AlfalfaGEDB | MsG0280009395.01

M. sativa cultivar ZhongmuNo.1 / MsG0280009395.01

KEGG: -
GO: -
PFAM: PF13639

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009395.01.T01	XP_024632480.1	91.444	187	11	2	1	186	48	230	8.22E-92	277

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009395.01.T01	Q9D0C1	45.946	74	34	1	29	102	203	270	1.16E-16	79

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009395.01.T01	A0A072V812	91.444	187	11	2	1	186	48	230	3.93e-92	277

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047959.01	MsG0280009395.01	-0.822922	1.828080e-53	1.551315e-50
MsG0080048964.01	MsG0280009395.01	-0.805506	1.291862e-49	6.846278e-47
MsG0080049032.01	MsG0280009395.01	-0.800127	1.667575e-48	7.703617e-46
MsG0180000240.01	MsG0280009395.01	0.841922	3.541949e-58	5.283524e-55
MsG0180000470.01	MsG0280009395.01	-0.821939	3.091962e-53	2.551325e-50
MsG0180000503.01	MsG0280009395.01	-0.843840	1.093994e-58	1.733441e-55
MsG0180000546.01	MsG0280009395.01	-0.827823	1.264192e-54	1.234166e-51
MsG0180000550.01	MsG0280009395.01	-0.873237	1.718000e-67	7.402542e-64
MsG0180000669.01	MsG0280009395.01	-0.838363	3.007459e-57	4.018793e-54
MsG0180000679.01	MsG0280009395.01	-0.847666	1.000680e-59	1.791731e-56

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009395.01.T01	MTR_2g061790	91.444	187	11	2	1	186	48	230	9.96e-96	277
MsG0280009395.01.T01	MTR_1g095030	52.941	119	39	4	68	184	19	122	1.28e-26	98.6
MsG0280009395.01.T01	MTR_1g114320	34.437	151	92	2	28	178	166	309	1.25e-20	87.4
MsG0280009395.01.T01	MTR_7g074170	36.000	100	59	1	29	128	318	412	9.45e-20	86.3
MsG0280009395.01.T01	MTR_4g110100	46.429	84	40	1	29	112	333	411	1.19e-19	85.5
MsG0280009395.01.T01	MTR_2g097620	40.860	93	46	2	29	121	163	246	1.52e-18	82.0
MsG0280009395.01.T01	MTR_6g079660	43.529	85	43	1	28	112	207	286	1.82e-18	82.0
MsG0280009395.01.T01	MTR_1g114620	44.318	88	41	1	28	115	239	318	2.03e-18	81.6
MsG0280009395.01.T01	MTR_4g064570	44.000	75	36	1	28	102	154	222	9.07e-17	77.4
MsG0280009395.01.T01	MTR_6g016350	53.704	54	25	0	59	112	309	362	2.86e-16	75.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009395.01.T01	AT3G60080	39.316	117	52	3	38	143	144	252	4.35e-18	80.5
MsG0280009395.01.T01	AT5G01980	41.304	92	48	2	28	119	323	408	7.22e-17	77.8
MsG0280009395.01.T01	AT5G15820	44.000	75	37	1	28	102	263	332	9.84e-17	77.0
MsG0280009395.01.T01	AT3G56580	44.595	74	36	1	29	102	159	227	1.96e-16	75.9
MsG0280009395.01.T01	AT3G56580	44.595	74	36	1	29	102	159	227	1.96e-16	75.9
MsG0280009395.01.T01	AT3G56580	44.595	74	36	1	29	102	159	227	1.96e-16	75.9
MsG0280009395.01.T01	AT5G08139	34.783	92	50	2	16	102	264	350	4.13e-16	75.5
MsG0280009395.01.T01	AT2G40830	45.946	74	35	2	29	102	163	231	9.80e-16	73.9
MsG0280009395.01.T01	AT2G40830	45.946	74	35	2	29	102	163	231	9.80e-16	73.9
MsG0280009395.01.T01	AT2G40830	45.946	74	35	2	29	102	163	231	9.80e-16	73.9

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Find 49 sgRNAs with CRISPR-Local

Find 53 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAATTCCGCACCGACAAAG+AGG	0.599284	2:+51290522	None:intergenic
ACCTTACTCGATCCCTCAAA+CGG	0.473396	2:-51290669	MsG0280009395.01.T01:CDS
AGAAACGGTTTCCGTTGACG+AGG	0.647530	2:-51290622	MsG0280009395.01.T01:CDS
AGGGATTGTTGTTTCGGTGC+GGG	0.459559	2:+51290719	None:intergenic
AGTGAACTTGGCGGCGGTGG+TGG	0.415179	2:-51290303	MsG0280009395.01.T01:CDS
AGTGATGATGCTAGTGAACT+TGG	0.519447	2:-51290315	MsG0280009395.01.T01:CDS
ATGAAGAATCGGCGTCGTTT+TGG	0.271107	2:+51290799	None:intergenic
ATGCGCCGTTTGTAAAGAAA+CGG	0.509933	2:-51290637	MsG0280009395.01.T01:CDS
ATGCGGATTGTATTACTCCG+TGG	0.659920	2:-51290566	MsG0280009395.01.T01:CDS
ATTGTATTACTCCGTGGCTT+CGG	0.399609	2:-51290560	MsG0280009395.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTGATCATCTTTATCATG+CGG	-	Chr2:51290511-51290530	MsG0280009395.01.T01:CDS	30.0%
CTGCTTCATTCTAATGATTC+TGG	-	Chr2:51290743-51290762	MsG0280009395.01.T01:CDS	35.0%
CTTCATTCTAATGATTCTGG+TGG	-	Chr2:51290746-51290765	MsG0280009395.01.T01:CDS	35.0%
GATGAGGAAGATGATGTTAA+TGG	-	Chr2:51290617-51290636	MsG0280009395.01.T01:CDS	35.0%
GCATGATAAAGATGATCACA+AGG	+	Chr2:51290512-51290531	None:intergenic	35.0%
GGAAACCGTTTCTTTACAAA+CGG	+	Chr2:51290465-51290484	None:intergenic	35.0%
GTCGAAGAAAGATGAAGAAT+CGG	+	Chr2:51290309-51290328	None:intergenic	35.0%
ATGCGCCGTTTGTAAAGAAA+CGG	-	Chr2:51290457-51290476	MsG0280009395.01.T01:CDS	40.0%
ATTGTATTACTCCGTGGCTT+CGG	-	Chr2:51290534-51290553	MsG0280009395.01.T01:CDS	40.0%
CATTCTAATGATTCTGGTGG+TGG	-	Chr2:51290749-51290768	MsG0280009395.01.T01:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	51290278	51290838	51290278	ID=MsG0280009395.01;Name=MsG0280009395.01
Chr2	mRNA	51290278	51290838	51290278	ID=MsG0280009395.01.T01;Parent=MsG0280009395.01;Name=MsG0280009395.01.T01;_AED=0.49;_eAED=0.49;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|186
Chr2	exon	51290278	51290838	51290278	ID=MsG0280009395.01.T01:exon:9049;Parent=MsG0280009395.01.T01
Chr2	CDS	51290278	51290838	51290278	ID=MsG0280009395.01.T01:cds;Parent=MsG0280009395.01.T01

Gene Sequence

>MsG0280009395.01.T01

ATGGACTCACCTTTTTCCCAAAACGACGCCGATTCTTCATCTTTCTTCGACGTTGTTTTCCAAGACGCGCTTTTACTACTCACACCTCCCGCTAAATCCCGCACCGAAACAACAATCCCTACAGTAACCGTCACACAAACGCTTCTTACCTTACTCGATCCCTCAAACGGCGTCGTTATATGCGCCGTTTGTAAAGAAACGGTTTCCGTTGACGAGGAAGCGAAACAGCTTCCTTGTGATCATCTTTATCATGCGGATTGTATTACTCCGTGGCTTCGGATTCGAGCTTCTTGTCCTCTTTGTCGGTGCGGAATTGTGGAGGATGAAGAGGATGTGAATGATGAGGAAGATGATGTTAATGGTGGAGATGTGATGAGGGAGATGGTGATGCGCTTGTCGGAGTTGTCTGAGGATGATTTTTATGGATTGAGGATTACTCTGAATCACATTGCTTCACGTCATGCTCTGCTTCATTCTAATGATTCTGGTGGTGGTGAGAATAGTGATGATGCTAGTGAACTTGGCGGCGGTGGTGGTGGTGTAGATGGAGAAGAATCTTAA

Protein sequence

>MsG0280009395.01.T01

MDSPFSQNDADSSSFFDVVFQDALLLLTPPAKSRTETTIPTVTVTQTLLTLLDPSNGVVICAVCKETVSVDEEAKQLPCDHLYHADCITPWLRIRASCPLCRCGIVEDEEDVNDEEDDVNGGDVMREMVMRLSELSEDDFYGLRITLNHIASRHALLHSNDSGGGENSDDASELGGGGGGVDGEES*