.688959 8:-85483566 None:intergenic
GAAAGCGGCATGGACTAAGG+CGG 0.690215 8:+85484066 MsG0880047379.01.T01:CDS
TGAGTTGGCGAAGAAGAAAG+CGG 0.696012 8:+85484051 MsG0880047379.01.T01:CDS
AGACGGTGCAAGATTGACCA+GGG 0.716272 8:-85483400 None:intergenic
CATCAAGTAATCCCTTAGAG+CGG 0.718284 8:-85484710 None:intergenic
CCATGGTCATCGAAGCAGCG+AGG 0.728643 8:-85483634 None:intergenic
TCATGAACAGTGTTAAACAG+TGG 0.809386 8:-85484898 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTTTATTTTTTTAAGTAT+TGG + Chr8:85484425-85484444 MsG0880047379.01.T01:intron 10.0%
!! ATGAATATTTCTCATATTTA+GGG + Chr8:85483783-85483802 MsG0880047379.01.T01:CDS 15.0%
!! TGTAAAATTGTAAATGAAAT+TGG - Chr8:85485256-85485275 None:intergenic 15.0%
!!! ATTAATACTTCAATATCTTT+TGG + Chr8:85484312-85484331 MsG0880047379.01.T01:intron 15.0%
!! ATGAAAAATTAGCATACTTA+TGG - Chr8:85485142-85485161 None:intergenic 20.0%
!! CATGAATATTTCTCATATTT+AGG + Chr8:85483782-85483801 MsG0880047379.01.T01:CDS 20.0%
!! TGCTAAATTACCAAAATAAA+AGG - Chr8:85485023-85485042 None:intergenic 20.0%
! AAAAGTAAAACAGAACAAGT+AGG + Chr8:85484381-85484400 MsG0880047379.01.T01:intron 25.0%
! AAGATTAGTATTTGGACTAA+TGG + Chr8:85484799-85484818 MsG0880047379.01.T01:CDS 25.0%
! TTAGTCCAAATACTAATCTT+AGG - Chr8:85484799-85484818 None:intergenic 25.0%
! TTATCAATTTAGCGTATTTG+AGG - Chr8:85483544-85483563 None:intergenic 25.0%
! TTGAACCTAAGATTAGTATT+TGG + Chr8:85484791-85484810 MsG0880047379.01.T01:CDS 25.0%
!! CATTTACAATTTTACATGCT+TGG + Chr8:85485260-85485279 MsG0880047379.01.T01:three_prime_UTR 25.0%
!! GTATGCTAATTTTTCATGTA+TGG + Chr8:85485145-85485164 MsG0880047379.01.T01:three_prime_UTR 25.0%
!!! AGTAGTAGTACCTTTTATTT+TGG + Chr8:85485010-85485029 MsG0880047379.01.T01:three_prime_UTR 25.0%
!!! TTAAGTATTGGTTGAAATTC+TGG + Chr8:85484437-85484456 MsG0880047379.01.T01:intron 25.0%
AAATATGACAGTATCAAGCA+TGG - Chr8:85485191-85485210 None:intergenic 30.0%
AAGCATAATCAACAATGTAC+AGG + Chr8:85483297-85483316 MsG0880047379.01.T01:exon 30.0%
AGCATAATCAACAATGTACA+GGG + Chr8:85483298-85483317 MsG0880047379.01.T01:exon 30.0%
ATTAGGAGGATTCAAGTATT+AGG + Chr8:85484978-85484997 MsG0880047379.01.T01:exon 30.0%
ATTAGTATTTGGACTAATGG+AGG + Chr8:85484802-85484821 MsG0880047379.01.T01:CDS 30.0%
CATGTATGGCACAAAAATAA+TGG + Chr8:85485159-85485178 MsG0880047379.01.T01:three_prime_UTR 30.0%
TAGGTTGTATACTAGATGAA+TGG + Chr8:85484400-85484419 MsG0880047379.01.T01:intron 30.0%
TAGTGTTCAATATGAAACCA+AGG + Chr8:85484216-85484235 MsG0880047379.01.T01:CDS 30.0%
TATGAGAAATATTCATGACC+AGG - Chr8:85483779-85483798 None:intergenic 30.0%
TCAAACTTGCAAAGAAATCA+TGG + Chr8:85483372-85483391 MsG0880047379.01.T01:CDS 30.0%
TGAAAGGAGTTATATTTGCA+TGG - Chr8:85484247-85484266 None:intergenic 30.0%
! AGGGATTACTTGATGATAAA+TGG + Chr8:85484718-85484737 MsG0880047379.01.T01:CDS 30.0%
! CATGCTTGGTATTTTATGAA+TGG + Chr8:85485094-85485113 MsG0880047379.01.T01:three_prime_UTR 30.0%
! GATTACTTGATGATAAATGG+TGG + Chr8:85484721-85484740 MsG0880047379.01.T01:CDS 30.0%
! TCCTAATTAAGCACTTTTGT+CGG - Chr8:85484965-85484984 None:intergenic 30.0%
! TGAAGTTGGTTCAAAATCTA+GGG + Chr8:85483871-85483890 MsG0880047379.01.T01:CDS 30.0%
! TGCTTGATACTGTCATATTT+TGG + Chr8:85485191-85485210 MsG0880047379.01.T01:three_prime_UTR 30.0%
AAGTTTGATGTCTTCGATTC+CGG - Chr8:85483360-85483379 None:intergenic 35.0%
ATTCGAGAGTTTATCATGAG+GGG - Chr8:85483567-85483586 None:intergenic 35.0%
CAAAGAAAAAAGAGGCAGAA+GGG + Chr8:85484617-85484636 MsG0880047379.01.T01:CDS 35.0%
GATTCGAGAGTTTATCATGA+GGG - Chr8:85483568-85483587 None:intergenic 35.0%
GCTATACGCAAAGAAAAAAG+AGG + Chr8:85484609-85484628 MsG0880047379.01.T01:CDS 35.0%
TAAACTCTCGAATCATGTCA+AGG + Chr8:85483574-85483593 MsG0880047379.01.T01:CDS 35.0%
TCAATTTAGCGTATTTGAGG+AGG - Chr8:85483541-85483560 None:intergenic 35.0%
TCATGAACAGTGTTAAACAG+TGG - Chr8:85484901-85484920 None:intergenic 35.0%
TGATTCGAGAGTTTATCATG+AGG - Chr8:85483569-85483588 None:intergenic 35.0%
TTTCATACCCATAGAACCTT+CGG - Chr8:85484848-85484867 None:intergenic 35.0%
! AAGAAATCATGGATTTTCCC+TGG + Chr8:85483383-85483402 MsG0880047379.01.T01:CDS 35.0%
! AAGAACGAAAGGCAGTTTTT+CGG - Chr8:85483474-85483493 None:intergenic 35.0%
! ATATTTGCATGGACTAACCT+TGG - Chr8:85484236-85484255 None:intergenic 35.0%
! ATGCTTTGATGATCGTAAAC+TGG - Chr8:85483283-85483302 None:intergenic 35.0%
! GATACATGTTTCTGATTCAC+TGG + Chr8:85485064-85485083 MsG0880047379.01.T01:three_prime_UTR 35.0%
! GTGAAGTTGGTTCAAAATCT+AGG + Chr8:85483870-85483889 MsG0880047379.01.T01:CDS 35.0%
! TTAAGCACTTTTGTCGGATA+AGG - Chr8:85484959-85484978 None:intergenic 35.0%
!! AACTCGAGTTGAATCAATTC+GGG + Chr8:85483711-85483730 MsG0880047379.01.T01:CDS 35.0%
!! CAACTCGAGTTGAATCAATT+CGG + Chr8:85483710-85483729 MsG0880047379.01.T01:CDS 35.0%
!! GACAAAAGTGCTTAATTAGG+AGG + Chr8:85484964-85484983 MsG0880047379.01.T01:exon 35.0%
!! GGTTTTTGAGAATCAAAGAG+AGG + Chr8:85484006-85484025 MsG0880047379.01.T01:CDS 35.0%
!! GTATTGGTTGAAATTCTGGA+TGG + Chr8:85484441-85484460 MsG0880047379.01.T01:intron 35.0%
!! TCCGACAAAAGTGCTTAATT+AGG + Chr8:85484961-85484980 MsG0880047379.01.T01:exon 35.0%
!!! TCACTGGTTTTTTTCATGCT+TGG + Chr8:85485080-85485099 MsG0880047379.01.T01:three_prime_UTR 35.0%
AACACTGTTCATGAGCAAAC+AGG + Chr8:85484907-85484926 MsG0880047379.01.T01:CDS 40.0%
AGCAGTTCTGTATGAGAAGA+AGG + Chr8:85484516-85484535 MsG0880047379.01.T01:CDS 40.0%
AGGTTCTATGGGTATGAAAG+AGG + Chr8:85484849-85484868 MsG0880047379.01.T01:CDS 40.0%
AGTACACTTCTCAATGCACT+TGG + Chr8:85484676-85484695 MsG0880047379.01.T01:CDS 40.0%
CAACGCGAATGTTAAGCAAT+TGG + Chr8:85483745-85483764 MsG0880047379.01.T01:CDS 40.0%
CATCAAGTAATCCCTTAGAG+CGG - Chr8:85484713-85484732 None:intergenic 40.0%
GAAAGTTATTGCGATGCAGA+GGG + Chr8:85483937-85483956 MsG0880047379.01.T01:CDS 40.0%
GATGGCTAAGATTAATGCTG+AGG + Chr8:85484756-85484775 MsG0880047379.01.T01:CDS 40.0%
GCAAAGAAAAAAGAGGCAGA+AGG + Chr8:85484616-85484635 MsG0880047379.01.T01:CDS 40.0%
GCTAAGATGAAAGGTGAAGT+TGG + Chr8:85483857-85483876 MsG0880047379.01.T01:CDS 40.0%
GGAATAACCGAAGGTTCTAT+GGG + Chr8:85484838-85484857 MsG0880047379.01.T01:CDS 40.0%
GTTGAAATTCTGGATGGTGT+AGG + Chr8:85484447-85484466 MsG0880047379.01.T01:intron 40.0%
TAGAGTTAGGACTGAAGTGA+AGG + Chr8:85483985-85484004 MsG0880047379.01.T01:CDS 40.0%
TGAACAGTGTTAAACAGTGG+TGG - Chr8:85484898-85484917 None:intergenic 40.0%
! ACCATGGAAGAGGTTTTCAA+AGG + Chr8:85483650-85483669 MsG0880047379.01.T01:CDS 40.0%
! ACTTCGAAGGTATAGTTCAC+CGG - Chr8:85483437-85483456 None:intergenic 40.0%
! GTTGGTTCAAAATCTAGGGA+AGG + Chr8:85483875-85483894 MsG0880047379.01.T01:CDS 40.0%
! TCCTTTGAAAACCTCTTCCA+TGG - Chr8:85483654-85483673 None:intergenic 40.0%
ACGAGGACCAATTGTGAAGA+CGG - Chr8:85483501-85483520 None:intergenic 45.0%
ACTCATGGCTTGAACTTCGA+AGG - Chr8:85483450-85483469 None:intergenic 45.0%
ATGGGTATGAAAGAGGTTGC+TGG + Chr8:85484856-85484875 MsG0880047379.01.T01:CDS 45.0%
ATTAATGCTGAGGCAGTACG+TGG + Chr8:85484766-85484785 MsG0880047379.01.T01:CDS 45.0%
CATGTCAAGGAACTCGTTCA+AGG + Chr8:85483587-85483606 MsG0880047379.01.T01:CDS 45.0%
CGAAAGTTATTGCGATGCAG+AGG + Chr8:85483936-85483955 MsG0880047379.01.T01:CDS 45.0%
CGCGAATGTTAAGCAATTGG+TGG + Chr8:85483748-85483767 MsG0880047379.01.T01:CDS 45.0%
CGGAATAACCGAAGGTTCTA+TGG + Chr8:85484837-85484856 MsG0880047379.01.T01:CDS 45.0%
CTCGTTCAAGGAATCATCGA+AGG + Chr8:85483599-85483618 MsG0880047379.01.T01:CDS 45.0%
GAATCAAAGAGAGGCTGAAG+TGG + Chr8:85484015-85484034 MsG0880047379.01.T01:CDS 45.0%
GCAGAAGGGATTGTGACAAT+TGG + Chr8:85484631-85484650 MsG0880047379.01.T01:CDS 45.0%
GTAGGTACAAGAGGCTAACT+GGG + Chr8:85484465-85484484 MsG0880047379.01.T01:intron 45.0%
GTGACAATTGGACAAGCTCA+AGG + Chr8:85484643-85484662 MsG0880047379.01.T01:CDS 45.0%
GTGGCAGAAGCTAAGATGAA+AGG + Chr8:85483848-85483867 MsG0880047379.01.T01:CDS 45.0%
TCCGAGTACCTTGTGATAAC+CGG + Chr8:85483332-85483351 MsG0880047379.01.T01:CDS 45.0%
TCTGTATGAGAAGAAGGCAG+AGG + Chr8:85484522-85484541 MsG0880047379.01.T01:CDS 45.0%
TGGTGGCATGTTTCAAGAGA+TGG + Chr8:85484738-85484757 MsG0880047379.01.T01:CDS 45.0%
TGTAGGTACAAGAGGCTAAC+TGG + Chr8:85484464-85484483 MsG0880047379.01.T01:intron 45.0%
! ACAAGGAGGGGTTTAGAGTT+AGG + Chr8:85483972-85483991 MsG0880047379.01.T01:CDS 45.0%
! TCCGGTTATCACAAGGTACT+CGG - Chr8:85483336-85483355 None:intergenic 45.0%
! TGAGTTGGCGAAGAAGAAAG+CGG + Chr8:85484051-85484070 MsG0880047379.01.T01:CDS 45.0%
! TTTAGGGCAAAAGACGCAGA+TGG + Chr8:85483799-85483818 MsG0880047379.01.T01:CDS 45.0%
!! TGCTAAAGCTGTGGCTCTAA+GGG + Chr8:85484111-85484130 MsG0880047379.01.T01:CDS 45.0%
!! AATAATAATTAATAAATGAA+AGG - Chr8:85484263-85484282 None:intergenic 5.0%
AAGACGGCAGGAAGAACGAA+AGG - Chr8:85483485-85483504 None:intergenic 50.0%
AAGACGGTGCAAGATTGACC+AGG - Chr8:85483404-85483423 None:intergenic 50.0%
AAGCGACTACACCGCTCTAA+GGG + Chr8:85484699-85484718 MsG0880047379.01.T01:CDS 50.0%
AATGGAGGCGGAATAACCGA+AGG + Chr8:85484829-85484848 MsG0880047379.01.T01:CDS 50.0%
ACTAATGGAGGCGACAATGG+AGG + Chr8:85484814-85484833 MsG0880047379.01.T01:CDS 50.0%
AGACGGTGCAAGATTGACCA+GGG - Chr8:85483403-85483422 None:intergenic 50.0%
AGGTATAGTTCACCGGTGAG+AGG - Chr8:85483430-85483449 None:intergenic 50.0%
AGTTGCAAGGTGAGGTTGAG+AGG + Chr8:85484140-85484159 MsG0880047379.01.T01:CDS 50.0%
ATGTTGCCTCCTGCTTGGAT+GGG + Chr8:85484931-85484950 MsG0880047379.01.T01:CDS 50.0%
CGTATTTGAGGAGGCTTTCG+TGG - Chr8:85483532-85483551 None:intergenic 50.0%
CTAAGGGAAGCTGAGTTGCA+AGG + Chr8:85484127-85484146 MsG0880047379.01.T01:CDS 50.0%
CTGGATGGTGTAGGTACAAG+AGG + Chr8:85484456-85484475 MsG0880047379.01.T01:intron 50.0%
CTTCCTGCCGTCTTCACAAT+TGG + Chr8:85483491-85483510 MsG0880047379.01.T01:CDS 50.0%
GAATCAAGCTAGGGTTGACG+TGG + Chr8:85483829-85483848 MsG0880047379.01.T01:CDS 50.0%
GATAAGGTTCCCATCCAAGC+AGG - Chr8:85484943-85484962 None:intergenic 50.0%
GGAAGCAGCGAATCAAGCTA+GGG + Chr8:85483820-85483839 MsG0880047379.01.T01:CDS 50.0%
TACCTTGTGATAACCGGAGC+CGG + Chr8:85483338-85483357 MsG0880047379.01.T01:CDS 50.0%
TGCTTCGATGACCATGGAAG+AGG + Chr8:85483640-85483659 MsG0880047379.01.T01:CDS 50.0%
TGGAAGCAGCGAATCAAGCT+AGG + Chr8:85483819-85483838 MsG0880047379.01.T01:CDS 50.0%
TGGACTAATGGAGGCGACAA+TGG + Chr8:85484811-85484830 MsG0880047379.01.T01:CDS 50.0%
! AAGCAATTGGTGGATGTGCC+TGG + Chr8:85483758-85483777 MsG0880047379.01.T01:CDS 50.0%
! CTGCTAAAGCTGTGGCTCTA+AGG + Chr8:85484110-85484129 MsG0880047379.01.T01:CDS 50.0%
! GAAGAAAGCGGCATGGACTA+AGG + Chr8:85484063-85484082 MsG0880047379.01.T01:CDS 50.0%
! GGCAGAAGCACAGAAAGCAT+TGG + Chr8:85484543-85484562 MsG0880047379.01.T01:CDS 50.0%
!! AGGCAGTTTTTCGGCACTCA+TGG - Chr8:85483465-85483484 None:intergenic 50.0%
AAGAGAGGCTGAAGTGGCTG+AGG + Chr8:85484021-85484040 MsG0880047379.01.T01:CDS 55.0%
AAGGTTCCCATCCAAGCAGG+AGG - Chr8:85484940-85484959 None:intergenic 55.0%
AATGGAGGCGACAATGGAGG+CGG + Chr8:85484817-85484836 MsG0880047379.01.T01:CDS 55.0%
AGTCGAGGCTGCTAAAGCTG+TGG + Chr8:85484102-85484121 MsG0880047379.01.T01:CDS 55.0%
CATGTTGCCTCCTGCTTGGA+TGG + Chr8:85484930-85484949 MsG0880047379.01.T01:CDS 55.0%
CTGGAGAGAGTGACAAGGAG+GGG + Chr8:85483960-85483979 MsG0880047379.01.T01:CDS 55.0%
CTTTCGTGGTCGTCAACACG+AGG - Chr8:85483518-85483537 None:intergenic 55.0%
GAAGCGACTACACCGCTCTA+AGG + Chr8:85484698-85484717 MsG0880047379.01.T01:CDS 55.0%
GATGTCTTCGATTCCGGCTC+CGG - Chr8:85483354-85483373 None:intergenic 55.0%
GCTGGAGAGAGTGACAAGGA+GGG + Chr8:85483959-85483978 MsG0880047379.01.T01:CDS 55.0%
GGAAGCTGAGTTGCAAGGTG+AGG + Chr8:85484132-85484151 MsG0880047379.01.T01:CDS 55.0%
GGACCAATTGTGAAGACGGC+AGG - Chr8:85483497-85483516 None:intergenic 55.0%
GGCTGAGGCTAATGCTGAGT+TGG + Chr8:85484036-85484055 MsG0880047379.01.T01:CDS 55.0%
GTTATTGCGATGCAGAGGGC+TGG + Chr8:85483941-85483960 MsG0880047379.01.T01:CDS 55.0%
TGGCGAAGAAGAAAGCGGCA+TGG + Chr8:85484056-85484075 MsG0880047379.01.T01:CDS 55.0%
TTCCGGCTCCGGTTATCACA+AGG - Chr8:85483343-85483362 None:intergenic 55.0%
! ATGGACTAAGGCGGCTCAAG+TGG + Chr8:85484075-85484094 MsG0880047379.01.T01:CDS 55.0%
! GAAAGCGGCATGGACTAAGG+CGG + Chr8:85484066-85484085 MsG0880047379.01.T01:CDS 55.0%
CACCGGTGAGAGGTCGAAGA+CGG - Chr8:85483420-85483439 None:intergenic 60.0%
CACCGTCTTCGACCTCTCAC+CGG + Chr8:85483415-85483434 MsG0880047379.01.T01:CDS 60.0%
CAGGCATGTTGCCTCCTGCT+TGG + Chr8:85484926-85484945 MsG0880047379.01.T01:CDS 60.0%
CCATGGTCATCGAAGCAGCG+AGG - Chr8:85483637-85483656 None:intergenic 60.0%
CCTCGCTGCTTCGATGACCA+TGG + Chr8:85483634-85483653 MsG0880047379.01.T01:CDS 60.0%
GAGGGCTGGAGAGAGTGACA+AGG + Chr8:85483955-85483974 MsG0880047379.01.T01:CDS 60.0%
GGCTCAAGTGGCTGAAGTCG+AGG + Chr8:85484087-85484106 MsG0880047379.01.T01:CDS 60.0%
GGCTGGAGAGAGTGACAAGG+AGG + Chr8:85483958-85483977 MsG0880047379.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 85483213 85485304 85483213 ID=MsG0880047379.01;Name=MsG0880047379.01
Chr8 mRNA 85483213 85485304 85483213 ID=MsG0880047379.01.T01;Parent=MsG0880047379.01;Name=MsG0880047379.01.T01;_AED=0.01;_eAED=0.01;_QI=98|1|1|1|1|1|2|326|478
Chr8 exon 85483213 85484237 85483213 ID=MsG0880047379.01.T01:exon:15455;Parent=MsG0880047379.01.T01
Chr8 exon 85484469 85485304 85484469 ID=MsG0880047379.01.T01:exon:15456;Parent=MsG0880047379.01.T01
Chr8 five_prime_UTR 85483213 85483310 85483213 ID=MsG0880047379.01.T01:five_prime_utr;Parent=MsG0880047379.01.T01
Chr8 CDS 85483311 85484237 85483311 ID=MsG0880047379.01.T01:cds;Parent=MsG0880047379.01.T01
Chr8 CDS 85484469 85484978 85484469 ID=MsG0880047379.01.T01:cds;Parent=MsG0880047379.01.T01
Chr8 three_prime_UTR 85484979 85485304 85484979 ID=MsG0880047379.01.T01:three_prime_utr;Parent=MsG0880047379.01.T01
Gene Sequence

>MsG0880047379.01.T01

ATGTACAGGGTTGCAAAAGCATCCGAGTACCTTGTGATAACCGGAGCCGGAATCGAAGACATCAAACTTGCAAAGAAATCATGGATTTTCCCTGGTCAATCTTGCACCGTCTTCGACCTCTCACCGGTGAACTATACCTTCGAAGTTCAAGCCATGAGTGCCGAAAAACTGCCTTTCGTTCTTCCTGCCGTCTTCACAATTGGTCCTCGTGTTGACGACCACGAAAGCCTCCTCAAATACGCTAAATTGATAACCCCTCATGATAAACTCTCGAATCATGTCAAGGAACTCGTTCAAGGAATCATCGAAGGCGAGACACGTGTCCTCGCTGCTTCGATGACCATGGAAGAGGTTTTCAAAGGAACAAAAGAGTTTAAACAAGAAGTATTCGAGAAAGTTCAACTCGAGTTGAATCAATTCGGGTTATTGATTTACAACGCGAATGTTAAGCAATTGGTGGATGTGCCTGGTCATGAATATTTCTCATATTTAGGGCAAAAGACGCAGATGGAAGCAGCGAATCAAGCTAGGGTTGACGTGGCAGAAGCTAAGATGAAAGGTGAAGTTGGTTCAAAATCTAGGGAAGGACAAACACTGCAGAATGCAGCAAAAATTGACGCAGAGACGAAAGTTATTGCGATGCAGAGGGCTGGAGAGAGTGACAAGGAGGGGTTTAGAGTTAGGACTGAAGTGAAGGTTTTTGAGAATCAAAGAGAGGCTGAAGTGGCTGAGGCTAATGCTGAGTTGGCGAAGAAGAAAGCGGCATGGACTAAGGCGGCTCAAGTGGCTGAAGTCGAGGCTGCTAAAGCTGTGGCTCTAAGGGAAGCTGAGTTGCAAGGTGAGGTTGAGAGGATGAATGCTTTGACTACTACTGAGAAGCTTAAAGCTGATTTACTTAGCAAAGCTAGTGTTCAATATGAAACCAAGGTACAAGAGGCTAACTGGGAATTATACAAGAAACAAAAAGAAGCAGAAGCAGTTCTGTATGAGAAGAAGGCAGAGGCAGAAGCACAGAAAGCATTGGCAGATGCAACATTTTATGCGCGCAAGCAAGCAGCTGAAGCAGAGCTATACGCAAAGAAAAAAGAGGCAGAAGGGATTGTGACAATTGGACAAGCTCAAGGAGTGTATGTAAGTACACTTCTCAATGCACTTGGAAGCGACTACACCGCTCTAAGGGATTACTTGATGATAAATGGTGGCATGTTTCAAGAGATGGCTAAGATTAATGCTGAGGCAGTACGTGGACTTGAACCTAAGATTAGTATTTGGACTAATGGAGGCGACAATGGAGGCGGAATAACCGAAGGTTCTATGGGTATGAAAGAGGTTGCTGGTGTTTACAAGATGCTGCCACCACTGTTTAACACTGTTCATGAGCAAACAGGCATGTTGCCTCCTGCTTGGATGGGAACCTTATCCGACAAAAGTGCTTAA
Protein sequence

>MsG0880047379.01.T01

MYRVAKASEYLVITGAGIEDIKLAKKSWIFPGQSCTVFDLSPVNYTFEVQAMSAEKLPFVLPAVFTIGPRVDDHESLLKYAKLITPHDKLSNHVKELVQGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANVKQLVDVPGHEYFSYLGQKTQMEAANQARVDVAEAKMKGEVGSKSREGQTLQNAAKIDAETKVIAMQRAGESDKEGFRVRTEVKVFENQREAEVAEANAELAKKKAAWTKAAQVAEVEAAKAVALREAELQGEVERMNALTTTEKLKADLLSKASVQYETKVQEANWELYKKQKEAEAVLYEKKAEAEAQKALADATFYARKQAAEAELYAKKKEAEGIVTIGQAQGVYVSTLLNALGSDYTALRDYLMINGGMFQEMAKINAEAVRGLEPKISIWTNGGDNGGGITEGSMGMKEVAGVYKMLPPLFNTVHEQTGMLPPAWMGTLSDKSA*