Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036561.01.T01 | XP_039684187.1 | 79.132 | 484 | 97 | 2 | 1 | 484 | 1 | 480 | 0 | 795 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036561.01.T01 | Q940Z5 | 38.855 | 489 | 253 | 16 | 8 | 481 | 10 | 467 | 2.30E-93 | 294 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036561.01.T01 | A0A396H0H8 | 79.132 | 484 | 97 | 2 | 1 | 484 | 1 | 480 | 0.0 | 795 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036561.01.T01 | MTR_7g013850 | 77.320 | 485 | 107 | 3 | 1 | 484 | 1 | 483 | 0.0 | 758 |
| MsG0780036561.01.T01 | MTR_7g014200 | 57.290 | 487 | 183 | 12 | 1 | 481 | 1 | 468 | 0.0 | 533 |
| MsG0780036561.01.T01 | MTR_7g014160 | 56.289 | 485 | 193 | 11 | 5 | 484 | 6 | 476 | 0.0 | 531 |
| MsG0780036561.01.T01 | MTR_7g014610 | 57.377 | 488 | 190 | 10 | 1 | 482 | 1 | 476 | 0.0 | 520 |
| MsG0780036561.01.T01 | MTR_7g014620 | 50.855 | 468 | 190 | 8 | 19 | 484 | 6 | 435 | 4.95e-150 | 435 |
| MsG0780036561.01.T01 | MTR_6g015315 | 40.444 | 450 | 241 | 10 | 32 | 481 | 30 | 452 | 3.33e-108 | 329 |
| MsG0780036561.01.T01 | MTR_7g014630 | 58.511 | 282 | 106 | 7 | 8 | 285 | 9 | 283 | 3.58e-105 | 318 |
| MsG0780036561.01.T01 | MTR_6g015320 | 37.938 | 485 | 266 | 11 | 1 | 481 | 1 | 454 | 4.31e-104 | 318 |
| MsG0780036561.01.T01 | MTR_7g014330 | 40.166 | 483 | 252 | 15 | 9 | 482 | 3 | 457 | 3.16e-103 | 316 |
| MsG0780036561.01.T01 | MTR_6g015850 | 39.069 | 494 | 251 | 14 | 1 | 481 | 1 | 457 | 1.01e-102 | 315 |
| MsG0780036561.01.T01 | MTR_6g015815 | 39.916 | 476 | 231 | 12 | 20 | 481 | 26 | 460 | 1.20e-102 | 315 |
| MsG0780036561.01.T01 | MTR_6g015830 | 39.139 | 488 | 246 | 13 | 9 | 481 | 9 | 460 | 2.61e-102 | 314 |
| MsG0780036561.01.T01 | MTR_7g014230 | 39.130 | 483 | 259 | 13 | 6 | 480 | 2 | 457 | 2.03e-100 | 309 |
| MsG0780036561.01.T01 | MTR_7g014250 | 38.636 | 484 | 256 | 14 | 9 | 481 | 3 | 456 | 3.15e-100 | 308 |
| MsG0780036561.01.T01 | MTR_3g028210 | 35.391 | 486 | 273 | 15 | 8 | 481 | 8 | 464 | 1.48e-75 | 245 |
| MsG0780036561.01.T01 | MTR_7g014180 | 67.598 | 179 | 51 | 5 | 1 | 178 | 1 | 173 | 5.98e-72 | 226 |
| MsG0780036561.01.T01 | MTR_7g014360 | 34.146 | 410 | 220 | 10 | 78 | 482 | 23 | 387 | 9.46e-69 | 225 |
| MsG0780036561.01.T01 | MTR_2g089765 | 31.663 | 499 | 284 | 16 | 8 | 481 | 16 | 482 | 1.03e-66 | 223 |
| MsG0780036561.01.T01 | MTR_7g014670 | 55.263 | 190 | 83 | 2 | 293 | 481 | 71 | 259 | 1.16e-64 | 210 |
| MsG0780036561.01.T01 | MTR_2g089670 | 32.762 | 467 | 271 | 14 | 26 | 481 | 43 | 477 | 4.22e-62 | 210 |
| MsG0780036561.01.T01 | MTR_2g089735 | 32.009 | 453 | 266 | 14 | 41 | 481 | 39 | 461 | 2.77e-59 | 202 |
| MsG0780036561.01.T01 | MTR_2g089650 | 28.773 | 497 | 304 | 14 | 1 | 481 | 1 | 463 | 1.82e-58 | 200 |
| MsG0780036561.01.T01 | MTR_3g087640 | 30.285 | 492 | 295 | 14 | 9 | 481 | 10 | 472 | 6.16e-56 | 194 |
| MsG0780036561.01.T01 | MTR_6g015310 | 31.951 | 410 | 200 | 14 | 51 | 459 | 2 | 333 | 3.98e-55 | 187 |
| MsG0780036561.01.T01 | MTR_8g012750 | 29.268 | 492 | 304 | 17 | 8 | 479 | 3 | 470 | 1.59e-53 | 187 |
| MsG0780036561.01.T01 | MTR_2g089755 | 28.511 | 470 | 289 | 13 | 28 | 481 | 37 | 475 | 3.78e-53 | 186 |
| MsG0780036561.01.T01 | MTR_7g015860 | 28.953 | 487 | 280 | 16 | 5 | 467 | 2 | 446 | 1.27e-52 | 184 |
| MsG0780036561.01.T01 | MTR_7g014310 | 28.280 | 343 | 175 | 5 | 123 | 464 | 34 | 306 | 1.11e-39 | 145 |
| MsG0780036561.01.T01 | MTR_2g089665 | 25.702 | 463 | 203 | 19 | 8 | 458 | 2 | 335 | 3.96e-26 | 109 |
| MsG0780036561.01.T01 | MTR_3g435300 | 32.051 | 234 | 132 | 7 | 9 | 230 | 4 | 222 | 4.85e-25 | 104 |
| MsG0780036561.01.T01 | MTR_4g007540 | 23.673 | 490 | 296 | 19 | 8 | 479 | 3 | 432 | 6.37e-24 | 104 |
| MsG0780036561.01.T01 | MTR_5g081960 | 24.440 | 491 | 327 | 18 | 4 | 470 | 2 | 472 | 3.46e-21 | 96.7 |
| MsG0780036561.01.T01 | MTR_2g064495 | 23.878 | 490 | 294 | 22 | 8 | 479 | 3 | 431 | 1.45e-19 | 91.3 |
| MsG0780036561.01.T01 | MTR_8g075610 | 24.505 | 404 | 232 | 17 | 44 | 433 | 30 | 374 | 1.76e-19 | 90.9 |
| MsG0780036561.01.T01 | MTR_7g086000 | 24.434 | 442 | 263 | 15 | 67 | 481 | 60 | 457 | 4.66e-19 | 90.1 |
| MsG0780036561.01.T01 | MTR_2g105330 | 23.878 | 490 | 294 | 22 | 8 | 479 | 3 | 431 | 1.01e-18 | 88.6 |
| MsG0780036561.01.T01 | MTR_6g045553 | 24.078 | 461 | 264 | 18 | 8 | 433 | 14 | 423 | 2.82e-18 | 87.8 |
| MsG0780036561.01.T01 | MTR_3g026950 | 23.516 | 438 | 272 | 15 | 64 | 478 | 51 | 448 | 3.35e-17 | 84.3 |
| MsG0780036561.01.T01 | MTR_3g049150 | 23.092 | 498 | 307 | 20 | 8 | 481 | 2 | 447 | 4.26e-17 | 84.0 |
| MsG0780036561.01.T01 | MTR_7g014210 | 38.318 | 107 | 64 | 2 | 339 | 443 | 24 | 130 | 1.12e-16 | 77.8 |
| MsG0780036561.01.T01 | MTR_7g014205 | 36.937 | 111 | 58 | 2 | 334 | 443 | 15 | 114 | 1.20e-15 | 73.6 |
| MsG0780036561.01.T01 | MTR_4g094835 | 25.000 | 444 | 249 | 22 | 13 | 433 | 13 | 395 | 2.03e-15 | 78.6 |
| MsG0780036561.01.T01 | MTR_8g096530 | 22.693 | 401 | 249 | 13 | 39 | 433 | 37 | 382 | 6.74e-15 | 77.0 |
| MsG0780036561.01.T01 | MTR_7g085930 | 21.600 | 500 | 326 | 18 | 6 | 481 | 4 | 461 | 1.08e-14 | 76.6 |
| MsG0780036561.01.T01 | MTR_8g079970 | 24.124 | 485 | 276 | 20 | 11 | 474 | 8 | 421 | 1.75e-14 | 75.9 |
| MsG0780036561.01.T01 | MTR_7g085990 | 22.923 | 349 | 230 | 12 | 8 | 353 | 2 | 314 | 1.58e-13 | 72.8 |
| MsG0780036561.01.T01 | MTR_7g014340 | 42.308 | 104 | 48 | 4 | 9 | 107 | 3 | 99 | 1.91e-13 | 66.6 |
| MsG0780036561.01.T01 | MTR_4g097090 | 23.789 | 475 | 297 | 21 | 26 | 481 | 28 | 456 | 6.08e-13 | 71.2 |
| MsG0780036561.01.T01 | MTR_4g094842 | 23.485 | 396 | 230 | 17 | 62 | 436 | 57 | 400 | 7.73e-12 | 67.8 |
| MsG0780036561.01.T01 | MTR_7g014220 | 57.407 | 54 | 20 | 1 | 22 | 75 | 12 | 62 | 9.17e-12 | 61.2 |
| MsG0780036561.01.T01 | MTR_3g435290 | 46.269 | 67 | 34 | 1 | 415 | 481 | 53 | 117 | 6.15e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036561.01.T01 | AT5G39050 | 38.855 | 489 | 253 | 16 | 8 | 481 | 10 | 467 | 2.34e-94 | 294 |
| MsG0780036561.01.T01 | AT5G39080 | 37.681 | 483 | 271 | 12 | 1 | 478 | 1 | 458 | 4.29e-90 | 283 |
| MsG0780036561.01.T01 | AT3G29590 | 38.211 | 492 | 249 | 13 | 1 | 481 | 1 | 448 | 1.24e-89 | 281 |
| MsG0780036561.01.T01 | AT5G39090 | 36.743 | 479 | 263 | 12 | 6 | 481 | 6 | 447 | 2.89e-89 | 280 |
| MsG0780036561.01.T01 | AT3G29670 | 38.509 | 483 | 252 | 14 | 8 | 481 | 3 | 449 | 7.20e-89 | 279 |
| MsG0780036561.01.T01 | AT3G29635 | 37.732 | 485 | 258 | 13 | 8 | 481 | 3 | 454 | 3.77e-87 | 275 |
| MsG0780036561.01.T01 | AT5G61160 | 33.824 | 476 | 281 | 12 | 8 | 479 | 3 | 448 | 1.79e-73 | 239 |
| MsG0780036561.01.T01 | AT3G29680 | 34.884 | 473 | 274 | 11 | 6 | 477 | 4 | 443 | 1.37e-72 | 237 |
| MsG0780036561.01.T01 | AT1G03940 | 30.140 | 501 | 277 | 15 | 9 | 481 | 9 | 464 | 9.57e-65 | 217 |
| MsG0780036561.01.T01 | AT1G03495 | 30.518 | 367 | 210 | 14 | 10 | 364 | 10 | 343 | 1.19e-40 | 149 |
| MsG0780036561.01.T01 | AT5G48930 | 23.982 | 442 | 264 | 17 | 7 | 433 | 2 | 386 | 1.41e-21 | 97.4 |
| MsG0780036561.01.T01 | AT2G19070 | 22.824 | 425 | 265 | 16 | 26 | 432 | 23 | 402 | 2.41e-18 | 87.8 |
| MsG0780036561.01.T01 | AT3G50280 | 23.394 | 436 | 260 | 15 | 19 | 437 | 18 | 396 | 5.27e-18 | 86.7 |
| MsG0780036561.01.T01 | AT3G29690 | 33.775 | 151 | 94 | 2 | 332 | 481 | 33 | 178 | 6.69e-18 | 82.0 |
| MsG0780036561.01.T01 | AT3G29720 | 35.526 | 152 | 80 | 5 | 130 | 278 | 48 | 184 | 7.25e-17 | 80.1 |
| MsG0780036561.01.T01 | AT2G39980 | 22.981 | 483 | 342 | 13 | 1 | 470 | 1 | 466 | 2.66e-15 | 78.6 |
| MsG0780036561.01.T01 | AT3G50300 | 25.000 | 388 | 230 | 15 | 64 | 437 | 56 | 396 | 9.12e-14 | 73.6 |
| MsG0780036561.01.T01 | AT4G31910 | 21.311 | 366 | 250 | 9 | 44 | 407 | 46 | 375 | 1.02e-11 | 67.4 |
| MsG0780036561.01.T01 | AT5G38130 | 20.852 | 446 | 274 | 17 | 8 | 433 | 24 | 410 | 1.99e-11 | 66.6 |
Find 66 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGGATGTGATTGTGAATT+TGG | 0.152446 | 7:-9834816 | None:intergenic |
| TGTTTCCTTCGATAAAATTT+TGG | 0.171407 | 7:+9835016 | MsG0780036561.01.T01:CDS |
| TACTACTCCCCTTTCCAAAA+AGG | 0.234267 | 7:-9835294 | None:intergenic |
| AATTGAGAGGGAGAGATAAT+TGG | 0.254446 | 7:-9834734 | None:intergenic |
| GGAGTATATGAGATTGATTT+TGG | 0.263592 | 7:+9835932 | MsG0780036561.01.T01:CDS |
| TCAATTTCTTTGACTTGATT+TGG | 0.263742 | 7:+9834751 | MsG0780036561.01.T01:CDS |
| CTTTAGCTGGTAACATTGTT+TGG | 0.271388 | 7:+9834907 | MsG0780036561.01.T01:CDS |
| CGAACAGAATCCTTAACTTT+TGG | 0.279952 | 7:-9835428 | None:intergenic |
| GAGTGACGTGAGAAGCTTAA+AGG | 0.285493 | 7:+9835385 | MsG0780036561.01.T01:CDS |
| GAGAGTGAAGATCTGAGTTT+TGG | 0.296015 | 7:-9834861 | None:intergenic |
| GATAATTGGTTTGCAGAGTT+AGG | 0.302514 | 7:-9834720 | None:intergenic |
| TTTGAGAGTGTGTTCATAAA+TGG | 0.312099 | 7:+9835332 | MsG0780036561.01.T01:CDS |
| ATTGATAGAGGATTAACTAT+TGG | 0.313217 | 7:+9835989 | MsG0780036561.01.T01:CDS |
| TTGAAAGGTGGTGTTGAGTT+TGG | 0.313473 | 7:+9836031 | MsG0780036561.01.T01:CDS |
| GACATTGATGTCTAGATATA+TGG | 0.316089 | 7:+9835856 | MsG0780036561.01.T01:CDS |
| TCCAAATGGTACATTGTAAA+AGG | 0.320135 | 7:+9835506 | MsG0780036561.01.T01:CDS |
| CATCTTCATTTGGATTGAAC+TGG | 0.323194 | 7:-9834956 | None:intergenic |
| TGAAAGGTGGTGTTGAGTTT+GGG | 0.329161 | 7:+9836032 | MsG0780036561.01.T01:CDS |
| GTTGCAGGGTCAACAAGATT+TGG | 0.380714 | 7:+9835911 | MsG0780036561.01.T01:CDS |
| ATTGTTGCTAATAAAATATA+TGG | 0.387373 | 7:+9835791 | MsG0780036561.01.T01:CDS |
| AACAAAAGTTGACAATCTCT+TGG | 0.389956 | 7:-9835561 | None:intergenic |
| ATTTAGAGAAATTAAACAAC+AGG | 0.390348 | 7:+9835477 | MsG0780036561.01.T01:CDS |
| AACACACTCTCAAAATCATT+TGG | 0.390399 | 7:-9835323 | None:intergenic |
| CTTATTTGAACCAAAAGTTA+AGG | 0.392963 | 7:+9835418 | MsG0780036561.01.T01:CDS |
| CCAGTTCCTGAAAACTACTT+TGG | 0.404805 | 7:+9835701 | MsG0780036561.01.T01:CDS |
| AAGGAAACTCCATCTTCATT+TGG | 0.406411 | 7:-9834966 | None:intergenic |
| AAGGATGTGATTGTGAATTT+GGG | 0.407904 | 7:-9834815 | None:intergenic |
| GTTCATGGAATAGGAGTTGC+AGG | 0.409902 | 7:+9835896 | MsG0780036561.01.T01:CDS |
| ACACACCATGCTGTTCTTGA+TGG | 0.421878 | 7:+9835173 | MsG0780036561.01.T01:CDS |
| TAGAAGAAGATACGTTCAAC+TGG | 0.427345 | 7:-9834786 | None:intergenic |
| ATGGATAAGGGTGTTCTTGA+TGG | 0.428466 | 7:+9835827 | MsG0780036561.01.T01:CDS |
| ACAACAGGGTGTTGTCCAAA+TGG | 0.451303 | 7:+9835492 | MsG0780036561.01.T01:CDS |
| ATACTTGGCGAAGGAGTTCA+TGG | 0.455848 | 7:+9835881 | MsG0780036561.01.T01:CDS |
| GAGATTACTTCAATTGATAG+AGG | 0.456941 | 7:+9835977 | MsG0780036561.01.T01:CDS |
| ACAAAAGTTGACAATCTCTT+GGG | 0.469305 | 7:-9835560 | None:intergenic |
| TTTGGAAAGGGGAGTAGTAA+AGG | 0.470773 | 7:+9835298 | MsG0780036561.01.T01:CDS |
| ATCAAGTCAAAGAAATTGAG+AGG | 0.478183 | 7:-9834747 | None:intergenic |
| GAGAAACTTTGCATTGTTCA+CGG | 0.484129 | 7:-9834698 | None:intergenic |
| GGCGAAGGAGTTCATGGAAT+AGG | 0.498286 | 7:+9835887 | MsG0780036561.01.T01:CDS |
| TTTGGATTGAACTGGATGAC+TGG | 0.500975 | 7:-9834948 | None:intergenic |
| TCTTTGACTTGATTTGGCTA+AGG | 0.509886 | 7:+9834757 | MsG0780036561.01.T01:CDS |
| TTGAAAAGATTTACATACAA+AGG | 0.511835 | 7:-9835228 | None:intergenic |
| CCACCATGTTCATCAAAGCT+TGG | 0.513622 | 7:+9835204 | MsG0780036561.01.T01:CDS |
| GAAAGTAGAGATTTGAAAGG+TGG | 0.519737 | 7:+9836019 | MsG0780036561.01.T01:CDS |
| TCTAGATATATGGCTATACT+TGG | 0.521714 | 7:+9835866 | MsG0780036561.01.T01:CDS |
| CAGTTCAATCCAAATGAAGA+TGG | 0.521842 | 7:+9834957 | MsG0780036561.01.T01:CDS |
| CAAACAATGTTACCAGCTAA+AGG | 0.530448 | 7:-9834906 | None:intergenic |
| AGAGTGTGTTCATAAATGGT+TGG | 0.574509 | 7:+9835336 | MsG0780036561.01.T01:CDS |
| ACAGAAAGTAGAGATTTGAA+AGG | 0.576880 | 7:+9836016 | MsG0780036561.01.T01:CDS |
| TGTTCTTGATAAGCATGTGA+TGG | 0.582226 | 7:+9836057 | MsG0780036561.01.T01:CDS |
| CAATGTTACCAGCTAAAGGT+AGG | 0.587517 | 7:-9834902 | None:intergenic |
| ATCACATTGTGCTAAGAGCA+AGG | 0.592670 | 7:-9834985 | None:intergenic |
| AGTTAAGGATTCTGTTCGAG+TGG | 0.595736 | 7:+9835433 | MsG0780036561.01.T01:CDS |
| GAATCTGTTGATTCTAAGTG+AGG | 0.596592 | 7:-9835083 | None:intergenic |
| TATATGGCTATACTTGGCGA+AGG | 0.626793 | 7:+9835872 | MsG0780036561.01.T01:CDS |
| GGACCAAGCTTTGATGAACA+TGG | 0.630307 | 7:-9835207 | None:intergenic |
| CGAGACAAAGAAGCTTCTTG+TGG | 0.639859 | 7:-9835050 | None:intergenic |
| ATGGTGTGTGCTTATTCCAA+TGG | 0.644576 | 7:-9835159 | None:intergenic |
| TCAAGTCAAAGAAATTGAGA+GGG | 0.648902 | 7:-9834746 | None:intergenic |
| GATGTGATTGTGAATTTGGG+AGG | 0.652869 | 7:-9834812 | None:intergenic |
| ATGTGATTGTGAATTTGGGA+GGG | 0.663766 | 7:-9834811 | None:intergenic |
| AGAAGAAGATACGTTCAACT+GGG | 0.672104 | 7:-9834785 | None:intergenic |
| TTCATGGAATAGGAGTTGCA+GGG | 0.694382 | 7:+9835897 | MsG0780036561.01.T01:CDS |
| GTGGCATTCGAGCTCACACG+CGG | 0.697073 | 7:+9835452 | MsG0780036561.01.T01:CDS |
| CCAAGCTTTGATGAACATGG+TGG | 0.697760 | 7:-9835204 | None:intergenic |
| TTTAGAGAAATTAAACAACA+GGG | 0.703197 | 7:+9835478 | MsG0780036561.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGTTGCTAATAAAATATA+TGG | + | Chr7:9835791-9835810 | MsG0780036561.01.T01:CDS | 15.0% |
| !! | ATATGGTAAAACAAAAATGA+TGG | + | Chr7:9835808-9835827 | MsG0780036561.01.T01:CDS | 20.0% |
| !! | ATTTAGAGAAATTAAACAAC+AGG | + | Chr7:9835477-9835496 | MsG0780036561.01.T01:CDS | 20.0% |
| !! | TCTAAAAAAGGATCTAAATT+TGG | - | Chr7:9835272-9835291 | None:intergenic | 20.0% |
| !! | TTGAAAAGATTTACATACAA+AGG | - | Chr7:9835231-9835250 | None:intergenic | 20.0% |
| !! | TTTAGAGAAATTAAACAACA+GGG | + | Chr7:9835478-9835497 | MsG0780036561.01.T01:CDS | 20.0% |
| !!! | AAAACAAAAATGATGGATAA+GGG | + | Chr7:9835815-9835834 | MsG0780036561.01.T01:CDS | 20.0% |
| !!! | TAAAACAAAAATGATGGATA+AGG | + | Chr7:9835814-9835833 | MsG0780036561.01.T01:CDS | 20.0% |
| ! | ATTGATAGAGGATTAACTAT+TGG | + | Chr7:9835989-9836008 | MsG0780036561.01.T01:CDS | 25.0% |
| ! | CTTATTTGAACCAAAAGTTA+AGG | + | Chr7:9835418-9835437 | MsG0780036561.01.T01:CDS | 25.0% |
| !! | AATAACCCTTTTTCCAAAAA+AGG | + | Chr7:9835130-9835149 | MsG0780036561.01.T01:CDS | 25.0% |
| !! | AGGTTTTCAAAAAAGAAAGA+AGG | - | Chr7:9834837-9834856 | None:intergenic | 25.0% |
| !! | ATAACCCTTTTTCCAAAAAA+GGG | + | Chr7:9835131-9835150 | MsG0780036561.01.T01:CDS | 25.0% |
| !! | TGTTTCCTTCGATAAAATTT+TGG | + | Chr7:9835016-9835035 | MsG0780036561.01.T01:CDS | 25.0% |
| !!! | AAAAACCCTTTTTTGGAAAA+AGG | - | Chr7:9835139-9835158 | None:intergenic | 25.0% |
| !!! | AAAACCCTTTTTTGGAAAAA+GGG | - | Chr7:9835138-9835157 | None:intergenic | 25.0% |
| !!! | TATGAGATTGATTTTGGTTT+TGG | + | Chr7:9835938-9835957 | MsG0780036561.01.T01:CDS | 25.0% |
| !!! | TCAATTTCTTTGACTTGATT+TGG | + | Chr7:9834751-9834770 | MsG0780036561.01.T01:CDS | 25.0% |
| !!! | TTCATTCTCTTTTTCATGAA+GGG | + | Chr7:9836086-9836105 | MsG0780036561.01.T01:CDS | 25.0% |
| !!! | TTTCATTCTCTTTTTCATGA+AGG | + | Chr7:9836085-9836104 | MsG0780036561.01.T01:CDS | 25.0% |
| AACAAAAGTTGACAATCTCT+TGG | - | Chr7:9835564-9835583 | None:intergenic | 30.0% | |
| AACACACTCTCAAAATCATT+TGG | - | Chr7:9835326-9835345 | None:intergenic | 30.0% | |
| AAGGATGTGATTGTGAATTT+GGG | - | Chr7:9834818-9834837 | None:intergenic | 30.0% | |
| ACAAAAGTTGACAATCTCTT+GGG | - | Chr7:9835563-9835582 | None:intergenic | 30.0% | |
| ACAGAAAGTAGAGATTTGAA+AGG | + | Chr7:9836016-9836035 | MsG0780036561.01.T01:CDS | 30.0% | |
| ATCAAGTCAAAGAAATTGAG+AGG | - | Chr7:9834750-9834769 | None:intergenic | 30.0% | |
| GACATTGATGTCTAGATATA+TGG | + | Chr7:9835856-9835875 | MsG0780036561.01.T01:CDS | 30.0% | |
| GAGATTACTTCAATTGATAG+AGG | + | Chr7:9835977-9835996 | MsG0780036561.01.T01:CDS | 30.0% | |
| TCAAGTCAAAGAAATTGAGA+GGG | - | Chr7:9834749-9834768 | None:intergenic | 30.0% | |
| TCCAAATGGTACATTGTAAA+AGG | + | Chr7:9835506-9835525 | MsG0780036561.01.T01:CDS | 30.0% | |
| TCTAGATATATGGCTATACT+TGG | + | Chr7:9835866-9835885 | MsG0780036561.01.T01:CDS | 30.0% | |
| ! | CAATTTCCAAAGTAGTTTTC+AGG | - | Chr7:9835710-9835729 | None:intergenic | 30.0% |
| ! | GATGATTTTACAAAGGAAGA+TGG | + | Chr7:9835761-9835780 | MsG0780036561.01.T01:CDS | 30.0% |
| ! | TCCTTTTACAATGTACCATT+TGG | - | Chr7:9835510-9835529 | None:intergenic | 30.0% |
| ! | TGAGTCAGATGATTTTACAA+AGG | + | Chr7:9835754-9835773 | MsG0780036561.01.T01:CDS | 30.0% |
| ! | TTTGAGAGTGTGTTCATAAA+TGG | + | Chr7:9835332-9835351 | MsG0780036561.01.T01:CDS | 30.0% |
| !! | GGAGTATATGAGATTGATTT+TGG | + | Chr7:9835932-9835951 | MsG0780036561.01.T01:CDS | 30.0% |
| !! | TAAAGGTAGGAATTTTTGGA+GGG | - | Chr7:9834892-9834911 | None:intergenic | 30.0% |
| !! | TCCAAAAAGGGTTCTAAAAA+AGG | - | Chr7:9835284-9835303 | None:intergenic | 30.0% |
| !! | TTTAGAACCCTTTTTGGAAA+GGG | + | Chr7:9835286-9835305 | MsG0780036561.01.T01:CDS | 30.0% |
| !!! | ACTGGTTTTGAAGAATTAGA+AGG | - | Chr7:9834933-9834952 | None:intergenic | 30.0% |
| !!! | AGATTGATTTTGGTTTTGGA+AGG | + | Chr7:9835942-9835961 | MsG0780036561.01.T01:CDS | 30.0% |
| !!! | TCCTTTTTTAGAACCCTTTT+TGG | + | Chr7:9835280-9835299 | MsG0780036561.01.T01:CDS | 30.0% |
| !!! | TTTTAGAACCCTTTTTGGAA+AGG | + | Chr7:9835285-9835304 | MsG0780036561.01.T01:CDS | 30.0% |
| AAGGAAACTCCATCTTCATT+TGG | - | Chr7:9834969-9834988 | None:intergenic | 35.0% | |
| AATTGAGAGGGAGAGATAAT+TGG | - | Chr7:9834737-9834756 | None:intergenic | 35.0% | |
| AGAAGAAGATACGTTCAACT+GGG | - | Chr7:9834788-9834807 | None:intergenic | 35.0% | |
| AGAGTGTGTTCATAAATGGT+TGG | + | Chr7:9835336-9835355 | MsG0780036561.01.T01:CDS | 35.0% | |
| ATGTGATTGTGAATTTGGGA+GGG | - | Chr7:9834814-9834833 | None:intergenic | 35.0% | |
| CAAAAATTCCTACCTTTAGC+TGG | + | Chr7:9834894-9834913 | MsG0780036561.01.T01:CDS | 35.0% | |
| CAAACAATGTTACCAGCTAA+AGG | - | Chr7:9834909-9834928 | None:intergenic | 35.0% | |
| CAGTTCAATCCAAATGAAGA+TGG | + | Chr7:9834957-9834976 | MsG0780036561.01.T01:CDS | 35.0% | |
| CATCTTCATTTGGATTGAAC+TGG | - | Chr7:9834959-9834978 | None:intergenic | 35.0% | |
| CTTTAGCTGGTAACATTGTT+TGG | + | Chr7:9834907-9834926 | MsG0780036561.01.T01:CDS | 35.0% | |
| GAAAGTAGAGATTTGAAAGG+TGG | + | Chr7:9836019-9836038 | MsG0780036561.01.T01:CDS | 35.0% | |
| GAAGGATGTGATTGTGAATT+TGG | - | Chr7:9834819-9834838 | None:intergenic | 35.0% | |
| GAGAAACTTTGCATTGTTCA+CGG | - | Chr7:9834701-9834720 | None:intergenic | 35.0% | |
| TAGAAGAAGATACGTTCAAC+TGG | - | Chr7:9834789-9834808 | None:intergenic | 35.0% | |
| TGTTCTTGATAAGCATGTGA+TGG | + | Chr7:9836057-9836076 | MsG0780036561.01.T01:CDS | 35.0% | |
| ! | ATTTTCCATCAAGAACAGCA+TGG | - | Chr7:9835181-9835200 | None:intergenic | 35.0% |
| ! | CAGCTAAAGGTAGGAATTTT+TGG | - | Chr7:9834896-9834915 | None:intergenic | 35.0% |
| ! | CCAAAAAAGGGTTTTTCCAT+TGG | + | Chr7:9835143-9835162 | MsG0780036561.01.T01:CDS | 35.0% |
| ! | CGAACAGAATCCTTAACTTT+TGG | - | Chr7:9835431-9835450 | None:intergenic | 35.0% |
| ! | GTGCTCCAAAATTTTATCGA+AGG | - | Chr7:9835024-9835043 | None:intergenic | 35.0% |
| !! | ATTGTTCACGGATTTTGATG+CGG | - | Chr7:9834689-9834708 | None:intergenic | 35.0% |
| !! | CTAAAGGTAGGAATTTTTGG+AGG | - | Chr7:9834893-9834912 | None:intergenic | 35.0% |
| !! | GAATCTGTTGATTCTAAGTG+AGG | - | Chr7:9835086-9835105 | None:intergenic | 35.0% |
| !! | GATAATTGGTTTGCAGAGTT+AGG | - | Chr7:9834723-9834742 | None:intergenic | 35.0% |
| !! | TCTTTGACTTGATTTGGCTA+AGG | + | Chr7:9834757-9834776 | MsG0780036561.01.T01:CDS | 35.0% |
| !! | TTAGAACCCTTTTTGGAAAG+GGG | + | Chr7:9835287-9835306 | MsG0780036561.01.T01:CDS | 35.0% |
| !!! | AAGATCTGAGTTTTGGAACA+AGG | - | Chr7:9834857-9834876 | None:intergenic | 35.0% |
| !!! | CCAATGGAAAAACCCTTTTT+TGG | - | Chr7:9835146-9835165 | None:intergenic | 35.0% |
| ACTACTCCCCTTTCCAAAAA+GGG | - | Chr7:9835296-9835315 | None:intergenic | 40.0% | |
| AGTTAAGGATTCTGTTCGAG+TGG | + | Chr7:9835433-9835452 | MsG0780036561.01.T01:CDS | 40.0% | |
| ATCACATTGTGCTAAGAGCA+AGG | - | Chr7:9834988-9835007 | None:intergenic | 40.0% | |
| ATGGTGTGTGCTTATTCCAA+TGG | - | Chr7:9835162-9835181 | None:intergenic | 40.0% | |
| CAATGTTACCAGCTAAAGGT+AGG | - | Chr7:9834905-9834924 | None:intergenic | 40.0% | |
| CCAGTTCCTGAAAACTACTT+TGG | + | Chr7:9835701-9835720 | MsG0780036561.01.T01:CDS | 40.0% | |
| GATGTGATTGTGAATTTGGG+AGG | - | Chr7:9834815-9834834 | None:intergenic | 40.0% | |
| TACTACTCCCCTTTCCAAAA+AGG | - | Chr7:9835297-9835316 | None:intergenic | 40.0% | |
| TATATGGCTATACTTGGCGA+AGG | + | Chr7:9835872-9835891 | MsG0780036561.01.T01:CDS | 40.0% | |
| TTCATGGAATAGGAGTTGCA+GGG | + | Chr7:9835897-9835916 | MsG0780036561.01.T01:CDS | 40.0% | |
| TTTGGAAAGGGGAGTAGTAA+AGG | + | Chr7:9835298-9835317 | MsG0780036561.01.T01:CDS | 40.0% | |
| TTTGGATTGAACTGGATGAC+TGG | - | Chr7:9834951-9834970 | None:intergenic | 40.0% | |
| ! | GAGAGTGAAGATCTGAGTTT+TGG | - | Chr7:9834864-9834883 | None:intergenic | 40.0% |
| ! | TGAAAGGTGGTGTTGAGTTT+GGG | + | Chr7:9836032-9836051 | MsG0780036561.01.T01:CDS | 40.0% |
| ! | TTGAAAGGTGGTGTTGAGTT+TGG | + | Chr7:9836031-9836050 | MsG0780036561.01.T01:CDS | 40.0% |
| !! | AAGTAGTTTTCAGGAACTGG+TGG | - | Chr7:9835701-9835720 | None:intergenic | 40.0% |
| !! | ATGGATAAGGGTGTTCTTGA+TGG | + | Chr7:9835827-9835846 | MsG0780036561.01.T01:CDS | 40.0% |
| !! | CCAAAGTAGTTTTCAGGAAC+TGG | - | Chr7:9835704-9835723 | None:intergenic | 40.0% |
| !! | GAAGTAATCTCCACTTTTCC+AGG | - | Chr7:9835968-9835987 | None:intergenic | 40.0% |
| ACACACCATGCTGTTCTTGA+TGG | + | Chr7:9835173-9835192 | MsG0780036561.01.T01:CDS | 45.0% | |
| ATACTTGGCGAAGGAGTTCA+TGG | + | Chr7:9835881-9835900 | MsG0780036561.01.T01:CDS | 45.0% | |
| CCACCATGTTCATCAAAGCT+TGG | + | Chr7:9835204-9835223 | MsG0780036561.01.T01:CDS | 45.0% | |
| CGAGACAAAGAAGCTTCTTG+TGG | - | Chr7:9835053-9835072 | None:intergenic | 45.0% | |
| GAGTGACGTGAGAAGCTTAA+AGG | + | Chr7:9835385-9835404 | MsG0780036561.01.T01:CDS | 45.0% | |
| GTTCATGGAATAGGAGTTGC+AGG | + | Chr7:9835896-9835915 | MsG0780036561.01.T01:CDS | 45.0% | |
| GTTGCAGGGTCAACAAGATT+TGG | + | Chr7:9835911-9835930 | MsG0780036561.01.T01:CDS | 45.0% | |
| ! | CCAAGCTTTGATGAACATGG+TGG | - | Chr7:9835207-9835226 | None:intergenic | 45.0% |
| ! | GGACCAAGCTTTGATGAACA+TGG | - | Chr7:9835210-9835229 | None:intergenic | 45.0% |
| !! | ACAACAGGGTGTTGTCCAAA+TGG | + | Chr7:9835492-9835511 | MsG0780036561.01.T01:CDS | 45.0% |
| !! | CGGATTTTGATGCGGTTGTT+TGG | - | Chr7:9834681-9834700 | None:intergenic | 45.0% |
| !! | TTTTGGAAGGCCTGGAAAAG+TGG | + | Chr7:9835955-9835974 | MsG0780036561.01.T01:CDS | 45.0% |
| !!! | GATTTTGGTTTTGGAAGGCC+TGG | + | Chr7:9835947-9835966 | MsG0780036561.01.T01:CDS | 45.0% |
| GGCGAAGGAGTTCATGGAAT+AGG | + | Chr7:9835887-9835906 | MsG0780036561.01.T01:CDS | 50.0% | |
| GTGGCATTCGAGCTCACACG+CGG | + | Chr7:9835452-9835471 | MsG0780036561.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 9834669 | 9836123 | 9834669 | ID=MsG0780036561.01;Name=MsG0780036561.01 |
| Chr7 | mRNA | 9834669 | 9836123 | 9834669 | ID=MsG0780036561.01.T01;Parent=MsG0780036561.01;Name=MsG0780036561.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|484 |
| Chr7 | exon | 9834669 | 9836123 | 9834669 | ID=MsG0780036561.01.T01:exon:1533;Parent=MsG0780036561.01.T01 |
| Chr7 | CDS | 9834669 | 9836123 | 9834669 | ID=MsG0780036561.01.T01:cds;Parent=MsG0780036561.01.T01 |
| Gene Sequence |
| Protein sequence |
