AlfalfaGEDB | MsG0180006143.01

M. sativa cultivar ZhongmuNo.1 / MsG0180006143.01

KEGG: K11373
GO: GO:0002098 GO:0005515 GO:0033588
PFAM: PF04762

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180006143.01.T01	XP_013470430.1	97.201	1322	37	0	1	1322	1	1322	0	2660

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180006143.01.T01	Q9FNA4	58.458	1336	521	14	1	1320	1	1318	0	1541

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180006143.01.T01	A0A072VSS4	97.201	1322	37	0	1	1322	1	1322	0.0	2660

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047825.01	MsG0180006143.01	0.819410	1.178441e-52	9.061251e-50
MsG0080048765.01	MsG0180006143.01	0.849739	2.664619e-60	5.100969e-57
MsG0080048785.01	MsG0180006143.01	0.859020	5.519465e-63	1.436781e-59
MsG0080048856.01	MsG0180006143.01	0.817332	3.483330e-52	2.529385e-49
MsG0080048964.01	MsG0180006143.01	0.814313	1.641638e-51	1.097856e-48
MsG0180000065.01	MsG0180006143.01	0.845637	3.586460e-59	6.015208e-56
MsG0180000101.01	MsG0180006143.01	0.803748	3.006754e-49	1.523027e-46
MsG0180000142.01	MsG0180006143.01	0.830560	2.742374e-55	2.899488e-52
MsG0180000195.01	MsG0180006143.01	0.804501	2.095370e-49	1.082094e-46
MsG0180000235.01	MsG0180006143.01	0.852317	4.996420e-61	1.040080e-57

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PPI

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Gene1	Gene2	Type
MsG0180006143.01	MsG0880043816.01	PPI
MsG0180006143.01	MsG0580024188.01	PPI
MsG0180006143.01	MsG0880043946.01	PPI
MsG0180006143.01	MsG0180004250.01	PPI
MsG0180006143.01	MsG0180000101.01	PPI
MsG0180006143.01	MsG0880043944.01	PPI
MsG0580024787.01	MsG0180006143.01	PPI
MsG0880042379.01	MsG0180006143.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180006143.01.T01	MTR_1g115300	97.201	1322	37	0	1	1322	1	1322	0.0	2660
MsG0180006143.01.T01	MTR_1g115300	97.215	1149	32	0	174	1322	1	1149	0.0	2313

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180006143.01.T01	AT5G13680	58.458	1336	521	14	1	1320	1	1318	0.0	1541

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Find 282 sgRNAs with CRISPR-Local

Find 455 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGCCCTGGATTACTG+TGG	0.690388	1:+100664403	MsG0180006143.01.T01:CDS
AAACACTGTTTCAGTATGAG+AGG	0.584971	1:-100662511	None:intergenic
AAACGAGTATGCACATACTT+TGG	0.480825	1:+100666078	MsG0180006143.01.T01:CDS
AAACTTGGGAAGAACTAGAG+GGG	0.708599	1:+100662469	MsG0180006143.01.T01:CDS
AAACTTTCAATTGTCTCAGA+TGG	0.522114	1:+100666012	MsG0180006143.01.T01:CDS
AAAGCATCTTCAAGTAATGG+AGG	0.600148	1:-100663728	None:intergenic
AAATGCAGCTAACTGGTTCT+TGG	0.362564	1:-100662403	None:intergenic
AAATTTATTAATTTCTGCAA+GGG	0.541462	1:+100664444	MsG0180006143.01.T01:CDS
AAATTTCCCCGTAGACAACA+AGG	0.606549	1:+100663604	MsG0180006143.01.T01:CDS
AACATCTCCACAGTAATCCA+GGG	0.635223	1:-100664410	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCTAGGTAAAATTGAAC+AGG	-	Chr1:100665447-100665466	None:intergenic	30.0%
AAACTTTCAATTGTCTCAGA+TGG	+	Chr1:100666012-100666031	MsG0180006143.01.T01:CDS	30.0%
AAAGTGGGAAACAACATAAA+AGG	-	Chr1:100660984-100661003	None:intergenic	30.0%
AAATATTATCCAGACTTGGA+CGG	-	Chr1:100665327-100665346	None:intergenic	30.0%
AGTATCTAATTTCATGCTTC+AGG	-	Chr1:100662125-100662144	None:intergenic	30.0%
AGTTGAAGGTGATTTATGTT+TGG	+	Chr1:100660738-100660757	MsG0180006143.01.T01:intron	30.0%
ATCACGGAAACTTAAGATTT+GGG	+	Chr1:100661792-100661811	MsG0180006143.01.T01:CDS	30.0%
ATCATCATAATAAGAATCGC+CGG	-	Chr1:100664065-100664084	None:intergenic	30.0%
ATTAATTTCTGCAAGGGATT+GGG	+	Chr1:100664450-100664469	MsG0180006143.01.T01:CDS	30.0%
ATTGCTACACAAAAAATCTC+AGG	-	Chr1:100665760-100665779	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	100660129	100666186	100660129	ID=MsG0180006143.01;Name=MsG0180006143.01
Chr1	mRNA	100660129	100666186	100660129	ID=MsG0180006143.01.T01;Parent=MsG0180006143.01;Name=MsG0180006143.01.T01;_AED=0.22;_eAED=0.22;_QI=0\|0\|0\|1\|1\|1\|4\|0\|1322
Chr1	exon	100660129	100660633	100660129	ID=MsG0180006143.01.T01:exon:11566;Parent=MsG0180006143.01.T01
Chr1	exon	100661704	100664749	100661704	ID=MsG0180006143.01.T01:exon:11567;Parent=MsG0180006143.01.T01
Chr1	exon	100665649	100665747	100665649	ID=MsG0180006143.01.T01:exon:11568;Parent=MsG0180006143.01.T01
Chr1	exon	100665868	100666186	100665868	ID=MsG0180006143.01.T01:exon:11569;Parent=MsG0180006143.01.T01
Chr1	CDS	100660129	100660633	100660129	ID=MsG0180006143.01.T01:cds;Parent=MsG0180006143.01.T01
Chr1	CDS	100661704	100664749	100661704	ID=MsG0180006143.01.T01:cds;Parent=MsG0180006143.01.T01
Chr1	CDS	100665649	100665747	100665649	ID=MsG0180006143.01.T01:cds;Parent=MsG0180006143.01.T01
Chr1	CDS	100665868	100666186	100665868	ID=MsG0180006143.01.T01:cds;Parent=MsG0180006143.01.T01

Gene Sequence

>MsG0180006143.01.T01

ATGAAAAACCTAAAACTCTTCCGTGAAGTTCCTTTACTTCTCCGATTAAACTCCGACGACGAAACTTTCCGATTCTCCGCCTTAGACATCGAACGCAACCGTCTCTTCTTCCTCTCTTCCCACAATTTCATCTACACTTCCCATCTCTCTTCCTTCCACCAAAAACAAGCTTGGAGTAACAACAACTCGTCATTATCTACTACTCATGCCATCGTTGATCTTGAACCTGATGATACCGTTACTTCCTTCGATTATCTCATGGAGAAAGAAGCGCTTCTACTTGGAACTTCGAACGGGCTTTTGTTGCTATTTGATGTTGATGCGAACGTGACTCAAGTTGTTGGTAATGTTGATGGCGGTGTTAATTGTATTTCGCTTAGTCCTGATGGTGAAGTTATTGCTGTAGTTACTGGTTTTGGTCAGGTTTTGGTCATGACTCATGATTGGGATTTGCTGTATGAAATATCACTCTTCGATGACAATGATGATGAAGGTCATCACGTAAATGGAGAAAACTTTATGGAGCAACATCCTATATCATGGCGAGGAGATGGAAAATACTTTGCTACGATGAGTATGTGTGGTTCTAATTTATCACGGAAACTTAAGATTTGGGAACGAGATTCAGGGGCATTACTTGCCTCTTCAGAGGAAAAAGCTTTTGCAGGAGCAGTTTTGGAGTGGATGCCCAGTGGTGCTAAAATTGCAGCTGTATATGATAGAAAAGCTGAAAATGAATCCCCCTCCATTGTTTTCTTTGAGAGAAATGGATTAGAAAGAAGCAAATTTAGTGTTGGTGAAGGAATTAATGCGAAAGTAAGATTTCTGAAGTGGAATTGCAGTTCTGATCTTCTTGCTGGTGTTGTTGAATGTGAAAATTATGAGGCTCTAAAGATATGGTATTTTAGCAACAATCATTGGTACCTGAAGCATGAAATTAGATACTTAAAGCAAGACGAAGTCAGGTTCATGTGGAATCAAGAAAAACCTTTGCAGTTGATTTGTTGGACTCTTGGTGGTCAGGTTACAGTTTACAATTTTGTTTGGATCACGGCTGTTACAGACAATTCCGTTGCACTAGTCATCGATGGCTCCAATATTCATGTAACACCACTTTCCTTATCCTTAATGCCGCCTCCTATGTACTTATTTAGCCTAACATTTTCTTCTCATGTACGGGGTATGGCAGTATACTGTAAAAACTCCAAGAACCAGTTAGCTGCATTTCTTTCAGATGGTAGTTTATGTGTTGTAGAGCTTCCATCAATTGAAACTTGGGAAGAACTAGAGGGGCAAGAATTCAGTGTTGAAGCCTCTCATACTGAAACAGTGTTTGGATCCACATTACATCTTGTATGGTTAGATTCACATACGCTGTTATCTGTTTCCCATTATGGTTTCAGTCACAGCAATGACTTATTCCAAAGCTCACTAAATGAGGGTGCACTTCGAGGCTTCTATTTGCAGGAAATAGAATTGGAATGTTCCGAGGATATTGTTCCAGGATTGCTGACATGTTCAGGTTGGAATGCAACAGTTTCTAAGCAAAATACACTTGAAGAGCTTGTTATTGGCATTGCTCCAAATCCTGCCAGTAAATATTCTGCATATATGCAGTTTTCTGATGGGAAAATAAACGAGTATTTATCGAAAATTGTCACTGGTGGCGGATCTTTGGAACAAGAATATCAAGGTTTTTCTGCAGCCTGCCCTCGGATGGATGTAGCGTTGGTCGGAAGTGCTGGCCAGTCAAAACCAGTGCTTTTTGGACTGGACGAGATTGGCAGATTGCATGCTAGCGGGGGGATAGTAGTTTGCAACAACTGCAGCAGTTTCTCATTTTACTCGAATTTGGCAGATCAAGTTGTGACACATCTAATTCTTGCAACTAAACAAGATCTGCTTTTTATTGTTGACATTGTCGATATATTTAATGGGGAGTTAGACTCAAAGTATGGGAATTTTGTCCGCAGTAACAGCAGAAAAAGGGAAGAAAATGAAAATTACATACATATATGGGAGAGAGGTGCTAAAATAGTTGGAGTTTTACATGGAGACGAAGCTGCCACTATACTACAAACTACTCGGGGAAACCTAGAATGTATATACCCTAGAAAATTGGTTTTGGTTTCTATCATTAATGCCTTAGTTCAAAAGCGATTTAGAGATGCATTACTCATGGTTAGGAGACATAGGATAGATTTCAATGTAATTGTTGATTACCGTGGTTGGCAAGCTTTTTCAGAGTCAGCTTTTGAATTTGTCAGGCAGGTCAACAATTTGGGTTACATAACTGAGTTTGTTTGTTCTGTAAAGAATGAAAATGTTATAGAGACACTCTACAAAAATCATGTGTCCGTTCCCTGTTCAGAGGTTGCTAATGTTATGCTAGCTGGAGGCCTCCAAAATTTCCCCGTAGACAACAAGGTTTCTTCAATTCTGATGGCCATAAGAAAAGCACTTGAAGACCATTTTACAGAAAGCCCTGCTAGGGAGCTTTGCATATTAACCACACTTGCTCGGAGTGAGCCTCCATTACTTGAAGATGCTTTAAAGAGAATAAAAGTTATCCGTGAAAAGGAGTTGTCTCATGCTGATGATCACAGGAGAATGACCTACCCTTCTGCTGAAGAAGCTTTGAAACATCTGTTGTGGTTGGCCGATGGGGATGCTGTCTATGATGCTGCTTTGGGTCTTTATGATTTAAAACTCACCGCTATTGTGGCATTGAATGCCCAAAAAGATCCAAAAGAATTTCTTCCTTTCTTGCAAGAGTTGGAGCGTATGCCTACACCATTAATGCAATACAATATCGACCTTAGGCTGAAAAGGTTCGAAAAGGCTCTCAGACATATTGCTTCTGCCGGCGATTCTTATTATGATGATTGTATGACACTGGTGAAGAAAAACCCTCAACTTTTCCCCTTGTCTCTTCAACTTTTTACTGACCCTGCTAAGAGGATGCCATTCCTTGAGGCATGGGGTGATTATCTTAGCGGTGAAAAATGCTTTGAAGATGCTGCAACAATTTACTTGTCCTGTTTCAATCTGGATAAGGCTCTTAAGTCTTATCGTGCTATTAATAACTGGAGTGGGGTGCTTACAGTTGCTGGGTTCCTTAATCTGGGAAAGGATGAATTACTGCATCTTGCCGGTGAGCTTTGCGAAGAACTTCAAGCACTTGGTAAGCCTGGTGAAGCTGCCAAAATTGCCCTGGATTACTGTGGAGATGTTAACTCTGGTGTAAATTTATTAATTTCTGCAAGGGATTGGGAGGAGGCTATGAGGGTTGTTTTTATGCATAGAAGAGAGGACTTAGTTAAGGTTGTGAAGGATGCATCTGTTGAATGTGCAAGCACACTTACCAATGAATATGAGGAAGGCTTAGAGAAAGTAGGGAAGTACTTGGCCCGTTACTTAGCTGTTCGACAAAGAAGGCTACTTCTCGCAGCAAAGCTCCAATCAGAGAAACGTGAAGGTAGTGATGTTGAAGATGATGCTGCTTCAGAGGCTAGCAGTAATTTTAGTGGAATGAGTGCATACACCACAGGGACCAGGAAAAGTTCTGCTGCTTCTACTCTTTCAGCTGCAACTACCAGGGCAAGAGATGCTAGGCGTCAGAGGAAAAGAGGAAAAATCCGTCCTGGGAGTGCTGATGAGGAGTTTGCGTTGGTGGATCATTTGAAAGGCATGTCTATGAGAGTGGAAGCAAGACGAGAGCTGAAATCTTTGTTGGTTTCCCTTATGATGTTTGGTGAGGGTGAAACTGCAAGGAAGCTACAGCAAATGGGGGAAAACTTTCAATTGTCTCAGATGGCAGCAGTCAGATTAGCTGAGGATACAATATCAAATGATACCATAAACGAGTATGCACATACTTTGGAGCAATATACCCGAAAAGTAAGGGATGAAATGCATGATTCAGAGGCTTTGTCGTGGCGGGTCAAAGTTTTTTTAAGCAACGAGTGA

Protein sequence

>MsG0180006143.01.T01

MKNLKLFREVPLLLRLNSDDETFRFSALDIERNRLFFLSSHNFIYTSHLSSFHQKQAWSNNNSSLSTTHAIVDLEPDDTVTSFDYLMEKEALLLGTSNGLLLLFDVDANVTQVVGNVDGGVNCISLSPDGEVIAVVTGFGQVLVMTHDWDLLYEISLFDDNDDEGHHVNGENFMEQHPISWRGDGKYFATMSMCGSNLSRKLKIWERDSGALLASSEEKAFAGAVLEWMPSGAKIAAVYDRKAENESPSIVFFERNGLERSKFSVGEGINAKVRFLKWNCSSDLLAGVVECENYEALKIWYFSNNHWYLKHEIRYLKQDEVRFMWNQEKPLQLICWTLGGQVTVYNFVWITAVTDNSVALVIDGSNIHVTPLSLSLMPPPMYLFSLTFSSHVRGMAVYCKNSKNQLAAFLSDGSLCVVELPSIETWEELEGQEFSVEASHTETVFGSTLHLVWLDSHTLLSVSHYGFSHSNDLFQSSLNEGALRGFYLQEIELECSEDIVPGLLTCSGWNATVSKQNTLEELVIGIAPNPASKYSAYMQFSDGKINEYLSKIVTGGGSLEQEYQGFSAACPRMDVALVGSAGQSKPVLFGLDEIGRLHASGGIVVCNNCSSFSFYSNLADQVVTHLILATKQDLLFIVDIVDIFNGELDSKYGNFVRSNSRKREENENYIHIWERGAKIVGVLHGDEAATILQTTRGNLECIYPRKLVLVSIINALVQKRFRDALLMVRRHRIDFNVIVDYRGWQAFSESAFEFVRQVNNLGYITEFVCSVKNENVIETLYKNHVSVPCSEVANVMLAGGLQNFPVDNKVSSILMAIRKALEDHFTESPARELCILTTLARSEPPLLEDALKRIKVIREKELSHADDHRRMTYPSAEEALKHLLWLADGDAVYDAALGLYDLKLTAIVALNAQKDPKEFLPFLQELERMPTPLMQYNIDLRLKRFEKALRHIASAGDSYYDDCMTLVKKNPQLFPLSLQLFTDPAKRMPFLEAWGDYLSGEKCFEDAATIYLSCFNLDKALKSYRAINNWSGVLTVAGFLNLGKDELLHLAGELCEELQALGKPGEAAKIALDYCGDVNSGVNLLISARDWEEAMRVVFMHRREDLVKVVKDASVECASTLTNEYEEGLEKVGKYLARYLAVRQRRLLLAAKLQSEKREGSDVEDDAASEASSNFSGMSAYTTGTRKSSAASTLSAATTRARDARRQRKRGKIRPGSADEEFALVDHLKGMSMRVEARRELKSLLVSLMMFGEGETARKLQQMGENFQLSQMAAVRLAEDTISNDTINEYAHTLEQYTRKVRDEMHDSEALSWRVKVFLSNE*