AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180006118.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006118.01.T01 MTR_1g073400 96.444 478 13 1 1 478 1 474 0.0 935
MsG0180006118.01.T01 MTR_1g115145 95.407 479 15 3 1 478 1 473 0.0 914
MsG0180006118.01.T01 MTR_3g106480 92.259 478 37 0 1 478 1 478 0.0 907
MsG0180006118.01.T01 MTR_1g071130 91.213 478 13 2 1 478 1 449 0.0 881
MsG0180006118.01.T01 MTR_3g106485 92.469 478 32 1 1 478 1 474 0.0 876
MsG0180006118.01.T01 MTR_3g106420 91.841 478 39 0 1 478 3 480 0.0 873
MsG0180006118.01.T01 MTR_3g106430 91.614 477 36 1 1 477 1 473 0.0 837
MsG0180006118.01.T01 MTR_1g083190 89.331 478 43 1 1 478 3 472 0.0 837
MsG0180006118.01.T01 MTR_3g106470 81.342 477 33 2 1 477 32 452 0.0 739
MsG0180006118.01.T01 MTR_8g063830 80.860 465 48 5 1 464 1 425 0.0 676
MsG0180006118.01.T01 MTR_3g065540 65.217 115 13 1 40 154 14 101 6.87e-41 142
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006118.01.T01 AT5G25260 75.105 474 106 2 1 474 1 462 0.0 735
MsG0180006118.01.T01 AT5G25250 75.053 473 104 2 1 473 1 459 0.0 728
MsG0180006118.01.T01 AT5G64870 71.610 472 123 1 2 473 3 463 0.0 660

Find 123 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAATATTTCTCATATTT+AGG 0.103276 1:-100318855 MsG0180006118.01.T01:CDS
TCAACACTAAACAATAATTT+TGG 0.197142 1:+100317398 None:intergenic
TTGAACCTAAGATTAGTATT+TGG 0.251111 1:-100317835 MsG0180006118.01.T01:CDS
CTGCTAAAGCTGTGGCTCTA+AGG 0.272737 1:-100318527 MsG0180006118.01.T01:CDS
CAAAATAGTCGAAGGTTCTA+TGG 0.275996 1:-100317789 MsG0180006118.01.T01:CDS
AGGGATTACTTGATGATAAA+TGG 0.295084 1:-100317908 MsG0180006118.01.T01:CDS
GTGAAGTTGGTTCGAAATCT+AGG 0.296293 1:-100318767 MsG0180006118.01.T01:CDS
TCCGACAAAAGCTCTTTATT+AGG 0.298901 1:-100317665 MsG0180006118.01.T01:CDS
ATGAATATTTCTCATATTTA+GGG 0.304701 1:-100318854 MsG0180006118.01.T01:CDS
TTAGTCCAAATACTAATCTT+AGG 0.318195 1:+100317830 None:intergenic
ATTAGGAGGATGCAAGTATT+AGG 0.329639 1:-100317648 MsG0180006118.01.T01:exon
ACAAGGAGGGATTTAGAGTT+AGG 0.330276 1:-100318665 MsG0180006118.01.T01:CDS
TGTAGGTACAAGAGGCTAAC+TGG 0.334134 1:-100318162 MsG0180006118.01.T01:intron
CATGTTGCCTCCTGCTTGGA+TGG 0.342126 1:-100317696 MsG0180006118.01.T01:CDS
GTTTCAAAATTAACAAATAA+AGG 0.342135 1:-100317324 MsG0180006118.01.T01:three_prime_UTR
CAACTCGAGTTGAATCAATT+CGG 0.347216 1:-100318927 MsG0180006118.01.T01:CDS
GAAACGACTACACAGCTCTA+AGG 0.361629 1:-100317928 MsG0180006118.01.T01:CDS
AAGATTAGTATTTGGACTAA+TGG 0.361897 1:-100317827 MsG0180006118.01.T01:CDS
TTTGCTACCCTGTACATTGT+TGG 0.364596 1:+100319332 None:intergenic
CAATGCGAATGTTAAGCAAT+TGG 0.388576 1:-100318892 MsG0180006118.01.T01:CDS
AAGTTTGATGTCTTCGATTC+CGG 0.389998 1:+100319280 None:intergenic
GATGTCTTCGATTCCGGCTC+CGG 0.392612 1:+100319286 None:intergenic
GTACAAAAGTAATGTCAATT+TGG 0.395760 1:-100317482 MsG0180006118.01.T01:three_prime_UTR
ATCAAAATCCAACAATGTAC+AGG 0.419506 1:-100319340 MsG0180006118.01.T01:exon
AAGCAATTGGTGGATGTGCC+TGG 0.422566 1:-100318879 MsG0180006118.01.T01:CDS
CTTCCTGCGGTCTTCACAAT+CGG 0.430548 1:-100319146 MsG0180006118.01.T01:CDS
TCCGAGTACCTGGTGATAAC+CGG 0.437519 1:-100319305 MsG0180006118.01.T01:CDS
AACTCGAGTTGAATCAATTC+GGG 0.439303 1:-100318926 MsG0180006118.01.T01:CDS
GAAGAAAGCGGCTTGGACTA+AGG 0.439534 1:-100318574 MsG0180006118.01.T01:CDS
TCAAACTTGCAAAGAAATCA+TGG 0.455886 1:-100319265 MsG0180006118.01.T01:CDS
AGCAATTCTGTACGAGAAGA+AGG 0.472126 1:-100318110 MsG0180006118.01.T01:CDS
AAATCAGTTTAGCGTATTTG+AGG 0.473661 1:+100319096 None:intergenic
TTTAGGGCAAAAGACGCAAA+TGG 0.491891 1:-100318838 MsG0180006118.01.T01:CDS
AAGACTGTCCATGAGCAAAC+AGG 0.492575 1:-100317719 MsG0180006118.01.T01:CDS
TCCTTTGAAAACCTCTTCCA+TGG 0.499133 1:+100318986 None:intergenic
TGGAAGCAGCGAATCAAGCT+AGG 0.499263 1:-100318818 MsG0180006118.01.T01:CDS
CGAAAGTTATTGCGATGCAG+AGG 0.499935 1:-100318701 MsG0180006118.01.T01:CDS
TGCTAAAGCTGTGGCTCTAA+GGG 0.501192 1:-100318526 MsG0180006118.01.T01:CDS
CAGGCATGTTGCCTCCTGCT+TGG 0.503335 1:-100317700 MsG0180006118.01.T01:CDS
TGCTTCGATGACCATGGAAG+AGG 0.508530 1:-100318997 MsG0180006118.01.T01:CDS
AGCAAAAGCATCCGAGTACC+TGG 0.509436 1:-100319315 MsG0180006118.01.T01:CDS
GCTAAGATGAAAGGTGAAGT+TGG 0.511842 1:-100318780 MsG0180006118.01.T01:CDS
GTTATTGCGATGCAGAGGGC+TGG 0.513050 1:-100318696 MsG0180006118.01.T01:CDS
TAGAGTTAGGACTGAAGTGA+AGG 0.517399 1:-100318652 MsG0180006118.01.T01:CDS
GACAAAAGCTCTTTATTAGG+AGG 0.519429 1:-100317662 MsG0180006118.01.T01:CDS
GCAACATGCCTGTTTGCTCA+TGG 0.521020 1:+100317711 None:intergenic
ATGTTGCCTCCTGCTTGGAT+GGG 0.522936 1:-100317695 MsG0180006118.01.T01:CDS
CTCGTTCAAGGAATCATTGA+AGG 0.526317 1:-100319038 MsG0180006118.01.T01:CDS
ATGGGTATGAAAGAGGTTGC+TGG 0.526365 1:-100317770 MsG0180006118.01.T01:CDS
GCAGAGGGGATCGTGACACT+TGG 0.529940 1:-100317995 MsG0180006118.01.T01:CDS
TGATTTAACTTGCCATAAGT+AGG 0.532017 1:-100317522 MsG0180006118.01.T01:three_prime_UTR
ATTAGTATTTGGACTAATGG+AGG 0.534214 1:-100317824 MsG0180006118.01.T01:CDS
CACGTCAAGGAACTCGTTCA+AGG 0.535434 1:-100319050 MsG0180006118.01.T01:CDS
TGGTGGCATGTTTCAAGAGA+TGG 0.539247 1:-100317888 MsG0180006118.01.T01:CDS
TCCGGTTATCACCAGGTACT+CGG 0.539596 1:+100319304 None:intergenic
TGCTCAAGTGGCTGAAGTTG+AGG 0.540016 1:-100318550 MsG0180006118.01.T01:CDS
GGCTGAGGCTAATTCTGAGT+TGG 0.544080 1:-100318601 MsG0180006118.01.T01:CDS
CTTGAACGAGTTCCTTGACG+TGG 0.546546 1:+100319051 None:intergenic
TATGAGAAATATTCATGCCC+AGG 0.547602 1:+100318861 None:intergenic
CACCGTCTTCGACCTCTCAC+CGG 0.548854 1:-100319222 MsG0180006118.01.T01:CDS
GATAAGGTTCCCATCCAAGC+AGG 0.550974 1:+100317686 None:intergenic
TTGGACTAAGGCTGCTCAAG+TGG 0.551989 1:-100318562 MsG0180006118.01.T01:CDS
TTCCGGCTCCGGTTATCACC+AGG 0.552313 1:+100319297 None:intergenic
ACTTCGAAGGTGTAGTTCAC+CGG 0.556605 1:+100319203 None:intergenic
AAAATAGTCGAAGGTTCTAT+GGG 0.558316 1:-100317788 MsG0180006118.01.T01:CDS
AAGAGAGGCTGAAGTGGCTG+AGG 0.558698 1:-100318616 MsG0180006118.01.T01:CDS
TGCGAATGTTAAGCAATTGG+TGG 0.563120 1:-100318889 MsG0180006118.01.T01:CDS
GTAGGTACAAGAGGCTAACT+GGG 0.564807 1:-100318161 MsG0180006118.01.T01:intron
AGGTTCTATGGGTATGAAAG+AGG 0.567548 1:-100317777 MsG0180006118.01.T01:CDS
TACCTGGTGATAACCGGAGC+CGG 0.568923 1:-100319299 MsG0180006118.01.T01:CDS
AGTACACTTCTCAATGCACT+TGG 0.570595 1:-100317950 MsG0180006118.01.T01:CDS
CCTCGCTGCTTCGATGACCA+TGG 0.570615 1:-100319003 MsG0180006118.01.T01:CDS
CTGGATGGTGTAGGTACAAG+AGG 0.571024 1:-100318170 MsG0180006118.01.T01:intron
TGAAGTTGGTTCGAAATCTA+GGG 0.572755 1:-100318766 MsG0180006118.01.T01:CDS
AAGACGGTGCAAGATTGACC+AGG 0.574032 1:+100319236 None:intergenic
CAATTTGGTCACTGAGACTG+TGG 0.574566 1:-100317467 MsG0180006118.01.T01:three_prime_UTR
AGCAATTGGTGGATGTGCCT+GGG 0.578490 1:-100318878 MsG0180006118.01.T01:CDS
GGCAGAAGCACAGAAAGCAT+TGG 0.582553 1:-100318083 MsG0180006118.01.T01:CDS
TGGCGAAGAAGAAAGCGGCT+TGG 0.584288 1:-100318581 MsG0180006118.01.T01:CDS
ACTCATGGCTTGAACTTCGA+AGG 0.586153 1:+100319190 None:intergenic
ACTGCCTTTCGTTCTTCCTG+CGG 0.586208 1:-100319159 MsG0180006118.01.T01:CDS
TCAGTTTAGCGTATTTGAGG+AGG 0.587438 1:+100319099 None:intergenic
GAATCAAAGAGAGGCTGAAG+TGG 0.589954 1:-100318622 MsG0180006118.01.T01:CDS
GGTTCGAGAGTTTATCATGA+GGG 0.591190 1:+100319072 None:intergenic
GGACCGATTGTGAAGACCGC+AGG 0.592140 1:+100319143 None:intergenic
AAACGACTACACAGCTCTAA+GGG 0.592700 1:-100317927 MsG0180006118.01.T01:CDS
TCTGTACGAGAAGAAGGCAG+AGG 0.600808 1:-100318104 MsG0180006118.01.T01:CDS
TGGACTAATGGAGGTGACAA+TGG 0.609237 1:-100317815 MsG0180006118.01.T01:CDS
GCTGGAGAGAGTGACAAGGA+GGG 0.609527 1:-100318678 MsG0180006118.01.T01:CDS
AGTTGCAAGGTGAGGTTGAG+AGG 0.610701 1:-100318497 MsG0180006118.01.T01:CDS
GTGACACTTGGAAATGCTCA+AGG 0.613316 1:-100317983 MsG0180006118.01.T01:CDS
CTAAGGGAAGCTGAGTTGCA+AGG 0.613783 1:-100318510 MsG0180006118.01.T01:CDS
GAATCAAGCTAGGGTTGATG+TGG 0.625479 1:-100318808 MsG0180006118.01.T01:CDS
GGCTGGAGAGAGTGACAAGG+AGG 0.627665 1:-100318679 MsG0180006118.01.T01:CDS
CACCGGTGAGAGGTCGAAGA+CGG 0.628279 1:+100319220 None:intergenic
GGAAGCAGCGAATCAAGCTA+GGG 0.630802 1:-100318817 MsG0180006118.01.T01:CDS
GAAAGTTATTGCGATGCAGA+GGG 0.631337 1:-100318700 MsG0180006118.01.T01:CDS
GTTCGAGAGTTTATCATGAG+GGG 0.631767 1:+100319073 None:intergenic
AGGTGTAGTTCACCGGTGAG+AGG 0.633284 1:+100319210 None:intergenic
TGGTCACTGAGACTGTGGTA+TGG 0.638229 1:-100317462 MsG0180006118.01.T01:three_prime_UTR
GATGGCTAAGATTAATGCTG+AGG 0.642407 1:-100317870 MsG0180006118.01.T01:CDS
AAGACCGCAGGAAGAACGAA+AGG 0.642924 1:+100319155 None:intergenic
AATGGAGGCAAAATAGTCGA+AGG 0.643742 1:-100317797 MsG0180006118.01.T01:CDS
GAGGGCTGGAGAGAGTGACA+AGG 0.646522 1:-100318682 MsG0180006118.01.T01:CDS
TCAAAATCCAACAATGTACA+GGG 0.647397 1:-100319339 MsG0180006118.01.T01:exon
GGAAGCTGAGTTGCAAGGTG+AGG 0.648282 1:-100318505 MsG0180006118.01.T01:CDS
TAGTGTTCAATATGAAACCA+AGG 0.651992 1:-100318421 MsG0180006118.01.T01:intron
TGAGTTGGCGAAGAAGAAAG+CGG 0.653130 1:-100318586 MsG0180006118.01.T01:CDS
TGGACAGTCTTAAACAGAGG+TGG 0.656626 1:+100317731 None:intergenic
ATTAATGCTGAGGCAGTACG+TGG 0.657117 1:-100317860 MsG0180006118.01.T01:CDS
GATTACTTGATGATAAATGG+TGG 0.658453 1:-100317905 MsG0180006118.01.T01:CDS
TCATGGACAGTCTTAAACAG+AGG 0.660499 1:+100317728 None:intergenic
AAGGTTCCCATCCAAGCAGG+AGG 0.669932 1:+100317689 None:intergenic
GTTGGTTCGAAATCTAGGGA+AGG 0.671440 1:-100318762 MsG0180006118.01.T01:CDS
TAAACTCTCGAACCACGTCA+AGG 0.672629 1:-100319063 MsG0180006118.01.T01:CDS
GTGGCAGAAGCTAAGATGAA+AGG 0.672668 1:-100318789 MsG0180006118.01.T01:CDS
TGGTTCGAGAGTTTATCATG+AGG 0.674541 1:+100319071 None:intergenic
TGAATTACCAAAATAAAACA+AGG 0.675233 1:+100317613 None:intergenic
ACTAATGGAGGTGACAATGG+AGG 0.677352 1:-100317812 MsG0180006118.01.T01:CDS
AGTTGAGGCTGCTAAAGCTG+TGG 0.689875 1:-100318535 MsG0180006118.01.T01:CDS
CTTTCGTGATCGTCAACACG+AGG 0.690352 1:+100319122 None:intergenic
AGACGGTGCAAGATTGACCA+GGG 0.716272 1:+100319237 None:intergenic
CCATGGTCATCGAAGCAGCG+AGG 0.728643 1:+100319003 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAATATTTCTCATATTTA+GGG - Chr1:100317840-100317859 MsG0180006118.01.T01:CDS 15.0%
!! GTTTCAAAATTAACAAATAA+AGG - Chr1:100319370-100319389 MsG0180006118.01.T01:five_prime_UTR 15.0%
!!! AATGTTTATTTTTTAAGTAC+TGG - Chr1:100318493-100318512 MsG0180006118.01.T01:CDS 15.0%
!!! ATTAATACTTCAATATCTTT+TGG - Chr1:100318378-100318397 MsG0180006118.01.T01:intron 15.0%
!!! TTATTTCAATTTTCTTTTCT+AGG - Chr1:100317317-100317336 MsG0180006118.01.T01:three_prime_UTR 15.0%
!! CATGAATATTTCTCATATTT+AGG - Chr1:100317839-100317858 MsG0180006118.01.T01:CDS 20.0%
!! GATTATTGTTTAATATTGCA+TGG - Chr1:100318450-100318469 MsG0180006118.01.T01:CDS 20.0%
!! TGAATTACCAAAATAAAACA+AGG + Chr1:100319084-100319103 None:intergenic 20.0%
!!! TCAACACTAAACAATAATTT+TGG + Chr1:100319299-100319318 None:intergenic 20.0%
!!! TGTTAATTTTGAAACATCAA+TGG + Chr1:100319365-100319384 None:intergenic 20.0%
!!! TTTATTTTTTAAGTACTGGT+TGG - Chr1:100318497-100318516 MsG0180006118.01.T01:CDS 20.0%
! AAGATTAGTATTTGGACTAA+TGG - Chr1:100318867-100318886 MsG0180006118.01.T01:CDS 25.0%
! GTACAAAAGTAATGTCAATT+TGG - Chr1:100319212-100319231 MsG0180006118.01.T01:CDS 25.0%
! TTAGTCCAAATACTAATCTT+AGG + Chr1:100318867-100318886 None:intergenic 25.0%
! TTGAACCTAAGATTAGTATT+TGG - Chr1:100318859-100318878 MsG0180006118.01.T01:CDS 25.0%
!! ATGAAAAATTAGCCTACTTA+TGG + Chr1:100319187-100319206 None:intergenic 25.0%
!! CATGCTTGGTATTTTATAAA+TGG - Chr1:100319134-100319153 MsG0180006118.01.T01:CDS 25.0%
!!! TCACTGTAGTTAAAGTTTTT+TGG - Chr1:100318412-100318431 MsG0180006118.01.T01:intron 25.0%
!!! TTAAAGTTTTTTGGCATACA+TGG - Chr1:100318421-100318440 MsG0180006118.01.T01:intron 25.0%
AAAATAGTCGAAGGTTCTAT+GGG - Chr1:100318906-100318925 MsG0180006118.01.T01:CDS 30.0%
AAATCAGTTTAGCGTATTTG+AGG + Chr1:100317601-100317620 None:intergenic 30.0%
ATCAAAATCCAACAATGTAC+AGG - Chr1:100317354-100317373 MsG0180006118.01.T01:three_prime_UTR 30.0%
ATTAGTATTTGGACTAATGG+AGG - Chr1:100318870-100318889 MsG0180006118.01.T01:CDS 30.0%
TAGTGTTCAATATGAAACCA+AGG - Chr1:100318273-100318292 MsG0180006118.01.T01:intron 30.0%
TCAAAATCCAACAATGTACA+GGG - Chr1:100317355-100317374 MsG0180006118.01.T01:three_prime_UTR 30.0%
TCAAACTTGCAAAGAAATCA+TGG - Chr1:100317429-100317448 MsG0180006118.01.T01:three_prime_UTR 30.0%
TGAAAGGAGTTATATTTGCA+TGG + Chr1:100318309-100318328 None:intergenic 30.0%
! AGGGATTACTTGATGATAAA+TGG - Chr1:100318786-100318805 MsG0180006118.01.T01:CDS 30.0%
! GATTACTTGATGATAAATGG+TGG - Chr1:100318789-100318808 MsG0180006118.01.T01:CDS 30.0%
! GTTTAATATTGCATGGACTA+TGG - Chr1:100318457-100318476 MsG0180006118.01.T01:CDS 30.0%
! TCCTAATAAAGAGCTTTTGT+CGG + Chr1:100319033-100319052 None:intergenic 30.0%
!! TGATTTAACTTGCCATAAGT+AGG - Chr1:100319172-100319191 MsG0180006118.01.T01:CDS 30.0%
!!! AGTAGCACCTTGTTTTATTT+TGG - Chr1:100319074-100319093 MsG0180006118.01.T01:CDS 30.0%
!!! TCACTAGTTTTTTTCATGCT+TGG - Chr1:100319120-100319139 MsG0180006118.01.T01:CDS 30.0%
AAGTTTGATGTCTTCGATTC+CGG + Chr1:100317417-100317436 None:intergenic 35.0%
ATTAGGAGGATGCAAGTATT+AGG - Chr1:100319046-100319065 MsG0180006118.01.T01:CDS 35.0%
CAAAATAGTCGAAGGTTCTA+TGG - Chr1:100318905-100318924 MsG0180006118.01.T01:CDS 35.0%
CAATGCGAATGTTAAGCAAT+TGG - Chr1:100317802-100317821 MsG0180006118.01.T01:CDS 35.0%
GACAAAAGCTCTTTATTAGG+AGG - Chr1:100319032-100319051 MsG0180006118.01.T01:CDS 35.0%
GCTATACGCAAAGAAAAAAG+AGG - Chr1:100318677-100318696 MsG0180006118.01.T01:CDS 35.0%
TATGAGAAATATTCATGCCC+AGG + Chr1:100317836-100317855 None:intergenic 35.0%
TCCGACAAAAGCTCTTTATT+AGG - Chr1:100319029-100319048 MsG0180006118.01.T01:CDS 35.0%
! AAGAAATCATGGATTTTCCC+TGG - Chr1:100317440-100317459 MsG0180006118.01.T01:three_prime_UTR 35.0%
! TAAAGAGCTTTTGTCGGATA+AGG + Chr1:100319027-100319046 None:intergenic 35.0%
!! AACTCGAGTTGAATCAATTC+GGG - Chr1:100317768-100317787 MsG0180006118.01.T01:CDS 35.0%
!! CAACTCGAGTTGAATCAATT+CGG - Chr1:100317767-100317786 MsG0180006118.01.T01:CDS 35.0%
!! GGTTTTTGAGAATCAAAGAG+AGG - Chr1:100318063-100318082 MsG0180006118.01.T01:CDS 35.0%
!! TGAAGTTGGTTCGAAATCTA+GGG - Chr1:100317928-100317947 MsG0180006118.01.T01:CDS 35.0%
!! TTAAGTACTGGTTGGAATTC+TGG - Chr1:100318505-100318524 MsG0180006118.01.T01:CDS 35.0%
AATGGAGGCAAAATAGTCGA+AGG - Chr1:100318897-100318916 MsG0180006118.01.T01:CDS 40.0%
AGCAATTCTGTACGAGAAGA+AGG - Chr1:100318584-100318603 MsG0180006118.01.T01:CDS 40.0%
AGGTTCTATGGGTATGAAAG+AGG - Chr1:100318917-100318936 MsG0180006118.01.T01:CDS 40.0%
AGTACACTTCTCAATGCACT+TGG - Chr1:100318744-100318763 MsG0180006118.01.T01:CDS 40.0%
CAAAGAAAAAAGAGGCAGAG+GGG - Chr1:100318685-100318704 MsG0180006118.01.T01:CDS 40.0%
CTCGTTCAAGGAATCATTGA+AGG - Chr1:100317656-100317675 MsG0180006118.01.T01:CDS 40.0%
GAAAGTTATTGCGATGCAGA+GGG - Chr1:100317994-100318013 MsG0180006118.01.T01:CDS 40.0%
GATGGCTAAGATTAATGCTG+AGG - Chr1:100318824-100318843 MsG0180006118.01.T01:CDS 40.0%
GCAAAGAAAAAAGAGGCAGA+GGG - Chr1:100318684-100318703 MsG0180006118.01.T01:CDS 40.0%
GCTAAGATGAAAGGTGAAGT+TGG - Chr1:100317914-100317933 MsG0180006118.01.T01:CDS 40.0%
GGTTCGAGAGTTTATCATGA+GGG + Chr1:100317625-100317644 None:intergenic 40.0%
GTTCGAGAGTTTATCATGAG+GGG + Chr1:100317624-100317643 None:intergenic 40.0%
TAGAGTTAGGACTGAAGTGA+AGG - Chr1:100318042-100318061 MsG0180006118.01.T01:CDS 40.0%
TCAGTTTAGCGTATTTGAGG+AGG + Chr1:100317598-100317617 None:intergenic 40.0%
TCATGGACAGTCTTAAACAG+AGG + Chr1:100318969-100318988 None:intergenic 40.0%
TGCGAATGTTAAGCAATTGG+TGG - Chr1:100317805-100317824 MsG0180006118.01.T01:CDS 40.0%
TGGTTCGAGAGTTTATCATG+AGG + Chr1:100317626-100317645 None:intergenic 40.0%
TTTGCTACCCTGTACATTGT+TGG + Chr1:100317365-100317384 None:intergenic 40.0%
! AAACGACTACACAGCTCTAA+GGG - Chr1:100318767-100318786 MsG0180006118.01.T01:CDS 40.0%
! ACAAGGAGGGATTTAGAGTT+AGG - Chr1:100318029-100318048 MsG0180006118.01.T01:CDS 40.0%
! ACCATGGAAGAGGTTTTCAA+AGG - Chr1:100317707-100317726 MsG0180006118.01.T01:CDS 40.0%
! TCCTTTGAAAACCTCTTCCA+TGG + Chr1:100317711-100317730 None:intergenic 40.0%
! TGCATGGACTAAACTAACCT+TGG + Chr1:100318293-100318312 None:intergenic 40.0%
! TTTAGGGCAAAAGACGCAAA+TGG - Chr1:100317856-100317875 MsG0180006118.01.T01:CDS 40.0%
!! GTGAAGTTGGTTCGAAATCT+AGG - Chr1:100317927-100317946 MsG0180006118.01.T01:CDS 40.0%
AAGACTGTCCATGAGCAAAC+AGG - Chr1:100318975-100318994 MsG0180006118.01.T01:CDS 45.0%
ACTAATGGAGGTGACAATGG+AGG - Chr1:100318882-100318901 MsG0180006118.01.T01:CDS 45.0%
ACTCATGGCTTGAACTTCGA+AGG + Chr1:100317507-100317526 None:intergenic 45.0%
ATGGGTATGAAAGAGGTTGC+TGG - Chr1:100318924-100318943 MsG0180006118.01.T01:CDS 45.0%
ATTAATGCTGAGGCAGTACG+TGG - Chr1:100318834-100318853 MsG0180006118.01.T01:CDS 45.0%
CAATTTGGTCACTGAGACTG+TGG - Chr1:100319227-100319246 MsG0180006118.01.T01:CDS 45.0%
CGAAAGTTATTGCGATGCAG+AGG - Chr1:100317993-100318012 MsG0180006118.01.T01:CDS 45.0%
CGCAAAGAAAAAAGAGGCAG+AGG - Chr1:100318683-100318702 MsG0180006118.01.T01:CDS 45.0%
GAAACGACTACACAGCTCTA+AGG - Chr1:100318766-100318785 MsG0180006118.01.T01:CDS 45.0%
GAATCAAAGAGAGGCTGAAG+TGG - Chr1:100318072-100318091 MsG0180006118.01.T01:CDS 45.0%
GTAGGTACAAGAGGCTAACT+GGG - Chr1:100318533-100318552 MsG0180006118.01.T01:CDS 45.0%
GTGACACTTGGAAATGCTCA+AGG - Chr1:100318711-100318730 MsG0180006118.01.T01:CDS 45.0%
GTGGCAGAAGCTAAGATGAA+AGG - Chr1:100317905-100317924 MsG0180006118.01.T01:CDS 45.0%
GTTGGAATTCTGGATGGTGT+AGG - Chr1:100318515-100318534 MsG0180006118.01.T01:CDS 45.0%
TAAACTCTCGAACCACGTCA+AGG - Chr1:100317631-100317650 MsG0180006118.01.T01:exon 45.0%
TGGACAGTCTTAAACAGAGG+TGG + Chr1:100318966-100318985 None:intergenic 45.0%
TGGACTAATGGAGGTGACAA+TGG - Chr1:100318879-100318898 MsG0180006118.01.T01:CDS 45.0%
TGGTGGCATGTTTCAAGAGA+TGG - Chr1:100318806-100318825 MsG0180006118.01.T01:CDS 45.0%
TGTAGGTACAAGAGGCTAAC+TGG - Chr1:100318532-100318551 MsG0180006118.01.T01:CDS 45.0%
! ACTTCGAAGGTGTAGTTCAC+CGG + Chr1:100317494-100317513 None:intergenic 45.0%
! ATTTTATGCGCGCAAGCAAG+CGG - Chr1:100318644-100318663 MsG0180006118.01.T01:CDS 45.0%
! TGAGTTGGCGAAGAAGAAAG+CGG - Chr1:100318108-100318127 MsG0180006118.01.T01:CDS 45.0%
!! AGGCAGTTTTTCAGCACTCA+TGG + Chr1:100317522-100317541 None:intergenic 45.0%
!! GAATCAAGCTAGGGTTGATG+TGG - Chr1:100317886-100317905 MsG0180006118.01.T01:CDS 45.0%
!! GTACTGGTTGGAATTCTGGA+TGG - Chr1:100318509-100318528 MsG0180006118.01.T01:CDS 45.0%
!! GTTGGTTCGAAATCTAGGGA+AGG - Chr1:100317932-100317951 MsG0180006118.01.T01:CDS 45.0%
!! TGCTAAAGCTGTGGCTCTAA+GGG - Chr1:100318168-100318187 MsG0180006118.01.T01:intron 45.0%
!! ATAATAAATAAATAAATGAA+AGG + Chr1:100318325-100318344 None:intergenic 5.0%
AAGACCGCAGGAAGAACGAA+AGG + Chr1:100317542-100317561 None:intergenic 50.0%
AAGACGGTGCAAGATTGACC+AGG + Chr1:100317461-100317480 None:intergenic 50.0%
ACTGCCTTTCGTTCTTCCTG+CGG - Chr1:100317535-100317554 MsG0180006118.01.T01:three_prime_UTR 50.0%
AGACGGTGCAAGATTGACCA+GGG + Chr1:100317460-100317479 None:intergenic 50.0%
AGTTGAGGCTGCTAAAGCTG+TGG - Chr1:100318159-100318178 MsG0180006118.01.T01:CDS 50.0%
AGTTGCAAGGTGAGGTTGAG+AGG - Chr1:100318197-100318216 MsG0180006118.01.T01:intron 50.0%
ATGTTGCCTCCTGCTTGGAT+GGG - Chr1:100318999-100319018 MsG0180006118.01.T01:CDS 50.0%
CACGTCAAGGAACTCGTTCA+AGG - Chr1:100317644-100317663 MsG0180006118.01.T01:exon 50.0%
CTAAGGGAAGCTGAGTTGCA+AGG - Chr1:100318184-100318203 MsG0180006118.01.T01:intron 50.0%
CTGGATGGTGTAGGTACAAG+AGG - Chr1:100318524-100318543 MsG0180006118.01.T01:CDS 50.0%
CTTCCTGCGGTCTTCACAAT+CGG - Chr1:100317548-100317567 MsG0180006118.01.T01:three_prime_UTR 50.0%
CTTGAACGAGTTCCTTGACG+TGG + Chr1:100317646-100317665 None:intergenic 50.0%
CTTTCGTGATCGTCAACACG+AGG + Chr1:100317575-100317594 None:intergenic 50.0%
GATAAGGTTCCCATCCAAGC+AGG + Chr1:100319011-100319030 None:intergenic 50.0%
GCAACATGCCTGTTTGCTCA+TGG + Chr1:100318986-100319005 None:intergenic 50.0%
GGAAGCAGCGAATCAAGCTA+GGG - Chr1:100317877-100317896 MsG0180006118.01.T01:CDS 50.0%
GGCTGAGGCTAATTCTGAGT+TGG - Chr1:100318093-100318112 MsG0180006118.01.T01:CDS 50.0%
TCCGAGTACCTGGTGATAAC+CGG - Chr1:100317389-100317408 MsG0180006118.01.T01:three_prime_UTR 50.0%
TCCGGTTATCACCAGGTACT+CGG + Chr1:100317393-100317412 None:intergenic 50.0%
TCTGTACGAGAAGAAGGCAG+AGG - Chr1:100318590-100318609 MsG0180006118.01.T01:CDS 50.0%
TGCTCAAGTGGCTGAAGTTG+AGG - Chr1:100318144-100318163 MsG0180006118.01.T01:CDS 50.0%
TGCTTCGATGACCATGGAAG+AGG - Chr1:100317697-100317716 MsG0180006118.01.T01:CDS 50.0%
TGGAAGCAGCGAATCAAGCT+AGG - Chr1:100317876-100317895 MsG0180006118.01.T01:CDS 50.0%
TGGTCACTGAGACTGTGGTA+TGG - Chr1:100319232-100319251 MsG0180006118.01.T01:CDS 50.0%
TTGGACTAAGGCTGCTCAAG+TGG - Chr1:100318132-100318151 MsG0180006118.01.T01:CDS 50.0%
! AAGCAATTGGTGGATGTGCC+TGG - Chr1:100317815-100317834 MsG0180006118.01.T01:CDS 50.0%
! AGCAATTGGTGGATGTGCCT+GGG - Chr1:100317816-100317835 MsG0180006118.01.T01:CDS 50.0%
! CTGCTAAAGCTGTGGCTCTA+AGG - Chr1:100318167-100318186 MsG0180006118.01.T01:intron 50.0%
! GAAGAAAGCGGCTTGGACTA+AGG - Chr1:100318120-100318139 MsG0180006118.01.T01:CDS 50.0%
! GGCAGAAGCACAGAAAGCAT+TGG - Chr1:100318611-100318630 MsG0180006118.01.T01:CDS 50.0%
!! AGCAAAAGCATCCGAGTACC+TGG - Chr1:100317379-100317398 MsG0180006118.01.T01:three_prime_UTR 50.0%
AAGAGAGGCTGAAGTGGCTG+AGG - Chr1:100318078-100318097 MsG0180006118.01.T01:CDS 55.0%
AAGGTTCCCATCCAAGCAGG+AGG + Chr1:100319008-100319027 None:intergenic 55.0%
AGGTGTAGTTCACCGGTGAG+AGG + Chr1:100317487-100317506 None:intergenic 55.0%
CATGTTGCCTCCTGCTTGGA+TGG - Chr1:100318998-100319017 MsG0180006118.01.T01:CDS 55.0%
GATGTCTTCGATTCCGGCTC+CGG + Chr1:100317411-100317430 None:intergenic 55.0%
GCTGGAGAGAGTGACAAGGA+GGG - Chr1:100318016-100318035 MsG0180006118.01.T01:CDS 55.0%
GGAAGCTGAGTTGCAAGGTG+AGG - Chr1:100318189-100318208 MsG0180006118.01.T01:intron 55.0%
GTTATTGCGATGCAGAGGGC+TGG - Chr1:100317998-100318017 MsG0180006118.01.T01:CDS 55.0%
TACCTGGTGATAACCGGAGC+CGG - Chr1:100317395-100317414 MsG0180006118.01.T01:three_prime_UTR 55.0%
TGGCGAAGAAGAAAGCGGCT+TGG - Chr1:100318113-100318132 MsG0180006118.01.T01:CDS 55.0%
CACCGGTGAGAGGTCGAAGA+CGG + Chr1:100317477-100317496 None:intergenic 60.0%
CACCGTCTTCGACCTCTCAC+CGG - Chr1:100317472-100317491 MsG0180006118.01.T01:three_prime_UTR 60.0%
CAGGCATGTTGCCTCCTGCT+TGG - Chr1:100318994-100319013 MsG0180006118.01.T01:CDS 60.0%
CCATGGTCATCGAAGCAGCG+AGG + Chr1:100317694-100317713 None:intergenic 60.0%
CCTCGCTGCTTCGATGACCA+TGG - Chr1:100317691-100317710 MsG0180006118.01.T01:CDS 60.0%
GAGGGCTGGAGAGAGTGACA+AGG - Chr1:100318012-100318031 MsG0180006118.01.T01:CDS 60.0%
GCAGAGGGGATCGTGACACT+TGG - Chr1:100318699-100318718 MsG0180006118.01.T01:CDS 60.0%
GGACCGATTGTGAAGACCGC+AGG + Chr1:100317554-100317573 None:intergenic 60.0%
GGCTGGAGAGAGTGACAAGG+AGG - Chr1:100318015-100318034 MsG0180006118.01.T01:CDS 60.0%
TTCCGGCTCCGGTTATCACC+AGG + Chr1:100317400-100317419 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 100317298 100319418 100317298 ID=MsG0180006118.01;Name=MsG0180006118.01
Chr1 mRNA 100317298 100319418 100317298 ID=MsG0180006118.01.T01;Parent=MsG0180006118.01;Name=MsG0180006118.01.T01;_AED=0.00;_eAED=0.00;_QI=70|1|1|1|1|1|2|351|485
Chr1 exon 100317298 100318179 100317298 ID=MsG0180006118.01.T01:exon:25010;Parent=MsG0180006118.01.T01
Chr1 exon 100318422 100319418 100318422 ID=MsG0180006118.01.T01:exon:25009;Parent=MsG0180006118.01.T01
Chr1 five_prime_UTR 100319349 100319418 100319349 ID=MsG0180006118.01.T01:five_prime_utr;Parent=MsG0180006118.01.T01
Chr1 CDS 100318422 100319348 100318422 ID=MsG0180006118.01.T01:cds;Parent=MsG0180006118.01.T01
Chr1 CDS 100317649 100318179 100317649 ID=MsG0180006118.01.T01:cds;Parent=MsG0180006118.01.T01
Chr1 three_prime_UTR 100317298 100317648 100317298 ID=MsG0180006118.01.T01:three_prime_utr;Parent=MsG0180006118.01.T01
Gene Sequence

>MsG0180006118.01.T01

ATGTACAGGGTAGCAAAAGCATCCGAGTACCTGGTGATAACCGGAGCCGGAATCGAAGACATCAAACTTGCAAAGAAATCATGGATTTTCCCTGGTCAATCTTGCACCGTCTTCGACCTCTCACCGGTGAACTACACCTTCGAAGTTCAAGCCATGAGTGCTGAAAAACTGCCTTTCGTTCTTCCTGCGGTCTTCACAATCGGTCCTCGTGTTGACGATCACGAAAGCCTCCTCAAATACGCTAAACTGATTTCCCCTCATGATAAACTCTCGAACCACGTCAAGGAACTCGTTCAAGGAATCATTGAAGGTGAGACACGTGTCCTCGCTGCTTCGATGACCATGGAAGAGGTTTTCAAAGGAACAAAAGAGTTTAAACAAGAAGTATTCGAGAAAGTTCAACTCGAGTTGAATCAATTCGGGTTATTGATTTACAATGCGAATGTTAAGCAATTGGTGGATGTGCCTGGGCATGAATATTTCTCATATTTAGGGCAAAAGACGCAAATGGAAGCAGCGAATCAAGCTAGGGTTGATGTGGCAGAAGCTAAGATGAAAGGTGAAGTTGGTTCGAAATCTAGGGAAGGACAAACACTGCAGAATGCAGCAAAAATTGACGCAGAGACGAAAGTTATTGCGATGCAGAGGGCTGGAGAGAGTGACAAGGAGGGATTTAGAGTTAGGACTGAAGTGAAGGTTTTTGAGAATCAAAGAGAGGCTGAAGTGGCTGAGGCTAATTCTGAGTTGGCGAAGAAGAAAGCGGCTTGGACTAAGGCTGCTCAAGTGGCTGAAGTTGAGGCTGCTAAAGCTGTGGCTCTAAGGGAAGCTGAGTTGCAAGGTGAGGTTGAGAGGATGAATGCTTTGACTACTACTGAGAAGCTTAAAGCTGATTTACTTAGCAAAGCTAGTGTTCAATATGAAACCAAGGTACAAGAGGCTAACTGGGAATTATACAAGAAACAAAAAGAAGCAGAAGCAATTCTGTACGAGAAGAAGGCAGAGGCAGAAGCACAGAAAGCATTGGCAGATGCAACATTTTATGCGCGCAAGCAAGCGGCTGAAGCAGAGCTATACGCAAAGAAAAAAGAGGCAGAGGGGATCGTGACACTTGGAAATGCTCAAGGAGCGTATGTAAGTACACTTCTCAATGCACTTGGAAACGACTACACAGCTCTAAGGGATTACTTGATGATAAATGGTGGCATGTTTCAAGAGATGGCTAAGATTAATGCTGAGGCAGTACGTGGACTTGAACCTAAGATTAGTATTTGGACTAATGGAGGTGACAATGGAGGCAAAATAGTCGAAGGTTCTATGGGTATGAAAGAGGTTGCTGGTGTTTACAAGATGTTGCCACCTCTGTTTAAGACTGTCCATGAGCAAACAGGCATGTTGCCTCCTGCTTGGATGGGAACCTTATCCGACAAAAGCTCTTTATTAGGAGGATGCAAGTATTAG
Protein sequence

>MsG0180006118.01.T01

MYRVAKASEYLVITGAGIEDIKLAKKSWIFPGQSCTVFDLSPVNYTFEVQAMSAEKLPFVLPAVFTIGPRVDDHESLLKYAKLISPHDKLSNHVKELVQGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANVKQLVDVPGHEYFSYLGQKTQMEAANQARVDVAEAKMKGEVGSKSREGQTLQNAAKIDAETKVIAMQRAGESDKEGFRVRTEVKVFENQREAEVAEANSELAKKKAAWTKAAQVAEVEAAKAVALREAELQGEVERMNALTTTEKLKADLLSKASVQYETKVQEANWELYKKQKEAEAILYEKKAEAEAQKALADATFYARKQAAEAELYAKKKEAEGIVTLGNAQGAYVSTLLNALGNDYTALRDYLMINGGMFQEMAKINAEAVRGLEPKISIWTNGGDNGGKIVEGSMGMKEVAGVYKMLPPLFKTVHEQTGMLPPAWMGTLSDKSSLLGGCKY*