Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006111.01.T01 | XP_013470388.1 | 94.037 | 218 | 13 | 0 | 1 | 218 | 1 | 218 | 3.75E-150 | 426 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006111.01.T01 | Q9FMW4 | 50.98 | 204 | 98 | 2 | 15 | 216 | 11 | 214 | 3.87E-69 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006111.01.T01 | A0A072VRY5 | 94.037 | 218 | 13 | 0 | 1 | 218 | 1 | 218 | 1.79e-150 | 426 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000567.01 | MsG0180006111.01 | 0.807314 | 5.369334e-50 | 2.981113e-47 |
| MsG0180004752.01 | MsG0180006111.01 | 0.820346 | 7.200603e-53 | 5.682976e-50 |
| MsG0180006111.01 | MsG0180006226.01 | -0.814243 | 1.701477e-51 | 1.135678e-48 |
| MsG0180006111.01 | MsG0280010868.01 | 0.800014 | 1.757750e-48 | 8.096820e-46 |
| MsG0180006111.01 | MsG0380018009.01 | 0.804996 | 1.651700e-49 | 8.639765e-47 |
| MsG0180006111.01 | MsG0480019277.01 | 0.805945 | 1.044624e-49 | 5.599226e-47 |
| MsG0180006111.01 | MsG0480021554.01 | 0.801799 | 7.594019e-49 | 3.659851e-46 |
| MsG0180006111.01 | MsG0480022480.01 | 0.814173 | 1.762576e-51 | 1.174201e-48 |
| MsG0180006111.01 | MsG0580024246.01 | 0.810620 | 1.052802e-50 | 6.377140e-48 |
| MsG0180006111.01 | MsG0580029798.01 | 0.801001 | 1.106287e-48 | 5.225703e-46 |
| MsG0180006111.01 | MsG0780037109.01 | 0.814988 | 1.163726e-51 | 7.925209e-49 |
| MsG0180006111.01 | MsG0780038837.01 | 0.808415 | 3.132839e-50 | 1.790201e-47 |
| MsG0180006111.01 | MsG0780040144.01 | 0.801588 | 8.387642e-49 | 4.020692e-46 |
| MsG0180006111.01 | MsG0880041985.01 | 0.805194 | 1.501533e-49 | 7.894235e-47 |
| MsG0180006111.01 | MsG0880042967.01 | 0.808779 | 2.619001e-50 | 1.510800e-47 |
| MsG0180006111.01 | MsG0880047497.01 | 0.809529 | 1.809015e-50 | 1.064705e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006111.01.T01 | MTR_1g114690 | 94.037 | 218 | 13 | 0 | 1 | 218 | 1 | 218 | 4.54e-154 | 426 |
| MsG0180006111.01.T01 | MTR_1g114690 | 93.578 | 218 | 14 | 0 | 1 | 218 | 1 | 218 | 2.27e-152 | 422 |
| MsG0180006111.01.T01 | MTR_1g114690 | 81.349 | 252 | 13 | 1 | 1 | 218 | 1 | 252 | 1.06e-146 | 409 |
| MsG0180006111.01.T01 | MTR_1g114750 | 76.923 | 221 | 48 | 1 | 1 | 218 | 1 | 221 | 1.37e-125 | 354 |
| MsG0180006111.01.T01 | MTR_1g115130 | 75.688 | 218 | 29 | 1 | 1 | 218 | 1 | 194 | 9.68e-118 | 333 |
| MsG0180006111.01.T01 | MTR_1g114690 | 92.771 | 166 | 12 | 0 | 1 | 166 | 1 | 166 | 8.18e-109 | 311 |
| MsG0180006111.01.T01 | MTR_1g114640 | 54.825 | 228 | 84 | 3 | 1 | 217 | 1 | 220 | 2.55e-81 | 242 |
| MsG0180006111.01.T01 | MTR_1g033750 | 55.310 | 226 | 83 | 3 | 5 | 218 | 4 | 223 | 4.82e-80 | 239 |
| MsG0180006111.01.T01 | MTR_8g100065 | 48.889 | 180 | 91 | 1 | 40 | 218 | 6 | 185 | 2.79e-55 | 174 |
| MsG0180006111.01.T01 | MTR_8g100065 | 51.479 | 169 | 81 | 1 | 51 | 218 | 39 | 207 | 8.23e-55 | 174 |
| MsG0180006111.01.T01 | MTR_1g114640 | 52.247 | 178 | 66 | 3 | 1 | 167 | 1 | 170 | 5.40e-53 | 168 |
| MsG0180006111.01.T01 | MTR_6g077990 | 45.312 | 192 | 99 | 1 | 27 | 218 | 13 | 198 | 8.94e-53 | 169 |
| MsG0180006111.01.T01 | MTR_6g077990 | 44.792 | 192 | 101 | 1 | 27 | 218 | 13 | 199 | 1.55e-52 | 168 |
| MsG0180006111.01.T01 | MTR_6g077990 | 53.020 | 149 | 70 | 0 | 70 | 218 | 8 | 156 | 7.69e-49 | 157 |
| MsG0180006111.01.T01 | MTR_1g114680 | 63.964 | 111 | 40 | 0 | 108 | 218 | 53 | 163 | 5.72e-43 | 143 |
| MsG0180006111.01.T01 | MTR_8g069110 | 35.849 | 159 | 101 | 1 | 57 | 215 | 110 | 267 | 2.98e-36 | 129 |
| MsG0180006111.01.T01 | MTR_3g100750 | 35.714 | 154 | 98 | 1 | 62 | 215 | 103 | 255 | 1.54e-35 | 126 |
| MsG0180006111.01.T01 | MTR_7g083570 | 36.196 | 163 | 104 | 0 | 55 | 217 | 114 | 276 | 2.97e-34 | 124 |
| MsG0180006111.01.T01 | MTR_8g100065 | 51.327 | 113 | 54 | 1 | 51 | 162 | 17 | 129 | 1.19e-32 | 115 |
| MsG0180006111.01.T01 | MTR_8g100065 | 51.327 | 113 | 54 | 1 | 51 | 162 | 39 | 151 | 2.18e-32 | 115 |
| MsG0180006111.01.T01 | MTR_6g077990 | 41.304 | 138 | 75 | 1 | 27 | 164 | 13 | 144 | 9.54e-31 | 111 |
| MsG0180006111.01.T01 | MTR_2g076350 | 32.967 | 182 | 119 | 2 | 39 | 217 | 46 | 227 | 5.93e-28 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006111.01.T01 | AT5G23370 | 50.980 | 204 | 98 | 2 | 15 | 216 | 11 | 214 | 3.95e-70 | 213 |
| MsG0180006111.01.T01 | AT5G08350 | 51.220 | 205 | 91 | 2 | 12 | 216 | 18 | 213 | 5.62e-68 | 208 |
| MsG0180006111.01.T01 | AT5G23350 | 47.727 | 220 | 105 | 4 | 1 | 216 | 1 | 214 | 8.15e-67 | 205 |
| MsG0180006111.01.T01 | AT5G23360 | 44.954 | 218 | 108 | 3 | 1 | 217 | 1 | 207 | 1.01e-62 | 194 |
| MsG0180006111.01.T01 | AT5G13200 | 38.272 | 162 | 100 | 0 | 55 | 216 | 100 | 261 | 7.86e-39 | 135 |
| MsG0180006111.01.T01 | AT4G01600 | 38.750 | 160 | 97 | 1 | 57 | 215 | 26 | 185 | 1.97e-37 | 129 |
| MsG0180006111.01.T01 | AT4G01600 | 38.750 | 160 | 97 | 1 | 57 | 215 | 65 | 224 | 4.59e-37 | 129 |
| MsG0180006111.01.T01 | AT4G01600 | 34.500 | 200 | 116 | 4 | 31 | 215 | 20 | 219 | 2.00e-35 | 125 |
| MsG0180006111.01.T01 | AT2G22475 | 34.375 | 160 | 104 | 1 | 56 | 215 | 133 | 291 | 4.29e-34 | 124 |
| MsG0180006111.01.T01 | AT1G28200 | 34.591 | 159 | 103 | 1 | 57 | 215 | 97 | 254 | 3.27e-33 | 120 |
| MsG0180006111.01.T01 | AT1G28200 | 34.591 | 159 | 103 | 1 | 57 | 215 | 97 | 254 | 3.27e-33 | 120 |
| MsG0180006111.01.T01 | AT5G13200 | 36.697 | 109 | 69 | 0 | 55 | 163 | 100 | 208 | 1.12e-21 | 89.4 |
| MsG0180006111.01.T01 | AT2G22475 | 32.456 | 114 | 76 | 1 | 56 | 169 | 133 | 245 | 6.16e-17 | 77.4 |
Find 57 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTTTGATTTCTGGCTTA+TGG | 0.171332 | 1:+100261658 | MsG0180006111.01.T01:CDS |
| CAGTGGACAACTTTGATTTC+TGG | 0.206063 | 1:+100261651 | MsG0180006111.01.T01:CDS |
| AAGAGGAAGTTATGCTTTCT+TGG | 0.246220 | 1:-100260637 | None:intergenic |
| ATAGTTATAGTTGCAGATAT+TGG | 0.248888 | 1:+100261854 | MsG0180006111.01.T01:three_prime_UTR |
| AACTTTGATTTCTGGCTTAT+GGG | 0.269568 | 1:+100261659 | MsG0180006111.01.T01:CDS |
| AAGGTTACTCACCATGTTCT+TGG | 0.292240 | 1:-100261015 | None:intergenic |
| TAGTTATAGTTGCAGATATT+GGG | 0.341106 | 1:+100261855 | MsG0180006111.01.T01:three_prime_UTR |
| TTAATCAACAATATGTTGAT+AGG | 0.341754 | 1:-100261961 | None:intergenic |
| CTTCTTCATGAGCTAGTTGT+TGG | 0.342165 | 1:+100260747 | MsG0180006111.01.T01:CDS |
| TTTACTATGTGCAAGTGTTC+AGG | 0.349577 | 1:+100262131 | MsG0180006111.01.T01:three_prime_UTR |
| TTTCAAGTTCAATTACTTAA+CGG | 0.370111 | 1:+100262107 | MsG0180006111.01.T01:three_prime_UTR |
| ATACCATCAGATTCAAAATT+CGG | 0.371128 | 1:+100260782 | MsG0180006111.01.T01:CDS |
| TAAAGAGAAAATTGAGCTTA+GGG | 0.381007 | 1:+100261217 | MsG0180006111.01.T01:CDS |
| TATTGATCTGTCACTGCAAA+AGG | 0.396030 | 1:-100261394 | None:intergenic |
| ATAAAGAGAAAATTGAGCTT+AGG | 0.408838 | 1:+100261216 | MsG0180006111.01.T01:CDS |
| ACGCACTTGATATTCTTTAG+TGG | 0.410672 | 1:-100261575 | None:intergenic |
| TAACAAATTCGAACAAGAAA+AGG | 0.412169 | 1:+100260957 | MsG0180006111.01.T01:CDS |
| TCATGGACAGTCTTGATCAT+TGG | 0.414267 | 1:+100261901 | MsG0180006111.01.T01:intron |
| TGAATCTGATGGTATATGAT+TGG | 0.417569 | 1:-100260774 | None:intergenic |
| AATGCGTAGGATCCGCTATA+AGG | 0.432925 | 1:+100261440 | MsG0180006111.01.T01:CDS |
| TGTTATCTATCCACCACATC+TGG | 0.434162 | 1:+100261330 | MsG0180006111.01.T01:CDS |
| CTTGATATTCTTTAGTGGAA+TGG | 0.442770 | 1:-100261570 | None:intergenic |
| CAAGAAAAGGCTTGCTAGGA+AGG | 0.445665 | 1:+100260970 | MsG0180006111.01.T01:CDS |
| GATTATATTGAAGATTTGAA+TGG | 0.457718 | 1:-100262175 | None:intergenic |
| ACCACATCTGGCCCTCTAGC+TGG | 0.475765 | 1:+100261342 | MsG0180006111.01.T01:CDS |
| CGCATGCTTTGTTACATGAA+AGG | 0.488384 | 1:+100262008 | MsG0180006111.01.T01:three_prime_UTR |
| AACTTTCAAATATCTTGAGC+AGG | 0.496933 | 1:+100261700 | MsG0180006111.01.T01:CDS |
| CGAACAAGAAAAGGCTTGCT+AGG | 0.498890 | 1:+100260966 | MsG0180006111.01.T01:CDS |
| ACTAGCAGTAGAAGTTGAAG+AGG | 0.506600 | 1:-100260675 | None:intergenic |
| ATATTTATGTACTTCTGCGT+TGG | 0.511134 | 1:-100261623 | None:intergenic |
| ACATATTGTTGATTAAATTG+TGG | 0.518758 | 1:+100261968 | MsG0180006111.01.T01:three_prime_UTR |
| CCTTCTCATTCGAGATGAAG+AGG | 0.534747 | 1:-100261368 | None:intergenic |
| ATAAAAGTCTTTAATCAGAA+AGG | 0.537723 | 1:+100261414 | MsG0180006111.01.T01:CDS |
| GAATGAAGCTTGACGTTGCG+AGG | 0.538855 | 1:+100261789 | MsG0180006111.01.T01:three_prime_UTR |
| AGCTAGAGGGCCAGATGTGG+TGG | 0.540629 | 1:-100261340 | None:intergenic |
| ATGAAGAGGAGACCAGCTAG+AGG | 0.548150 | 1:-100261354 | None:intergenic |
| ATGGTAGAAAACAAGATGGA+AGG | 0.551037 | 1:+100262042 | MsG0180006111.01.T01:three_prime_UTR |
| ATAATATAAATAGTTGAGGC+TGG | 0.562226 | 1:+100261767 | MsG0180006111.01.T01:three_prime_UTR |
| AGGGGCTCAAATTCTTCAAG+TGG | 0.580559 | 1:+100261236 | MsG0180006111.01.T01:CDS |
| AATTCTTCAAGTGGGTGGAG+TGG | 0.586812 | 1:+100261245 | MsG0180006111.01.T01:CDS |
| GCACATGTTTCATTTCAGCT+CGG | 0.588957 | 1:+100261925 | MsG0180006111.01.T01:three_prime_UTR |
| CTATTTATATTATGCACATG+TGG | 0.599520 | 1:-100261757 | None:intergenic |
| ATCTGGGACTTACCTTATAG+CGG | 0.601651 | 1:-100261452 | None:intergenic |
| CCTCTTCATCTCGAATGAGA+AGG | 0.603731 | 1:+100261368 | MsG0180006111.01.T01:CDS |
| ATCAGAAAGGTCAAATGCGT+AGG | 0.606952 | 1:+100261427 | MsG0180006111.01.T01:CDS |
| GCTCAAATTCTTCAAGTGGG+TGG | 0.609214 | 1:+100261240 | MsG0180006111.01.T01:CDS |
| GGGGCTCAAATTCTTCAAGT+GGG | 0.611003 | 1:+100261237 | MsG0180006111.01.T01:CDS |
| TTTATATTATGCACATGTGG+CGG | 0.623871 | 1:-100261754 | None:intergenic |
| AATGAAGCTTGACGTTGCGA+GGG | 0.626771 | 1:+100261790 | MsG0180006111.01.T01:three_prime_UTR |
| GGAATGTTCTGAGCTACAAG+AGG | 0.629624 | 1:-100260654 | None:intergenic |
| ACCAGCTAGAGGGCCAGATG+TGG | 0.630645 | 1:-100261343 | None:intergenic |
| GTGCATAATATAAATAGTTG+AGG | 0.630815 | 1:+100261763 | MsG0180006111.01.T01:three_prime_UTR |
| TGAAGAGGAGACCAGCTAGA+GGG | 0.639442 | 1:-100261353 | None:intergenic |
| AACTAGCTCATGAAGAAGTG+AGG | 0.642281 | 1:-100260742 | None:intergenic |
| GTACATAAATATAGTTACAG+TGG | 0.643140 | 1:+100261634 | MsG0180006111.01.T01:CDS |
| AAAGAGAAAATTGAGCTTAG+GGG | 0.647324 | 1:+100261218 | MsG0180006111.01.T01:CDS |
| GAGTGGAGAAAGTGTTTATG+CGG | 0.656181 | 1:+100261262 | MsG0180006111.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAAAATTATATATAAT+AGG | - | Chr1:100261162-100261181 | None:intergenic | 0.0% |
| !!! | AGATTTTTAAAAATTCTTAA+TGG | + | Chr1:100261521-100261540 | MsG0180006111.01.T01:intron | 10.0% |
| !! | ATAAAAGTCTTTAATCAGAA+AGG | + | Chr1:100261414-100261433 | MsG0180006111.01.T01:CDS | 20.0% |
| !! | ATAAAGATATTGCAAACAAA+AGG | - | Chr1:100261093-100261112 | None:intergenic | 20.0% |
| !! | GATTATATTGAAGATTTGAA+TGG | - | Chr1:100262178-100262197 | None:intergenic | 20.0% |
| !! | TTAATCAACAATATGTTGAT+AGG | - | Chr1:100261964-100261983 | None:intergenic | 20.0% |
| !!! | ACATATTGTTGATTAAATTG+TGG | + | Chr1:100261968-100261987 | MsG0180006111.01.T01:three_prime_UTR | 20.0% |
| !!! | ATGAAAGGAGTTTATTTTTA+TGG | + | Chr1:100262023-100262042 | MsG0180006111.01.T01:three_prime_UTR | 20.0% |
| !!! | TTTCAAGTTCAATTACTTAA+CGG | + | Chr1:100262107-100262126 | MsG0180006111.01.T01:three_prime_UTR | 20.0% |
| ! | ATAAACGATGCAATAACAAT+TGG | - | Chr1:100261060-100261079 | None:intergenic | 25.0% |
| ! | ATAAAGAGAAAATTGAGCTT+AGG | + | Chr1:100261216-100261235 | MsG0180006111.01.T01:CDS | 25.0% |
| ! | ATAATATAAATAGTTGAGGC+TGG | + | Chr1:100261767-100261786 | MsG0180006111.01.T01:three_prime_UTR | 25.0% |
| ! | ATACCATCAGATTCAAAATT+CGG | + | Chr1:100260782-100260801 | MsG0180006111.01.T01:CDS | 25.0% |
| ! | ATAGTTATAGTTGCAGATAT+TGG | + | Chr1:100261854-100261873 | MsG0180006111.01.T01:three_prime_UTR | 25.0% |
| ! | CTATTTATATTATGCACATG+TGG | - | Chr1:100261760-100261779 | None:intergenic | 25.0% |
| ! | GTACATAAATATAGTTACAG+TGG | + | Chr1:100261634-100261653 | MsG0180006111.01.T01:CDS | 25.0% |
| ! | GTGCATAATATAAATAGTTG+AGG | + | Chr1:100261763-100261782 | MsG0180006111.01.T01:three_prime_UTR | 25.0% |
| ! | GTTTGTGTGTATATTAATCT+GGG | - | Chr1:100261471-100261490 | None:intergenic | 25.0% |
| ! | TAAAGAGAAAATTGAGCTTA+GGG | + | Chr1:100261217-100261236 | MsG0180006111.01.T01:CDS | 25.0% |
| ! | TAACAAATTCGAACAAGAAA+AGG | + | Chr1:100260957-100260976 | MsG0180006111.01.T01:CDS | 25.0% |
| ! | TAGTTATAGTTGCAGATATT+GGG | + | Chr1:100261855-100261874 | MsG0180006111.01.T01:three_prime_UTR | 25.0% |
| !! | TTTTATGGTAGAAAACAAGA+TGG | + | Chr1:100262038-100262057 | MsG0180006111.01.T01:three_prime_UTR | 25.0% |
| AAAGAGAAAATTGAGCTTAG+GGG | + | Chr1:100261218-100261237 | MsG0180006111.01.T01:CDS | 30.0% | |
| AACTTTCAAATATCTTGAGC+AGG | + | Chr1:100261700-100261719 | MsG0180006111.01.T01:CDS | 30.0% | |
| ACAAACCTATTCATATCTCT+CGG | + | Chr1:100261485-100261504 | MsG0180006111.01.T01:intron | 30.0% | |
| ATATTTATGTACTTCTGCGT+TGG | - | Chr1:100261626-100261645 | None:intergenic | 30.0% | |
| ATCAAGTAAATGACTATACG+AGG | - | Chr1:100261129-100261148 | None:intergenic | 30.0% | |
| ATCATGAACATCTGTATTGA+TGG | + | Chr1:100260899-100260918 | MsG0180006111.01.T01:intron | 30.0% | |
| CTTGATATTCTTTAGTGGAA+TGG | - | Chr1:100261573-100261592 | None:intergenic | 30.0% | |
| GGTTTGTGTGTATATTAATC+TGG | - | Chr1:100261472-100261491 | None:intergenic | 30.0% | |
| TATGTATATGTCTCATGTAC+AGG | + | Chr1:100261544-100261563 | MsG0180006111.01.T01:intron | 30.0% | |
| TGAATCTGATGGTATATGAT+TGG | - | Chr1:100260777-100260796 | None:intergenic | 30.0% | |
| TTTATATTATGCACATGTGG+CGG | - | Chr1:100261757-100261776 | None:intergenic | 30.0% | |
| ! | AACACTGCGAAATTTTTAAC+AGG | - | Chr1:100261314-100261333 | None:intergenic | 30.0% |
| ! | AACGATAAAGCACTCAATAT+TGG | - | Chr1:100260930-100260949 | None:intergenic | 30.0% |
| ! | TAACCGAATTTTGAATCTGA+TGG | - | Chr1:100260788-100260807 | None:intergenic | 30.0% |
| !! | AACTTTGATTTCTGGCTTAT+GGG | + | Chr1:100261659-100261678 | MsG0180006111.01.T01:CDS | 30.0% |
| !! | CTTACTTTTGCTTTGATGTT+TGG | - | Chr1:100260856-100260875 | None:intergenic | 30.0% |
| AAACACATCTGAGTCTTACA+AGG | - | Chr1:100261037-100261056 | None:intergenic | 35.0% | |
| AAGAGGAAGTTATGCTTTCT+TGG | - | Chr1:100260640-100260659 | None:intergenic | 35.0% | |
| ACGCACTTGATATTCTTTAG+TGG | - | Chr1:100261578-100261597 | None:intergenic | 35.0% | |
| AGAAACCGAGAGATATGAAT+AGG | - | Chr1:100261493-100261512 | None:intergenic | 35.0% | |
| ATGGTAGAAAACAAGATGGA+AGG | + | Chr1:100262042-100262061 | MsG0180006111.01.T01:three_prime_UTR | 35.0% | |
| ATTGAGTGCTTTATCGTTTC+AGG | + | Chr1:100260932-100260951 | MsG0180006111.01.T01:intron | 35.0% | |
| CTTTGATAAGAAGGACTTCA+TGG | + | Chr1:100261884-100261903 | MsG0180006111.01.T01:intron | 35.0% | |
| GATATTGCAAACAAAAGGCA+TGG | - | Chr1:100261088-100261107 | None:intergenic | 35.0% | |
| TATTGATCTGTCACTGCAAA+AGG | - | Chr1:100261397-100261416 | None:intergenic | 35.0% | |
| TCACAAAAAGTCCAAGAACA+TGG | + | Chr1:100261004-100261023 | MsG0180006111.01.T01:CDS | 35.0% | |
| TGATTCGTCTGTAAAGGAAA+TGG | - | Chr1:100260883-100260902 | None:intergenic | 35.0% | |
| TGTTCATGATTCGTCTGTAA+AGG | - | Chr1:100260889-100260908 | None:intergenic | 35.0% | |
| TTTACTATGTGCAAGTGTTC+AGG | + | Chr1:100262131-100262150 | MsG0180006111.01.T01:three_prime_UTR | 35.0% | |
| ! | CTTTTGCTTTGATGTTTGGA+TGG | - | Chr1:100260852-100260871 | None:intergenic | 35.0% |
| !! | CAACTTTGATTTCTGGCTTA+TGG | + | Chr1:100261658-100261677 | MsG0180006111.01.T01:CDS | 35.0% |
| AACTAGCTCATGAAGAAGTG+AGG | - | Chr1:100260745-100260764 | None:intergenic | 40.0% | |
| AAGGTTACTCACCATGTTCT+TGG | - | Chr1:100261018-100261037 | None:intergenic | 40.0% | |
| ACTAGCAGTAGAAGTTGAAG+AGG | - | Chr1:100260678-100260697 | None:intergenic | 40.0% | |
| ATCAGAAAGGTCAAATGCGT+AGG | + | Chr1:100261427-100261446 | MsG0180006111.01.T01:CDS | 40.0% | |
| CTTCTTCATGAGCTAGTTGT+TGG | + | Chr1:100260747-100260766 | MsG0180006111.01.T01:CDS | 40.0% | |
| GCACATGTTTCATTTCAGCT+CGG | + | Chr1:100261925-100261944 | MsG0180006111.01.T01:three_prime_UTR | 40.0% | |
| TCATGGACAGTCTTGATCAT+TGG | + | Chr1:100261901-100261920 | MsG0180006111.01.T01:intron | 40.0% | |
| TGTTATCTATCCACCACATC+TGG | + | Chr1:100261330-100261349 | MsG0180006111.01.T01:CDS | 40.0% | |
| ! | ATCTGGGACTTACCTTATAG+CGG | - | Chr1:100261455-100261474 | None:intergenic | 40.0% |
| ! | CAGTGGACAACTTTGATTTC+TGG | + | Chr1:100261651-100261670 | MsG0180006111.01.T01:CDS | 40.0% |
| ! | CGCATGCTTTGTTACATGAA+AGG | + | Chr1:100262008-100262027 | MsG0180006111.01.T01:three_prime_UTR | 40.0% |
| !! | GAGTGGAGAAAGTGTTTATG+CGG | + | Chr1:100261262-100261281 | MsG0180006111.01.T01:CDS | 40.0% |
| AATGAAGCTTGACGTTGCGA+GGG | + | Chr1:100261790-100261809 | MsG0180006111.01.T01:three_prime_UTR | 45.0% | |
| AATGCGTAGGATCCGCTATA+AGG | + | Chr1:100261440-100261459 | MsG0180006111.01.T01:CDS | 45.0% | |
| AATTCTTCAAGTGGGTGGAG+TGG | + | Chr1:100261245-100261264 | MsG0180006111.01.T01:CDS | 45.0% | |
| AGGGGCTCAAATTCTTCAAG+TGG | + | Chr1:100261236-100261255 | MsG0180006111.01.T01:CDS | 45.0% | |
| CCTCTTCATCTCGAATGAGA+AGG | + | Chr1:100261368-100261387 | MsG0180006111.01.T01:CDS | 45.0% | |
| CCTTCTCATTCGAGATGAAG+AGG | - | Chr1:100261371-100261390 | None:intergenic | 45.0% | |
| GCTCAAATTCTTCAAGTGGG+TGG | + | Chr1:100261240-100261259 | MsG0180006111.01.T01:CDS | 45.0% | |
| GGGGCTCAAATTCTTCAAGT+GGG | + | Chr1:100261237-100261256 | MsG0180006111.01.T01:CDS | 45.0% | |
| ! | CGAACAAGAAAAGGCTTGCT+AGG | + | Chr1:100260966-100260985 | MsG0180006111.01.T01:CDS | 45.0% |
| ! | GGAATGTTCTGAGCTACAAG+AGG | - | Chr1:100260657-100260676 | None:intergenic | 45.0% |
| ! | GGGCACTGTCTTTGATAAGA+AGG | + | Chr1:100261875-100261894 | MsG0180006111.01.T01:intron | 45.0% |
| !! | CAAGAAAAGGCTTGCTAGGA+AGG | + | Chr1:100260970-100260989 | MsG0180006111.01.T01:CDS | 45.0% |
| !!! | GCGGTATTTTAGTGTGAGTG+AGG | + | Chr1:100261281-100261300 | MsG0180006111.01.T01:CDS | 45.0% |
| ATGAAGAGGAGACCAGCTAG+AGG | - | Chr1:100261357-100261376 | None:intergenic | 50.0% | |
| GAATGAAGCTTGACGTTGCG+AGG | + | Chr1:100261789-100261808 | MsG0180006111.01.T01:three_prime_UTR | 50.0% | |
| TGAAGAGGAGACCAGCTAGA+GGG | - | Chr1:100261356-100261375 | None:intergenic | 50.0% | |
| ACCACATCTGGCCCTCTAGC+TGG | + | Chr1:100261342-100261361 | MsG0180006111.01.T01:CDS | 60.0% | |
| ACCAGCTAGAGGGCCAGATG+TGG | - | Chr1:100261346-100261365 | None:intergenic | 60.0% | |
| AGCTAGAGGGCCAGATGTGG+TGG | - | Chr1:100261343-100261362 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 100260630 | 100262215 | 100260630 | ID=MsG0180006111.01;Name=MsG0180006111.01 |
| Chr1 | mRNA | 100260630 | 100262215 | 100260630 | ID=MsG0180006111.01.T01;Parent=MsG0180006111.01;Name=MsG0180006111.01.T01;_AED=0.34;_eAED=0.34;_QI=105|1|1|1|0.75|0.6|5|446|218 |
| Chr1 | exon | 100260630 | 100260870 | 100260630 | ID=MsG0180006111.01.T01:exon:38152;Parent=MsG0180006111.01.T01 |
| Chr1 | exon | 100260954 | 100261025 | 100260954 | ID=MsG0180006111.01.T01:exon:38153;Parent=MsG0180006111.01.T01 |
| Chr1 | exon | 100261187 | 100261461 | 100261187 | ID=MsG0180006111.01.T01:exon:38154;Parent=MsG0180006111.01.T01 |
| Chr1 | exon | 100261566 | 100261876 | 100261566 | ID=MsG0180006111.01.T01:exon:38155;Parent=MsG0180006111.01.T01 |
| Chr1 | exon | 100261907 | 100262215 | 100261907 | ID=MsG0180006111.01.T01:exon:38156;Parent=MsG0180006111.01.T01 |
| Chr1 | five_prime_UTR | 100260630 | 100260734 | 100260630 | ID=MsG0180006111.01.T01:five_prime_utr;Parent=MsG0180006111.01.T01 |
| Chr1 | CDS | 100260735 | 100260870 | 100260735 | ID=MsG0180006111.01.T01:cds;Parent=MsG0180006111.01.T01 |
| Chr1 | CDS | 100260954 | 100261025 | 100260954 | ID=MsG0180006111.01.T01:cds;Parent=MsG0180006111.01.T01 |
| Chr1 | CDS | 100261187 | 100261461 | 100261187 | ID=MsG0180006111.01.T01:cds;Parent=MsG0180006111.01.T01 |
| Chr1 | CDS | 100261566 | 100261739 | 100261566 | ID=MsG0180006111.01.T01:cds;Parent=MsG0180006111.01.T01 |
| Chr1 | three_prime_UTR | 100261740 | 100261876 | 100261740 | ID=MsG0180006111.01.T01:three_prime_utr;Parent=MsG0180006111.01.T01 |
| Chr1 | three_prime_UTR | 100261907 | 100262215 | 100261907 | ID=MsG0180006111.01.T01:three_prime_utr;Parent=MsG0180006111.01.T01 |
| Gene Sequence |
| Protein sequence |
