AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016581.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016581.01.T01 MTR_3g092150 98.367 245 4 0 1 245 1 245 0.0 496
MsG0380016581.01.T01 MTR_8g026960 43.750 208 109 4 42 245 38 241 5.18e-48 159
MsG0380016581.01.T01 MTR_6g007647 45.185 135 63 2 7 130 25 159 4.02e-30 114
MsG0380016581.01.T01 MTR_6g007647 57.447 94 40 0 37 130 32 125 4.42e-30 113
MsG0380016581.01.T01 MTR_4g107650 56.122 98 43 0 37 134 94 191 4.86e-29 112
MsG0380016581.01.T01 MTR_6g011610 56.383 94 41 0 37 130 95 188 8.59e-29 110
MsG0380016581.01.T01 MTR_6g011610 56.383 94 41 0 37 130 76 169 9.65e-29 109
MsG0380016581.01.T01 MTR_8g468210 54.255 94 43 0 37 130 76 169 4.62e-28 108
MsG0380016581.01.T01 MTR_1g061660 49.533 107 46 2 37 142 58 157 1.39e-26 103
MsG0380016581.01.T01 MTR_5g038280 55.435 92 41 0 39 130 88 179 2.09e-26 104
MsG0380016581.01.T01 MTR_8g089895 55.435 92 41 0 39 130 55 146 2.56e-26 104
MsG0380016581.01.T01 MTR_5g039000 54.255 94 43 0 37 130 76 169 3.16e-26 103
MsG0380016581.01.T01 MTR_3g086790 51.064 94 46 0 37 130 59 152 6.86e-26 103
MsG0380016581.01.T01 MTR_7g103340 40.690 145 58 4 37 160 62 199 3.46e-25 99.8
MsG0380016581.01.T01 MTR_8g469430 54.348 92 42 0 39 130 90 181 5.39e-25 100
MsG0380016581.01.T01 MTR_3g080100 49.474 95 48 0 36 130 18 112 6.12e-25 98.6
MsG0380016581.01.T01 MTR_3g080100 49.474 95 48 0 36 130 57 151 9.88e-25 99.0
MsG0380016581.01.T01 MTR_7g010020 47.826 92 48 0 39 130 81 172 3.32e-21 89.7
MsG0380016581.01.T01 MTR_5g019680 47.368 114 46 2 31 130 39 152 5.89e-21 87.8
MsG0380016581.01.T01 MTR_5g019650 52.577 97 38 2 31 120 39 134 1.83e-19 84.3
MsG0380016581.01.T01 MTR_4g100550 44.211 95 46 1 39 133 121 208 9.91e-14 69.3
MsG0380016581.01.T01 MTR_7g093430 41.584 101 52 1 33 133 155 248 9.61e-13 66.6
MsG0380016581.01.T01 MTR_4g126900 42.857 84 48 0 41 124 91 174 1.82e-12 65.1
MsG0380016581.01.T01 MTR_4g097600 43.158 95 47 1 39 133 128 215 2.96e-12 65.1
MsG0380016581.01.T01 MTR_5g014890 43.750 96 53 1 39 133 124 219 5.26e-12 64.3
MsG0380016581.01.T01 MTR_1g017090 43.158 95 47 1 39 133 131 218 8.77e-12 63.9
MsG0380016581.01.T01 MTR_1g054285 39.423 104 56 1 33 136 149 245 1.44e-11 63.5
MsG0380016581.01.T01 MTR_3g103590 45.333 75 41 0 36 110 143 217 1.62e-11 63.2
MsG0380016581.01.T01 MTR_8g006705 42.105 95 48 1 39 133 147 234 2.07e-11 63.2
MsG0380016581.01.T01 MTR_7g027265 31.250 144 73 4 35 177 17 135 2.40e-11 60.5
MsG0380016581.01.T01 MTR_2g061030 40.000 95 50 1 39 133 201 288 7.56e-11 61.6
MsG0380016581.01.T01 MTR_5g013010 41.053 95 49 1 39 133 137 224 8.97e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016581.01.T01 AT2G46680 42.324 241 118 5 25 245 19 258 2.05e-45 152
MsG0380016581.01.T01 AT2G46680 43.162 234 114 5 30 245 24 256 2.20e-44 150
MsG0380016581.01.T01 AT3G61890 68.132 91 29 0 41 131 33 123 2.06e-38 134
MsG0380016581.01.T01 AT3G01470 43.382 136 77 0 37 172 67 202 1.17e-29 112
MsG0380016581.01.T01 AT2G22430 56.383 94 41 0 37 130 61 154 5.00e-29 111
MsG0380016581.01.T01 AT4G40060 52.041 98 47 0 37 134 58 155 2.19e-28 109
MsG0380016581.01.T01 AT1G69780 54.255 94 43 0 37 130 84 177 9.15e-28 107
MsG0380016581.01.T01 AT5G15150 53.191 94 44 0 37 130 114 207 3.57e-26 103
MsG0380016581.01.T01 AT2G18550 50.943 106 45 1 39 137 62 167 8.46e-26 100
MsG0380016581.01.T01 AT5G65310 51.064 94 46 0 37 130 53 146 2.96e-25 101
MsG0380016581.01.T01 AT5G65310 51.064 94 46 0 37 130 71 164 3.79e-25 101
MsG0380016581.01.T01 AT4G36740 42.647 136 61 2 17 135 25 160 9.47e-25 98.2
MsG0380016581.01.T01 AT5G66700 51.000 100 42 1 39 131 72 171 1.35e-24 98.2
MsG0380016581.01.T01 AT4G36740 50.962 104 44 1 39 135 56 159 1.37e-24 97.8
MsG0380016581.01.T01 AT3G01220 48.936 94 48 0 37 130 86 179 9.13e-24 97.1
MsG0380016581.01.T01 AT5G03790 43.478 115 54 2 20 134 63 166 1.89e-23 95.1
MsG0380016581.01.T01 AT1G26960 42.969 128 65 2 11 130 36 163 1.74e-22 93.2
MsG0380016581.01.T01 AT5G03790 46.000 100 50 1 20 119 63 158 7.85e-22 89.7
MsG0380016581.01.T01 AT1G27045 40.299 134 74 2 9 138 35 166 4.63e-21 89.4
MsG0380016581.01.T01 AT1G27045 39.683 126 72 1 9 130 35 160 5.60e-20 85.9
MsG0380016581.01.T01 AT1G27045 45.361 97 53 0 34 130 21 117 6.12e-20 84.7
MsG0380016581.01.T01 AT1G27045 45.361 97 53 0 34 130 21 117 6.12e-20 84.7
MsG0380016581.01.T01 AT1G27045 45.361 97 53 0 34 130 13 109 8.34e-20 84.0
MsG0380016581.01.T01 AT2G36610 42.308 104 45 2 39 134 72 168 2.63e-19 82.8
MsG0380016581.01.T01 AT5G53980 39.604 101 57 1 29 129 6 102 1.44e-15 72.0
MsG0380016581.01.T01 AT2G44910 42.000 100 51 1 39 138 164 256 1.48e-12 66.6
MsG0380016581.01.T01 AT3G60390 42.000 100 51 1 39 138 163 255 3.56e-12 65.5
MsG0380016581.01.T01 AT2G22800 42.105 95 48 1 39 133 114 201 1.11e-11 63.5
MsG0380016581.01.T01 AT5G06710 41.837 98 50 1 33 130 185 275 1.39e-11 63.9
MsG0380016581.01.T01 AT4G16780 42.105 95 48 1 39 133 130 217 5.94e-11 61.6
MsG0380016581.01.T01 AT4G37790 41.053 95 49 1 39 133 127 214 8.44e-11 61.2
MsG0380016581.01.T01 AT2G01430 42.105 95 48 1 39 133 140 227 8.83e-11 60.8

Find 64 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGGTGTTTCCTTGAAAA+AGG 0.186239 3:-85345354 MsG0380016581.01.T01:three_prime_UTR
GGTTATTTGTATCACGTTAT+TGG 0.199319 3:+85346535 None:intergenic
TTCCTCCATCATATTATATA+TGG 0.262604 3:+85346388 None:intergenic
AATTCATTTGTTTAGAGATT+TGG 0.291509 3:-85345223 MsG0380016581.01.T01:three_prime_UTR
TTCTTCTATGTTGCAATGTT+TGG 0.317476 3:-85345371 MsG0380016581.01.T01:three_prime_UTR
ATTCCAAACTCAGTGTAAAA+AGG 0.320531 3:+85344915 None:intergenic
AGCCTAGACAAGTTGCTATA+TGG 0.329458 3:-85346154 MsG0380016581.01.T01:CDS
GCAAGTTGCATCTTCTTCCT+TGG 0.339735 3:+85346194 None:intergenic
AAGAACTTTATAATGTATAA+TGG 0.346691 3:-85344975 MsG0380016581.01.T01:three_prime_UTR
TGAGGGTTTGGAGGATAAAA+TGG 0.360194 3:-85345607 MsG0380016581.01.T01:CDS
AGCACAGAAGATGGTGGTTC+AGG 0.365057 3:-85345681 MsG0380016581.01.T01:CDS
GGTTCAGAAGCTAAGTTATA+TGG 0.367405 3:-85345745 MsG0380016581.01.T01:CDS
GAAGATGGTGGTTCAGGAAA+TGG 0.372815 3:-85345675 MsG0380016581.01.T01:CDS
GAAATGGATACAACAATTGC+AGG 0.379643 3:-85345659 MsG0380016581.01.T01:CDS
ATGCAACTTGCAAGAGATCT+TGG 0.385707 3:-85346182 MsG0380016581.01.T01:CDS
TTTAGAGATTTGGAAGAAGA+AGG 0.390617 3:-85345213 MsG0380016581.01.T01:three_prime_UTR
TTCTAAGTTTCAGTGCCTTA+AGG 0.396105 3:-85346048 MsG0380016581.01.T01:CDS
AAGACTCTTTCTCTTCCTTA+AGG 0.407960 3:+85346033 None:intergenic
TAAAGTTATAAAACTAGAAA+TGG 0.413285 3:+85345102 None:intergenic
CACGTTATTGGAACTTGTAA+AGG 0.438226 3:+85346547 None:intergenic
TGATGAACAGATAAGATCAT+TGG 0.455417 3:-85346249 MsG0380016581.01.T01:CDS
AAAATTCAAAACTTAGGCCT+TGG 0.467576 3:-85346411 MsG0380016581.01.T01:five_prime_UTR
GTTCAAAACATGCAAGTTCA+AGG 0.470409 3:-85345320 MsG0380016581.01.T01:three_prime_UTR
ATGCAATAGTTCTCAATGGT+TGG 0.475551 3:-85345421 MsG0380016581.01.T01:CDS
AATATTCATGAAGGGTTCAA+AGG 0.493550 3:-85346359 MsG0380016581.01.T01:CDS
ATCACACTGACACAAGCAAA+TGG 0.497713 3:+85345133 None:intergenic
GAAGAAGAGAATATTCATGA+AGG 0.503417 3:-85346368 MsG0380016581.01.T01:CDS
CACAAGCAAATGGATGGAAA+AGG 0.514463 3:+85345143 None:intergenic
CAGAATCAAAGTTGGAGCCA+AGG 0.518559 3:-85346211 MsG0380016581.01.T01:CDS
ATTTGAGTCAGAATCAAAGT+TGG 0.518777 3:-85346219 MsG0380016581.01.T01:CDS
AAAAGATTAAAATTTGGTGA+GGG 0.520087 3:+85346466 None:intergenic
AAGGAAAATAGCACAGAAGA+TGG 0.540540 3:-85345690 MsG0380016581.01.T01:CDS
GAAAGAGTCTTTGCAATCAG+AGG 0.541327 3:-85346021 MsG0380016581.01.T01:intron
CACTGACACAAGCAAATGGA+TGG 0.547485 3:+85345137 None:intergenic
AAGATTAAAATTTGGTGAGG+GGG 0.552758 3:+85346468 None:intergenic
AATCATGCAATAGTTCTCAA+TGG 0.553811 3:-85345425 MsG0380016581.01.T01:CDS
CTTGGCCATATATAATATGA+TGG 0.568051 3:-85346393 MsG0380016581.01.T01:exon
GATCATTGTAACATATGACT+TGG 0.568054 3:-85345056 MsG0380016581.01.T01:three_prime_UTR
AGAAGATAGAAAACAAGAGA+AGG 0.569555 3:-85346277 MsG0380016581.01.T01:CDS
AAACATCGCATGATGGAGGA+AGG 0.574577 3:-85345719 MsG0380016581.01.T01:CDS
AACCATATAGCAACTTGTCT+AGG 0.580258 3:+85346152 None:intergenic
CATCATATTATATATGGCCA+AGG 0.582674 3:+85346394 None:intergenic
AAAGATTAAAATTTGGTGAG+GGG 0.584079 3:+85346467 None:intergenic
AAGAAGAGAATATTCATGAA+GGG 0.590509 3:-85346367 MsG0380016581.01.T01:CDS
TTCAGAACAGAAGAGCAAGA+TGG 0.602218 3:-85346130 MsG0380016581.01.T01:CDS
CTAAACAAATGAATTAAGAG+AGG 0.605271 3:+85345231 None:intergenic
TGATGGAGGAAGGGAAGCTA+AGG 0.606332 3:-85345709 MsG0380016581.01.T01:CDS
TTATTGGAACTTGTAAAGGA+AGG 0.615756 3:+85346551 None:intergenic
TCAGAAGCTAAGTTATATGG+TGG 0.615960 3:-85345742 MsG0380016581.01.T01:CDS
ATGGTGGAAACATCGCATGA+TGG 0.617224 3:-85345726 MsG0380016581.01.T01:CDS
CATTGCAACATAGAAGAACA+TGG 0.626691 3:+85345376 None:intergenic
AACATCGCATGATGGAGGAA+GGG 0.628539 3:-85345718 MsG0380016581.01.T01:CDS
GTGGAAACATCGCATGATGG+AGG 0.645127 3:-85345723 MsG0380016581.01.T01:CDS
GGCCATATATAATATGATGG+AGG 0.645919 3:-85346390 MsG0380016581.01.T01:exon
GAGCAAGATGGAAATCAAAG+AGG 0.650346 3:-85346118 MsG0380016581.01.T01:CDS
GACTTGGACTCACATAACAT+AGG 0.662360 3:-85345040 MsG0380016581.01.T01:three_prime_UTR
GATTGATCTAACATACCACA+TGG 0.663576 3:+85345444 None:intergenic
GAAAATAGCACAGAAGATGG+TGG 0.663671 3:-85345687 MsG0380016581.01.T01:CDS
AAAATGAAAGAAGCACAACA+TGG 0.668449 3:-85345566 MsG0380016581.01.T01:CDS
ACAGAGAAAATTGAGGACAG+AGG 0.671559 3:-85345543 MsG0380016581.01.T01:CDS
AATGATCATACAAATAAACA+AGG 0.699783 3:+85345072 None:intergenic
GATCATACAAATAAACAAGG+TGG 0.701047 3:+85345075 None:intergenic
AACATGGACAGAGAAAATTG+AGG 0.710156 3:-85345550 MsG0380016581.01.T01:CDS
TGGTACAATGTTGATCCATG+TGG 0.723453 3:-85345459 MsG0380016581.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAACTTTATAATGTATAA+TGG - Chr3:85346517-85346536 MsG0380016581.01.T01:five_prime_UTR 15.0%
!! TAAAGTTATAAAACTAGAAA+TGG + Chr3:85346393-85346412 None:intergenic 15.0%
!! AATGATCATACAAATAAACA+AGG + Chr3:85346423-85346442 None:intergenic 20.0%
!! AATTCATTTGTTTAGAGATT+TGG - Chr3:85346269-85346288 MsG0380016581.01.T01:CDS 20.0%
!! ATTCCAAAAATTCAAAACTT+AGG - Chr3:85345075-85345094 MsG0380016581.01.T01:three_prime_UTR 20.0%
!! TTAGGAAAAAAAAATTCACA+GGG + Chr3:85345725-85345744 None:intergenic 20.0%
!!! AAAAAGATTAAAATTTGGTG+AGG + Chr3:85345030-85345049 None:intergenic 20.0%
!!! AAAAGATTAAAATTTGGTGA+GGG + Chr3:85345029-85345048 None:intergenic 20.0%
!!! TCAAAAAAATGAAGTTTTGT+AGG - Chr3:85346208-85346227 MsG0380016581.01.T01:CDS 20.0%
!!! TTTGAATTTTTGGAATTTGA+AGG + Chr3:85345071-85345090 None:intergenic 20.0%
! AAGAAGAGAATATTCATGAA+GGG - Chr3:85345125-85345144 MsG0380016581.01.T01:three_prime_UTR 25.0%
! CTAAAAAAGAATGTATGTCA+AGG + Chr3:85344981-85345000 None:intergenic 25.0%
! CTAAACAAATGAATTAAGAG+AGG + Chr3:85346264-85346283 None:intergenic 25.0%
! GTTAGGAAAAAAAAATTCAC+AGG + Chr3:85345726-85345745 None:intergenic 25.0%
! TTCCTCCATCATATTATATA+TGG + Chr3:85345107-85345126 None:intergenic 25.0%
!! AAAGATTAAAATTTGGTGAG+GGG + Chr3:85345028-85345047 None:intergenic 25.0%
!! AAAGCAAAGATTTTCAAATG+AGG - Chr3:85345867-85345886 MsG0380016581.01.T01:intron 25.0%
!! AAGCAAAGATTTTCAAATGA+GGG - Chr3:85345868-85345887 MsG0380016581.01.T01:intron 25.0%
!! TTTTTCTTCTTTGAATTCTG+AGG + Chr3:85345193-85345212 None:intergenic 25.0%
!!! AAACTTCATTTTTTTGAGCT+TGG + Chr3:85346205-85346224 None:intergenic 25.0%
!!! GTGAATTTTTTTTTCCTAAC+AGG - Chr3:85345726-85345745 MsG0380016581.01.T01:CDS 25.0%
AAAATTCAAAACTTAGGCCT+TGG - Chr3:85345081-85345100 MsG0380016581.01.T01:three_prime_UTR 30.0%
AATATTCATGAAGGGTTCAA+AGG - Chr3:85345133-85345152 MsG0380016581.01.T01:three_prime_UTR 30.0%
AATCATGCAATAGTTCTCAA+TGG - Chr3:85346067-85346086 MsG0380016581.01.T01:CDS 30.0%
AGAAGATAGAAAACAAGAGA+AGG - Chr3:85345215-85345234 MsG0380016581.01.T01:three_prime_UTR 30.0%
ATTTGAGTCAGAATCAAAGT+TGG - Chr3:85345273-85345292 MsG0380016581.01.T01:three_prime_UTR 30.0%
CATCATATTATATATGGCCA+AGG + Chr3:85345101-85345120 None:intergenic 30.0%
CTTGAAAAAGGAACAAAGAA+TGG - Chr3:85346150-85346169 MsG0380016581.01.T01:CDS 30.0%
CTTGGCCATATATAATATGA+TGG - Chr3:85345099-85345118 MsG0380016581.01.T01:three_prime_UTR 30.0%
GAAGAAGAGAATATTCATGA+AGG - Chr3:85345124-85345143 MsG0380016581.01.T01:three_prime_UTR 30.0%
GATCATACAAATAAACAAGG+TGG + Chr3:85346420-85346439 None:intergenic 30.0%
GATCATTGTAACATATGACT+TGG - Chr3:85346436-85346455 MsG0380016581.01.T01:five_prime_UTR 30.0%
GGTTATTTGTATCACGTTAT+TGG + Chr3:85344960-85344979 None:intergenic 30.0%
TGACAACAACACTTGAAAAA+TGG - Chr3:85346013-85346032 MsG0380016581.01.T01:intron 30.0%
TGATGAACAGATAAGATCAT+TGG - Chr3:85345243-85345262 MsG0380016581.01.T01:three_prime_UTR 30.0%
TTATTGGAACTTGTAAAGGA+AGG + Chr3:85344944-85344963 None:intergenic 30.0%
TTCTTCTATGTTGCAATGTT+TGG - Chr3:85346121-85346140 MsG0380016581.01.T01:CDS 30.0%
TTTAGAGATTTGGAAGAAGA+AGG - Chr3:85346279-85346298 MsG0380016581.01.T01:CDS 30.0%
! AAAATGAAAGAAGCACAACA+TGG - Chr3:85345926-85345945 MsG0380016581.01.T01:intron 30.0%
! AAGATTAAAATTTGGTGAGG+GGG + Chr3:85345027-85345046 None:intergenic 30.0%
! AAGATTTTCAAATGAGGGTT+TGG - Chr3:85345873-85345892 MsG0380016581.01.T01:intron 30.0%
!! CATTCTTTGTTCCTTTTTCA+AGG + Chr3:85346152-85346171 None:intergenic 30.0%
!! TTTTGTAGGCTTGATTTGAT+AGG - Chr3:85346222-85346241 MsG0380016581.01.T01:CDS 30.0%
!!! AGGCCTAAGTTTTGAATTTT+TGG + Chr3:85345081-85345100 None:intergenic 30.0%
!!! TTTTCAAGTGTTGTTGTCAA+GGG + Chr3:85346012-85346031 None:intergenic 30.0%
!!! TTTTTCAAGTGTTGTTGTCA+AGG + Chr3:85346013-85346032 None:intergenic 30.0%
AACATGGACAGAGAAAATTG+AGG - Chr3:85345942-85345961 MsG0380016581.01.T01:intron 35.0%
AACCATATAGCAACTTGTCT+AGG + Chr3:85345343-85345362 None:intergenic 35.0%
AAGACTCTTTCTCTTCCTTA+AGG + Chr3:85345462-85345481 None:intergenic 35.0%
AAGGAAAATAGCACAGAAGA+TGG - Chr3:85345802-85345821 MsG0380016581.01.T01:intron 35.0%
AAGTTAATGTCGAGTCTGTA+AGG + Chr3:85345700-85345719 None:intergenic 35.0%
ACATGCTCAAGCTTAGTATT+AGG - Chr3:85345645-85345664 MsG0380016581.01.T01:CDS 35.0%
ATGCAATAGTTCTCAATGGT+TGG - Chr3:85346071-85346090 MsG0380016581.01.T01:CDS 35.0%
CACGTTATTGGAACTTGTAA+AGG + Chr3:85344948-85344967 None:intergenic 35.0%
CATTGCAACATAGAAGAACA+TGG + Chr3:85346119-85346138 None:intergenic 35.0%
GAAATGGATACAACAATTGC+AGG - Chr3:85345833-85345852 MsG0380016581.01.T01:intron 35.0%
GATTGATCTAACATACCACA+TGG + Chr3:85346051-85346070 None:intergenic 35.0%
GGCCATATATAATATGATGG+AGG - Chr3:85345102-85345121 MsG0380016581.01.T01:three_prime_UTR 35.0%
GGTTCAGAAGCTAAGTTATA+TGG - Chr3:85345747-85345766 MsG0380016581.01.T01:CDS 35.0%
GTTCAAAACATGCAAGTTCA+AGG - Chr3:85346172-85346191 MsG0380016581.01.T01:CDS 35.0%
TCAGAAGCTAAGTTATATGG+TGG - Chr3:85345750-85345769 MsG0380016581.01.T01:intron 35.0%
TCAGAGGTAAGTTAGTAGTT+TGG - Chr3:85345487-85345506 MsG0380016581.01.T01:CDS 35.0%
TTCTAAGTTTCAGTGCCTTA+AGG - Chr3:85345444-85345463 MsG0380016581.01.T01:CDS 35.0%
! ATTTTCAAATGAGGGTTTGG+AGG - Chr3:85345876-85345895 MsG0380016581.01.T01:intron 35.0%
! GTTCTCAATGGTTGGATTTT+TGG - Chr3:85346079-85346098 MsG0380016581.01.T01:CDS 35.0%
!! GTTTGGTGTTTCCTTGAAAA+AGG - Chr3:85346138-85346157 MsG0380016581.01.T01:CDS 35.0%
ACAGAGAAAATTGAGGACAG+AGG - Chr3:85345949-85345968 MsG0380016581.01.T01:intron 40.0%
ACTTAGCTTCTGAACCTGTT+AGG + Chr3:85345743-85345762 None:intergenic 40.0%
AGCCTAGACAAGTTGCTATA+TGG - Chr3:85345338-85345357 MsG0380016581.01.T01:three_prime_UTR 40.0%
ATCACACTGACACAAGCAAA+TGG + Chr3:85346362-85346381 None:intergenic 40.0%
ATGCAACTTGCAAGAGATCT+TGG - Chr3:85345310-85345329 MsG0380016581.01.T01:three_prime_UTR 40.0%
CACAAGCAAATGGATGGAAA+AGG + Chr3:85346352-85346371 None:intergenic 40.0%
GAAAATAGCACAGAAGATGG+TGG - Chr3:85345805-85345824 MsG0380016581.01.T01:intron 40.0%
GAAAGAGTCTTTGCAATCAG+AGG - Chr3:85345471-85345490 MsG0380016581.01.T01:CDS 40.0%
GACTCAGCTCGTTAAATACT+CGG - Chr3:85345597-85345616 MsG0380016581.01.T01:CDS 40.0%
GACTTGGACTCACATAACAT+AGG - Chr3:85346452-85346471 MsG0380016581.01.T01:five_prime_UTR 40.0%
GAGCAAGATGGAAATCAAAG+AGG - Chr3:85345374-85345393 MsG0380016581.01.T01:three_prime_UTR 40.0%
TGAGGGTTTGGAGGATAAAA+TGG - Chr3:85345885-85345904 MsG0380016581.01.T01:intron 40.0%
TGGTACAATGTTGATCCATG+TGG - Chr3:85346033-85346052 MsG0380016581.01.T01:CDS 40.0%
TTCAGAACAGAAGAGCAAGA+TGG - Chr3:85345362-85345381 MsG0380016581.01.T01:three_prime_UTR 40.0%
! AAAATTTGGTGAGGGGGAAT+AGG + Chr3:85345021-85345040 None:intergenic 40.0%
! AAATTTGGTGAGGGGGAATA+GGG + Chr3:85345020-85345039 None:intergenic 40.0%
CACTGACACAAGCAAATGGA+TGG + Chr3:85346358-85346377 None:intergenic 45.0%
CAGAATCAAAGTTGGAGCCA+AGG - Chr3:85345281-85345300 MsG0380016581.01.T01:three_prime_UTR 45.0%
GCAAGTTGCATCTTCTTCCT+TGG + Chr3:85345301-85345320 None:intergenic 45.0%
! AAACATCGCATGATGGAGGA+AGG - Chr3:85345773-85345792 MsG0380016581.01.T01:intron 45.0%
! AACATCGCATGATGGAGGAA+GGG - Chr3:85345774-85345793 MsG0380016581.01.T01:intron 45.0%
! ATGGTGGAAACATCGCATGA+TGG - Chr3:85345766-85345785 MsG0380016581.01.T01:intron 45.0%
! GAAGATGGTGGTTCAGGAAA+TGG - Chr3:85345817-85345836 MsG0380016581.01.T01:intron 45.0%
!! TAATAAAAAAGATTAAAATT+TGG + Chr3:85345035-85345054 None:intergenic 5.0%
GTGGAAACATCGCATGATGG+AGG - Chr3:85345769-85345788 MsG0380016581.01.T01:intron 50.0%
TGATGGAGGAAGGGAAGCTA+AGG - Chr3:85345783-85345802 MsG0380016581.01.T01:intron 50.0%
! AGCACAGAAGATGGTGGTTC+AGG - Chr3:85345811-85345830 MsG0380016581.01.T01:intron 50.0%
Chromosome Type Strat End Strand Name
Chr3 gene 85344929 85346585 85344929 ID=MsG0380016581.01;Name=MsG0380016581.01
Chr3 mRNA 85344929 85346585 85344929 ID=MsG0380016581.01.T01;Parent=MsG0380016581.01;Name=MsG0380016581.01.T01;_AED=0.43;_eAED=0.43;_QI=186|1|1|1|1|1|2|478|245
Chr3 exon 85344929 85345766 85344929 ID=MsG0380016581.01.T01:exon:33650;Parent=MsG0380016581.01.T01
Chr3 exon 85346022 85346585 85346022 ID=MsG0380016581.01.T01:exon:33649;Parent=MsG0380016581.01.T01
Chr3 five_prime_UTR 85346400 85346585 85346400 ID=MsG0380016581.01.T01:five_prime_utr;Parent=MsG0380016581.01.T01
Chr3 CDS 85346022 85346399 85346022 ID=MsG0380016581.01.T01:cds;Parent=MsG0380016581.01.T01
Chr3 CDS 85345407 85345766 85345407 ID=MsG0380016581.01.T01:cds;Parent=MsG0380016581.01.T01
Chr3 three_prime_UTR 85344929 85345406 85344929 ID=MsG0380016581.01.T01:three_prime_utr;Parent=MsG0380016581.01.T01
Gene Sequence

>MsG0380016581.01.T01

ATGATGGAGGAAGAAGAGAATATTCATGAAGGGTTCAAAGGAAAAAATGTTGAAAGCATGAGTTGCTTAGAGACACCTCAGAATTCAAAGAAGAAAAACAAGAAGATAGAAAACAAGAGAAGGTTTAGTGATGAACAGATAAGATCATTGGAATGCATATTTGAGTCAGAATCAAAGTTGGAGCCAAGGAAGAAGATGCAACTTGCAAGAGATCTTGGTTTGCAGCCTAGACAAGTTGCTATATGGTTTCAGAACAGAAGAGCAAGATGGAAATCAAAGAGGATAGAACAAGAATACAGAAAACTCAAAGATGAATATGATAATTTAGCTTCTAAGTTTCAGTGCCTTAAGGAAGAGAAAGAGTCTTTGCAATCAGAGGTTCAGAAGCTAAGTTATATGGTGGAAACATCGCATGATGGAGGAAGGGAAGCTAAGGAAAATAGCACAGAAGATGGTGGTTCAGGAAATGGATACAACAATTGCAGGTTTGAAGAAACAAAGCAAAGATTTTCAAATGAGGGTTTGGAGGATAAAATGGTCATTTACTCAGATGATCAAAATGAAAGAAGCACAACATGGACAGAGAAAATTGAGGACAGAGGAAATCAACTTTTAAGAAATGATGATCATGCAGAAATTCCCTTGACAACAACACTTGAAAAATGGTACAATGTTGATCCATGTGGTATGTTAGATCAATCATGCAATAGTTCTCAATGGTTGGATTTTTGGACTTGA

Protein sequence

>MsG0380016581.01.T01

MMEEEENIHEGFKGKNVESMSCLETPQNSKKKNKKIENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASKFQCLKEEKESLQSEVQKLSYMVETSHDGGREAKENSTEDGGSGNGYNNCRFEETKQRFSNEGLEDKMVIYSDDQNERSTTWTEKIEDRGNQLLRNDDHAEIPLTTTLEKWYNVDPCGMLDQSCNSSQWLDFWT*