AlfalfaGEDB | MsG0480020886.01

M. sativa cultivar ZhongmuNo.1 / MsG0480020886.01

KEGG: K22755
GO: -
PFAM: PF09743

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020886.01.T01	XP_039688999.1	90.354	819	9	2	1	749	1	819	0	1469

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020886.01.T01	Q9LX73	56.044	819	270	5	1	748	1	800	0	859

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020886.01.T01	A0A396I7Z3	90.354	819	9	2	1	749	1	819	0.0	1469

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047869.01	MsG0480020886.01	0.808192	3.495309e-50	1.985708e-47
MsG0080047959.01	MsG0480020886.01	0.805036	1.620421e-49	8.484650e-47
MsG0080048035.01	MsG0480020886.01	0.808428	3.112691e-50	1.779325e-47
MsG0080048874.01	MsG0480020886.01	0.803017	4.260509e-49	2.117884e-46
MsG0080048915.01	MsG0480020886.01	0.824250	8.934533e-54	7.871072e-51
MsG0080048964.01	MsG0480020886.01	0.845220	4.651172e-59	7.697145e-56
MsG0080049014.01	MsG0480020886.01	0.815165	1.063306e-51	7.275749e-49
MsG0080049032.01	MsG0480020886.01	0.808238	3.417297e-50	1.943726e-47
MsG0180000065.01	MsG0480020886.01	0.826748	2.288276e-54	2.164977e-51
MsG0180000195.01	MsG0480020886.01	0.810814	9.557047e-51	5.819107e-48

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PPI

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Gene1	Gene2	Type
MsG0480020886.01	MsG0780041368.01	PPI
MsG0780041368.01	MsG0480020886.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020886.01.T01	MTR_4g062090	86.740	822	19	6	1	749	1	805	0.0	1390

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0480020886.01.T01	AT3G46220	56.700	806	269	5	1	748	1	784	865
MsG0480020886.01.T01	AT3G46220	56.044	819	270	5	1	748	1	800	859
MsG0480020886.01.T01	AT3G46220	55.060	830	269	6	1	748	1	808	851
MsG0480020886.01.T01	AT3G46220	55.654	787	253	5	1	713	1	765	820

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Find 148 sgRNAs with CRISPR-Local

Find 444 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGGTGAAAGGAAGGC+TGG	0.472868	4:-50094123	MsG0480020886.01.T01:intron
AAAGAACGGAGTTGACGTGC+AGG	0.578778	4:-50091143	MsG0480020886.01.T01:CDS
AAAGGCCTAAGAATCGTTTC+GGG	0.485000	4:+50091726	None:intergenic
AAAGTAAGGCCTACAATAAT+CGG	0.406180	4:-50091696	MsG0480020886.01.T01:CDS
AAATGGCCCTTCCAGGAGCT+TGG	0.485022	4:+50089317	None:intergenic
AAATTATTACGGAGTCTTAC+TGG	0.262997	4:-50094368	MsG0480020886.01.T01:CDS
AACGAAATAGACTCGGACTT+TGG	0.407948	4:+50091115	None:intergenic
AACTGCTACTGTGACTCTAT+TGG	0.422613	4:-50088471	MsG0480020886.01.T01:CDS
AAGAGCTCCGGGAAAACTCT+TGG	0.491553	4:+50090736	None:intergenic
AAGATCAATCGATCTCAACA+TGG	0.659716	4:-50095359	MsG0480020886.01.T01:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACTCACTATAGTTCCA+AGG	+	Chr4:50089063-50089082	None:intergenic	30.0%
AAAGTAAGGCCTACAATAAT+CGG	-	Chr4:50091590-50091609	MsG0480020886.01.T01:intron	30.0%
AAATTATTACGGAGTCTTAC+TGG	-	Chr4:50088918-50088937	MsG0480020886.01.T01:intron	30.0%
AAATTGGATTGTGCAAACTT+AGG	+	Chr4:50089945-50089964	None:intergenic	30.0%
AACTGTGATTTCATATGTGA+TGG	-	Chr4:50089135-50089154	MsG0480020886.01.T01:intron	30.0%
AAGATAAAGAAACCAAAAGC+TGG	+	Chr4:50090874-50090893	None:intergenic	30.0%
AATATCTTTGGGCATCTAAA+GGG	-	Chr4:50094654-50094673	MsG0480020886.01.T01:intron	30.0%
AATTATTACGGAGTCTTACT+GGG	-	Chr4:50088919-50088938	MsG0480020886.01.T01:intron	30.0%
ACTGCCATTATAAGTTTGAA+AGG	-	Chr4:50089712-50089731	MsG0480020886.01.T01:intron	30.0%
ACTTCCACAAAATCTAAGAA+AGG	-	Chr4:50091286-50091305	MsG0480020886.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	50087742	50095566	50087742	ID=MsG0480020886.01;Name=MsG0480020886.01
Chr4	mRNA	50087742	50095566	50087742	ID=MsG0480020886.01.T01;Parent=MsG0480020886.01;Name=MsG0480020886.01.T01;_AED=0.43;_eAED=0.43;_QI=204\|0.87\|0.94\|1\|0.93\|0.88\|17\|145\|749
Chr4	exon	50087742	50087988	50087742	ID=MsG0480020886.01.T01:exon:886;Parent=MsG0480020886.01.T01
Chr4	exon	50088445	50088537	50088445	ID=MsG0480020886.01.T01:exon:885;Parent=MsG0480020886.01.T01
Chr4	exon	50089294	50089356	50089294	ID=MsG0480020886.01.T01:exon:884;Parent=MsG0480020886.01.T01
Chr4	exon	50089442	50089519	50089442	ID=MsG0480020886.01.T01:exon:883;Parent=MsG0480020886.01.T01
Chr4	exon	50090297	50090360	50090297	ID=MsG0480020886.01.T01:exon:882;Parent=MsG0480020886.01.T01
Chr4	exon	50090452	50090498	50090452	ID=MsG0480020886.01.T01:exon:881;Parent=MsG0480020886.01.T01
Chr4	exon	50090694	50090759	50090694	ID=MsG0480020886.01.T01:exon:880;Parent=MsG0480020886.01.T01
Chr4	exon	50091090	50091182	50091090	ID=MsG0480020886.01.T01:exon:879;Parent=MsG0480020886.01.T01
Chr4	exon	50091265	50091333	50091265	ID=MsG0480020886.01.T01:exon:878;Parent=MsG0480020886.01.T01
Chr4	exon	50091414	50091479	50091414	ID=MsG0480020886.01.T01:exon:877;Parent=MsG0480020886.01.T01
Chr4	exon	50091605	50091759	50091605	ID=MsG0480020886.01.T01:exon:876;Parent=MsG0480020886.01.T01
Chr4	exon	50091842	50092283	50091842	ID=MsG0480020886.01.T01:exon:875;Parent=MsG0480020886.01.T01
Chr4	exon	50093003	50093096	50093003	ID=MsG0480020886.01.T01:exon:874;Parent=MsG0480020886.01.T01
Chr4	exon	50093238	50093336	50093238	ID=MsG0480020886.01.T01:exon:873;Parent=MsG0480020886.01.T01
Chr4	exon	50093906	50094138	50093906	ID=MsG0480020886.01.T01:exon:872;Parent=MsG0480020886.01.T01
Chr4	exon	50094236	50094547	50094236	ID=MsG0480020886.01.T01:exon:871;Parent=MsG0480020886.01.T01
Chr4	exon	50095189	50095566	50095189	ID=MsG0480020886.01.T01:exon:870;Parent=MsG0480020886.01.T01
Chr4	five_prime_UTR	50095363	50095566	50095363	ID=MsG0480020886.01.T01:five_prime_utr;Parent=MsG0480020886.01.T01
Chr4	CDS	50095189	50095362	50095189	ID=MsG0480020886.01.T01:cds;Parent=MsG0480020886.01.T01
Chr4	CDS	50094236	50094547	50094236	ID=MsG0480020886.01.T01:cds;Parent=MsG0480020886.01.T01
Chr4	CDS	50093906	50094138	50093906	ID=MsG0480020886.01.T01:cds;Parent=MsG0480020886.01.T01
Chr4	CDS	50093238	50093336	50093238	ID=MsG0480020886.01.T01:cds;Parent=MsG0480020886.01.T01
Chr4	CDS	50093003	50093096	50093003	ID=MsG0480020886.01.T01:cds;Parent=MsG0480020886.01.T01
Chr4	CDS	50091842	50092283	50091842	ID=MsG0480020886.01.T01:cds;Parent=MsG0480020886.01.T01
Chr4	CDS	50091605	50091759	50091605	ID=MsG0480020886.01.T01:cds;Parent=MsG0480020886.01.T01
Chr4	CDS	50091414	50091479	50091414	ID=MsG0480020886.01.T01:cds;Parent=MsG0480020886.01.T01
Chr4	CDS	50091265	50091333	50091265	ID=MsG0480020886.01.T01:cds;Parent=MsG0480020886.01.T01
Chr4	CDS	50091090	50091182	50091090	ID=MsG0480020886.01.T01:cds;Parent=MsG0480020886.01.T01
Chr4	CDS	50090694	50090759	50090694	ID=MsG0480020886.01.T01:cds;Parent=MsG0480020886.01.T01
Chr4	CDS	50090452	50090498	50090452	ID=MsG0480020886.01.T01:cds;Parent=MsG0480020886.01.T01
Chr4	CDS	50090297	50090360	50090297	ID=MsG0480020886.01.T01:cds;Parent=MsG0480020886.01.T01
Chr4	CDS	50089442	50089519	50089442	ID=MsG0480020886.01.T01:cds;Parent=MsG0480020886.01.T01
Chr4	CDS	50089294	50089356	50089294	ID=MsG0480020886.01.T01:cds;Parent=MsG0480020886.01.T01
Chr4	CDS	50088445	50088537	50088445	ID=MsG0480020886.01.T01:cds;Parent=MsG0480020886.01.T01
Chr4	CDS	50087887	50087988	50087887	ID=MsG0480020886.01.T01:cds;Parent=MsG0480020886.01.T01
Chr4	three_prime_UTR	50087742	50087886	50087742	ID=MsG0480020886.01.T01:three_prime_utr;Parent=MsG0480020886.01.T01

Gene Sequence

>MsG0480020886.01.T01

ATGGACGACGAATTGCTCGAATTGCAGCGACAATTTGAGTTCGCTCAACAAGCAAAATCCAGTATTCGATTATCCGATCGAAACGTCGTTGAATTAGTTCAAAAATTGCAACAACTTCAATTCATTGATTTTGAGCTTCTTCATACTGCTTCTGGCAAAGAATACATCACTCTCGATCAACTGAGAAATGAGATGGTTGCTGAGGTGAAGAAGTTAGGGCGAATTTCTGTGATCGATCTTGCTGATGTTACTGGAGTTGACTTGTACTATGTTGAGAAGTTGGCTCAGAGTATTGTAACGGATCACGCAGAATTGATGTTGAATCAAGGGGAAATTATTACGGAGTCTTACTGGGATTCCATTGCTGAAGAGATTAATGAGAGGCTTCAAGAATGTAGTCAGATTGCTTTGACGGAACTTGCGGCGCAGTTGAATGTTGGTTTGGATTTGATTGCGTCTATTTTGGAGCCGCGCCTTGGAACTATAGTGAAAGGAAGGCTGGAAGGTGGACAATTGTATACTCCTGCTTATGTTGCTCGTGTTAGTGCCATGGTTCGAGGTGCTGCAAGGGGTATTACGGTTCCGACAAACTTGACAGTGTTATGGAGCTCATTGCAGAATTTACTACAAGAAATGGATGGAGCTAGTGGTGTGGCTGTTGATGGATCTTTCTTCCAGTCTTTGTTTAATGGACTTGTGAAGGGAGGCGAGATTTTAGGATATCCTGAAGGCAAACCTCTTGTTACAACATTTGTTCACCCATCAATGATTGAGATGCTAGATGCTGCTACTGAGGATGCTCTAGAACGTGGAAGCTGGAGTGATTCTCTTTCCTTATTGCCCTCATCTTTTACACCTCAAGATGCATCTAAAATGTTGTCCCTCTGTCAATCTGTACAATTGGCACTTAAGGACATTTGTGATCGCATGGTGAAAGAATTAGAGACATTAGCTGTTTCAAGGTCTTTAGGCACTGCAAAACCTGGTGATTTACCAATTGCCAATGAAGTAAAAGCAGGGTATGATTCAAGCAGGTTGAGTGAGTCCAGTGATATGGCGAGTGATGGTGGTTCAAACAAGCATGCTGATAAAGGGCCAAAGAAGAAAAAGGGGAAAGCCACTGGAAATACATTAGCAAATCCATCTGAAAGTGGTCCTGATAACCAAGAACATACTTCCACAAAATCTAAGAAAGGCCAGAGAAGGGGTAAGGATACATCTTCACAAACATCAGATTCAAAGCCAGGTTCTAGGAAAGAATCACTTAAAATGAAAGAGGATAATCTCAGTAATCCCTCAGAAGAATGGATCATGGAGAAGATTACAGCATTGATTCCTGATTTTGAAGAACAAGGTATTGATGATCCCGAAACGATTCTTAGGCCTTTGGCTAACAAAGTAAGGCCTACAATAATCGGTACTTGGATGGAGAAAAAGAAGGCATTGTTTAAAGACAATGCAGAAAGAATGAAACAATTGCTTGATAGTTTGCAAAAGAAACTTGATGAGTCTTTCTTAAACATGCAGCTGTATGAAAAAGCCTTAGAATTGTTTGAAGATGATCAATCAACTTCTGTTGTTTTGCATAGGCATTTACTAAGGACAGTAGCAGCTCCTATGGTTGATATGCTTCTTCATGACTTGGATGAGCACAACAAATTAAAGAACGGAGTTGACGTGCAGGAATCTCCAAAGTCCGAGTCTATTTCGTTTGGTCCTGGAGAAAGAGCTGCAATTTCCAAGAGTTTTCCCGGAGCTCTTGCAAATAAGGCTCTTGCTGTTGTAGAAGCATTGGAAGGAAAGAGTGTGGAAACATTCATGTCTGCATTCAGAAGCGTGACGGAAGAGAGTGGGTTGCCTTTGAAAAAGCTTGACAAGAAACTAGAAAGAACAATTTTACATTCATATCGGAAGGAATTGACGTCTCAAGTATCCGCTGAGACTGATCCTGTATCACTTCTACCAAAAGTTGTGTCTTTACTCTATGTCCAGGTTTACCATAAAGCTCTCCAAGCTCCTGGAAGGGCCATTTCTGTTGCTATTTCTCACTTGCAGGATAAGCTAGACGAGTCAGCATGCAAGACTTTAGCTGATTATCAAACTGCTACTGTGACTCTATTGGCATTATTATCAGCTGCTCCTGATGATGAAGACAGTTGTGCATCTGACAGAGTTCTGAGTACAAGAGAGCTTCTGGAGAGCAAAATGCCGGCTCTCAAAAGCTTGGTTTTGACTACCTCGCAGTCCTAA

Protein sequence

>MsG0480020886.01.T01

MDDELLELQRQFEFAQQAKSSIRLSDRNVVELVQKLQQLQFIDFELLHTASGKEYITLDQLRNEMVAEVKKLGRISVIDLADVTGVDLYYVEKLAQSIVTDHAELMLNQGEIITESYWDSIAEEINERLQECSQIALTELAAQLNVGLDLIASILEPRLGTIVKGRLEGGQLYTPAYVARVSAMVRGAARGITVPTNLTVLWSSLQNLLQEMDGASGVAVDGSFFQSLFNGLVKGGEILGYPEGKPLVTTFVHPSMIEMLDAATEDALERGSWSDSLSLLPSSFTPQDASKMLSLCQSVQLALKDICDRMVKELETLAVSRSLGTAKPGDLPIANEVKAGYDSSRLSESSDMASDGGSNKHADKGPKKKKGKATGNTLANPSESGPDNQEHTSTKSKKGQRRGKDTSSQTSDSKPGSRKESLKMKEDNLSNPSEEWIMEKITALIPDFEEQGIDDPETILRPLANKVRPTIIGTWMEKKKALFKDNAERMKQLLDSLQKKLDESFLNMQLYEKALELFEDDQSTSVVLHRHLLRTVAAPMVDMLLHDLDEHNKLKNGVDVQESPKSESISFGPGERAAISKSFPGALANKALAVVEALEGKSVETFMSAFRSVTEESGLPLKKLDKKLERTILHSYRKELTSQVSAETDPVSLLPKVVSLLYVQVYHKALQAPGRAISVAISHLQDKLDESACKTLADYQTATVTLLALLSAAPDDEDSCASDRVLSTRELLESKMPALKSLVLTTSQS*