Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011253.01.T01 | XP_003597655.2 | 91.939 | 521 | 39 | 2 | 1 | 520 | 1 | 519 | 0 | 973 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011253.01.T01 | Q9LI74 | 38.158 | 380 | 208 | 10 | 97 | 457 | 85 | 456 | 5.86E-58 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011253.01.T01 | G7IHX7 | 91.939 | 521 | 39 | 2 | 1 | 520 | 1 | 519 | 0.0 | 973 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180004079.01 | MsG0280011253.01 | 0.802670 | 5.025556e-49 | 2.476314e-46 |
| MsG0180004157.01 | MsG0280011253.01 | 0.800379 | 1.481925e-48 | 6.890015e-46 |
| MsG0280006356.01 | MsG0280011253.01 | 0.813093 | 3.047642e-51 | 1.971498e-48 |
| MsG0280011253.01 | MsG0280011446.01 | 0.808986 | 2.365372e-50 | 1.372049e-47 |
| MsG0280011253.01 | MsG0380013047.01 | 0.815236 | 1.025271e-51 | 7.029208e-49 |
| MsG0280011253.01 | MsG0380014573.01 | 0.801777 | 7.673560e-49 | 3.696021e-46 |
| MsG0280011253.01 | MsG0380016244.01 | 0.800730 | 1.256599e-48 | 5.894476e-46 |
| MsG0280011253.01 | MsG0380016581.01 | 0.807135 | 5.859767e-50 | 3.238090e-47 |
| MsG0280011253.01 | MsG0380017403.01 | 0.801759 | 7.737776e-49 | 3.725204e-46 |
| MsG0280011253.01 | MsG0380018009.01 | 0.807429 | 5.076788e-50 | 2.827046e-47 |
| MsG0280011253.01 | MsG0480020886.01 | 0.800895 | 1.162826e-48 | 5.477835e-46 |
| MsG0280011253.01 | MsG0480023088.01 | 0.822995 | 1.757846e-53 | 1.494766e-50 |
| MsG0280011253.01 | MsG0780038921.01 | 0.809099 | 2.237426e-50 | 1.301841e-47 |
| MsG0280011253.01 | MsG0780040442.01 | 0.864030 | 1.629603e-64 | 5.043563e-61 |
| MsG0280011253.01 | MsG0880041985.01 | 0.809107 | 2.227603e-50 | 1.296434e-47 |
| MsG0280011253.01 | MsG0880042843.01 | 0.814721 | 1.333834e-51 | 9.018592e-49 |
| MsG0280011253.01 | MsG0880043442.01 | 0.832423 | 9.535486e-56 | 1.065312e-52 |
| MsG0280011253.01 | MsG0880046209.01 | 0.809526 | 1.811595e-50 | 1.066131e-47 |
| MsG0280011253.01 | MsG0880047375.01 | 0.824293 | 8.730046e-54 | 7.700095e-51 |
| MsG0280007815.01 | MsG0280011253.01 | 0.807692 | 4.463908e-50 | 2.502720e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011253.01.T01 | MTR_2g100630 | 91.939 | 521 | 39 | 2 | 1 | 520 | 1 | 519 | 0.0 | 973 |
| MsG0280011253.01.T01 | MTR_2g100630 | 92.662 | 477 | 32 | 2 | 45 | 520 | 4 | 478 | 0.0 | 895 |
| MsG0280011253.01.T01 | MTR_8g014900 | 54.343 | 495 | 187 | 9 | 5 | 478 | 15 | 491 | 1.02e-156 | 459 |
| MsG0280011253.01.T01 | MTR_5g053270 | 34.615 | 468 | 268 | 13 | 13 | 457 | 1 | 453 | 7.91e-57 | 205 |
| MsG0280011253.01.T01 | MTR_1g093850 | 34.171 | 398 | 218 | 9 | 95 | 458 | 87 | 474 | 1.58e-51 | 189 |
| MsG0280011253.01.T01 | MTR_1g061840 | 20.745 | 376 | 225 | 8 | 10 | 362 | 11 | 336 | 5.93e-15 | 77.4 |
| MsG0280011253.01.T01 | MTR_1g016290 | 33.526 | 173 | 89 | 6 | 211 | 360 | 131 | 300 | 5.43e-12 | 68.9 |
| MsG0280011253.01.T01 | MTR_0170s0030 | 22.924 | 301 | 199 | 7 | 143 | 433 | 88 | 365 | 7.76e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011253.01.T01 | AT1G52080 | 41.767 | 498 | 246 | 10 | 1 | 472 | 1 | 480 | 7.37e-102 | 318 |
| MsG0280011253.01.T01 | AT1G52080 | 41.767 | 498 | 246 | 10 | 1 | 472 | 1 | 480 | 7.37e-102 | 318 |
| MsG0280011253.01.T01 | AT3G25690 | 38.158 | 380 | 208 | 10 | 97 | 457 | 87 | 458 | 5.42e-59 | 211 |
| MsG0280011253.01.T01 | AT3G25690 | 38.158 | 380 | 208 | 10 | 97 | 457 | 85 | 456 | 5.97e-59 | 211 |
| MsG0280011253.01.T01 | AT3G25690 | 38.158 | 380 | 208 | 10 | 97 | 457 | 85 | 456 | 5.97e-59 | 211 |
| MsG0280011253.01.T01 | AT3G25690 | 38.158 | 380 | 208 | 10 | 97 | 457 | 85 | 456 | 5.97e-59 | 211 |
| MsG0280011253.01.T01 | AT3G25690 | 38.158 | 380 | 208 | 10 | 97 | 457 | 85 | 456 | 5.97e-59 | 211 |
| MsG0280011253.01.T01 | AT3G25690 | 38.078 | 281 | 147 | 7 | 191 | 457 | 48 | 315 | 1.97e-39 | 153 |
Find 82 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTATCTTCAATCTATTT+TGG | 0.113134 | 2:+81478561 | None:intergenic |
| TCAACTCCGGTTGATGTATT+TGG | 0.193803 | 2:+81477645 | None:intergenic |
| AAGCAGAACCTTTGTATTCT+TGG | 0.194952 | 2:+81478324 | None:intergenic |
| AAACCAAAGTTCACTAAAAT+TGG | 0.198104 | 2:+81479540 | None:intergenic |
| CATTCCCACGGGTCGTTCTT+CGG | 0.232519 | 2:-81479460 | MsG0280011253.01.T01:CDS |
| CATGAAAGTGAAGTTAATTT+AGG | 0.245225 | 2:-81479354 | MsG0280011253.01.T01:CDS |
| CTGGCTTGTGGTATTAGTTC+TGG | 0.298503 | 2:+81477788 | None:intergenic |
| GTTAATTTAGGAGAAGATAT+TGG | 0.305923 | 2:-81479342 | MsG0280011253.01.T01:CDS |
| TGTTCATAGTCATTCTTATC+AGG | 0.308397 | 2:+81478701 | None:intergenic |
| TAGATTGAAGATAAGTAATA+TGG | 0.320175 | 2:-81478555 | MsG0280011253.01.T01:CDS |
| TTCTAAGACACTCACTTTCT+CGG | 0.328184 | 2:+81478153 | None:intergenic |
| AGTGAACTTTGGTTTGGCTT+TGG | 0.341141 | 2:-81479532 | MsG0280011253.01.T01:CDS |
| GCGTGAAGCCGAACAAAATA+AGG | 0.350475 | 2:-81478390 | MsG0280011253.01.T01:CDS |
| AGTGGAGAAGGTTCCTTCTC+TGG | 0.354021 | 2:-81477585 | MsG0280011253.01.T01:CDS |
| ATTCCCACGGGTCGTTCTTC+GGG | 0.359679 | 2:-81479459 | MsG0280011253.01.T01:intron |
| TTAACGAGCTCATCAAATTC+AGG | 0.370254 | 2:+81478788 | None:intergenic |
| CTTGAATATGCTGATACTAA+TGG | 0.370950 | 2:-81477924 | MsG0280011253.01.T01:CDS |
| AGGCATAGAGAAATCCGATT+TGG | 0.378976 | 2:-81477556 | MsG0280011253.01.T01:CDS |
| ATATTCAAGTATAAGCTGTT+TGG | 0.395368 | 2:+81477938 | None:intergenic |
| AGGAGATATTCAAGTTTAAG+TGG | 0.414108 | 2:-81477603 | MsG0280011253.01.T01:CDS |
| TTTCAGTTGCAGTGAACAAA+AGG | 0.416217 | 2:-81478834 | MsG0280011253.01.T01:CDS |
| AACGACTCAATAATGAAATT+AGG | 0.417238 | 2:-81478412 | MsG0280011253.01.T01:CDS |
| AAGAATTAGTTTACATGCGT+TGG | 0.421265 | 2:-81478067 | MsG0280011253.01.T01:CDS |
| AGCCAGCACCTTTGCATGAT+CGG | 0.425770 | 2:+81478463 | None:intergenic |
| TTATGACTTAGCTCGAAGAT+TGG | 0.431098 | 2:-81478207 | MsG0280011253.01.T01:CDS |
| TTGGCTTTCTTCTCAGAAGA+GGG | 0.441695 | 2:+81477957 | None:intergenic |
| ATGGTAGAACTTCATTTGAT+AGG | 0.445522 | 2:-81477623 | MsG0280011253.01.T01:CDS |
| TGGGAATGATTCCTGTGATT+CGG | 0.445626 | 2:+81479475 | None:intergenic |
| AATACATCAACCGGAGTTGA+TGG | 0.452802 | 2:-81477642 | MsG0280011253.01.T01:CDS |
| AGAGCAAGAAACAGTTGTAA+TGG | 0.455006 | 2:-81478588 | MsG0280011253.01.T01:CDS |
| TACTCGCGCCTCCGAATCAC+AGG | 0.457694 | 2:-81479486 | MsG0280011253.01.T01:CDS |
| TGCCGATCATGCAAAGGTGC+TGG | 0.458779 | 2:-81478465 | MsG0280011253.01.T01:CDS |
| TGAATTTGATGAGCTCGTTA+AGG | 0.465180 | 2:-81478786 | MsG0280011253.01.T01:CDS |
| ACATGGCCAAATACATCAAC+CGG | 0.465931 | 2:-81477651 | MsG0280011253.01.T01:CDS |
| TGATAAGAATGACTATGAAC+AGG | 0.473154 | 2:-81478699 | MsG0280011253.01.T01:CDS |
| GTATTCTTGGTCTTGCAACT+TGG | 0.480068 | 2:+81478337 | None:intergenic |
| TATGCTGATACTAATGGAGC+AGG | 0.481779 | 2:-81477918 | MsG0280011253.01.T01:CDS |
| CTTCTGCATATTCTCCAAAT+CGG | 0.482572 | 2:+81477542 | None:intergenic |
| GAATCGGAGATTAAAAGAAC+AGG | 0.482838 | 2:-81478489 | MsG0280011253.01.T01:CDS |
| GATGAAGAAGAAGGAAGAGA+AGG | 0.483234 | 2:-81479571 | MsG0280011253.01.T01:CDS |
| TCATCGTCGTCATCATAGTC+AGG | 0.507803 | 2:-81477706 | MsG0280011253.01.T01:CDS |
| ACTACATTCTGATCGATGTT+CGG | 0.509192 | 2:-81478096 | MsG0280011253.01.T01:CDS |
| TTTGGCTTTCTTCTCAGAAG+AGG | 0.515916 | 2:+81477956 | None:intergenic |
| AAAACTTACAGACTGAGAAT+CGG | 0.518342 | 2:-81478505 | MsG0280011253.01.T01:CDS |
| GCTTCTTCTATTACTGACTC+TGG | 0.521368 | 2:-81477852 | MsG0280011253.01.T01:CDS |
| TATTCAAGTTTAAGTGGAGA+AGG | 0.524814 | 2:-81477597 | MsG0280011253.01.T01:CDS |
| ATGAAGAAGAAGGAAGAGAA+GGG | 0.525563 | 2:-81479570 | MsG0280011253.01.T01:CDS |
| GAGGCACAGAGGTTAAAAGT+AGG | 0.527073 | 2:-81478746 | MsG0280011253.01.T01:CDS |
| TACTTTCAACACTGTTTCAG+AGG | 0.544635 | 2:-81479307 | MsG0280011253.01.T01:intron |
| TTCAGTTGCAGTGAACAAAA+GGG | 0.551359 | 2:-81478833 | MsG0280011253.01.T01:CDS |
| AACAGGAGATAATTCAACTT+AGG | 0.560012 | 2:-81478682 | MsG0280011253.01.T01:CDS |
| TGGCTTTCTTCTCAGAAGAG+GGG | 0.564881 | 2:+81477958 | None:intergenic |
| GGAGGTAGAGTTCGAAGTAG+AGG | 0.566564 | 2:-81478765 | MsG0280011253.01.T01:CDS |
| AGGCACAGAGGTTAAAAGTA+GGG | 0.568123 | 2:-81478745 | MsG0280011253.01.T01:CDS |
| AGTCTGAAGTAGAAGAGTTG+AGG | 0.571431 | 2:-81478259 | MsG0280011253.01.T01:CDS |
| GGTTAGATTGCTTCAAGACA+AGG | 0.573945 | 2:-81478654 | MsG0280011253.01.T01:CDS |
| GGTGAAGATGTTCAATCTGA+AGG | 0.577155 | 2:-81478531 | MsG0280011253.01.T01:CDS |
| AGTAATAGAAGAAGCTTGTG+AGG | 0.586514 | 2:+81477860 | None:intergenic |
| ATTGAAGATAAGTAATATGG+AGG | 0.603014 | 2:-81478552 | MsG0280011253.01.T01:CDS |
| ACACAATAAAACAGTTGCAA+AGG | 0.605474 | 2:-81478000 | MsG0280011253.01.T01:CDS |
| ATCACAGGAATCATTCCCAC+GGG | 0.606456 | 2:-81479471 | MsG0280011253.01.T01:CDS |
| CTTGTTTACGATATGAGTTG+CGG | 0.607406 | 2:-81478037 | MsG0280011253.01.T01:CDS |
| GAATGATTCCTGTGATTCGG+AGG | 0.608282 | 2:+81479478 | None:intergenic |
| TAGGAGAATGATACAAGGAA+AGG | 0.611027 | 2:-81477745 | MsG0280011253.01.T01:CDS |
| TGAAGTTCTACCATCAACTC+CGG | 0.614419 | 2:+81477632 | None:intergenic |
| AAACATGCACCCGCGGATCG+AGG | 0.623688 | 2:-81478880 | MsG0280011253.01.T01:CDS |
| GATAATTCAACTTAGGAACA+TGG | 0.624258 | 2:-81478675 | MsG0280011253.01.T01:CDS |
| ATTTGATGAGCTCGTTAAGG+AGG | 0.625163 | 2:-81478783 | MsG0280011253.01.T01:CDS |
| ACAGGCTGCCGATCATGCAA+AGG | 0.626568 | 2:-81478471 | MsG0280011253.01.T01:CDS |
| AATCACAGGAATCATTCCCA+CGG | 0.628196 | 2:-81479472 | MsG0280011253.01.T01:CDS |
| GTTCAGTTGCTTGAGTACTG+TGG | 0.633821 | 2:-81478617 | MsG0280011253.01.T01:CDS |
| CAGGAAGAAACATGCACCCG+CGG | 0.640821 | 2:-81478887 | MsG0280011253.01.T01:CDS |
| AAGAAGATAGCAATTCTACA+TGG | 0.649518 | 2:-81477668 | MsG0280011253.01.T01:CDS |
| AAGCTTAGGAGAATGATACA+AGG | 0.653632 | 2:-81477750 | MsG0280011253.01.T01:CDS |
| ATACCCGAAGAACGACCCGT+GGG | 0.659867 | 2:+81479456 | None:intergenic |
| ATGCTGATACTAATGGAGCA+GGG | 0.665373 | 2:-81477917 | MsG0280011253.01.T01:CDS |
| TTGCAAGACCAAGAATACAA+AGG | 0.679454 | 2:-81478332 | MsG0280011253.01.T01:CDS |
| AATACCCGAAGAACGACCCG+TGG | 0.683258 | 2:+81479455 | None:intergenic |
| AGTTCGAAGTAGAGGCACAG+AGG | 0.686642 | 2:-81478757 | MsG0280011253.01.T01:CDS |
| AGACAAGGAACAGAATCTCG+AGG | 0.707465 | 2:-81478639 | MsG0280011253.01.T01:CDS |
| GTGTCTTAGAAAAGAAAACG+AGG | 0.744245 | 2:-81478141 | MsG0280011253.01.T01:CDS |
| GACGACGATGATGATGACGA+TGG | 0.780952 | 2:+81477718 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAGATAAATAATGTA+AGG | - | Chr2:81478082-81478101 | MsG0280011253.01.T01:CDS | 10.0% |
| !!! | ATTTTATAGTATTAACTGTT+TGG | - | Chr2:81477839-81477858 | MsG0280011253.01.T01:CDS | 15.0% |
| !!! | TAAATTTTGATTTTGATCAA+CGG | - | Chr2:81479222-81479241 | MsG0280011253.01.T01:intron | 15.0% |
| !! | TAGATTGAAGATAAGTAATA+TGG | - | Chr2:81478554-81478573 | MsG0280011253.01.T01:CDS | 20.0% |
| !! | TATTGAATTTCCTATATAAC+AGG | - | Chr2:81478203-81478222 | MsG0280011253.01.T01:CDS | 20.0% |
| !! | TCAAACAATGAAACTAAAAT+AGG | - | Chr2:81478178-81478197 | MsG0280011253.01.T01:CDS | 20.0% |
| !! | TTGAAATAGCAAATCTATAT+GGG | + | Chr2:81478064-81478083 | None:intergenic | 20.0% |
| !! | TTTGTATTTCAAAATTGAAC+TGG | - | Chr2:81477862-81477881 | MsG0280011253.01.T01:CDS | 20.0% |
| !!! | TACTTATCTTCAATCTATTT+TGG | + | Chr2:81478551-81478570 | None:intergenic | 20.0% |
| !!! | TATCTTTTCCTTATTTTGTT+CGG | + | Chr2:81478730-81478749 | None:intergenic | 20.0% |
| !!! | TTTGAAATAGCAAATCTATA+TGG | + | Chr2:81478065-81478084 | None:intergenic | 20.0% |
| ! | AAACCAAAGTTCACTAAAAT+TGG | + | Chr2:81477572-81477591 | None:intergenic | 25.0% |
| ! | AACGACTCAATAATGAAATT+AGG | - | Chr2:81478697-81478716 | MsG0280011253.01.T01:CDS | 25.0% |
| ! | ATAAATAATGTAAGGAGTTG+AGG | - | Chr2:81478090-81478109 | MsG0280011253.01.T01:CDS | 25.0% |
| ! | ATATTCAAGTATAAGCTGTT+TGG | + | Chr2:81479174-81479193 | None:intergenic | 25.0% |
| ! | ATTGAAGATAAGTAATATGG+AGG | - | Chr2:81478557-81478576 | MsG0280011253.01.T01:CDS | 25.0% |
| ! | CATGAAAGTGAAGTTAATTT+AGG | - | Chr2:81477755-81477774 | MsG0280011253.01.T01:CDS | 25.0% |
| ! | GAATTCATCATGAAATTGAA+AGG | + | Chr2:81477684-81477703 | None:intergenic | 25.0% |
| ! | GTTAATTTAGGAGAAGATAT+TGG | - | Chr2:81477767-81477786 | MsG0280011253.01.T01:CDS | 25.0% |
| !! | TGAAAAAAGTGCATCTAAAT+AGG | + | Chr2:81478161-81478180 | None:intergenic | 25.0% |
| !!! | AATTTTAGTGAACTTTGGTT+TGG | - | Chr2:81477571-81477590 | MsG0280011253.01.T01:CDS | 25.0% |
| !!! | TTAACAAAGCAAGTTTTGAA+TGG | + | Chr2:81478008-81478027 | None:intergenic | 25.0% |
| AAAACTTACAGACTGAGAAT+CGG | - | Chr2:81478604-81478623 | MsG0280011253.01.T01:CDS | 30.0% | |
| AAATGATTCATGTGTTTCTC+AGG | - | Chr2:81477731-81477750 | MsG0280011253.01.T01:CDS | 30.0% | |
| AACAGGAGATAATTCAACTT+AGG | - | Chr2:81478427-81478446 | MsG0280011253.01.T01:CDS | 30.0% | |
| AAGAAGATAGCAATTCTACA+TGG | - | Chr2:81479441-81479460 | MsG0280011253.01.T01:intron | 30.0% | |
| ACACAATAAAACAGTTGCAA+AGG | - | Chr2:81479109-81479128 | MsG0280011253.01.T01:intron | 30.0% | |
| ATGGTAGAACTTCATTTGAT+AGG | - | Chr2:81479486-81479505 | MsG0280011253.01.T01:CDS | 30.0% | |
| CATGTTTCTTCCTGTTATAT+AGG | + | Chr2:81478216-81478235 | None:intergenic | 30.0% | |
| CTTGAATATGCTGATACTAA+TGG | - | Chr2:81479185-81479204 | MsG0280011253.01.T01:intron | 30.0% | |
| GATAATTCAACTTAGGAACA+TGG | - | Chr2:81478434-81478453 | MsG0280011253.01.T01:CDS | 30.0% | |
| TATAGAACCAGTCTCAAATT+TGG | - | Chr2:81477954-81477973 | MsG0280011253.01.T01:CDS | 30.0% | |
| TGATAAGAATGACTATGAAC+AGG | - | Chr2:81478410-81478429 | MsG0280011253.01.T01:CDS | 30.0% | |
| TGTTCATAGTCATTCTTATC+AGG | + | Chr2:81478411-81478430 | None:intergenic | 30.0% | |
| ! | AAGAATTAGTTTACATGCGT+TGG | - | Chr2:81479042-81479061 | MsG0280011253.01.T01:intron | 30.0% |
| ! | AGGAGATATTCAAGTTTAAG+TGG | - | Chr2:81479506-81479525 | MsG0280011253.01.T01:CDS | 30.0% |
| ! | CAAAACTTGCTTTGTTAAAC+TGG | - | Chr2:81478010-81478029 | MsG0280011253.01.T01:CDS | 30.0% |
| ! | TATTCAAGTTTAAGTGGAGA+AGG | - | Chr2:81479512-81479531 | MsG0280011253.01.T01:CDS | 30.0% |
| !! | AAGCCAATTTTAGTGAACTT+TGG | - | Chr2:81477566-81477585 | MsG0280011253.01.T01:CDS | 30.0% |
| !! | ACAAATTTTTCAGCAAGCTT+AGG | - | Chr2:81479345-81479364 | MsG0280011253.01.T01:CDS | 30.0% |
| !! | ACAACAACTGGATTTGTTAT+CGG | - | Chr2:81477895-81477914 | MsG0280011253.01.T01:CDS | 30.0% |
| !! | TTTGCAACTGTTTTATTGTG+TGG | + | Chr2:81479110-81479129 | None:intergenic | 30.0% |
| AAGCAGAACCTTTGTATTCT+TGG | + | Chr2:81478788-81478807 | None:intergenic | 35.0% | |
| AAGCTTAGGAGAATGATACA+AGG | - | Chr2:81479359-81479378 | MsG0280011253.01.T01:CDS | 35.0% | |
| AAGTGCATCTAAATAGGAGA+AGG | + | Chr2:81478155-81478174 | None:intergenic | 35.0% | |
| ACTACATTCTGATCGATGTT+CGG | - | Chr2:81479013-81479032 | MsG0280011253.01.T01:intron | 35.0% | |
| AGAGCAAGAAACAGTTGTAA+TGG | - | Chr2:81478521-81478540 | MsG0280011253.01.T01:CDS | 35.0% | |
| AGTAATAGAAGAAGCTTGTG+AGG | + | Chr2:81479252-81479271 | None:intergenic | 35.0% | |
| ATGAAGAAGAAGGAAGAGAA+GGG | - | Chr2:81477539-81477558 | MsG0280011253.01.T01:CDS | 35.0% | |
| CTTCTGCATATTCTCCAAAT+CGG | + | Chr2:81479570-81479589 | None:intergenic | 35.0% | |
| CTTGTTTACGATATGAGTTG+CGG | - | Chr2:81479072-81479091 | MsG0280011253.01.T01:intron | 35.0% | |
| GAATCGGAGATTAAAAGAAC+AGG | - | Chr2:81478620-81478639 | MsG0280011253.01.T01:CDS | 35.0% | |
| GTGTCTTAGAAAAGAAAACG+AGG | - | Chr2:81478968-81478987 | MsG0280011253.01.T01:intron | 35.0% | |
| TAAATAGGAGAAGGTCTGAA+TGG | + | Chr2:81478146-81478165 | None:intergenic | 35.0% | |
| TACTTTCAACACTGTTTCAG+AGG | - | Chr2:81477802-81477821 | MsG0280011253.01.T01:CDS | 35.0% | |
| TAGGAGAATGATACAAGGAA+AGG | - | Chr2:81479364-81479383 | MsG0280011253.01.T01:intron | 35.0% | |
| TATGCCTAAAAAACCAGAGA+AGG | + | Chr2:81479540-81479559 | None:intergenic | 35.0% | |
| TGAATTTGATGAGCTCGTTA+AGG | - | Chr2:81478323-81478342 | MsG0280011253.01.T01:CDS | 35.0% | |
| TTAACGAGCTCATCAAATTC+AGG | + | Chr2:81478324-81478343 | None:intergenic | 35.0% | |
| TTATGACTTAGCTCGAAGAT+TGG | - | Chr2:81478902-81478921 | MsG0280011253.01.T01:intron | 35.0% | |
| TTCAGTTGCAGTGAACAAAA+GGG | - | Chr2:81478276-81478295 | MsG0280011253.01.T01:CDS | 35.0% | |
| TTGCAAGACCAAGAATACAA+AGG | - | Chr2:81478777-81478796 | MsG0280011253.01.T01:CDS | 35.0% | |
| TTTCAGTTGCAGTGAACAAA+AGG | - | Chr2:81478275-81478294 | MsG0280011253.01.T01:CDS | 35.0% | |
| ! | ACCAGTCTCAAATTTGGTTT+CGG | - | Chr2:81477960-81477979 | MsG0280011253.01.T01:CDS | 35.0% |
| ! | GCTTGCTGAAAAATTTGTTC+TGG | + | Chr2:81479343-81479362 | None:intergenic | 35.0% |
| ! | TTTTGTTCACTGCAACTGAA+AGG | + | Chr2:81478276-81478295 | None:intergenic | 35.0% |
| !! | GAAAAATTTGTTCTGGCTTG+TGG | + | Chr2:81479336-81479355 | None:intergenic | 35.0% |
| !! | TGGATTTGTTATCGGTGAAT+TGG | - | Chr2:81477903-81477922 | MsG0280011253.01.T01:CDS | 35.0% |
| !! | TGTTATCGGTGAATTGGTTT+TGG | - | Chr2:81477909-81477928 | MsG0280011253.01.T01:CDS | 35.0% |
| !! | TTCTAAGACACTCACTTTCT+CGG | + | Chr2:81478959-81478978 | None:intergenic | 35.0% |
| !!! | CAAAGCAAGTTTTGAATGGA+AGG | + | Chr2:81478004-81478023 | None:intergenic | 35.0% |
| AATACATCAACCGGAGTTGA+TGG | - | Chr2:81479467-81479486 | MsG0280011253.01.T01:CDS | 40.0% | |
| AATCACAGGAATCATTCCCA+CGG | - | Chr2:81477637-81477656 | MsG0280011253.01.T01:CDS | 40.0% | |
| ACATGGCCAAATACATCAAC+CGG | - | Chr2:81479458-81479477 | MsG0280011253.01.T01:intron | 40.0% | |
| AGGAGTTGAGGTAACTTTCA+TGG | - | Chr2:81478102-81478121 | MsG0280011253.01.T01:CDS | 40.0% | |
| AGGCACAGAGGTTAAAAGTA+GGG | - | Chr2:81478364-81478383 | MsG0280011253.01.T01:CDS | 40.0% | |
| AGGCATAGAGAAATCCGATT+TGG | - | Chr2:81479553-81479572 | MsG0280011253.01.T01:CDS | 40.0% | |
| ATGCTGATACTAATGGAGCA+GGG | - | Chr2:81479192-81479211 | MsG0280011253.01.T01:intron | 40.0% | |
| ATTTGATGAGCTCGTTAAGG+AGG | - | Chr2:81478326-81478345 | MsG0280011253.01.T01:CDS | 40.0% | |
| GATGAAGAAGAAGGAAGAGA+AGG | - | Chr2:81477538-81477557 | MsG0280011253.01.T01:CDS | 40.0% | |
| GGTGAAGATGTTCAATCTGA+AGG | - | Chr2:81478578-81478597 | MsG0280011253.01.T01:CDS | 40.0% | |
| GGTTAGATTGCTTCAAGACA+AGG | - | Chr2:81478455-81478474 | MsG0280011253.01.T01:CDS | 40.0% | |
| TATGCTGATACTAATGGAGC+AGG | - | Chr2:81479191-81479210 | MsG0280011253.01.T01:intron | 40.0% | |
| TGAAGTTCTACCATCAACTC+CGG | + | Chr2:81479480-81479499 | None:intergenic | 40.0% | |
| TGGGAATGATTCCTGTGATT+CGG | + | Chr2:81477637-81477656 | None:intergenic | 40.0% | |
| ! | AATTTTCATTCCTCGATCCG+CGG | + | Chr2:81478242-81478261 | None:intergenic | 40.0% |
| ! | ACCGAAACCAAATTTGAGAC+TGG | + | Chr2:81477964-81477983 | None:intergenic | 40.0% |
| ! | AGTCTGAAGTAGAAGAGTTG+AGG | - | Chr2:81478850-81478869 | MsG0280011253.01.T01:CDS | 40.0% |
| ! | GGCTTGTTTGATACAACAAC+TGG | - | Chr2:81477883-81477902 | MsG0280011253.01.T01:CDS | 40.0% |
| ! | TCAACTCCGGTTGATGTATT+TGG | + | Chr2:81479467-81479486 | None:intergenic | 40.0% |
| ! | TCTGAATGGTGGAATTCAGT+TGG | + | Chr2:81478132-81478151 | None:intergenic | 40.0% |
| ! | TTGGCTTTCTTCTCAGAAGA+GGG | + | Chr2:81479155-81479174 | None:intergenic | 40.0% |
| !! | AGTGAACTTTGGTTTGGCTT+TGG | - | Chr2:81477577-81477596 | MsG0280011253.01.T01:CDS | 40.0% |
| !! | GCAACTGTTTTATTGTGTGG+CGG | + | Chr2:81479107-81479126 | None:intergenic | 40.0% |
| !! | GCTTCTTCTATTACTGACTC+TGG | - | Chr2:81479257-81479276 | MsG0280011253.01.T01:intron | 40.0% |
| !! | GTATTCTTGGTCTTGCAACT+TGG | + | Chr2:81478775-81478794 | None:intergenic | 40.0% |
| !! | TTTGGCTTTCTTCTCAGAAG+AGG | + | Chr2:81479156-81479175 | None:intergenic | 40.0% |
| !!! | GGTTCCTTCTCTGGTTTTTT+AGG | - | Chr2:81479533-81479552 | MsG0280011253.01.T01:CDS | 40.0% |
| AGACAAGGAACAGAATCTCG+AGG | - | Chr2:81478470-81478489 | MsG0280011253.01.T01:CDS | 45.0% | |
| ATAGGAGAAGGTCTGAATGG+TGG | + | Chr2:81478143-81478162 | None:intergenic | 45.0% | |
| ATCACAGGAATCATTCCCAC+GGG | - | Chr2:81477638-81477657 | MsG0280011253.01.T01:CDS | 45.0% | |
| GAGGCACAGAGGTTAAAAGT+AGG | - | Chr2:81478363-81478382 | MsG0280011253.01.T01:CDS | 45.0% | |
| GCGTGAAGCCGAACAAAATA+AGG | - | Chr2:81478719-81478738 | MsG0280011253.01.T01:CDS | 45.0% | |
| TCATCGTCGTCATCATAGTC+AGG | - | Chr2:81479403-81479422 | MsG0280011253.01.T01:intron | 45.0% | |
| TGGCTTTCTTCTCAGAAGAG+GGG | + | Chr2:81479154-81479173 | None:intergenic | 45.0% | |
| ! | ATTTTCATTCCTCGATCCGC+GGG | + | Chr2:81478241-81478260 | None:intergenic | 45.0% |
| ! | CTGGCTTGTGGTATTAGTTC+TGG | + | Chr2:81479324-81479343 | None:intergenic | 45.0% |
| ! | GAATGATTCCTGTGATTCGG+AGG | + | Chr2:81477634-81477653 | None:intergenic | 45.0% |
| ! | GTTCAGTTGCTTGAGTACTG+TGG | - | Chr2:81478492-81478511 | MsG0280011253.01.T01:CDS | 45.0% |
| !!! | GCTTTGGCTCTTTCTTTTGC+TGG | - | Chr2:81477593-81477612 | MsG0280011253.01.T01:CDS | 45.0% |
| !!! | TCGGTGAATTGGTTTTGGAC+TGG | - | Chr2:81477914-81477933 | MsG0280011253.01.T01:CDS | 45.0% |
| AGCCAGCACCTTTGCATGAT+CGG | + | Chr2:81478649-81478668 | None:intergenic | 50.0% | |
| AGTGGAGAAGGTTCCTTCTC+TGG | - | Chr2:81479524-81479543 | MsG0280011253.01.T01:CDS | 50.0% | |
| GGAGGTAGAGTTCGAAGTAG+AGG | - | Chr2:81478344-81478363 | MsG0280011253.01.T01:CDS | 50.0% | |
| ! | AGTTCGAAGTAGAGGCACAG+AGG | - | Chr2:81478352-81478371 | MsG0280011253.01.T01:CDS | 50.0% |
| ! | GACGACGATGATGATGACGA+TGG | + | Chr2:81479394-81479413 | None:intergenic | 50.0% |
| AATACCCGAAGAACGACCCG+TGG | + | Chr2:81477657-81477676 | None:intergenic | 55.0% | |
| ACAGGCTGCCGATCATGCAA+AGG | - | Chr2:81478638-81478657 | MsG0280011253.01.T01:CDS | 55.0% | |
| ATACCCGAAGAACGACCCGT+GGG | + | Chr2:81477656-81477675 | None:intergenic | 55.0% | |
| ATTCCCACGGGTCGTTCTTC+GGG | - | Chr2:81477650-81477669 | MsG0280011253.01.T01:CDS | 55.0% | |
| CAGGAAGAAACATGCACCCG+CGG | - | Chr2:81478222-81478241 | MsG0280011253.01.T01:CDS | 55.0% | |
| CATTCCCACGGGTCGTTCTT+CGG | - | Chr2:81477649-81477668 | MsG0280011253.01.T01:CDS | 55.0% | |
| ! | TGCCGATCATGCAAAGGTGC+TGG | - | Chr2:81478644-81478663 | MsG0280011253.01.T01:CDS | 55.0% |
| AAACATGCACCCGCGGATCG+AGG | - | Chr2:81478229-81478248 | MsG0280011253.01.T01:CDS | 60.0% | |
| TACTCGCGCCTCCGAATCAC+AGG | - | Chr2:81477623-81477642 | MsG0280011253.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 81477536 | 81479595 | 81477536 | ID=MsG0280011253.01;Name=MsG0280011253.01 |
| Chr2 | mRNA | 81477536 | 81479595 | 81477536 | ID=MsG0280011253.01.T01;Parent=MsG0280011253.01;Name=MsG0280011253.01.T01;_AED=0.09;_eAED=0.10;_QI=0|0|0|1|1|1|3|0|525 |
| Chr2 | exon | 81479460 | 81479595 | 81479460 | ID=MsG0280011253.01.T01:exon:20283;Parent=MsG0280011253.01.T01 |
| Chr2 | exon | 81479308 | 81479378 | 81479308 | ID=MsG0280011253.01.T01:exon:20282;Parent=MsG0280011253.01.T01 |
| Chr2 | exon | 81477536 | 81478906 | 81477536 | ID=MsG0280011253.01.T01:exon:20281;Parent=MsG0280011253.01.T01 |
| Chr2 | CDS | 81479460 | 81479595 | 81479460 | ID=MsG0280011253.01.T01:cds;Parent=MsG0280011253.01.T01 |
| Chr2 | CDS | 81479308 | 81479378 | 81479308 | ID=MsG0280011253.01.T01:cds;Parent=MsG0280011253.01.T01 |
| Chr2 | CDS | 81477536 | 81478906 | 81477536 | ID=MsG0280011253.01.T01:cds;Parent=MsG0280011253.01.T01 |
| Gene Sequence |
| Protein sequence |
