AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780036589.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036589.01.T01 MTR_7g014200 94.280 472 27 0 1 472 1 472 0.0 910
MsG0780036589.01.T01 MTR_7g014160 72.385 478 123 4 1 471 1 476 0.0 711
MsG0780036589.01.T01 MTR_7g014610 73.125 480 118 5 1 471 1 478 0.0 695
MsG0780036589.01.T01 MTR_7g014620 64.758 454 133 5 21 471 6 435 0.0 560
MsG0780036589.01.T01 MTR_7g013850 58.385 483 180 9 6 471 5 483 0.0 536
MsG0780036589.01.T01 MTR_7g014630 67.224 299 90 2 1 291 1 299 9.00e-140 406
MsG0780036589.01.T01 MTR_7g014230 42.644 469 248 11 7 467 2 457 2.83e-113 342
MsG0780036589.01.T01 MTR_6g015320 42.489 466 247 10 7 468 6 454 1.47e-112 340
MsG0780036589.01.T01 MTR_7g014330 41.667 468 252 11 10 469 3 457 3.41e-112 339
MsG0780036589.01.T01 MTR_6g015315 43.696 460 245 8 10 468 6 452 1.20e-111 337
MsG0780036589.01.T01 MTR_6g015850 42.634 448 232 10 26 468 30 457 2.42e-108 329
MsG0780036589.01.T01 MTR_6g015830 42.889 450 231 11 26 468 30 460 6.16e-108 328
MsG0780036589.01.T01 MTR_7g014250 41.113 467 254 11 10 468 3 456 8.98e-108 327
MsG0780036589.01.T01 MTR_6g015815 41.895 475 251 12 3 468 2 460 9.39e-108 328
MsG0780036589.01.T01 MTR_7g014670 76.882 186 42 1 286 471 78 262 3.24e-99 298
MsG0780036589.01.T01 MTR_7g014180 77.841 176 36 2 1 176 1 173 1.43e-87 266
MsG0780036589.01.T01 MTR_3g028210 36.364 473 272 12 9 468 8 464 1.37e-76 247
MsG0780036589.01.T01 MTR_7g014360 36.776 397 216 9 78 469 21 387 2.59e-76 244
MsG0780036589.01.T01 MTR_2g089765 33.333 504 275 16 3 468 2 482 4.23e-73 239
MsG0780036589.01.T01 MTR_2g089650 34.292 487 277 15 1 468 1 463 1.80e-68 226
MsG0780036589.01.T01 MTR_3g087640 34.454 476 272 14 17 470 17 474 2.47e-68 226
MsG0780036589.01.T01 MTR_2g089755 33.333 459 268 11 30 469 37 476 4.00e-65 218
MsG0780036589.01.T01 MTR_2g089735 35.135 444 251 16 43 469 39 462 5.39e-65 217
MsG0780036589.01.T01 MTR_2g089670 33.189 461 266 15 26 468 41 477 5.89e-65 217
MsG0780036589.01.T01 MTR_8g012750 32.762 467 270 16 26 466 22 470 2.41e-60 205
MsG0780036589.01.T01 MTR_7g015860 30.266 489 277 13 6 464 2 456 6.80e-59 201
MsG0780036589.01.T01 MTR_6g015310 32.915 398 197 10 53 446 2 333 4.30e-56 189
MsG0780036589.01.T01 MTR_2g089665 28.222 450 190 14 9 442 2 334 5.78e-39 144
MsG0780036589.01.T01 MTR_7g014310 30.178 338 174 8 118 453 31 308 2.66e-37 139
MsG0780036589.01.T01 MTR_3g435300 31.868 273 159 8 17 275 11 270 1.86e-33 127
MsG0780036589.01.T01 MTR_7g086000 24.082 490 312 16 8 470 3 459 1.91e-23 103
MsG0780036589.01.T01 MTR_8g075610 25.648 386 235 17 46 420 30 374 6.94e-23 100
MsG0780036589.01.T01 MTR_4g007540 25.236 424 265 19 9 420 3 386 5.39e-22 98.6
MsG0780036589.01.T01 MTR_5g084870 25.708 424 258 16 29 444 25 399 2.94e-21 96.3
MsG0780036589.01.T01 MTR_6g045553 27.122 483 285 19 8 457 13 461 1.27e-20 94.7
MsG0780036589.01.T01 MTR_3g070170 25.514 486 298 21 2 457 5 456 1.30e-20 94.7
MsG0780036589.01.T01 MTR_4g127650 24.524 473 306 16 15 468 16 456 1.59e-20 94.4
MsG0780036589.01.T01 MTR_4g094828 25.167 449 270 17 26 450 25 431 1.86e-19 90.9
MsG0780036589.01.T01 MTR_4g022290 25.541 462 248 19 28 453 28 429 5.76e-19 89.4
MsG0780036589.01.T01 MTR_4g094838 26.770 452 245 17 20 449 18 405 2.24e-18 87.8
MsG0780036589.01.T01 MTR_4g097090 23.469 490 315 19 1 466 1 454 2.60e-18 87.4
MsG0780036589.01.T01 MTR_8g096530 23.144 458 312 13 5 460 3 422 2.90e-18 87.4
MsG0780036589.01.T01 MTR_8g079950 24.533 428 264 16 29 444 25 405 3.56e-18 87.0
MsG0780036589.01.T01 MTR_3g088420 23.963 434 278 12 28 450 22 414 3.68e-18 87.0
MsG0780036589.01.T01 MTR_5g084850 25.658 456 272 20 29 471 25 426 4.42e-18 86.7
MsG0780036589.01.T01 MTR_2g105330 23.739 476 298 22 9 466 3 431 5.29e-18 86.7
MsG0780036589.01.T01 MTR_2g064495 22.996 474 304 19 9 466 3 431 6.06e-18 86.3
MsG0780036589.01.T01 MTR_2g015430 23.673 452 286 17 27 461 22 431 1.59e-17 85.1
MsG0780036589.01.T01 MTR_7g085990 27.726 321 182 16 38 341 30 317 2.09e-17 84.7
MsG0780036589.01.T01 MTR_4g022825 23.788 433 287 12 28 450 22 421 2.86e-17 84.3
MsG0780036589.01.T01 MTR_8g079970 23.005 426 273 15 29 444 25 405 3.08e-17 84.3
MsG0780036589.01.T01 MTR_8g079980 25.117 426 263 13 29 444 25 404 3.95e-17 84.0
MsG0780036589.01.T01 MTR_7g085930 24.138 493 304 21 9 468 6 461 4.30e-17 84.0
MsG0780036589.01.T01 MTR_3g086020 24.828 435 249 19 30 452 28 396 5.17e-17 83.2
MsG0780036589.01.T01 MTR_3g049150 22.951 488 306 19 9 468 2 447 6.31e-17 83.2
MsG0780036589.01.T01 MTR_4g094835 27.313 454 243 22 28 450 30 427 1.99e-16 81.6
MsG0780036589.01.T01 MTR_3g098980 25.369 406 256 16 69 465 66 433 8.05e-16 79.7
MsG0780036589.01.T01 MTR_3g026310 22.917 432 300 12 28 450 22 429 9.98e-16 79.7
MsG0780036589.01.T01 MTR_3g101900 25.835 449 268 23 30 457 30 434 1.35e-15 79.3
MsG0780036589.01.T01 MTR_3g102010 24.503 453 282 20 30 462 30 442 2.39e-15 78.6
MsG0780036589.01.T01 MTR_3g102020 25.056 443 287 20 33 462 32 442 2.44e-15 78.6
MsG0780036589.01.T01 MTR_7g084910 22.388 469 295 17 9 467 17 426 8.42e-15 76.6
MsG0780036589.01.T01 MTR_7g027175 22.983 409 261 13 69 464 68 435 1.12e-14 76.3
MsG0780036589.01.T01 MTR_3g101960 23.632 402 262 16 30 419 29 397 2.58e-14 75.1
MsG0780036589.01.T01 MTR_7g014205 35.714 112 60 2 319 430 15 114 3.34e-14 69.3
MsG0780036589.01.T01 MTR_7g084940 22.642 424 271 14 9 421 16 393 7.92e-14 73.6
MsG0780036589.01.T01 MTR_1g053315 23.057 386 252 14 46 420 58 409 1.29e-13 73.2
MsG0780036589.01.T01 MTR_2g007880 23.756 442 254 20 52 460 48 439 1.60e-13 72.8
MsG0780036589.01.T01 MTR_0190s0020 23.956 455 272 19 20 450 19 423 1.65e-13 72.8
MsG0780036589.01.T01 MTR_7g014340 50.704 71 29 2 10 77 3 70 6.91e-13 65.1
MsG0780036589.01.T01 MTR_7g014220 57.407 54 20 1 26 79 14 64 7.55e-13 64.3
MsG0780036589.01.T01 MTR_4g022720 23.929 397 258 14 66 450 52 416 1.44e-12 69.7
MsG0780036589.01.T01 MTR_4g094832 28.793 323 165 17 148 450 134 411 2.38e-12 68.9
MsG0780036589.01.T01 MTR_4g094842 24.221 417 252 17 66 458 59 435 3.08e-12 68.9
MsG0780036589.01.T01 MTR_3g465910 24.107 336 221 8 8 338 9 315 1.75e-11 66.6
MsG0780036589.01.T01 MTR_8g467590 24.263 441 269 20 8 433 4 394 1.79e-11 66.2
MsG0780036589.01.T01 MTR_3g465980 23.575 386 252 12 9 385 10 361 3.47e-11 65.5
MsG0780036589.01.T01 MTR_3g435290 49.254 67 32 1 402 468 53 117 4.78e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036589.01.T01 AT3G29670 39.780 455 244 11 20 468 19 449 1.91e-96 298
MsG0780036589.01.T01 AT5G39050 40.084 474 258 14 7 468 8 467 2.39e-95 296
MsG0780036589.01.T01 AT3G29590 38.365 477 251 11 4 468 3 448 4.90e-94 292
MsG0780036589.01.T01 AT5G39080 38.913 460 254 14 22 470 20 463 4.65e-92 287
MsG0780036589.01.T01 AT3G29635 37.111 450 256 10 28 470 27 456 1.52e-90 283
MsG0780036589.01.T01 AT5G39090 36.923 455 254 14 21 468 19 447 8.34e-88 276
MsG0780036589.01.T01 AT5G61160 34.685 444 263 10 28 464 23 446 1.17e-79 255
MsG0780036589.01.T01 AT3G29680 34.848 462 247 12 28 470 23 449 2.52e-78 251
MsG0780036589.01.T01 AT1G03940 31.263 467 283 12 19 468 19 464 4.39e-66 220
MsG0780036589.01.T01 AT1G03495 32.239 335 195 10 19 340 19 334 1.55e-42 154
MsG0780036589.01.T01 AT5G23940 26.077 441 288 16 30 458 25 439 1.42e-28 118
MsG0780036589.01.T01 AT5G48930 25.210 476 292 20 9 466 3 432 2.60e-23 102
MsG0780036589.01.T01 AT3G29720 32.850 207 114 8 107 304 26 216 6.84e-22 94.4
MsG0780036589.01.T01 AT5G67150 27.233 459 274 17 28 472 27 439 7.48e-21 95.1
MsG0780036589.01.T01 AT1G28680 24.033 362 234 11 69 423 62 389 2.27e-19 90.9
MsG0780036589.01.T01 AT2G19070 23.095 433 277 16 9 419 4 402 3.13e-19 90.5
MsG0780036589.01.T01 AT5G41040 25.990 404 261 17 69 466 69 440 5.45e-19 89.7
MsG0780036589.01.T01 AT5G41040 25.990 404 261 17 69 466 85 456 7.62e-19 89.4
MsG0780036589.01.T01 AT3G29690 30.769 169 77 5 317 468 33 178 3.15e-18 82.8
MsG0780036589.01.T01 AT5G57840 24.380 484 300 21 9 471 3 441 3.29e-18 87.4
MsG0780036589.01.T01 AT1G28680 25.623 281 173 8 69 343 62 312 3.31e-17 84.0
MsG0780036589.01.T01 AT2G39980 23.109 476 308 17 16 457 15 466 1.11e-15 79.7
MsG0780036589.01.T01 AT5G07850 24.336 452 284 18 16 445 9 424 5.60e-15 77.4
MsG0780036589.01.T01 AT5G67160 26.683 416 247 14 17 420 13 382 2.27e-14 75.5
MsG0780036589.01.T01 AT3G62160 23.077 416 259 17 18 423 11 375 5.77e-13 70.9
MsG0780036589.01.T01 AT5G07860 24.714 437 276 18 33 455 34 431 2.30e-12 69.3
MsG0780036589.01.T01 AT3G48720 22.794 408 263 14 69 464 61 428 3.68e-12 68.6
MsG0780036589.01.T01 AT2G23510 21.921 406 266 19 69 457 69 440 6.69e-12 67.8
MsG0780036589.01.T01 AT2G40230 22.477 436 286 16 6 430 2 396 7.18e-12 67.8
MsG0780036589.01.T01 AT5G42830 25.628 398 233 20 64 443 59 411 7.49e-12 67.8
MsG0780036589.01.T01 AT5G07870 24.826 431 283 19 34 450 35 438 2.64e-11 65.9

Find 92 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAAGTTCACGATCACTTTA+AGG 0.164541 7:+10160080 MsG0780036589.01.T01:CDS
CCGATGCTAAAACCACTATT+TGG 0.173013 7:-10160522 None:intergenic
GAAGGGTGTGATTGTGAATT+TGG 0.182607 7:-10160207 None:intergenic
TCACTTTCTTCGACATATTT+TGG 0.186190 7:+10160142 MsG0780036589.01.T01:CDS
TCCATTACGTTATTTCCTTT+TGG 0.200562 7:-10160699 None:intergenic
CGAACAGAGTCTTCGAGTTT+TGG 0.241278 7:-10160789 None:intergenic
CTTTAGCTGGTAACATTGTT+TGG 0.264357 7:+10160298 MsG0780036589.01.T01:CDS
CAATGAAACTCCACTGTTCT+TGG 0.281942 7:-10160358 None:intergenic
AGTTCAAACCTTCATTCAAT+AGG 0.301095 7:+10160661 MsG0780036589.01.T01:CDS
CAGTTTCCAAGATAGTTATT+TGG 0.312431 7:-10161047 None:intergenic
TAAGCTCAAACATGAAGATT+TGG 0.316500 7:+10160821 MsG0780036589.01.T01:CDS
ACATTATTCCCAAGTGAAAA+AGG 0.317573 7:+10160732 MsG0780036589.01.T01:CDS
ACTATCTTGGAAACTGTGTT+TGG 0.321806 7:+10161054 MsG0780036589.01.T01:CDS
TATTTGGGAAAAGGGTGATT+TGG 0.325357 7:-10160506 None:intergenic
AAGTGAAGGATTTGAAATAA+TGG 0.333426 7:+10161232 MsG0780036589.01.T01:CDS
CAACCATGTTCGTCAATGCT+TGG 0.353190 7:+10160583 MsG0780036589.01.T01:CDS
GTGCTAAAGATATCCATTAC+AGG 0.355444 7:-10161416 None:intergenic
CCAAGATAGTTATTTGGTAT+TGG 0.355456 7:-10161041 None:intergenic
GGGAGAGGAGGGATAGAAGT+TGG 0.357090 7:+10161377 MsG0780036589.01.T01:CDS
GGTGTTTATGAAATTGATTT+TGG 0.360240 7:+10161278 MsG0780036589.01.T01:CDS
AACCATGTTCGTCAATGCTT+GGG 0.360973 7:+10160584 MsG0780036589.01.T01:CDS
TTTAGCACTTTGTTTCTTGA+AGG 0.369823 7:+10161431 MsG0780036589.01.T01:CDS
ACTCATCATGCTGTTCTTGA+TGG 0.374958 7:+10160552 MsG0780036589.01.T01:CDS
CGATGCTAAAACCACTATTT+GGG 0.375508 7:-10160521 None:intergenic
TGTTCTTAATAAACCTGTAA+TGG 0.375842 7:+10161403 MsG0780036589.01.T01:CDS
ATGGTTGAACTACTCATTAA+TGG 0.379060 7:-10161459 None:intergenic
AACAAAGATGATAAATGAAA+AGG 0.386871 7:+10161157 MsG0780036589.01.T01:CDS
GTTCAAACCTTCATTCAATA+GGG 0.388452 7:+10160662 MsG0780036589.01.T01:CDS
AGTGAAGGATTTGAAATAAT+GGG 0.394576 7:+10161233 MsG0780036589.01.T01:CDS
CCAATACCAAATAACTATCT+TGG 0.397200 7:+10161041 MsG0780036589.01.T01:CDS
TTTAATGTTGCTGTTGTTGT+TGG 0.400453 7:-10160061 None:intergenic
TAGAAGAAAACGCGTTCTAC+TGG 0.401491 7:-10160177 None:intergenic
TAAAACCACTATTTGGGAAA+AGG 0.407089 7:-10160515 None:intergenic
AACGAGACAAAGAAGCTTCA+TGG 0.411299 7:-10160431 None:intergenic
GAGAGTGATGATTTGAGATT+CGG 0.414444 7:-10160252 None:intergenic
AATGAAACTCCACTGTTCTT+GGG 0.418636 7:-10160357 None:intergenic
AAGGGTGTGATTGTGAATTT+GGG 0.425297 7:-10160206 None:intergenic
TAGAGGTGTAACAATTGGTT+TGG 0.433565 7:+10161340 MsG0780036589.01.T01:CDS
ATTGTTTGAAAGAAGAAAGA+AGG 0.435032 7:-10160225 None:intergenic
ACAAAGATGATAAATGAAAA+GGG 0.439203 7:+10161158 MsG0780036589.01.T01:CDS
CTATCTTGGAAACTGTGTTT+GGG 0.444763 7:+10161055 MsG0780036589.01.T01:CDS
ATAGATAGAGGTGTAACAAT+TGG 0.445177 7:+10161335 MsG0780036589.01.T01:CDS
GAGATAGTGTCGATAGATAG+AGG 0.453075 7:+10161323 MsG0780036589.01.T01:CDS
TGTGTTGCAAAAGCGATTCA+TGG 0.455086 7:+10160951 MsG0780036589.01.T01:CDS
GGTTTGGCAGAGAGCAAAGA+TGG 0.455777 7:+10161356 MsG0780036589.01.T01:CDS
ACAAATGATGATAGAGTTTG+TGG 0.455784 7:-10160903 None:intergenic
ATGATTTCCCTATTGAATGA+AGG 0.463603 7:-10160669 None:intergenic
CTTGGGATCAAATTGAATGA+TGG 0.465980 7:-10160340 None:intergenic
AAAACCACTATTTGGGAAAA+GGG 0.470209 7:-10160514 None:intergenic
GGAGAGGAGGGATAGAAGTT+GGG 0.470973 7:+10161378 MsG0780036589.01.T01:CDS
CTCATTTCTTTATCAAGTGA+AGG 0.475428 7:+10161218 MsG0780036589.01.T01:CDS
TTGGGATCAAATTGAATGAT+GGG 0.477479 7:-10160339 None:intergenic
TGGTTGGGGAAGGCCGGAAA+AGG 0.479363 7:+10161298 MsG0780036589.01.T01:CDS
CAAACAATGTTACCAGCTAA+AGG 0.481339 7:-10160297 None:intergenic
AGATAGTTATTTGGTATTGG+TGG 0.484142 7:-10161038 None:intergenic
GTGTTGCAAAAGCGATTCAT+GGG 0.487160 7:+10160952 MsG0780036589.01.T01:CDS
AGCAAAGAGTGTTATCTACA+TGG 0.487585 7:+10160853 MsG0780036589.01.T01:CDS
GTGGCGGGGTCTCATAGATT+TGG 0.491756 7:+10161257 MsG0780036589.01.T01:CDS
GAAGAAAGTGAGAGGGATTG+AGG 0.492974 7:-10160130 None:intergenic
TTTGAAATAATGGGAGTGGC+GGG 0.497904 7:+10161242 MsG0780036589.01.T01:CDS
GAGAATCTGATGATTCTAAG+TGG 0.501577 7:-10160464 None:intergenic
AAACAATGTTACCAGCTAAA+GGG 0.504045 7:-10160296 None:intergenic
CAGCTAAAGGGAGAAAATGT+TGG 0.510508 7:-10160284 None:intergenic
ACGAGACAAAGAAGCTTCAT+GGG 0.511639 7:-10160430 None:intergenic
GAAATCATCAAAGACCCAAA+AGG 0.530655 7:+10160684 MsG0780036589.01.T01:CDS
GAGAGCAAAGATGGGAGAGG+AGG 0.548569 7:+10161365 MsG0780036589.01.T01:CDS
CCCAAAAGGAAATAACGTAA+TGG 0.551373 7:+10160698 MsG0780036589.01.T01:CDS
TTGTTTGAAAGAAGAAAGAA+GGG 0.551836 7:-10160224 None:intergenic
TTGGGGAAGGCCGGAAAAGG+TGG 0.556102 7:+10161301 MsG0780036589.01.T01:CDS
AGAATCTGATGATTCTAAGT+GGG 0.558214 7:-10160463 None:intergenic
AGAGCAAAGATGGGAGAGGA+GGG 0.573224 7:+10161366 MsG0780036589.01.T01:CDS
TTTCGTTGATACACAGCCGT+TGG 0.584829 7:+10161082 MsG0780036589.01.T01:CDS
CTAAAGGGAGAAAATGTTGG+AGG 0.587490 7:-10160281 None:intergenic
AGGATTTGAAATAATGGGAG+TGG 0.589904 7:+10161238 MsG0780036589.01.T01:CDS
GCAAAGAGTGTTATCTACAT+GGG 0.593050 7:+10160854 MsG0780036589.01.T01:CDS
GCAGAGAGCAAAGATGGGAG+AGG 0.598380 7:+10161362 MsG0780036589.01.T01:CDS
GTTTGGCAGAGAGCAAAGAT+GGG 0.598479 7:+10161357 MsG0780036589.01.T01:CDS
GAAAGTGAGAGGGATTGAGG+TGG 0.600737 7:-10160127 None:intergenic
GTGTGATTGTGAATTTGGGA+GGG 0.604440 7:-10160202 None:intergenic
TTGGGAATAATGTGGATACA+AGG 0.607131 7:-10160722 None:intergenic
AGCCCAAGCATTGACGAACA+TGG 0.607159 7:-10160586 None:intergenic
ATTTGAAATAATGGGAGTGG+CGG 0.616341 7:+10161241 MsG0780036589.01.T01:CDS
GGTGTGATTGTGAATTTGGG+AGG 0.618307 7:-10160203 None:intergenic
TCAGCGTAGATTGCAGAGCA+AGG 0.630412 7:+10161009 MsG0780036589.01.T01:CDS
AATATGTCGAAGAAAGTGAG+AGG 0.638159 7:-10160138 None:intergenic
CAATTTGATCCCAAGAACAG+TGG 0.638657 7:+10160348 MsG0780036589.01.T01:CDS
GAATCTGATGATTCTAAGTG+GGG 0.642142 7:-10160462 None:intergenic
TTGAAATAATGGGAGTGGCG+GGG 0.646292 7:+10161243 MsG0780036589.01.T01:CDS
TAAAGGGAGAAAATGTTGGA+GGG 0.659949 7:-10160280 None:intergenic
TGTTGCAAAAGCGATTCATG+GGG 0.661868 7:+10160953 MsG0780036589.01.T01:CDS
ATATGTCGAAGAAAGTGAGA+GGG 0.668848 7:-10160137 None:intergenic
CGAGACAAAGAAGCTTCATG+GGG 0.713707 7:-10160429 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAAGATGATAAATGAAA+AGG + Chr7:10161157-10161176 MsG0780036589.01.T01:CDS 20.0%
!! ACAAAGATGATAAATGAAAA+GGG + Chr7:10161158-10161177 MsG0780036589.01.T01:CDS 20.0%
!!! TCTTCTTTTATAAAATCCAA+CGG - Chr7:10161101-10161120 None:intergenic 20.0%
!!! TTATGAAATTGATTTTGGTT+GGG + Chr7:10161283-10161302 MsG0780036589.01.T01:CDS 20.0%
!!! TTGGATTTTATAAAAGAAGA+TGG + Chr7:10161101-10161120 MsG0780036589.01.T01:CDS 20.0%
!!! TTTATGAAATTGATTTTGGT+TGG + Chr7:10161282-10161301 MsG0780036589.01.T01:CDS 20.0%
! ATTGTTTGAAAGAAGAAAGA+AGG - Chr7:10160228-10160247 None:intergenic 25.0%
! TGTTCTTAATAAACCTGTAA+TGG + Chr7:10161403-10161422 MsG0780036589.01.T01:CDS 25.0%
! TTGTTTGAAAGAAGAAAGAA+GGG - Chr7:10160227-10160246 None:intergenic 25.0%
!! AAGTGAAGGATTTGAAATAA+TGG + Chr7:10161232-10161251 MsG0780036589.01.T01:CDS 25.0%
!! AGTGAAGGATTTGAAATAAT+GGG + Chr7:10161233-10161252 MsG0780036589.01.T01:CDS 25.0%
!!! GGTGTTTATGAAATTGATTT+TGG + Chr7:10161278-10161297 MsG0780036589.01.T01:CDS 25.0%
!!! TATCATTTCCTTTTTCACTT+GGG - Chr7:10160743-10160762 None:intergenic 25.0%
!!! TATGAAATTGATTTTGGTTG+GGG + Chr7:10161284-10161303 MsG0780036589.01.T01:CDS 25.0%
AAAACCACTATTTGGGAAAA+GGG - Chr7:10160517-10160536 None:intergenic 30.0%
AAACAATGTTACCAGCTAAA+GGG - Chr7:10160299-10160318 None:intergenic 30.0%
ACAAATGATGATAGAGTTTG+TGG - Chr7:10160906-10160925 None:intergenic 30.0%
ACATTATTCCCAAGTGAAAA+AGG + Chr7:10160732-10160751 MsG0780036589.01.T01:CDS 30.0%
AGAATCTGATGATTCTAAGT+GGG - Chr7:10160466-10160485 None:intergenic 30.0%
AGTTCAAACCTTCATTCAAT+AGG + Chr7:10160661-10160680 MsG0780036589.01.T01:CDS 30.0%
ATGATTTCCCTATTGAATGA+AGG - Chr7:10160672-10160691 None:intergenic 30.0%
CAGTTTCCAAGATAGTTATT+TGG - Chr7:10161050-10161069 None:intergenic 30.0%
CCAAGATAGTTATTTGGTAT+TGG - Chr7:10161044-10161063 None:intergenic 30.0%
CCAATACCAAATAACTATCT+TGG + Chr7:10161041-10161060 MsG0780036589.01.T01:CDS 30.0%
CTATGCAAAAAAGCTATTGA+AGG + Chr7:10160612-10160631 MsG0780036589.01.T01:CDS 30.0%
CTCATTTCTTTATCAAGTGA+AGG + Chr7:10161218-10161237 MsG0780036589.01.T01:CDS 30.0%
GTTCAAACCTTCATTCAATA+GGG + Chr7:10160662-10160681 MsG0780036589.01.T01:CDS 30.0%
TAAAACCACTATTTGGGAAA+AGG - Chr7:10160518-10160537 None:intergenic 30.0%
TAAAGTTCACGATCACTTTA+AGG + Chr7:10160080-10160099 MsG0780036589.01.T01:CDS 30.0%
TAAGCTCAAACATGAAGATT+TGG + Chr7:10160821-10160840 MsG0780036589.01.T01:CDS 30.0%
TTGGGATCAAATTGAATGAT+GGG - Chr7:10160342-10160361 None:intergenic 30.0%
! AATGAAAAGGGTTTTCTTGA+AGG + Chr7:10161170-10161189 MsG0780036589.01.T01:CDS 30.0%
! AGATAGTTATTTGGTATTGG+TGG - Chr7:10161041-10161060 None:intergenic 30.0%
! ATAGATAGAGGTGTAACAAT+TGG + Chr7:10161335-10161354 MsG0780036589.01.T01:CDS 30.0%
! ATGAAAAGGGTTTTCTTGAA+GGG + Chr7:10161171-10161190 MsG0780036589.01.T01:CDS 30.0%
! TCACTTTCTTCGACATATTT+TGG + Chr7:10160142-10160161 MsG0780036589.01.T01:CDS 30.0%
! TTTAATGTTGCTGTTGTTGT+TGG - Chr7:10160064-10160083 None:intergenic 30.0%
! TTTAGCACTTTGTTTCTTGA+AGG + Chr7:10161431-10161450 MsG0780036589.01.T01:CDS 30.0%
! TTTTTCACTTGGGAATAATG+TGG - Chr7:10160733-10160752 None:intergenic 30.0%
!! CCATTACGTTATTTCCTTTT+GGG - Chr7:10160701-10160720 None:intergenic 30.0%
!! CTATCATTTCCTTTTTCACT+TGG - Chr7:10160744-10160763 None:intergenic 30.0%
!! TCCATTACGTTATTTCCTTT+TGG - Chr7:10160702-10160721 None:intergenic 30.0%
AATATGTCGAAGAAAGTGAG+AGG - Chr7:10160141-10160160 None:intergenic 35.0%
AATGAAACTCCACTGTTCTT+GGG - Chr7:10160360-10160379 None:intergenic 35.0%
ACTATCTTGGAAACTGTGTT+TGG + Chr7:10161054-10161073 MsG0780036589.01.T01:CDS 35.0%
ATATGTCGAAGAAAGTGAGA+GGG - Chr7:10160140-10160159 None:intergenic 35.0%
CAAACAATGTTACCAGCTAA+AGG - Chr7:10160300-10160319 None:intergenic 35.0%
CCCAAAAGGAAATAACGTAA+TGG + Chr7:10160698-10160717 MsG0780036589.01.T01:CDS 35.0%
CGATGCTAAAACCACTATTT+GGG - Chr7:10160524-10160543 None:intergenic 35.0%
CTATCTTGGAAACTGTGTTT+GGG + Chr7:10161055-10161074 MsG0780036589.01.T01:CDS 35.0%
CTTGGGATCAAATTGAATGA+TGG - Chr7:10160343-10160362 None:intergenic 35.0%
CTTTAGCTGGTAACATTGTT+TGG + Chr7:10160298-10160317 MsG0780036589.01.T01:CDS 35.0%
GAAATCATCAAAGACCCAAA+AGG + Chr7:10160684-10160703 MsG0780036589.01.T01:CDS 35.0%
GAATCTGATGATTCTAAGTG+GGG - Chr7:10160465-10160484 None:intergenic 35.0%
GAGAATCTGATGATTCTAAG+TGG - Chr7:10160467-10160486 None:intergenic 35.0%
GTGCTAAAGATATCCATTAC+AGG - Chr7:10161419-10161438 None:intergenic 35.0%
TAAAGGGAGAAAATGTTGGA+GGG - Chr7:10160283-10160302 None:intergenic 35.0%
TATTTGGGAAAAGGGTGATT+TGG - Chr7:10160509-10160528 None:intergenic 35.0%
TTGGGAATAATGTGGATACA+AGG - Chr7:10160725-10160744 None:intergenic 35.0%
! AAGGGTGTGATTGTGAATTT+GGG - Chr7:10160209-10160228 None:intergenic 35.0%
! AGGATTTGAAATAATGGGAG+TGG + Chr7:10161238-10161257 MsG0780036589.01.T01:CDS 35.0%
! ATTTGAAATAATGGGAGTGG+CGG + Chr7:10161241-10161260 MsG0780036589.01.T01:CDS 35.0%
! GAGAGTGATGATTTGAGATT+CGG - Chr7:10160255-10160274 None:intergenic 35.0%
! TAGAGGTGTAACAATTGGTT+TGG + Chr7:10161340-10161359 MsG0780036589.01.T01:CDS 35.0%
! TGAAAAGGGTTTTCTTGAAG+GGG + Chr7:10161172-10161191 MsG0780036589.01.T01:CDS 35.0%
!! AGCAAAGAGTGTTATCTACA+TGG + Chr7:10160853-10160872 MsG0780036589.01.T01:CDS 35.0%
!! GCAAAGAGTGTTATCTACAT+GGG + Chr7:10160854-10160873 MsG0780036589.01.T01:CDS 35.0%
!!! AAATTGATTTTGGTTGGGGA+AGG + Chr7:10161288-10161307 MsG0780036589.01.T01:CDS 35.0%
!!! ATGGGTTTTGAAGAATCAGA+AGG - Chr7:10160324-10160343 None:intergenic 35.0%
!!! CCAAATAGTGGTTTTAGCAT+CGG + Chr7:10160522-10160541 MsG0780036589.01.T01:CDS 35.0%
!!! GTGGTTTTTGTTGATGATAG+AGG - Chr7:10160111-10160130 None:intergenic 35.0%
!!! TCTTCGACATATTTTGGCTA+AGG + Chr7:10160148-10160167 MsG0780036589.01.T01:CDS 35.0%
!!! TCTTCGAGTTTTGGTTCAAA+CGG - Chr7:10160783-10160802 None:intergenic 35.0%
AACCATGTTCGTCAATGCTT+GGG + Chr7:10160584-10160603 MsG0780036589.01.T01:CDS 40.0%
AACGAGACAAAGAAGCTTCA+TGG - Chr7:10160434-10160453 None:intergenic 40.0%
ACGAGACAAAGAAGCTTCAT+GGG - Chr7:10160433-10160452 None:intergenic 40.0%
ACTCATCATGCTGTTCTTGA+TGG + Chr7:10160552-10160571 MsG0780036589.01.T01:CDS 40.0%
CAATGAAACTCCACTGTTCT+TGG - Chr7:10160361-10160380 None:intergenic 40.0%
CAATTTGATCCCAAGAACAG+TGG + Chr7:10160348-10160367 MsG0780036589.01.T01:CDS 40.0%
CAGCTAAAGGGAGAAAATGT+TGG - Chr7:10160287-10160306 None:intergenic 40.0%
CCGATGCTAAAACCACTATT+TGG - Chr7:10160525-10160544 None:intergenic 40.0%
CTAAAGGGAGAAAATGTTGG+AGG - Chr7:10160284-10160303 None:intergenic 40.0%
GTGTGATTGTGAATTTGGGA+GGG - Chr7:10160205-10160224 None:intergenic 40.0%
GTGTTGCAAAAGCGATTCAT+GGG + Chr7:10160952-10160971 MsG0780036589.01.T01:CDS 40.0%
TAGAAGAAAACGCGTTCTAC+TGG - Chr7:10160180-10160199 None:intergenic 40.0%
TGTGTTGCAAAAGCGATTCA+TGG + Chr7:10160951-10160970 MsG0780036589.01.T01:CDS 40.0%
TGTTGCAAAAGCGATTCATG+GGG + Chr7:10160953-10160972 MsG0780036589.01.T01:CDS 40.0%
! ATCACCCTTTTCCCAAATAG+TGG + Chr7:10160510-10160529 MsG0780036589.01.T01:CDS 40.0%
! CAACATTTTCTCCCTTTAGC+TGG + Chr7:10160285-10160304 MsG0780036589.01.T01:CDS 40.0%
! GAAGGGTGTGATTGTGAATT+TGG - Chr7:10160210-10160229 None:intergenic 40.0%
! TTTGAAATAATGGGAGTGGC+GGG + Chr7:10161242-10161261 MsG0780036589.01.T01:CDS 40.0%
!! GAGATAGTGTCGATAGATAG+AGG + Chr7:10161323-10161342 MsG0780036589.01.T01:CDS 40.0%
!!! CTTCGAGTTTTGGTTCAAAC+GGG - Chr7:10160782-10160801 None:intergenic 40.0%
CAACCATGTTCGTCAATGCT+TGG + Chr7:10160583-10160602 MsG0780036589.01.T01:CDS 45.0%
CGAGACAAAGAAGCTTCATG+GGG - Chr7:10160432-10160451 None:intergenic 45.0%
GAAGAAAGTGAGAGGGATTG+AGG - Chr7:10160133-10160152 None:intergenic 45.0%
GGTGTGATTGTGAATTTGGG+AGG - Chr7:10160206-10160225 None:intergenic 45.0%
GTTTGGCAGAGAGCAAAGAT+GGG + Chr7:10161357-10161376 MsG0780036589.01.T01:CDS 45.0%
TTTCGTTGATACACAGCCGT+TGG + Chr7:10161082-10161101 MsG0780036589.01.T01:CDS 45.0%
! GACACTATCTCCACCTTTTC+CGG - Chr7:10161314-10161333 None:intergenic 45.0%
! TTGAAATAATGGGAGTGGCG+GGG + Chr7:10161243-10161262 MsG0780036589.01.T01:CDS 45.0%
!! CGAACAGAGTCTTCGAGTTT+TGG - Chr7:10160792-10160811 None:intergenic 45.0%
AGAGCAAAGATGGGAGAGGA+GGG + Chr7:10161366-10161385 MsG0780036589.01.T01:CDS 50.0%
GAAAGTGAGAGGGATTGAGG+TGG - Chr7:10160130-10160149 None:intergenic 50.0%
GGAGAGGAGGGATAGAAGTT+GGG + Chr7:10161378-10161397 MsG0780036589.01.T01:CDS 50.0%
GGTTTGGCAGAGAGCAAAGA+TGG + Chr7:10161356-10161375 MsG0780036589.01.T01:CDS 50.0%
TCAGCGTAGATTGCAGAGCA+AGG + Chr7:10161009-10161028 MsG0780036589.01.T01:CDS 50.0%
!! AGCCCAAGCATTGACGAACA+TGG - Chr7:10160589-10160608 None:intergenic 50.0%
!!! TGATTTTGGTTGGGGAAGGC+CGG + Chr7:10161292-10161311 MsG0780036589.01.T01:CDS 50.0%
GAGAGCAAAGATGGGAGAGG+AGG + Chr7:10161365-10161384 MsG0780036589.01.T01:CDS 55.0%
GCAGAGAGCAAAGATGGGAG+AGG + Chr7:10161362-10161381 MsG0780036589.01.T01:CDS 55.0%
GGGAGAGGAGGGATAGAAGT+TGG + Chr7:10161377-10161396 MsG0780036589.01.T01:CDS 55.0%
! GTGGCGGGGTCTCATAGATT+TGG + Chr7:10161257-10161276 MsG0780036589.01.T01:CDS 55.0%
TGGTTGGGGAAGGCCGGAAA+AGG + Chr7:10161298-10161317 MsG0780036589.01.T01:CDS 60.0%
TTGGGGAAGGCCGGAAAAGG+TGG + Chr7:10161301-10161320 MsG0780036589.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 10160054 10161472 10160054 ID=MsG0780036589.01;Name=MsG0780036589.01
Chr7 mRNA 10160054 10161472 10160054 ID=MsG0780036589.01.T01;Parent=MsG0780036589.01;Name=MsG0780036589.01.T01;_AED=0.42;_eAED=0.42;_QI=0|-1|0|1|-1|1|1|0|472
Chr7 exon 10160054 10161472 10160054 ID=MsG0780036589.01.T01:exon:10403;Parent=MsG0780036589.01.T01
Chr7 CDS 10160054 10161472 10160054 ID=MsG0780036589.01.T01:cds;Parent=MsG0780036589.01.T01
Gene Sequence

>MsG0780036589.01.T01

ATGGCTTCCAACAACAACAGCAACATTAAAGTTCACGATCACTTTAAGGTTGTTCCTCTATCATCAACAAAAACCACCTCAATCCCTCTCACTTTCTTCGACATATTTTGGCTAAGGTTTCATCCAGTAGAACGCGTTTTCTTCTACACCCTCCCAAATTCACAATCACACCCTTCTTTCTTCTTTCAAACAATTGTTCCGAATCTCAAATCATCACTCTCTTTAGCCCTCCAACATTTTCTCCCTTTAGCTGGTAACATTGTTTGGCCTTCTGATTCTTCAAAACCCATCATTCAATTTGATCCCAAGAACAGTGGAGTTTCATTGATCATTGCAGAATGTGATTCAGATTTCAATCATGTTATTGAAAACTCACCCCATGAAGCTTCTTTGTCTCGTTCTTTTATACCCCACTTAGAATCATCAGATTCTCTTGCTTCTATTTTGTCACTCCAAATCACCCTTTTCCCAAATAGTGGTTTTAGCATCGGAATCAGCACTCATCATGCTGTTCTTGATGGAAAATCTTCAACCATGTTCGTCAATGCTTGGGCTTATCTATGCAAAAAAGCTATTGAAGGAGATGAATCACAAACTTTGTTGTCAGAGTTCAAACCTTCATTCAATAGGGAAATCATCAAAGACCCAAAAGGAAATAACGTAATGGACCTTGTATCCACATTATTCCCAAGTGAAAAAGGAAATGATAGAAGCTTAAAGATTTTCCCGTTTGAACCAAAACTCGAAGACTCTGTTCGTGCTACTTTTAAGCTCAAACATGAAGATTTGGATAAGATAAAGCAAAGAGTGTTATCTACATGGGAAATATTCGACACGAAAGAATCAAAGCCACAAACTCTATCATCATTTGTCATCACTTGTGCTTATTCGCTTGTTTGTGTTGCAAAAGCGATTCATGGGGCTCATAATGACAAAGAGAAGTTTTCTTTTGTGTTCAGCGTAGATTGCAGAGCAAGGTTAGAACCACCAATACCAAATAACTATCTTGGAAACTGTGTTTGGGCGTATTTCGTTGATACACAGCCGTTGGATTTTATAAAAGAAGATGGTGTTTTTTTAGTTGCTAAGAGTATTTATGAGAAAACAAAGATGATAAATGAAAAGGGTTTTCTTGAAGGGGCTATTAATGATATGTTTGAGAAACTCATTTCTTTATCAAGTGAAGGATTTGAAATAATGGGAGTGGCGGGGTCTCATAGATTTGGTGTTTATGAAATTGATTTTGGTTGGGGAAGGCCGGAAAAGGTGGAGATAGTGTCGATAGATAGAGGTGTAACAATTGGTTTGGCAGAGAGCAAAGATGGGAGAGGAGGGATAGAAGTTGGGCTTGTTCTTAATAAACCTGTAATGGATATCTTTAGCACTTTGTTTCTTGAAGGATTATCCATTAATGAGTAG
Protein sequence

>MsG0780036589.01.T01

MASNNNSNIKVHDHFKVVPLSSTKTTSIPLTFFDIFWLRFHPVERVFFYTLPNSQSHPSFFFQTIVPNLKSSLSLALQHFLPLAGNIVWPSDSSKPIIQFDPKNSGVSLIIAECDSDFNHVIENSPHEASLSRSFIPHLESSDSLASILSLQITLFPNSGFSIGISTHHAVLDGKSSTMFVNAWAYLCKKAIEGDESQTLLSEFKPSFNREIIKDPKGNNVMDLVSTLFPSEKGNDRSLKIFPFEPKLEDSVRATFKLKHEDLDKIKQRVLSTWEIFDTKESKPQTLSSFVITCAYSLVCVAKAIHGAHNDKEKFSFVFSVDCRARLEPPIPNNYLGNCVWAYFVDTQPLDFIKEDGVFLVAKSIYEKTKMINEKGFLEGAINDMFEKLISLSSEGFEIMGVAGSHRFGVYEIDFGWGRPEKVEIVSIDRGVTIGLAESKDGRGGIEVGLVLNKPVMDIFSTLFLEGLSINE*