AlfalfaGEDB | MsG0280010816.01

M. sativa cultivar ZhongmuNo.1 / MsG0280010816.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010816.01.T01	KEH39254.1	78.68	197	6	2	9	169	86	282	6.86E-92	290

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010816.01.T01	Q9LNC4	51.538	130	51	4	43	167	273	395	5.66E-27	110

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010816.01.T01	A0A072VB50	78.680	197	6	2	9	169	86	282	3.27e-92	290

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047825.01	MsG0280010816.01	0.828393	9.219277e-55	9.151863e-52
MsG0080047957.01	MsG0280010816.01	0.808523	2.970473e-50	1.702258e-47
MsG0080047958.01	MsG0280010816.01	0.802760	4.813678e-49	2.377501e-46
MsG0080048058.01	MsG0280010816.01	0.858965	5.734420e-63	1.490055e-59
MsG0080048177.01	MsG0280010816.01	0.824599	7.396411e-54	6.582712e-51
MsG0080048178.01	MsG0280010816.01	0.876512	1.316035e-68	6.398228e-65
MsG0080048461.01	MsG0280010816.01	0.850930	1.234721e-60	2.458122e-57
MsG0080048462.01	MsG0280010816.01	0.806221	9.138280e-50	4.932879e-47
MsG0080048602.01	MsG0280010816.01	0.836951	6.925756e-57	8.863886e-54
MsG0080048765.01	MsG0280010816.01	0.847471	1.132553e-59	2.015256e-56

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010816.01.T01	MTR_2g091135	78.680	197	6	2	9	169	86	282	8.30e-96	290
MsG0280010816.01.T01	MTR_2g091135	78.680	197	6	2	9	169	86	282	1.78e-95	290
MsG0280010816.01.T01	MTR_2g091130	76.884	199	9	2	8	169	73	271	1.40e-93	285
MsG0280010816.01.T01	MTR_4g079650	60.000	130	50	2	43	172	506	633	7.90e-34	126
MsG0280010816.01.T01	MTR_4g079650	60.000	130	50	2	43	172	506	633	8.15e-34	126
MsG0280010816.01.T01	MTR_4g079650	60.000	130	50	2	43	172	506	633	8.78e-34	126

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010816.01.T01	AT1G06230	51.538	130	51	4	43	167	273	395	5.77e-28	110
MsG0280010816.01.T01	AT1G06230	51.538	130	51	4	43	167	273	395	5.77e-28	110
MsG0280010816.01.T01	AT1G06230	51.538	130	51	4	43	167	273	395	5.77e-28	110
MsG0280010816.01.T01	AT1G06230	51.538	130	51	4	43	167	273	395	5.77e-28	110

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Find 61 sgRNAs with CRISPR-Local

Find 68 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCACATGGAAAGAAGCA+TGG	0.633912	2:+75416282	MsG0280010816.01.T01:CDS
AACCTAGAATTCACAACTGG+CGG	0.610102	2:-75415732	None:intergenic
AAGAGAAACAACGGATGGCT+GGG	0.537737	2:+75415981	MsG0280010816.01.T01:CDS
AAGAGATGCGGGAGATTAAG+AGG	0.463397	2:+75415909	MsG0280010816.01.T01:CDS
AAGCATGGCGTTGGAGAAAT+AGG	0.295219	2:+75416297	MsG0280010816.01.T01:CDS
AAGGCGACCTTGAAACGGTG+AGG	0.688100	2:+75415939	MsG0280010816.01.T01:CDS
AAGGGTTGGAGAATGGTTCA+CGG	0.586475	2:+75415879	MsG0280010816.01.T01:CDS
ACGGTCAAAGCAAGAGATGC+GGG	0.533396	2:+75415898	MsG0280010816.01.T01:CDS
AGAAACAACGGATGGCTGGG+AGG	0.697772	2:+75415984	MsG0280010816.01.T01:CDS
AGCTAAGCGCGCTCACTCGG+AGG	0.646095	2:+75416063	MsG0280010816.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAACAAGAAGTCAAATCACA+TGG	+	Chr2:75416270-75416289	MsG0280010816.01.T01:CDS	30.0%
TTAAGATGTCACGATAAGAA+GGG	+	Chr2:75415861-75415880	MsG0280010816.01.T01:intron	30.0%
TTAGGATTGAAGAGAAACAA+CGG	+	Chr2:75415972-75415991	MsG0280010816.01.T01:CDS	30.0%
AAATCACATGGAAAGAAGCA+TGG	+	Chr2:75416282-75416301	MsG0280010816.01.T01:CDS	35.0%
ATTCCGAATTGGAATAGAAC+TGG	-	Chr2:75416213-75416232	None:intergenic	35.0%
CTAACACCATTACACTTAAC+TGG	-	Chr2:75416132-75416151	None:intergenic	35.0%
GAACCAGTTCTATTCCAATT+CGG	+	Chr2:75416207-75416226	MsG0280010816.01.T01:CDS	35.0%
TTATCGTGACATCTTAAAGC+TGG	-	Chr2:75415858-75415877	None:intergenic	35.0%
AACCTAGAATTCACAACTGG+CGG	-	Chr2:75415735-75415754	None:intergenic	40.0%
ATGTGTCTGTGGATCGTTAT+AGG	+	Chr2:75416023-75416042	MsG0280010816.01.T01:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	75415678	75416318	75415678	ID=MsG0280010816.01;Name=MsG0280010816.01
Chr2	mRNA	75415678	75416318	75415678	ID=MsG0280010816.01.T01;Parent=MsG0280010816.01;Name=MsG0280010816.01.T01;_AED=0.48;_eAED=0.49;_QI=0\|0\|0\|1\|1\|1\|2\|0\|183
Chr2	exon	75415678	75415789	75415678	ID=MsG0280010816.01.T01:exon:11117;Parent=MsG0280010816.01.T01
Chr2	exon	75415879	75416318	75415879	ID=MsG0280010816.01.T01:exon:11118;Parent=MsG0280010816.01.T01
Chr2	CDS	75415678	75415789	75415678	ID=MsG0280010816.01.T01:cds;Parent=MsG0280010816.01.T01
Chr2	CDS	75415879	75416318	75415879	ID=MsG0280010816.01.T01:cds;Parent=MsG0280010816.01.T01

Gene Sequence

>MsG0280010816.01.T01

ATGTTTCGGTTCAACAGTTGGATGGTTTTGGTTCCGGAGGATGGGAATTCGGCTCCGCCAGTTGTGAATTCTAGGTTGGACGTGGTTTCTGAAGATTCGTCGAGTTTGTATCAAGGGTTGGAGAATGGTTCACGGTCAAAGCAAGAGATGCGGGAGATTAAGAGGAAGCTTGAAGGCGACCTTGAAACGGTGAGGTCTTTGGTGATTAGGATTGAAGAGAAACAACGGATGGCTGGGAGGTATGGTGGTGGTTTGAATGTGTCTGTGGATCGTTATAGGGTTGATAATGGGAGTGGAGCTAAGCGCGCTCACTCGGAGGTAGCTTCTGCAGGTGTTCCGAGAGAGGCTAATAGGTTTACACGCCAGTTAAGTGTAATGGTGTTAGAGAATGGTCACGGGGTTAGTGAAAGTGTTGAGAAGGAGAAGAGAACACCTAAGGCGAACCAGTTCTATTCCAATTCGGAATTCTTGCTTGCGAAAGATAAGTTTCCGCCTGCTGAGAGTAACAAGAAGTCAAATCACATGGAAAGAAGCATGGCGTTGGAGAAATAG

Protein sequence

>MsG0280010816.01.T01

MFRFNSWMVLVPEDGNSAPPVVNSRLDVVSEDSSSLYQGLENGSRSKQEMREIKRKLEGDLETVRSLVIRIEEKQRMAGRYGGGLNVSVDRYRVDNGSGAKRAHSEVASAGVPREANRFTRQLSVMVLENGHGVSESVEKEKRTPKANQFYSNSEFLLAKDKFPPAESNKKSNHMERSMALEK*