AlfalfaGEDB | MsG0180000669.01

M. sativa cultivar ZhongmuNo.1 / MsG0180000669.01

KEGG: K13172
GO: -
PFAM: PF08312

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000669.01.T01	XP_013465758.2	95.58	905	39	1	1	904	1	905	0	1456

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000669.01.T01	Q7RYH7	36.111	144	83	2	1	138	1	141	4.76E-13	75.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000669.01.T01	A0A396JF91	95.580	905	39	1	1	904	1	905	0.0	1456

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047825.01	MsG0180000669.01	0.835194	1.934093e-56	2.347909e-53
MsG0080047912.01	MsG0180000669.01	0.819457	1.149602e-52	8.851751e-50
MsG0080048618.01	MsG0180000669.01	0.813379	2.637533e-51	1.719707e-48
MsG0080048843.01	MsG0180000669.01	0.810306	1.231020e-50	7.394244e-48
MsG0080048968.01	MsG0180000669.01	0.825181	5.391639e-54	4.878957e-51
MsG0180000152.01	MsG0180000669.01	0.808308	3.300614e-50	1.880840e-47
MsG0180000157.01	MsG0180000669.01	0.852429	4.642738e-61	9.698412e-58
MsG0180000267.01	MsG0180000669.01	0.802154	6.420094e-49	3.122174e-46
MsG0180000271.01	MsG0180000669.01	0.837109	6.308431e-57	8.112170e-54
MsG0180000546.01	MsG0180000669.01	0.858296	9.081095e-63	2.306922e-59

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000669.01.T01	MTR_1g010090	94.852	777	39	1	129	904	1	777	0.0	1182
MsG0180000669.01.T01	MTR_1g010100	100.000	112	0	0	1	112	1	112	5.15e-74	238

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000669.01.T01	AT3G49601	56.250	208	75	4	1	202	1	198	2.35e-55	202

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Find 255 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTTAAGAGATGAAGA+TGG	0.579544	1:+9516590	MsG0180000669.01.T01:CDS
AAACACTCACTTATCCATAT+TGG	0.373034	1:-9513691	None:intergenic
AAAGGGACGAGGAAGACCGC+CGG	0.575454	1:+9516561	MsG0180000669.01.T01:CDS
AAATGATAATGATTATAAAA+GGG	0.503477	1:+9516472	MsG0180000669.01.T01:CDS
AACAAAGACTAGAAGGATTG+AGG	0.533525	1:+9517051	MsG0180000669.01.T01:CDS
AACAATATGTACAACGGAAT+CGG	0.356790	1:+9513363	None:intergenic
AACCAGTAAAGCCTAGTAAG+AGG	0.471344	1:+9515658	MsG0180000669.01.T01:CDS
AACTCCCAAGAGAAAGTACA+AGG	0.620318	1:+9515392	MsG0180000669.01.T01:CDS
AAGAAAGAACTTAAGGGATG+AGG	0.478065	1:+9516766	MsG0180000669.01.T01:CDS
AAGAAAGAGCTTAAGGGATG+AGG	0.473531	1:+9516946	MsG0180000669.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGCTTAAGAGATGAAGA+TGG	+	Chr1:9516590-9516609	MsG0180000669.01.T01:CDS	30.0%
AAACACTCACTTATCCATAT+TGG	-	Chr1:9513694-9513713	None:intergenic	30.0%
AAGACAAACATGTTAAAAGG+CGG	+	Chr1:9515904-9515923	MsG0180000669.01.T01:CDS	30.0%
AAGGTTGCTGAAAATATGAA+GGG	+	Chr1:9513462-9513481	MsG0180000669.01.T01:CDS	30.0%
AATAAAGAACTCTAGGTATG+AGG	+	Chr1:9517195-9517214	MsG0180000669.01.T01:CDS	30.0%
AATGAAGATGATTCAAGAGA+TGG	+	Chr1:9516530-9516549	MsG0180000669.01.T01:CDS	30.0%
AATGAATTAACTGTTTCCAC+GGG	+	Chr1:9514163-9514182	MsG0180000669.01.T01:intron	30.0%
ATATGGGAGAGATTATAAAG+AGG	+	Chr1:9516127-9516146	MsG0180000669.01.T01:CDS	30.0%
ATGAAGAAAGGAAGAACTTA+AGG	+	Chr1:9516867-9516886	MsG0180000669.01.T01:CDS	30.0%
ATGAAGATAGAGATAGAGAT+AGG	+	Chr1:9516198-9516217	MsG0180000669.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	9513369	9517474	9513369	ID=MsG0180000669.01;Name=MsG0180000669.01
Chr1	mRNA	9513369	9517474	9513369	ID=MsG0180000669.01.T01;Parent=MsG0180000669.01;Name=MsG0180000669.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|0\|0\|1\|1\|1\|2\|0\|904
Chr1	exon	9513369	9513703	9513369	ID=MsG0180000669.01.T01:exon:1856;Parent=MsG0180000669.01.T01
Chr1	exon	9515095	9517474	9515095	ID=MsG0180000669.01.T01:exon:1855;Parent=MsG0180000669.01.T01
Chr1	CDS	9513369	9513703	9513369	ID=MsG0180000669.01.T01:cds;Parent=MsG0180000669.01.T01
Chr1	CDS	9515095	9517474	9515095	ID=MsG0180000669.01.T01:cds;Parent=MsG0180000669.01.T01

Gene Sequence

>MsG0180000669.01.T01

ATGTACAACGGAATCGGGTTACAAACCCCAAGAGGGTCTGGTACCAATGGGTACATTCAAAGCAACAAATTCTTCGTGAAGCCGAGAACTTCGAAGGTTGCTGAAAATATGAAGGGGTTTGAGGGAGATCAAGGTACTGCTGGTGTTAGTAGAAAGGCTAATAAAGAGATTCTTGAGCATGACCGAAAGCGGCAGATTCAGCTGAAGCTTGTTATTCTTGAAGATAAGCTGATTGATCAGGGTTATACTGAGGCTGAGATTGCGGAGAAGCTTGAGGAGGCGAGGAATAACTTGGAGGCTGCAGCTGATGAAAACGATGGATCCAATATGGATAAGATTTCTGATACACAGAGTCACCAAATTGCTGCTAGAAAGGAAAAACAGATGGAAACATTGAAAGCTGCTCTTGGCATAATATCTGAAGCTGATGAATTAAATACAGATGGGAATGATGAAGGGGCTGGAAACGAAGGGAAAGATGTTTCTTTTGCTGATGCAAAACATATTTTGAAACCTGAACATTCCTTTTTGGACAGAGATTTCAGTCGGAAGAAACAATTGGAGGAAGTTCAAAAAGAAGAAACTGCTAAGAAAAAGAGTGTTAAAGACACAAAGCGCCACAAGAAGGGTGGAACTCCCAAGAGAAAGTACAAGGATGATTCATCTGATTCAGATAGCAGTACGGATGATGAGAAAACAGGTAGAAGGAAGAACAGTAGAGTGAGTACCGACAGTAGTGATGAATCTGATTCTGATAGTGATGCTAAGAGGAAGGTCAAGGCTAAAAAGAAGCAGAGCACATCTAAGCACCGCAAGAAAGGCAGGGTGGATGACAGTGATGATACTGATTTCTCTTCTGATAGTGAGGATAGCAAGAGTGCAAGAAAAAGTAATAAAAAACCAGTAAAGCCTAGTAAGAGGCATGATTCAGATGGAGATTCTGATCATCATGAAGGCGTGCCCAGGCGTAGGACTAGTGAAGTGAAGAGGCATGCAAAGACGAGCAAACATCATGATTCCGAAGAGGAATCTGATGCTGATAGTGAGGAAGAGAAACATGGTAGACTTGAGAAGCAGAAAACAAGGAGGTATGGTTCTATTGATGCAGACTCTGGTAGAGGCAGTGTTAGGCATGCTTCAGGACAAGACAAACATGTTAAAAGGCGGACATACTCTTCCTCTGATGAGAGTAGCAGTGATAGTGAAACTGGCAGCAGTGATAGTGATCGCAGGTATGGAAGAACTAGAAAAGTTGGGTCTGTAGCGAAGAGAAGTGAGCCAAAGGAGGAAATAAATGACAGAGGTAATGCTGCAGGAAAAGGGAAAAATAGTGCCAAGGTTGATGGATTGGATTCTTTAAGAAAATCATATGGGAGAGATTATAAAGAGGGTCCGGATTCTAGAAGTCAAACAATAGCCAAGGGTGAAAAGAAAATTGATGAAGATAGAGATAGAGATAGGGAGACTGTCAAATTTGCTAAGCATGATGGACAAGATAGGAAGTTTGGTAAAACAGAGTCTGAGTCAAAATCTCGAATTTATCAAAATGAAAATGAAGAAAGAGATGGTTATTCTAAATCAGCTAGGATCAGAGGGAATGATAATGAAACTTCTGATCAGAGAGGCAGAAATTATAACAGGGATGTTGAATCACAATCTGTTGGACGAATTGATCGGAATAGGGAGGATTATGAAACAAGAAGGAAGGGAAGAAATGATAATGATTATAAAAGGGATCAGGATGACCATGAAGAAAAAAAACATGGAAGGAATGAAGATGATTCAAGAGATGGAAAGCATAAAAGGGACGAGGAAGACCGCCGGGAGAAGAAAAGCTTAAGAGATGAAGATGGTCGTGGAGAGAGAAGGCATGGAAAGGATGAAGATTATCCTACAGGAAGAAAGCACTTGAGGGATGAAGATGATCACGGAGAAAGAAAGATCAGAAGGATTGAGGATGAACGTGCAGGAAGGAACACCTTGAGGGATGGGGATGATTATGGAGAAAGAAAGAACTTAAGGGATGAGGGTGGCAGTAGAGAAAGAAAGAACTCTCTGGATGGCGATGTCTGTGGAGAGAAAAGAAGCTCTAGAGACGGGGATGATTATGAAGAAAGGAAGAACTTAAGGGATGGCAATGGCCGTGGAGAGAAAAGGAGCTCTAGGGATGGGGATGATTATGGAGAAAGAAAGAGCTTAAGGGATGAGGGTGGCCGAGGAGAAAGAAAGAACTCTCGGGATGGTGATGGCCGAGGAGAGAAGAGCTCTAGGGATGTGGGTGATCTTAGAGAAACAAAGACTAGAAGGATTGAGGATGATCGTACAGGAAGAAAGACCTTGAGGGATGAAGACGATATTGGAGAAAGAAAGCACTTAAGGGATGAGGGTCGTCATAGAGAAGCACAAAACAGAAGGGATGGGGATGGCAGTGTAGAAATAAAGAACTCTAGGTATGAGGATGATCGCAAAGAAAGGAAGAACTCAAGGGAAGAGGATGACCGCAAAGAAAGAAAGAACTCAAGGGAAGATGATGATCACAGAGTGAGAAAGAGCTCAAGGGATGAGGATGTTCGTGGGGAAAGAAAGCACAGAGGGGATGATGAGTATCATGGAGAAAGAAAGCGCAGAAGGGATGATGATGATGGGCATGGAGAAAGAAGGCATTATAGAAGGGATGATGATGATCGTGGAGAAAGAAAGCACAGAAGGGAGTAG

Protein sequence

>MsG0180000669.01.T01

MYNGIGLQTPRGSGTNGYIQSNKFFVKPRTSKVAENMKGFEGDQGTAGVSRKANKEILEHDRKRQIQLKLVILEDKLIDQGYTEAEIAEKLEEARNNLEAAADENDGSNMDKISDTQSHQIAARKEKQMETLKAALGIISEADELNTDGNDEGAGNEGKDVSFADAKHILKPEHSFLDRDFSRKKQLEEVQKEETAKKKSVKDTKRHKKGGTPKRKYKDDSSDSDSSTDDEKTGRRKNSRVSTDSSDESDSDSDAKRKVKAKKKQSTSKHRKKGRVDDSDDTDFSSDSEDSKSARKSNKKPVKPSKRHDSDGDSDHHEGVPRRRTSEVKRHAKTSKHHDSEEESDADSEEEKHGRLEKQKTRRYGSIDADSGRGSVRHASGQDKHVKRRTYSSSDESSSDSETGSSDSDRRYGRTRKVGSVAKRSEPKEEINDRGNAAGKGKNSAKVDGLDSLRKSYGRDYKEGPDSRSQTIAKGEKKIDEDRDRDRETVKFAKHDGQDRKFGKTESESKSRIYQNENEERDGYSKSARIRGNDNETSDQRGRNYNRDVESQSVGRIDRNREDYETRRKGRNDNDYKRDQDDHEEKKHGRNEDDSRDGKHKRDEEDRREKKSLRDEDGRGERRHGKDEDYPTGRKHLRDEDDHGERKIRRIEDERAGRNTLRDGDDYGERKNLRDEGGSRERKNSLDGDVCGEKRSSRDGDDYEERKNLRDGNGRGEKRSSRDGDDYGERKSLRDEGGRGERKNSRDGDGRGEKSSRDVGDLRETKTRRIEDDRTGRKTLRDEDDIGERKHLRDEGRHREAQNRRDGDGSVEIKNSRYEDDRKERKNSREEDDRKERKNSREDDDHRVRKSSRDEDVRGERKHRGDDEYHGERKRRRDDDDGHGERRHYRRDDDDRGERKHRRE*