AlfalfaGEDB | MsG0780038837.01

M. sativa cultivar ZhongmuNo.1 / MsG0780038837.01

KEGG: -
GO: GO:0004672 GO:0005524 GO:0006468 GO:0030246
PFAM: PF00069 PF00139

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038837.01.T01	KEH22962.1	97.944	681	14	0	7	687	2	682	0	1374

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038837.01.T01	Q9M2S4	57.808	666	269	8	21	677	19	681	0	753

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038837.01.T01	A0A072U009	97.944	681	14	0	7	687	2	682	0.0	1374

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047814.01	MsG0780038837.01	0.849660	2.803530e-60	5.353442e-57
MsG0080048058.01	MsG0780038837.01	0.823960	1.045558e-53	9.136705e-51
MsG0080048150.01	MsG0780038837.01	0.815432	9.274892e-52	6.393486e-49
MsG0080048700.01	MsG0780038837.01	0.805519	1.283861e-49	6.806187e-47
MsG0080048765.01	MsG0780038837.01	0.821854	3.236048e-53	2.663947e-50
MsG0080048842.01	MsG0780038837.01	-0.809992	1.438278e-50	8.569454e-48
MsG0180000001.01	MsG0780038837.01	0.863746	1.997150e-64	6.121498e-61
MsG0180000024.01	MsG0780038837.01	0.824879	6.355055e-54	5.701449e-51
MsG0180000065.01	MsG0780038837.01	0.805939	1.047673e-49	5.614762e-47
MsG0180000172.01	MsG0780038837.01	0.807119	5.905197e-50	3.261853e-47

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PPI

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Gene1	Gene2	Type
MsG0780038837.01	MsG0780038827.01	PPI
MsG0780038837.01	MsG0780038828.01	PPI
MsG0780038837.01	MsG0780038826.01	PPI
MsG0780038837.01	MsG0780038836.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0780038837.01.T01	MTR_7g063010	97.944	681	14	0	7	687	2	682	1374
MsG0780038837.01.T01	MTR_7g063030	83.609	665	107	2	3	666	1	664	1155
MsG0780038837.01.T01	MTR_7g063030	84.236	628	97	2	40	666	32	658	1103
MsG0780038837.01.T01	MTR_5g035910	76.778	689	153	5	3	687	1	686	1025
MsG0780038837.01.T01	MTR_3g068025	61.128	656	233	7	23	661	24	674	782
MsG0780038837.01.T01	MTR_1g052275	55.902	610	257	5	21	622	16	621	673
MsG0780038837.01.T01	MTR_7g062950	55.502	618	266	5	11	622	5	619	672
MsG0780038837.01.T01	MTR_7g062890	54.254	623	268	7	9	622	3	617	655
MsG0780038837.01.T01	MTR_7g062750	53.473	619	278	5	10	621	5	620	654
MsG0780038837.01.T01	MTR_7g062940	53.821	615	276	5	13	622	7	618	652

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0780038837.01.T01	AT3G55550	57.808	666	269	8	21	677	19	681	753
MsG0780038837.01.T01	AT3G53810	55.757	608	257	8	23	621	22	626	658
MsG0780038837.01.T01	AT2G37710	54.746	590	261	5	38	621	36	625	629
MsG0780038837.01.T01	AT4G29050	51.545	615	282	10	44	644	52	664	621
MsG0780038837.01.T01	AT4G29050	51.545	615	282	10	44	644	38	650	620
MsG0780038837.01.T01	AT4G02420	52.556	626	282	7	9	622	7	629	619
MsG0780038837.01.T01	AT4G02410	52.764	597	270	7	38	622	38	634	608
MsG0780038837.01.T01	AT1G70110	49.241	593	292	5	40	624	33	624	592
MsG0780038837.01.T01	AT3G45430	48.581	599	291	11	33	622	30	620	557
MsG0780038837.01.T01	AT3G45430	48.581	599	291	11	33	622	30	620	557

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Find 285 sgRNAs with CRISPR-Local

Find 624 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGAACAAAATTATT+TGG	0.126855	7:+53781299	None:intergenic
AAAAGCCACATCATGTGTCT+TGG	0.510913	7:-53781329	MsG0780038837.01.T01:CDS
AAACAGTTGCTTGGGCAGGG+TGG	0.643338	7:-53788249	MsG0780038837.01.T01:CDS
AAACATACTTCTTTGATACT+CGG	0.585234	7:-53788438	MsG0780038837.01.T01:CDS
AAACCACTGTCAATTTCGGG+AGG	0.681430	7:+53781500	None:intergenic
AAACTCAATATAGGTTTCTT+AGG	0.283513	7:+53788630	None:intergenic
AAAGAAGAACAAAATTATTT+GGG	0.300648	7:+53781300	None:intergenic
AAAGAAGTATGTTTCTTCTT+AGG	0.214367	7:+53788447	None:intergenic
AAATGAAACAAGTAGGTTAT+TGG	0.265417	7:-53789114	MsG0780038837.01.T01:CDS
AACATTAGGCTATTTGGCAC+CGG	0.534642	7:-53787767	MsG0780038837.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAATTCTAAGTCCTCAG+CGG	+	Chr7:53786711-53786730	None:intergenic	30.0%
AACTTTGTATCCGAAATGAA+TGG	-	Chr7:53784133-53784152	MsG0780038837.01.T01:intron	30.0%
AATGTCAACCATTTATCTAG+AGG	+	Chr7:53788292-53788311	None:intergenic	30.0%
ACAAAAGTCATAGCTGTAAT+TGG	-	Chr7:53785417-53785436	MsG0780038837.01.T01:intron	30.0%
ACACTCATGAATATTGAAAG+AGG	-	Chr7:53788598-53788617	MsG0780038837.01.T01:CDS	30.0%
ACATAGGATTAATGTTTAGG+AGG	-	Chr7:53789212-53789231	MsG0780038837.01.T01:CDS	30.0%
ACCATGTATTGAGAAAATTG+TGG	-	Chr7:53788060-53788079	MsG0780038837.01.T01:CDS	30.0%
AGATACAATCATCATTTGGT+AGG	-	Chr7:53787316-53787335	MsG0780038837.01.T01:CDS	30.0%
AGGTTTAAACCCTCATTTAA+TGG	+	Chr7:53786969-53786988	None:intergenic	30.0%
AGTCATTCCTTATAACACAT+GGG	+	Chr7:53783503-53783522	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	53780475	53789309	53780475	ID=MsG0780038837.01;Name=MsG0780038837.01
Chr7	mRNA	53780475	53789309	53780475	ID=MsG0780038837.01.T01;Parent=MsG0780038837.01;Name=MsG0780038837.01.T01;_AED=0.73;_eAED=0.73;_QI=0\|0\|0\|0.14\|1\|1\|7\|0\|1320
Chr7	exon	53787250	53789309	53787250	ID=MsG0780038837.01.T01:exon:10142;Parent=MsG0780038837.01.T01
Chr7	exon	53783700	53783865	53783700	ID=MsG0780038837.01.T01:exon:10141;Parent=MsG0780038837.01.T01
Chr7	exon	53782795	53782917	53782795	ID=MsG0780038837.01.T01:exon:10140;Parent=MsG0780038837.01.T01
Chr7	exon	53782593	53782711	53782593	ID=MsG0780038837.01.T01:exon:10139;Parent=MsG0780038837.01.T01
Chr7	exon	53782169	53782395	53782169	ID=MsG0780038837.01.T01:exon:10138;Parent=MsG0780038837.01.T01
Chr7	exon	53781114	53782058	53781114	ID=MsG0780038837.01.T01:exon:10137;Parent=MsG0780038837.01.T01
Chr7	exon	53780475	53780797	53780475	ID=MsG0780038837.01.T01:exon:10136;Parent=MsG0780038837.01.T01
Chr7	CDS	53787250	53789309	53787250	ID=MsG0780038837.01.T01:cds;Parent=MsG0780038837.01.T01
Chr7	CDS	53783700	53783865	53783700	ID=MsG0780038837.01.T01:cds;Parent=MsG0780038837.01.T01
Chr7	CDS	53782795	53782917	53782795	ID=MsG0780038837.01.T01:cds;Parent=MsG0780038837.01.T01
Chr7	CDS	53782593	53782711	53782593	ID=MsG0780038837.01.T01:cds;Parent=MsG0780038837.01.T01
Chr7	CDS	53782169	53782395	53782169	ID=MsG0780038837.01.T01:cds;Parent=MsG0780038837.01.T01
Chr7	CDS	53781114	53782058	53781114	ID=MsG0780038837.01.T01:cds;Parent=MsG0780038837.01.T01
Chr7	CDS	53780475	53780797	53780475	ID=MsG0780038837.01.T01:cds;Parent=MsG0780038837.01.T01

Gene Sequence

>MsG0780038837.01.T01

ATGGTCATGCCAACCCATCTTCAATTCTTGATACCATTTTCATTCTTCTTTTTTCTACCAGTTTTGTCTCAAGTTGACCAACTACTATACACAGGTTTTAAGGATGTTGGTCCAAAAAACCTAACCTTAAATGGCATAGCAGAAATACAAAAAAATGGTATAATAAGATTAACAAATGAAACAAGTAGGTTATTGGGTCATGCTTTTTACCCTCAACCATTTCAGATAAAGAACAAAACAACTGGTAAAGTTTTCTCTTTCTCTTCATCTTTTGCACTTGCTTGTGTACCTGAATATCCTAAACTTGGTGGCCATGGCATGGCTTTTACTATAGTTCCTTCAAAAGATCTCAAAGCTTTACCTAGTCAATATCTTGGTCTTCTGAATTCAAGTGATGTTGGTAATTTCTCTAACCATCTTTTTGCTGTTGAGTTTGACACTGTTCAAGATTTTGAGTTTGGTGATATTAATGATAACCATGTTGGTATAGATATTAATAGTATGCGTTCAAATGCATCTATTACTGCTAGTTATTATAGTGATGATGATATGGTTCATAATATTAGTATTAAAGGTGGAAAACCAATTTTAGTTTGGGTTGATTATGATTCTTCATTGAATCTTATTAGTGTTACACTTTCACCAACTTCAAATAAGCCTAAGAAACCTATATTGAGTTTTCATATGGATCTATCACCTCTTTTTCTTGATACTATGTATGTTGGTTTCTCTGCTTCAACTGGTTTACTTGCTAGCTCTCATTATGTTTTGGGTTGGAGTTTCAAAATTAATGGGCCGGCGCCGTTTCTTGATTTGTCGAAACTACCTCAGCTTCCACATCCTAAGAAGAAACATACTTCTTTGATACTCGGTGTTTCGCTCGGATCTGCTTTGATTGTATTGTGTTCTATGGCATTTGGTTTTTACATTTATAGAAAAATCAAGAATGCTGATGTTATTGAAGCTTGGGAGCTTGAAGTTGGACCACATAGATATACTTATCAAGAGCTCAAGACAGCTACAAAAGGTTTCAAGGAGAAACAGTTGCTTGGGCAGGGTGGTTTTGGTAAAGTTTATAACGGGATATTGCCGAAATCGAAGATTCAAGTGGCTGTTAAGAGAGTTTCACATGAATCAAAACAAGGGTTGAGGGAATTTGTGTCGGAAATTGCTAGCATAGGTCGGCTTCGTCACCGGAATTTGGTTATGTTACTTGGATGGTGTCGTCGCAGAGGTGACCTTTTGCTTGTGTATGATTACATGGCGAATGGAAGCTTGGACAAGTACTTGTTTGAAGATTCAGAATTTGTGTTAAGTTGGGAACAGAGGTTTAAGATAATAAAGGGGGTTGCTTCAGGTCTTTTGTATCTACATGAAGGTTATGAGCAAGTGGTAATCCATAGAGATGTTAAAGCTAGCAATGTGCTGTTAGATTTTGAACTCAATGGAAGATTAGGTGATTTTGGCTTGGCAAGATTGTATGAACACGGTGCTAATCCCGGCACGACAAGAGTGGTGGGAACATTAGGCTATTTGGCACCGGAGTTACCTAGGACAGGACGAGCAACAACAAGCTCCGATGTTTTTGCATTCGGGGCACTTCTTCTCGAGGTTGTTTGCGGAAGAAGGCCTATTGAACCTAAGGCATCACAAGATGAGTTGGTGTTGGTGGATTGGGTTTGGGAAAGGTTCAAAGAAGGAAGAGCATTTGAAGTAGTTGACCCTAAATTGAATGGTGATTTTGTTGAAACTGAGGTAATGATGGTGTTGAAATTAGGTTTGATATGTTCAAATGATGTTCCAACTATAAGGCCTAGTATGAGACAAGTAGTGAGGATTTTGGATGGAGAAGTTGAGTTACCAAATGAAATGAGAAAGCCAGGAGGTATTGATTCACAAGAGGGGTTTGATGAATTCTTGAATTCTCTTGGAACTTCTAATTCATTTGATCAAATGAGTTCAAGCACTTATAATGGAAAGAGAGATATTGATAATACTAGTTTTATCACTTTTGGTAATTCACCTCAATCATCACTTCTCAATGCTAGAGGAGAAACAAGGGAAAGTTGCGCACATGTGCACTATATCAACGAAATATGCACGGAGTGGAAGACTCAAGCCAAACAAGTGGCCCCACGTACCCCTCATGACTATACGGAGTTCCATAAAGATTCGGTGTTAGACATCTTGCTCAACGAGGATGCTGATATCGGCCTGATTCCTCTTAATGCGAGTGATGATCCGGTTGATCGAAAACCTAGTGGTGTCGATAATTTTGTCGAGATCAAACCGCCGAAGGTTGAAGCTTCAGTGAAAGTTGAAGCTCCATTAAATGAGGGTTTAAACCTGCAATTCCAAGATGCTTGTAAGAATTTTCCAAAGTTTCTTCATTATGTTCAAACTACCATTTTGGACACTGTTAAGGACAAAATAGTGAGGGCATGGACAGACCTTGTGTTACATCTTGGGTTGGGGGGTAATATGTCTAGACAAGCCATGAACAATATTTTTTTGGAAGAAGAGCGTGCTAGGCAAACCTTATGCATGGACAAGAAGATTTGCGGTTGTGTTCAAATGACATCGTATGGGATACCTTGTGCATGCTTCATTGCTATGAAAATCCGTCACAACAAGCCTATTCGATTGGATGAGATAGACAATCATTGGCATAAGTTATATATGGGTGAAGAAGAAACATTTCCGGAGTCCACAATGATGTCACCACCTCCAAGAAAGGAACCAACCAAAGGAACCAAGAAAAAAATCAAATCTAAACCAAAAGTGGAATCGACACGTTGGATCCCATCTTCGTGGGAGACTATTGATTCTCAATTTCCTGATAGTCAATCTTCATCCCTAAAAAAATATTCAGTATCTAAAAAAAAATGTGCTCGCCTTGGCATTTCTCCATGTTCGTCGATTCCTACGCCAAATCGGGTTCCAACGCCAACTCGGGTTCCAAAGCCTATCTTGGTTCCAACAACTTATGATCCATCGAGTCCTATGTATTACATGCCAAAATTCATGAGACCATGTATTGAGAAAATTGTGGATGTTAGAGGCGATGTGAATTGTGGGTTTTGGGCTATAGCTGAGTCCTTGGGTTTGACGGAAGAAAGTCATGTTATGGTGCGGAGAGCATTTATTCGAGAGGTGAAAGAGTATAGGAACGACTACATGCGGATATATGCGGGCGTGGGCCGTTATATCTACATCTTGAAAGGATTGCATCCTCCCGAAATTGACAGTGGTTTTGCACCTCTAGATAAATGGTTGACATTGCCGGATATGGGTCACATCATTGCAACTTATTACAATAGGTATGTGGTAGAGATAACTTGCTTTGAAATTGGAATTTCAGAGACTTTTTTCCCAATTAGAGGTAGACCTCCGATTAACCTGAAAAGCCACATCATGTGTCTTGGTTTAATCCCAAATAATTTTGTTCTTCTTTTTTTGAAAGATGATTGCCCACTACCTCTATCTTCTACAAAGTGGAATATACACAAGAGCGAAGATGCGGCATCATTTGAAGATGAGTTTTTGGATCAACACGATCGTTTCCAAACACTCATGAATATTGAAAGAGGAGAGAGACCGTTATCACCCAAAAAGATTCAAACCAACAAAATCCAATTTTGTCATGTGACATATTCTGCTTTCAAGAAGACAATTAAGGTTTTCTTAACTCCGACGGACATTTTGGATGACTTGAAGACACAACTGAAAAAATACTTTGTGTTTCATGGTGAAGATCATAGTACATCGCATGTATTTGTACTGCAGCTGCATTATGATCTTGGGGAGGGAGAGGAAGACATGTGGAAAACGGTTTATTATCCTAAGCTTATTGAGGACAATAGTGACATAGGATTAATGTTTAGGAGGTTTGTTGAAAATAATGTGTTATATCTACATGTTCGTTCCAACTACAGGTGCATAGAATGTTCACGAGAAATTTGA

Protein sequence

>MsG0780038837.01.T01

MVMPTHLQFLIPFSFFFFLPVLSQVDQLLYTGFKDVGPKNLTLNGIAEIQKNGIIRLTNETSRLLGHAFYPQPFQIKNKTTGKVFSFSSSFALACVPEYPKLGGHGMAFTIVPSKDLKALPSQYLGLLNSSDVGNFSNHLFAVEFDTVQDFEFGDINDNHVGIDINSMRSNASITASYYSDDDMVHNISIKGGKPILVWVDYDSSLNLISVTLSPTSNKPKKPILSFHMDLSPLFLDTMYVGFSASTGLLASSHYVLGWSFKINGPAPFLDLSKLPQLPHPKKKHTSLILGVSLGSALIVLCSMAFGFYIYRKIKNADVIEAWELEVGPHRYTYQELKTATKGFKEKQLLGQGGFGKVYNGILPKSKIQVAVKRVSHESKQGLREFVSEIASIGRLRHRNLVMLLGWCRRRGDLLLVYDYMANGSLDKYLFEDSEFVLSWEQRFKIIKGVASGLLYLHEGYEQVVIHRDVKASNVLLDFELNGRLGDFGLARLYEHGANPGTTRVVGTLGYLAPELPRTGRATTSSDVFAFGALLLEVVCGRRPIEPKASQDELVLVDWVWERFKEGRAFEVVDPKLNGDFVETEVMMVLKLGLICSNDVPTIRPSMRQVVRILDGEVELPNEMRKPGGIDSQEGFDEFLNSLGTSNSFDQMSSSTYNGKRDIDNTSFITFGNSPQSSLLNARGETRESCAHVHYINEICTEWKTQAKQVAPRTPHDYTEFHKDSVLDILLNEDADIGLIPLNASDDPVDRKPSGVDNFVEIKPPKVEASVKVEAPLNEGLNLQFQDACKNFPKFLHYVQTTILDTVKDKIVRAWTDLVLHLGLGGNMSRQAMNNIFLEEERARQTLCMDKKICGCVQMTSYGIPCACFIAMKIRHNKPIRLDEIDNHWHKLYMGEEETFPESTMMSPPPRKEPTKGTKKKIKSKPKVESTRWIPSSWETIDSQFPDSQSSSLKKYSVSKKKCARLGISPCSSIPTPNRVPTPTRVPKPILVPTTYDPSSPMYYMPKFMRPCIEKIVDVRGDVNCGFWAIAESLGLTEESHVMVRRAFIREVKEYRNDYMRIYAGVGRYIYILKGLHPPEIDSGFAPLDKWLTLPDMGHIIATYYNRYVVEITCFEIGISETFFPIRGRPPINLKSHIMCLGLIPNNFVLLFLKDDCPLPLSSTKWNIHKSEDAASFEDEFLDQHDRFQTLMNIERGERPLSPKKIQTNKIQFCHVTYSAFKKTIKVFLTPTDILDDLKTQLKKYFVFHGEDHSTSHVFVLQLHYDLGEGEEDMWKTVYYPKLIEDNSDIGLMFRRFVENNVLYLHVRSNYRCIECSREI*