AlfalfaGEDB | MsG0880045765.01

M. sativa cultivar ZhongmuNo.1 / MsG0880045765.01

KEGG: K13448
GO: GO:0005509
PFAM: PF13833

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045765.01.T01	XP_003629506.1	97.561	82	2	0	9	90	107	188	1.11E-50	167

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045765.01.T01	Q8L3R2	54.444	90	36	1	6	90	115	204	7.07E-27	100

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045765.01.T01	G7LFJ5	97.561	82	2	0	9	90	107	188	5.31e-51	167

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047944.01	MsG0880045765.01	0.830751	2.461704e-55	2.617593e-52
MsG0080047957.01	MsG0880045765.01	0.838166	3.379198e-57	4.488376e-54
MsG0080047959.01	MsG0880045765.01	0.828435	9.005157e-55	8.950342e-52
MsG0080048065.01	MsG0880045765.01	0.814959	1.181161e-51	8.037555e-49
MsG0080048152.01	MsG0880045765.01	0.810834	9.462788e-51	5.764893e-48
MsG0080048404.01	MsG0880045765.01	0.855296	6.936966e-62	1.594128e-58
MsG0080048462.01	MsG0880045765.01	0.800882	1.170022e-48	5.509896e-46
MsG0080048463.01	MsG0880045765.01	0.840577	7.997209e-58	1.144031e-54
MsG0080048464.01	MsG0880045765.01	0.858333	8.852779e-63	2.251412e-59
MsG0080048515.01	MsG0880045765.01	0.822847	1.902376e-53	1.610981e-50

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045765.01.T01	MTR_8g078270	97.561	82	2	0	9	90	107	188	1.35e-54	167
MsG0880045765.01.T01	MTR_4g103655	52.941	85	35	2	7	89	58	139	4.13e-22	84.0
MsG0880045765.01.T01	MTR_6g023460	54.118	85	34	3	7	89	60	141	1.05e-21	82.8
MsG0880045765.01.T01	MTR_4g103630	52.941	85	35	2	7	89	58	139	1.15e-21	82.8
MsG0880045765.01.T01	MTR_4g103650	51.765	85	36	2	7	89	54	135	6.65e-21	80.5
MsG0880045765.01.T01	MTR_3g089070	46.988	83	43	1	7	89	58	139	7.63e-18	72.8
MsG0880045765.01.T01	MTR_3g089090	46.988	83	43	1	7	89	57	138	7.95e-18	72.8
MsG0880045765.01.T01	MTR_5g017510	32.530	83	55	1	7	89	101	182	7.92e-11	55.8
MsG0880045765.01.T01	MTR_5g017560	32.530	83	55	1	7	89	101	182	7.92e-11	55.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045765.01.T01	AT3G50770	54.444	90	36	1	6	90	115	204	7.21e-28	100
MsG0880045765.01.T01	AT3G01830	45.238	84	43	2	6	89	65	145	4.45e-19	76.3
MsG0880045765.01.T01	AT1G76650	41.975	81	46	1	9	89	97	176	8.42e-17	71.2
MsG0880045765.01.T01	AT1G76650	41.975	81	46	1	9	89	97	176	8.42e-17	71.2
MsG0880045765.01.T01	AT1G76650	41.975	81	46	1	9	89	87	166	9.01e-17	70.9
MsG0880045765.01.T01	AT5G42380	45.882	85	43	2	7	89	101	184	1.01e-15	68.6
MsG0880045765.01.T01	AT1G76640	42.169	83	44	2	10	89	77	158	2.79e-14	64.3

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Find 18 sgRNAs with CRISPR-Local

Find 19 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATCCTTTGCAACCCTTT+TGG	0.322939	8:-64013226	None:intergenic
AAGGTTGTATTACTCCAAAA+GGG	0.532412	8:+64013212	MsG0880045765.01.T01:CDS
AAGTTGATGAAAGGTGAAGG+AGG	0.624388	8:+64013130	MsG0880045765.01.T01:CDS
AATCCAACAGTTGTCACCGT+CGG	0.675394	8:-64013094	None:intergenic
ATAAATTACCTCGATGCCGA+CGG	0.561111	8:+64013078	None:intergenic
ATGCCGACGGTGACAACTGT+TGG	0.508987	8:+64013091	MsG0880045765.01.T01:CDS
ATTAAGTTGATGAAAGGTGA+AGG	0.540993	8:+64013127	MsG0880045765.01.T01:CDS
ATTTGATATTGATCATAATG+GGG	0.620450	8:+64013303	MsG0880045765.01.T01:CDS
CAAAGGATGTTGCAACGTCT+TGG	0.455200	8:+64013238	MsG0880045765.01.T01:CDS
CAATGAGTTTCATCAAATGA+TGG	0.411036	8:+64013336	MsG0880045765.01.T01:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	AAGGTTGTATTACTCCAAAA+GGG	+	Chr8:64013212-64013231	MsG0880045765.01.T01:CDS	30.0%
	CAATGAGTTTCATCAAATGA+TGG	+	Chr8:64013336-64013355	MsG0880045765.01.T01:CDS	30.0%
	GAAGGTTGTATTACTCCAAA+AGG	+	Chr8:64013211-64013230	MsG0880045765.01.T01:CDS	35.0%
	TTACTCCAAAAGGGTTGCAA+AGG	+	Chr8:64013221-64013240	MsG0880045765.01.T01:CDS	40.0%
	AATCCAACAGTTGTCACCGT+CGG	-	Chr8:64013097-64013116	None:intergenic	45.0%
	CAAAGGATGTTGCAACGTCT+TGG	+	Chr8:64013238-64013257	MsG0880045765.01.T01:CDS	45.0%
	TGCAACGTCTTGGAGATGAT+AGG	+	Chr8:64013248-64013267	MsG0880045765.01.T01:CDS	45.0%
	TTTGTGTGCGAGGAGAAAGA+AGG	+	Chr8:64013193-64013212	MsG0880045765.01.T01:CDS	45.0%
	ATGCCGACGGTGACAACTGT+TGG	+	Chr8:64013091-64013110	MsG0880045765.01.T01:CDS	55.0%
!	GCATTTGATATTGATCATAA+TGG	+	Chr8:64013301-64013320	MsG0880045765.01.T01:CDS	25.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	64013091	64013363	64013091	ID=MsG0880045765.01;Name=MsG0880045765.01
Chr8	mRNA	64013091	64013363	64013091	ID=MsG0880045765.01.T01;Parent=MsG0880045765.01;Name=MsG0880045765.01.T01;_AED=0.39;_eAED=0.39;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|90
Chr8	exon	64013091	64013363	64013091	ID=MsG0880045765.01.T01:exon:24320;Parent=MsG0880045765.01.T01
Chr8	CDS	64013091	64013363	64013091	ID=MsG0880045765.01.T01:cds;Parent=MsG0880045765.01.T01

Gene Sequence	>MsG0880045765.01.T01 ATGCCGACGGTGACAACTGTTGGATTTCATGATTTTATTAAGTTGATGAAAGGTGAAGGAGGAAGAGATGATGATAAAGATTTAAGAAAGGCTTTTGAGATGTTTGTGTGCGAGGAGAAAGAAGGTTGTATTACTCCAAAAGGGTTGCAAAGGATGTTGCAACGTCTTGGAGATGATAGGTCTTATGAAGAGTGTGTGGTTATGATTGATGCATTTGATATTGATCATAATGGGGTTCTTGATTTCAATGAGTTTCATCAAATGATGGCTTAA
Protein sequence	>MsG0880045765.01.T01 MPTVTTVGFHDFIKLMKGEGGRDDDKDLRKAFEMFVCEEKEGCITPKGLQRMLQRLGDDRSYEECVVMIDAFDIDHNGVLDFNEFHQMMA*