AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010654.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010654.01.T01 MTR_2g089670 81.741 471 78 2 1 471 21 483 0.0 766
MsG0280010654.01.T01 MTR_2g089765 75.523 478 104 7 2 471 16 488 0.0 723
MsG0280010654.01.T01 MTR_8g012750 65.145 482 146 13 2 469 3 476 0.0 585
MsG0280010654.01.T01 MTR_2g089665 63.719 441 53 4 1 440 1 335 0.0 528
MsG0280010654.01.T01 MTR_7g015860 44.330 485 224 12 2 467 5 462 5.29e-123 367
MsG0280010654.01.T01 MTR_3g028210 36.722 482 270 11 1 468 7 467 1.02e-93 291
MsG0280010654.01.T01 MTR_2g089650 36.722 482 266 14 2 468 9 466 4.88e-91 285
MsG0280010654.01.T01 MTR_7g014330 38.351 485 242 15 1 461 1 452 1.13e-89 281
MsG0280010654.01.T01 MTR_6g015815 36.920 474 272 10 3 468 9 463 1.69e-86 273
MsG0280010654.01.T01 MTR_6g015850 36.478 477 269 10 2 468 8 460 1.98e-86 273
MsG0280010654.01.T01 MTR_7g014230 37.238 478 253 13 3 461 5 454 4.57e-83 264
MsG0280010654.01.T01 MTR_2g089755 35.622 466 254 14 25 468 37 478 1.62e-81 260
MsG0280010654.01.T01 MTR_3g087640 35.258 485 270 15 3 465 10 472 2.97e-80 257
MsG0280010654.01.T01 MTR_6g015830 35.417 480 273 11 2 468 8 463 3.55e-80 256
MsG0280010654.01.T01 MTR_7g014250 35.670 485 255 15 1 461 1 452 1.69e-79 254
MsG0280010654.01.T01 MTR_2g089735 34.989 443 254 11 39 466 39 462 9.82e-78 250
MsG0280010654.01.T01 MTR_7g014200 34.298 484 278 16 2 467 9 470 3.54e-76 246
MsG0280010654.01.T01 MTR_6g015320 33.475 469 283 10 7 468 11 457 1.30e-73 239
MsG0280010654.01.T01 MTR_7g014160 34.568 486 275 15 2 465 9 473 1.40e-73 239
MsG0280010654.01.T01 MTR_6g015315 34.483 435 262 8 39 468 39 455 6.45e-70 229
MsG0280010654.01.T01 MTR_7g014610 33.197 488 282 14 2 465 8 475 4.69e-68 225
MsG0280010654.01.T01 MTR_7g013850 31.646 474 267 17 26 465 30 480 1.14e-61 209
MsG0280010654.01.T01 MTR_7g014620 31.957 460 260 12 21 465 11 432 1.32e-55 191
MsG0280010654.01.T01 MTR_7g014360 30.713 407 231 10 71 466 21 387 6.69e-52 180
MsG0280010654.01.T01 MTR_3g435300 36.458 288 152 11 3 279 4 271 5.95e-43 153
MsG0280010654.01.T01 MTR_6g015310 28.609 381 191 10 74 443 23 333 5.45e-33 128
MsG0280010654.01.T01 MTR_2g089745 75.309 81 20 0 391 471 3 83 5.90e-33 120
MsG0280010654.01.T01 MTR_7g014670 35.602 191 120 2 276 465 71 259 2.86e-31 121
MsG0280010654.01.T01 MTR_7g014630 32.414 290 162 11 2 276 9 279 8.86e-31 122
MsG0280010654.01.T01 MTR_7g014310 28.446 341 179 10 110 448 29 306 1.05e-30 121
MsG0280010654.01.T01 MTR_7g014180 37.989 179 96 6 2 176 7 174 3.88e-26 104
MsG0280010654.01.T01 MTR_8g041770 27.543 403 246 13 22 417 27 390 3.80e-23 102
MsG0280010654.01.T01 MTR_4g022670 25.829 422 274 16 2 417 4 392 4.30e-20 92.8
MsG0280010654.01.T01 MTR_4g022720 26.214 412 248 14 19 417 18 386 4.96e-20 92.8
MsG0280010654.01.T01 MTR_3g101900 23.414 457 287 16 25 459 30 445 1.51e-19 91.3
MsG0280010654.01.T01 MTR_4g094835 26.186 485 264 23 2 450 4 430 9.77e-19 89.0
MsG0280010654.01.T01 MTR_7g026860 25.610 410 256 14 19 417 18 389 1.99e-18 87.8
MsG0280010654.01.T01 MTR_3g088420 27.294 425 233 19 14 417 15 384 2.75e-17 84.3
MsG0280010654.01.T01 MTR_2g064495 24.312 436 273 19 42 463 39 431 3.68e-17 84.0
MsG0280010654.01.T01 MTR_3g102010 24.025 487 282 18 2 455 7 438 1.05e-16 82.8
MsG0280010654.01.T01 MTR_7g014210 39.130 115 68 2 323 435 24 138 1.44e-16 77.4
MsG0280010654.01.T01 MTR_6g045553 25.053 475 263 18 25 454 35 461 4.70e-16 80.9
MsG0280010654.01.T01 MTR_3g101930 23.202 431 262 16 48 454 56 441 9.21e-16 79.7
MsG0280010654.01.T01 MTR_7g085930 23.952 501 307 17 1 468 5 464 1.12e-15 79.7
MsG0280010654.01.T01 MTR_3g101970 22.645 499 288 21 2 469 6 437 3.25e-15 77.8
MsG0280010654.01.T01 MTR_3g435290 35.000 120 75 2 346 465 1 117 3.57e-15 72.4
MsG0280010654.01.T01 MTR_8g079710 23.467 375 228 12 62 417 59 393 4.30e-15 77.8
MsG0280010654.01.T01 MTR_7g114560 22.135 384 247 13 42 416 47 387 9.36e-15 76.6
MsG0280010654.01.T01 MTR_7g014340 59.155 71 27 2 1 70 1 70 9.65e-15 70.5
MsG0280010654.01.T01 MTR_7g014205 38.136 118 53 3 321 433 18 120 1.41e-14 70.5
MsG0280010654.01.T01 MTR_4g094828 22.512 422 254 18 21 417 25 398 2.43e-14 75.5
MsG0280010654.01.T01 MTR_7g014220 59.375 64 25 1 17 80 10 72 2.29e-13 65.9
MsG0280010654.01.T01 MTR_8g079970 22.436 468 301 14 2 457 3 420 3.62e-13 71.6
MsG0280010654.01.T01 MTR_8g096530 24.519 416 263 15 61 469 58 429 4.14e-13 71.6
MsG0280010654.01.T01 MTR_3g101960 22.672 494 278 21 2 454 6 436 5.91e-13 70.9
MsG0280010654.01.T01 MTR_7g114550 22.328 421 265 15 9 416 16 387 1.23e-12 70.1
MsG0280010654.01.T01 MTR_7g085990 23.197 513 300 17 1 470 1 462 5.03e-12 68.2
MsG0280010654.01.T01 MTR_4g022760 25.135 370 226 15 19 377 18 347 6.00e-12 67.8
MsG0280010654.01.T01 MTR_3g049150 26.780 295 170 12 145 417 129 399 6.68e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010654.01.T01 AT1G03940 38.223 484 260 14 3 470 9 469 4.69e-103 316
MsG0280010654.01.T01 AT1G03495 39.377 353 185 12 4 347 10 342 8.23e-70 226
MsG0280010654.01.T01 AT3G29670 33.613 476 275 16 2 465 3 449 1.82e-69 228
MsG0280010654.01.T01 AT5G61160 32.068 474 278 13 2 461 3 446 1.05e-62 211
MsG0280010654.01.T01 AT5G39090 34.468 470 265 17 2 460 5 442 2.04e-62 209
MsG0280010654.01.T01 AT3G29680 32.479 468 281 11 2 461 3 443 3.10e-61 207
MsG0280010654.01.T01 AT3G29635 31.447 477 289 14 2 465 3 454 1.02e-58 200
MsG0280010654.01.T01 AT3G29590 31.601 481 264 17 2 461 8 444 2.08e-56 194
MsG0280010654.01.T01 AT5G39080 30.595 487 287 18 2 466 5 462 8.59e-56 192
MsG0280010654.01.T01 AT5G39050 29.897 485 296 14 2 467 10 469 1.06e-50 179
MsG0280010654.01.T01 AT3G48720 22.170 424 295 8 39 462 41 429 4.74e-17 83.6
MsG0280010654.01.T01 AT3G29690 28.481 158 107 2 311 467 28 180 3.67e-16 77.0
MsG0280010654.01.T01 AT3G50270 24.601 439 257 17 4 417 8 397 1.33e-15 79.3
MsG0280010654.01.T01 AT3G50280 25.172 437 252 18 5 417 7 392 1.45e-15 79.0
MsG0280010654.01.T01 AT5G67150 25.118 422 275 19 4 417 7 395 2.66e-15 78.2
MsG0280010654.01.T01 AT5G41040 21.671 383 244 11 56 425 63 402 4.36e-13 71.6
MsG0280010654.01.T01 AT5G41040 21.671 383 244 11 56 425 79 418 4.84e-13 71.2
MsG0280010654.01.T01 AT1G31490 23.316 386 240 12 43 417 43 383 3.47e-12 68.6
MsG0280010654.01.T01 AT3G29720 31.443 194 111 7 101 290 26 201 4.35e-12 65.9

Find 97 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATCATTTCATGAAATTT+TGG 0.059044 2:+73004697 MsG0280010654.01.T01:CDS
GGAGGGGTGTTATGGGAATT+TGG 0.229278 2:-73004420 None:intergenic
TCACTTTCTTCGACATTTCA+TGG 0.242024 2:+73004244 MsG0280010654.01.T01:CDS
TCTAGTCTACTTCATATTCT+TGG 0.285884 2:+73005106 MsG0280010654.01.T01:CDS
ATTCACAAGATGCTCTAAAT+TGG 0.287826 2:+73004523 MsG0280010654.01.T01:CDS
AACTCGTTTGTAGTGGTTGC+TGG 0.296286 2:+73005350 MsG0280010654.01.T01:CDS
GATGTTTATGAGACTGATTT+TGG 0.310385 2:+73005386 MsG0280010654.01.T01:CDS
TGCACTGCATCAGATTTCTT+TGG 0.315346 2:-73005419 None:intergenic
ATGATGAGGTTGGAGGAAAA+AGG 0.329263 2:-73004393 None:intergenic
TAAGCACTCCATCTCTTTCA+TGG 0.346789 2:-73004803 None:intergenic
TTGTAACATGTTCCTTGATT+TGG 0.350808 2:+73005033 MsG0280010654.01.T01:CDS
GTATATAAGGAGGGGTGTTA+TGG 0.354673 2:-73004428 None:intergenic
TTTAAGAGTGATGATTTGTT+AGG 0.354935 2:+73005281 MsG0280010654.01.T01:CDS
TCTTGTAAGTTGGTGAGTTT+AGG 0.362354 2:-73004840 None:intergenic
TTTAATGATTCACTATAATC+AGG 0.363977 2:-73005320 None:intergenic
AGGTGGAATTGAGGTTGGTT+TGG 0.381023 2:+73005490 MsG0280010654.01.T01:CDS
CAGATAGAGAAGCCAGAGTT+TGG 0.386262 2:-73004636 None:intergenic
GAAGAAGTGTTGGAGGGTTA+AGG 0.387404 2:-73004370 None:intergenic
GTATGAGGTGAAGGCAAGTT+AGG 0.400483 2:-73004558 None:intergenic
GGTTGGTGATGGAAGTGAAT+TGG 0.400909 2:-73004211 None:intergenic
GTTGGTGATGGAAGTGAATT+GGG 0.408787 2:-73004210 None:intergenic
TATATAAGGAGGGGTGTTAT+GGG 0.421407 2:-73004427 None:intergenic
ATTTGGAGGGATGATGAGGT+TGG 0.424629 2:-73004403 None:intergenic
GGAAAGTGAGTGTTTGAGAA+TGG 0.424878 2:-73004349 None:intergenic
GAATGGGAAGTGTTGTTTGT+AGG 0.432621 2:-73004332 None:intergenic
GAAGCCAGAGTTTGGTAGAA+TGG 0.432626 2:-73004628 None:intergenic
TCATCAAGGTAACGTATATA+AGG 0.436544 2:-73004441 None:intergenic
AAACTAAAGAGATGGGTTGT+TGG 0.438015 2:+73004972 MsG0280010654.01.T01:CDS
TCTCTTTCTGATTGTAGAGA+TGG 0.439448 2:+73005464 MsG0280010654.01.T01:CDS
GTTGAAGTCTGCTGAAGATT+CGG 0.441740 2:-73004487 None:intergenic
GATGAGTTGGATGAGGAAAA+TGG 0.445046 2:-73004305 None:intergenic
ATAAAGAGAGATGAGTTAGT+TGG 0.446078 2:+73005206 MsG0280010654.01.T01:CDS
GTCTCATAAACATCAAGTTT+AGG 0.448315 2:-73005377 None:intergenic
AAAGTGAGAGGGAGAGTGGT+TGG 0.459506 2:-73004228 None:intergenic
TACCATACAAAACCAAATCA+AGG 0.462671 2:-73005045 None:intergenic
GGTGGAGGTGGAATTGAGGT+TGG 0.463005 2:+73005485 MsG0280010654.01.T01:CDS
ATATTGTATTTCTTGTAAGT+TGG 0.464671 2:-73004850 None:intergenic
GAAAGTGAGTGTTTGAGAAT+GGG 0.469129 2:-73004348 None:intergenic
TTGGTGAGTTTAGGAGCCGT+TGG 0.469411 2:-73004831 None:intergenic
CTTTCTGATTGTAGAGATGG+TGG 0.471103 2:+73005467 MsG0280010654.01.T01:CDS
GTTGTTCTTTATAGATATTG+AGG 0.473062 2:-73005541 None:intergenic
GCAGTGCATATTGATTCGTT+CGG 0.475920 2:+73005434 MsG0280010654.01.T01:CDS
GAAGAAAGTGAGAGGGAGAG+TGG 0.476197 2:-73004232 None:intergenic
AGAGGGAGAGTGGTTGGTGA+TGG 0.482203 2:-73004222 None:intergenic
CAACAACACAGTTATGTTGA+AGG 0.488066 2:+73004158 None:intergenic
GGGAATTTGGAGGGATGATG+AGG 0.494796 2:-73004407 None:intergenic
GATGGAAGTGAATTGGGTGG+TGG 0.495893 2:-73004204 None:intergenic
GGGATTGTTGTGGCTTCAAA+CGG 0.500064 2:+73005236 MsG0280010654.01.T01:CDS
TGGAGGGATGATGAGGTTGG+AGG 0.507278 2:-73004400 None:intergenic
TACATGTATCGTTCCTCTCA+TGG 0.508285 2:+73004593 MsG0280010654.01.T01:CDS
GTTTGTAGGAAGTGATGAGT+TGG 0.516421 2:-73004318 None:intergenic
TGGTAGAATGGTGATTTGAA+TGG 0.518937 2:-73004616 None:intergenic
ACTCGTTTGTAGTGGTTGCT+GGG 0.521923 2:+73005351 MsG0280010654.01.T01:CDS
GGGGTGTTATGGGAATTTGG+AGG 0.522455 2:-73004417 None:intergenic
TGGTGAGTTTAGGAGCCGTT+GGG 0.523739 2:-73004830 None:intergenic
AAGCACTCCATCTCTTTCAT+GGG 0.531994 2:-73004802 None:intergenic
AAGTTCAGAAACTAAAGAGA+TGG 0.535160 2:+73004964 MsG0280010654.01.T01:CDS
GATTGTAGAGATGGTGGAGG+TGG 0.541712 2:+73005473 MsG0280010654.01.T01:CDS
AGGTTGGTTTGGTTCTTGAG+AGG 0.549471 2:+73005501 MsG0280010654.01.T01:CDS
TGAAGATTCGGCAACGGTGA+AGG 0.551527 2:-73004475 None:intergenic
ACCACTACAAACGAGTTACC+TGG 0.560014 2:-73005344 None:intergenic
TACAACCATGTCGCTGCAGA+CGG 0.561212 2:+73004666 MsG0280010654.01.T01:CDS
CTTCCTTCCCATGAAAGAGA+TGG 0.561446 2:+73004795 MsG0280010654.01.T01:CDS
AGTTCAGAAACTAAAGAGAT+GGG 0.565348 2:+73004965 MsG0280010654.01.T01:CDS
ATCACCATTCTACCAAACTC+TGG 0.574194 2:+73004624 MsG0280010654.01.T01:CDS
CAAGGTAACGTATATAAGGA+GGG 0.577627 2:-73004437 None:intergenic
ACTCCATCTCTTTCATGGGA+AGG 0.579240 2:-73004798 None:intergenic
AATTGGGTGGTGGTGCAACT+TGG 0.579309 2:-73004194 None:intergenic
AGATGGTGGAGGTGGAATTG+AGG 0.584627 2:+73005481 MsG0280010654.01.T01:CDS
AGGAAGTGATGAGTTGGATG+AGG 0.585446 2:-73004312 None:intergenic
CAAAGTAAACGTGATTGCAC+TGG 0.586639 2:+73005077 MsG0280010654.01.T01:CDS
ACCAGGTAACTCGTTTGTAG+TGG 0.587043 2:+73005343 MsG0280010654.01.T01:CDS
GGGTGTTATGGGAATTTGGA+GGG 0.588819 2:-73004416 None:intergenic
TCAAGGTAACGTATATAAGG+AGG 0.593641 2:-73004438 None:intergenic
TGCATCTCGAACGAGACTTG+TGG 0.601182 2:-73004895 None:intergenic
TCACCTCATACAGAACAAAA+CGG 0.603095 2:+73004570 MsG0280010654.01.T01:CDS
GTCTGCTGAAGATTCGGCAA+CGG 0.604958 2:-73004481 None:intergenic
CAGCGACATGGTTGTAAGTG+AGG 0.605491 2:-73004659 None:intergenic
ATTTACCGTCTGCAGCGACA+TGG 0.609324 2:-73004671 None:intergenic
AAAAGGGAAGAAGTGTTGGA+GGG 0.615109 2:-73004376 None:intergenic
GGTGATGGAAGTGAATTGGG+TGG 0.622854 2:-73004207 None:intergenic
AGATGCAGCTTACGCTAACA+AGG 0.622869 2:+73004911 MsG0280010654.01.T01:CDS
TCTGATTGTAGAGATGGTGG+AGG 0.625713 2:+73005470 MsG0280010654.01.T01:CDS
TCATGGGAAGGAAGATCAAG+AGG 0.626174 2:-73004786 None:intergenic
TTGTCTTGCATCTTATGCTG+TGG 0.635139 2:+73005181 MsG0280010654.01.T01:CDS
AAATGTCGAAGAAAGTGAGA+GGG 0.639421 2:-73004239 None:intergenic
GAAATGTCGAAGAAAGTGAG+AGG 0.646541 2:-73004240 None:intergenic
AAGGCAAGTTAGGAACAAGA+TGG 0.656225 2:-73004548 None:intergenic
AGGAGATAGAGTCTTCATCA+AGG 0.656629 2:-73004455 None:intergenic
GTGATTTGAATGGCCATGAG+AGG 0.670330 2:-73004606 None:intergenic
TATAGTGAATCATTAAAACC+AGG 0.671327 2:+73005326 MsG0280010654.01.T01:CDS
TGGAGTGCTTAAACACCCAA+CGG 0.672231 2:+73004815 MsG0280010654.01.T01:CDS
TGGGAAGGAAGATCAAGAGG+CGG 0.672634 2:-73004783 None:intergenic
AAGGTAACGTATATAAGGAG+GGG 0.677863 2:-73004436 None:intergenic
CATCTTGTGAATCAGATACG+AGG 0.681815 2:-73004512 None:intergenic
GAAGAAGATACGTTTAACAG+CGG 0.689203 2:-73004280 None:intergenic
ACAACAAAAGTTGACATGTG+CGG 0.758347 2:-73005014 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAAATACAATATTTTGTTT+TGG + Chr2:73004860-73004879 MsG0280010654.01.T01:CDS 15.0%
!! ATATTGTATTTCTTGTAAGT+TGG - Chr2:73004853-73004872 None:intergenic 20.0%
!! TTTAATGATTCACTATAATC+AGG - Chr2:73005323-73005342 None:intergenic 20.0%
!!! CAATTTCCAAAATAAGTTTT+TGG - Chr2:73005164-73005183 None:intergenic 20.0%
!!! TCATCATTTCATGAAATTTT+GGG + Chr2:73004698-73004717 MsG0280010654.01.T01:CDS 20.0%
!!! TCATTACCAAAAACTTATTT+TGG + Chr2:73005155-73005174 MsG0280010654.01.T01:CDS 20.0%
!!! TTCATCATTTCATGAAATTT+TGG + Chr2:73004697-73004716 MsG0280010654.01.T01:CDS 20.0%
! ATGAGTTAGTTGGAAAAAAT+GGG + Chr2:73005216-73005235 MsG0280010654.01.T01:CDS 25.0%
! GTTGTTCTTTATAGATATTG+AGG - Chr2:73005544-73005563 None:intergenic 25.0%
! TATAGTGAATCATTAAAACC+AGG + Chr2:73005326-73005345 MsG0280010654.01.T01:CDS 25.0%
!!! ATATTTTGTTTTGGAAGTCA+TGG + Chr2:73004869-73004888 MsG0280010654.01.T01:CDS 25.0%
!!! GTTGTTATTGTTTTTTGCTA+TGG - Chr2:73004739-73004758 None:intergenic 25.0%
!!! TTTAAGAGTGATGATTTGTT+AGG + Chr2:73005281-73005300 MsG0280010654.01.T01:CDS 25.0%
AAGTTCAGAAACTAAAGAGA+TGG + Chr2:73004964-73004983 MsG0280010654.01.T01:CDS 30.0%
AGTTCAGAAACTAAAGAGAT+GGG + Chr2:73004965-73004984 MsG0280010654.01.T01:CDS 30.0%
ATAAAGAGAGATGAGTTAGT+TGG + Chr2:73005206-73005225 MsG0280010654.01.T01:CDS 30.0%
GATGAGTTAGTTGGAAAAAA+TGG + Chr2:73005215-73005234 MsG0280010654.01.T01:CDS 30.0%
GTCTCATAAACATCAAGTTT+AGG - Chr2:73005380-73005399 None:intergenic 30.0%
TACCATACAAAACCAAATCA+AGG - Chr2:73005048-73005067 None:intergenic 30.0%
TCATCAAGGTAACGTATATA+AGG - Chr2:73004444-73004463 None:intergenic 30.0%
TCTAGTCTACTTCATATTCT+TGG + Chr2:73005106-73005125 MsG0280010654.01.T01:CDS 30.0%
TTGTAACATGTTCCTTGATT+TGG + Chr2:73005033-73005052 MsG0280010654.01.T01:CDS 30.0%
! ATTCACAAGATGCTCTAAAT+TGG + Chr2:73004523-73004542 MsG0280010654.01.T01:CDS 30.0%
!! GATGTTTATGAGACTGATTT+TGG + Chr2:73005386-73005405 MsG0280010654.01.T01:CDS 30.0%
!! TTATGAGACTGATTTTGGAT+GGG + Chr2:73005391-73005410 MsG0280010654.01.T01:CDS 30.0%
!! TTTATGAGACTGATTTTGGA+TGG + Chr2:73005390-73005409 MsG0280010654.01.T01:CDS 30.0%
!!! TTCCTTGATTTGGTTTTGTA+TGG + Chr2:73005043-73005062 MsG0280010654.01.T01:CDS 30.0%
AAATGTCGAAGAAAGTGAGA+GGG - Chr2:73004242-73004261 None:intergenic 35.0%
AAGGTAACGTATATAAGGAG+GGG - Chr2:73004439-73004458 None:intergenic 35.0%
ACAACAAAAGTTGACATGTG+CGG - Chr2:73005017-73005036 None:intergenic 35.0%
CAAGGTAACGTATATAAGGA+GGG - Chr2:73004440-73004459 None:intergenic 35.0%
GAAAGTGAGTGTTTGAGAAT+GGG - Chr2:73004351-73004370 None:intergenic 35.0%
GAAGAAGATACGTTTAACAG+CGG - Chr2:73004283-73004302 None:intergenic 35.0%
TCAAGGTAACGTATATAAGG+AGG - Chr2:73004441-73004460 None:intergenic 35.0%
TCACCTCATACAGAACAAAA+CGG + Chr2:73004570-73004589 MsG0280010654.01.T01:CDS 35.0%
TCACTTTCTTCGACATTTCA+TGG + Chr2:73004244-73004263 MsG0280010654.01.T01:CDS 35.0%
TCTCTTTCTGATTGTAGAGA+TGG + Chr2:73005464-73005483 MsG0280010654.01.T01:CDS 35.0%
TGGAAAAAATGGGATTGTTG+TGG + Chr2:73005226-73005245 MsG0280010654.01.T01:CDS 35.0%
TGGTAGAATGGTGATTTGAA+TGG - Chr2:73004619-73004638 None:intergenic 35.0%
! TTTTGTTCTGTATGAGGTGA+AGG - Chr2:73004570-73004589 None:intergenic 35.0%
!! AAACTAAAGAGATGGGTTGT+TGG + Chr2:73004972-73004991 MsG0280010654.01.T01:CDS 35.0%
!! TATATAAGGAGGGGTGTTAT+GGG - Chr2:73004430-73004449 None:intergenic 35.0%
!! TATGAGACTGATTTTGGATG+GGG + Chr2:73005392-73005411 MsG0280010654.01.T01:CDS 35.0%
!! TCTTGTAAGTTGGTGAGTTT+AGG - Chr2:73004843-73004862 None:intergenic 35.0%
AAGCACTCCATCTCTTTCAT+GGG - Chr2:73004805-73004824 None:intergenic 40.0%
AAGGCAAGTTAGGAACAAGA+TGG - Chr2:73004551-73004570 None:intergenic 40.0%
AGGAGATAGAGTCTTCATCA+AGG - Chr2:73004458-73004477 None:intergenic 40.0%
ATCACCATTCTACCAAACTC+TGG + Chr2:73004624-73004643 MsG0280010654.01.T01:CDS 40.0%
ATGATGAGGTTGGAGGAAAA+AGG - Chr2:73004396-73004415 None:intergenic 40.0%
CAAAGTAAACGTGATTGCAC+TGG + Chr2:73005077-73005096 MsG0280010654.01.T01:CDS 40.0%
CATCTTGTGAATCAGATACG+AGG - Chr2:73004515-73004534 None:intergenic 40.0%
CTTTCTGATTGTAGAGATGG+TGG + Chr2:73005467-73005486 MsG0280010654.01.T01:CDS 40.0%
GAAATGTCGAAGAAAGTGAG+AGG - Chr2:73004243-73004262 None:intergenic 40.0%
GGAAAGTGAGTGTTTGAGAA+TGG - Chr2:73004352-73004371 None:intergenic 40.0%
GTTGAAGTCTGCTGAAGATT+CGG - Chr2:73004490-73004509 None:intergenic 40.0%
GTTTGTAGGAAGTGATGAGT+TGG - Chr2:73004321-73004340 None:intergenic 40.0%
TAAGCACTCCATCTCTTTCA+TGG - Chr2:73004806-73004825 None:intergenic 40.0%
TACATGTATCGTTCCTCTCA+TGG + Chr2:73004593-73004612 MsG0280010654.01.T01:CDS 40.0%
TGATGAGGTTGGAGGAAAAA+GGG - Chr2:73004395-73004414 None:intergenic 40.0%
TGCACTGCATCAGATTTCTT+TGG - Chr2:73005422-73005441 None:intergenic 40.0%
TTGTCTTGCATCTTATGCTG+TGG + Chr2:73005181-73005200 MsG0280010654.01.T01:CDS 40.0%
! AGGAAAAAGGGAAGAAGTGT+TGG - Chr2:73004383-73004402 None:intergenic 40.0%
! GATGAGTTGGATGAGGAAAA+TGG - Chr2:73004308-73004327 None:intergenic 40.0%
!! AAAAAGGGAAGAAGTGTTGG+AGG - Chr2:73004380-73004399 None:intergenic 40.0%
!! AAAAGGGAAGAAGTGTTGGA+GGG - Chr2:73004379-73004398 None:intergenic 40.0%
!! GAATGGGAAGTGTTGTTTGT+AGG - Chr2:73004335-73004354 None:intergenic 40.0%
!! GCAGTGCATATTGATTCGTT+CGG + Chr2:73005434-73005453 MsG0280010654.01.T01:CDS 40.0%
!! GTACCGTTTTGTTCTGTATG+AGG - Chr2:73004576-73004595 None:intergenic 40.0%
!! GTATATAAGGAGGGGTGTTA+TGG - Chr2:73004431-73004450 None:intergenic 40.0%
!! GTTGGTGATGGAAGTGAATT+GGG - Chr2:73004213-73004232 None:intergenic 40.0%
!! TGCTATGGCTTTTGAAAGAG+AGG - Chr2:73004724-73004743 None:intergenic 40.0%
AACTCGTTTGTAGTGGTTGC+TGG + Chr2:73005350-73005369 MsG0280010654.01.T01:CDS 45.0%
ACCACTACAAACGAGTTACC+TGG - Chr2:73005347-73005366 None:intergenic 45.0%
ACCAGGTAACTCGTTTGTAG+TGG + Chr2:73005343-73005362 MsG0280010654.01.T01:CDS 45.0%
ACTCCATCTCTTTCATGGGA+AGG - Chr2:73004801-73004820 None:intergenic 45.0%
ACTCGTTTGTAGTGGTTGCT+GGG + Chr2:73005351-73005370 MsG0280010654.01.T01:CDS 45.0%
AGATGCAGCTTACGCTAACA+AGG + Chr2:73004911-73004930 MsG0280010654.01.T01:CDS 45.0%
ATTTGGAGGGATGATGAGGT+TGG - Chr2:73004406-73004425 None:intergenic 45.0%
CAGATAGAGAAGCCAGAGTT+TGG - Chr2:73004639-73004658 None:intergenic 45.0%
CTTCCTTCCCATGAAAGAGA+TGG + Chr2:73004795-73004814 MsG0280010654.01.T01:CDS 45.0%
GAAGCCAGAGTTTGGTAGAA+TGG - Chr2:73004631-73004650 None:intergenic 45.0%
GGGATTGTTGTGGCTTCAAA+CGG + Chr2:73005236-73005255 MsG0280010654.01.T01:CDS 45.0%
GTATGAGGTGAAGGCAAGTT+AGG - Chr2:73004561-73004580 None:intergenic 45.0%
GTGATTTGAATGGCCATGAG+AGG - Chr2:73004609-73004628 None:intergenic 45.0%
TCATGGGAAGGAAGATCAAG+AGG - Chr2:73004789-73004808 None:intergenic 45.0%
! AGGAAGTGATGAGTTGGATG+AGG - Chr2:73004315-73004334 None:intergenic 45.0%
! AGGTGGAATTGAGGTTGGTT+TGG + Chr2:73005490-73005509 MsG0280010654.01.T01:CDS 45.0%
! GGGTGTTATGGGAATTTGGA+GGG - Chr2:73004419-73004438 None:intergenic 45.0%
! TCTGATTGTAGAGATGGTGG+AGG + Chr2:73005470-73005489 MsG0280010654.01.T01:CDS 45.0%
! TGGAGTGCTTAAACACCCAA+CGG + Chr2:73004815-73004834 MsG0280010654.01.T01:CDS 45.0%
!! AGGTTGGTTTGGTTCTTGAG+AGG + Chr2:73005501-73005520 MsG0280010654.01.T01:CDS 45.0%
!! GAAGAAGTGTTGGAGGGTTA+AGG - Chr2:73004373-73004392 None:intergenic 45.0%
!! GGTTGGTGATGGAAGTGAAT+TGG - Chr2:73004214-73004233 None:intergenic 45.0%
AAAGTGAGAGGGAGAGTGGT+TGG - Chr2:73004231-73004250 None:intergenic 50.0%
ATTTACCGTCTGCAGCGACA+TGG - Chr2:73004674-73004693 None:intergenic 50.0%
CAGCGACATGGTTGTAAGTG+AGG - Chr2:73004662-73004681 None:intergenic 50.0%
GAAGAAAGTGAGAGGGAGAG+TGG - Chr2:73004235-73004254 None:intergenic 50.0%
GATGGAAGTGAATTGGGTGG+TGG - Chr2:73004207-73004226 None:intergenic 50.0%
GGGAATTTGGAGGGATGATG+AGG - Chr2:73004410-73004429 None:intergenic 50.0%
GTCTGCTGAAGATTCGGCAA+CGG - Chr2:73004484-73004503 None:intergenic 50.0%
TACAACCATGTCGCTGCAGA+CGG + Chr2:73004666-73004685 MsG0280010654.01.T01:CDS 50.0%
TGAAGATTCGGCAACGGTGA+AGG - Chr2:73004478-73004497 None:intergenic 50.0%
TGCATCTCGAACGAGACTTG+TGG - Chr2:73004898-73004917 None:intergenic 50.0%
TGGGAAGGAAGATCAAGAGG+CGG - Chr2:73004786-73004805 None:intergenic 50.0%
TGGTGAGTTTAGGAGCCGTT+GGG - Chr2:73004833-73004852 None:intergenic 50.0%
TTGGTGAGTTTAGGAGCCGT+TGG - Chr2:73004834-73004853 None:intergenic 50.0%
! AATTGGGTGGTGGTGCAACT+TGG - Chr2:73004197-73004216 None:intergenic 50.0%
! GGGGTGTTATGGGAATTTGG+AGG - Chr2:73004420-73004439 None:intergenic 50.0%
!! AGATGGTGGAGGTGGAATTG+AGG + Chr2:73005481-73005500 MsG0280010654.01.T01:CDS 50.0%
!! GATTGTAGAGATGGTGGAGG+TGG + Chr2:73005473-73005492 MsG0280010654.01.T01:CDS 50.0%
!! GGAGGGGTGTTATGGGAATT+TGG - Chr2:73004423-73004442 None:intergenic 50.0%
!! GGTGATGGAAGTGAATTGGG+TGG - Chr2:73004210-73004229 None:intergenic 50.0%
GGTGGAGGTGGAATTGAGGT+TGG + Chr2:73005485-73005504 MsG0280010654.01.T01:CDS 55.0%
TGGAGGGATGATGAGGTTGG+AGG - Chr2:73004403-73004422 None:intergenic 55.0%
!! AGAGGGAGAGTGGTTGGTGA+TGG - Chr2:73004225-73004244 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr2 gene 73004171 73005586 73004171 ID=MsG0280010654.01;Name=MsG0280010654.01
Chr2 mRNA 73004171 73005586 73004171 ID=MsG0280010654.01.T01;Parent=MsG0280010654.01;Name=MsG0280010654.01.T01;_AED=0.03;_eAED=0.03;_QI=0|-1|0|1|-1|1|1|0|471
Chr2 exon 73004171 73005586 73004171 ID=MsG0280010654.01.T01:exon:15368;Parent=MsG0280010654.01.T01
Chr2 CDS 73004171 73005586 73004171 ID=MsG0280010654.01.T01:cds;Parent=MsG0280010654.01.T01
Gene Sequence

>MsG0280010654.01.T01

ATGTTGAAGGTAATTGAACATAGCCAAGTTGCACCACCACCCAATTCACTTCCATCACCAACCACTCTCCCTCTCACTTTCTTCGACATTTCATGGCTTTACTGTCAATCCGCTGTTAAACGTATCTTCTTCTACCATTTTCCTCATCCAACTCATCACTTCCTACAAACAACACTTCCCATTCTCAAACACTCACTTTCCTTAACCCTCCAACACTTCTTCCCTTTTTCCTCCAACCTCATCATCCCTCCAAATTCCCATAACACCCCTCCTTATATACGTTACCTTGATGAAGACTCTATCTCCTTCACCGTTGCCGAATCTTCAGCAGACTTCAACATCCTCGTATCTGATTCACAAGATGCTCTAAATTGGCACCATCTTGTTCCTAACTTGCCTTCACCTCATACAGAACAAAACGGTACATGTATCGTTCCTCTCATGGCCATTCAAATCACCATTCTACCAAACTCTGGCTTCTCTATCTGCCTCACTTACAACCATGTCGCTGCAGACGGTAAATCACTTCATCATTTCATGAAATTTTGGGCCTCTCTTTCAAAAGCCATAGCAAAAAACAATAACAACAATAATTTGTCTCTTGAATACTCTCCGCCTCTTGATCTTCCTTCCCATGAAAGAGATGGAGTGCTTAAACACCCAACGGCTCCTAAACTCACCAACTTACAAGAAATACAATATTTTGTTTTGGAAGTCATGGAATCCACAAGTCTCGTTCGAGATGCAGCTTACGCTAACAAGGTACGAACTAGTTTAGTATTGAGTCGTGAAGAAGTTCAGAAACTAAAGAGATGGGTTGTTGGTAAAAGTAAAGAAACAACACCGCACATGTCAACTTTTGTTGTAACATGTTCCTTGATTTGGTTTTGTATGGTAAAATCAGAGCAAAGTAAACGTGATTGCACTGGTGATGATCTAGTCTACTTCATATTCTTGGCAGATTGTCGTGATCGTTCTGAATTTTCATTACCAAAAACTTATTTTGGAAATTGTCTTGCATCTTATGCTGTGGCTATAAAGAGAGATGAGTTAGTTGGAAAAAATGGGATTGTTGTGGCTTCAAACGGTATTGAAAAGAAGATAAGAGATTTTAAGAGTGATGATTTGTTAGGAGTTGAAACGTTGATACCTGATTATAGTGAATCATTAAAACCAGGTAACTCGTTTGTAGTGGTTGCTGGGTCACCTAAACTTGATGTTTATGAGACTGATTTTGGATGGGGAAAACCAAAGAAATCTGATGCAGTGCATATTGATTCGTTCGGTTCGATTTCTCTTTCTGATTGTAGAGATGGTGGAGGTGGAATTGAGGTTGGTTTGGTTCTTGAGAGGTCTCAAATGACTAATTTCCTCAATATCTATAAAGAACAACTTAGTGATATTTGTAGCATCTGA
Protein sequence

>MsG0280010654.01.T01

MLKVIEHSQVAPPPNSLPSPTTLPLTFFDISWLYCQSAVKRIFFYHFPHPTHHFLQTTLPILKHSLSLTLQHFFPFSSNLIIPPNSHNTPPYIRYLDEDSISFTVAESSADFNILVSDSQDALNWHHLVPNLPSPHTEQNGTCIVPLMAIQITILPNSGFSICLTYNHVAADGKSLHHFMKFWASLSKAIAKNNNNNNLSLEYSPPLDLPSHERDGVLKHPTAPKLTNLQEIQYFVLEVMESTSLVRDAAYANKVRTSLVLSREEVQKLKRWVVGKSKETTPHMSTFVVTCSLIWFCMVKSEQSKRDCTGDDLVYFIFLADCRDRSEFSLPKTYFGNCLASYAVAIKRDELVGKNGIVVASNGIEKKIRDFKSDDLLGVETLIPDYSESLKPGNSFVVVAGSPKLDVYETDFGWGKPKKSDAVHIDSFGSISLSDCRDGGGGIEVGLVLERSQMTNFLNIYKEQLSDICSI*