Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011727.01.T01 | XP_039688339.1 | 92.12 | 368 | 16 | 2 | 1 | 361 | 1 | 362 | 0 | 640 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180002134.01 | MsG0380011727.01 | 0.818031 | 2.422810e-52 | 1.793305e-49 |
| MsG0180002397.01 | MsG0380011727.01 | 0.821838 | 3.263065e-53 | 2.684959e-50 |
| MsG0180003658.01 | MsG0380011727.01 | 0.807472 | 4.972214e-50 | 2.771962e-47 |
| MsG0180003749.01 | MsG0380011727.01 | 0.809521 | 1.816246e-50 | 1.068720e-47 |
| MsG0180003857.01 | MsG0380011727.01 | 0.815750 | 7.875794e-52 | 5.477037e-49 |
| MsG0180004652.01 | MsG0380011727.01 | 0.804271 | 2.339833e-49 | 1.201239e-46 |
| MsG0280010579.01 | MsG0380011727.01 | 0.800936 | 1.140541e-48 | 5.378393e-46 |
| MsG0380011727.01 | MsG0380014807.01 | 0.840064 | 1.089001e-57 | 1.533542e-54 |
| MsG0380011727.01 | MsG0380015219.01 | 0.802230 | 6.190817e-49 | 3.016535e-46 |
| MsG0380011727.01 | MsG0380016051.01 | 0.813167 | 2.935193e-51 | 1.902611e-48 |
| MsG0380011727.01 | MsG0380016092.01 | 0.827711 | 1.345177e-54 | 1.308973e-51 |
| MsG0380011727.01 | MsG0380016217.01 | 0.806856 | 6.713399e-50 | 3.683263e-47 |
| MsG0380011727.01 | MsG0380017331.01 | 0.843715 | 1.181356e-58 | 1.864486e-55 |
| MsG0380011727.01 | MsG0480022784.01 | 0.846647 | 1.904499e-59 | 3.300594e-56 |
| MsG0380011727.01 | MsG0480023484.01 | 0.822223 | 2.657618e-53 | 2.210771e-50 |
| MsG0380011727.01 | MsG0480023706.01 | 0.839356 | 1.663753e-57 | 2.291986e-54 |
| MsG0380011727.01 | MsG0580024060.01 | 0.812816 | 3.503686e-51 | 2.249824e-48 |
| MsG0380011727.01 | MsG0580025186.01 | 0.807879 | 4.074300e-50 | 2.295425e-47 |
| MsG0380011727.01 | MsG0580027231.01 | 0.823514 | 1.329545e-53 | 1.147252e-50 |
| MsG0380011727.01 | MsG0680035776.01 | 0.831856 | 1.316698e-55 | 1.446846e-52 |
| MsG0380011727.01 | MsG0780036553.01 | 0.846192 | 2.534715e-59 | 4.327732e-56 |
| MsG0380011727.01 | MsG0780038736.01 | 0.803988 | 2.680063e-49 | 1.366037e-46 |
| MsG0380011727.01 | MsG0780039944.01 | 0.811154 | 8.069442e-51 | 4.957664e-48 |
| MsG0380011727.01 | MsG0780040641.01 | 0.820875 | 5.443019e-53 | 4.359641e-50 |
| MsG0380011727.01 | MsG0780040978.01 | 0.801572 | 8.452977e-49 | 4.050435e-46 |
| MsG0380011727.01 | MsG0780041359.01 | 0.806463 | 8.126889e-50 | 4.413960e-47 |
| MsG0380011727.01 | MsG0880043714.01 | 0.802479 | 5.502745e-49 | 2.698253e-46 |
| MsG0380011727.01 | MsG0880044437.01 | 0.802318 | 5.938247e-49 | 2.900184e-46 |
| MsG0380011727.01 | MsG0880045439.01 | 0.830476 | 2.873810e-55 | 3.031024e-52 |
| MsG0380011727.01 | MsG0880045647.01 | 0.816569 | 5.168127e-52 | 3.675222e-49 |
| MsG0380011727.01 | MsG0880046904.01 | 0.818034 | 2.419962e-52 | 1.791292e-49 |
| MsG0380011727.01 | MsG0880047345.01 | 0.816535 | 5.260680e-52 | 3.737391e-49 |
| MsG0380011727.01 | MsG0880047649.01 | 0.806541 | 7.822548e-50 | 4.257207e-47 |
| MsG0280009216.01 | MsG0380011727.01 | 0.804266 | 2.345697e-49 | 1.204088e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011727.01.T01 | MTR_3g009560 | 92.120 | 368 | 16 | 2 | 1 | 361 | 1 | 362 | 0.0 | 640 |
| MsG0380011727.01.T01 | MTR_8g098575 | 38.009 | 221 | 118 | 2 | 160 | 361 | 150 | 370 | 2.64e-42 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011727.01.T01 | AT5G56220 | 61.538 | 338 | 116 | 8 | 34 | 367 | 34 | 361 | 2.36e-123 | 380 |
| MsG0380011727.01.T01 | AT5G56220 | 61.538 | 338 | 116 | 8 | 34 | 367 | 34 | 361 | 2.36e-123 | 380 |
| MsG0380011727.01.T01 | AT4G23440 | 32.143 | 308 | 164 | 7 | 95 | 361 | 38 | 341 | 3.11e-45 | 167 |
| MsG0380011727.01.T01 | AT4G23440 | 32.143 | 308 | 164 | 7 | 95 | 361 | 38 | 341 | 3.11e-45 | 167 |
Find 75 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTTGGAGGAACTGTTTC+AGG | 0.170120 | 3:+4166930 | None:intergenic |
| TGGAAGAGAGAAAGAGATTA+TGG | 0.238206 | 3:-4166295 | MsG0380011727.01.T01:CDS |
| GACATCACAGCTTCCAAGTT+TGG | 0.261069 | 3:+4166839 | None:intergenic |
| GGAGATTGAAGGTTTACTTT+TGG | 0.316383 | 3:-4166274 | MsG0380011727.01.T01:CDS |
| GTCATTTGCTCGGTTGCTTT+CGG | 0.329782 | 3:-4166672 | MsG0380011727.01.T01:CDS |
| CTGTGGCTCTTGGAGATATA+TGG | 0.336449 | 3:+4167114 | None:intergenic |
| GGAAATGAGAATGAAATTCT+TGG | 0.342118 | 3:+4166915 | None:intergenic |
| GTAGTAATAGTACTAGTAGT+AGG | 0.346349 | 3:+4167083 | None:intergenic |
| CATTCTCATTTCCAGTTCCT+AGG | 0.365652 | 3:-4166905 | MsG0380011727.01.T01:CDS |
| TGTTACTAGAGATTCCTATC+TGG | 0.384104 | 3:+4167297 | None:intergenic |
| AAAGAGATTATGGAGATTGA+AGG | 0.401871 | 3:-4166285 | MsG0380011727.01.T01:CDS |
| AGTTTGGAGTTTGTTGTAGC+AGG | 0.403730 | 3:+4166855 | None:intergenic |
| AAATCTGAGCTTGAGCTTCA+AGG | 0.405691 | 3:-4166762 | MsG0380011727.01.T01:CDS |
| CCAACAAAATATGCATTCCT+TGG | 0.406509 | 3:+4166315 | None:intergenic |
| GAACTACTAGGAACATCTTC+TGG | 0.416102 | 3:+4167029 | None:intergenic |
| TTGGAAAAGGCGGTGGCGGC+AGG | 0.417460 | 3:-4166150 | MsG0380011727.01.T01:CDS |
| GGTAATGTATCAAAGAATAT+AGG | 0.420107 | 3:+4166564 | None:intergenic |
| TTCATAAGGTGATGATTCTA+TGG | 0.430881 | 3:+4167187 | None:intergenic |
| TTGCTCGGTTGCTTTCGGTT+TGG | 0.442747 | 3:-4166667 | MsG0380011727.01.T01:CDS |
| GCAAATGAAACCCTAGGAAC+TGG | 0.443583 | 3:+4166894 | None:intergenic |
| AAATATGCATTCCTTGGAAA+AGG | 0.455022 | 3:+4166321 | None:intergenic |
| TCACCTCTTCCATGCTTAAA+CGG | 0.458625 | 3:+4166616 | None:intergenic |
| TAGGAAGAATGTTGGTCATA+AGG | 0.467246 | 3:-4166379 | MsG0380011727.01.T01:CDS |
| ATTCTCATTTCCAGTTCCTA+GGG | 0.468075 | 3:-4166904 | MsG0380011727.01.T01:CDS |
| TTGCAAAAGCGAATAAGATT+CGG | 0.475368 | 3:+4166792 | None:intergenic |
| ATAGTACTAGTAGTAGGGTT+TGG | 0.478901 | 3:+4167089 | None:intergenic |
| GGGTTTGGAACTGTGGCTCT+TGG | 0.479845 | 3:+4167104 | None:intergenic |
| CTTCCATGCTTAAACGGTTG+AGG | 0.488878 | 3:+4166622 | None:intergenic |
| GCTACAACAAACTCCAAACT+TGG | 0.490521 | 3:-4166852 | MsG0380011727.01.T01:CDS |
| GTGTCATCAGAAAACTCATA+AGG | 0.500099 | 3:+4166987 | None:intergenic |
| GTTTGGAGTTTGTTGTAGCA+GGG | 0.505097 | 3:+4166856 | None:intergenic |
| TAGTAATAGTACTAGTAGTA+GGG | 0.509727 | 3:+4167084 | None:intergenic |
| CAAGGTGGTAGCAACCAGAT+AGG | 0.519220 | 3:-4167311 | MsG0380011727.01.T01:CDS |
| AGTGAAACTACGGTTGGAAA+AGG | 0.522401 | 3:-4166163 | MsG0380011727.01.T01:CDS |
| ACGGTTGGAAAAGGCGGTGG+CGG | 0.528145 | 3:-4166154 | MsG0380011727.01.T01:CDS |
| CAAGATCATTGTAGAGCAAG+TGG | 0.533092 | 3:-4166220 | MsG0380011727.01.T01:CDS |
| AGAAGTGACATAATCTCAGC+AGG | 0.533539 | 3:+4166543 | None:intergenic |
| AAGGATAATCATAATATGCT+AGG | 0.535401 | 3:-4166360 | MsG0380011727.01.T01:CDS |
| AATGAGAATGAAATTCTTGG+AGG | 0.543849 | 3:+4166918 | None:intergenic |
| GAAGAAAGTGAAACTACGGT+TGG | 0.545153 | 3:-4166169 | MsG0380011727.01.T01:CDS |
| CATTGTAGAGCAAGTGGCAG+CGG | 0.545405 | 3:-4166214 | MsG0380011727.01.T01:CDS |
| AGTGATAGAGAGGAATATCA+AGG | 0.546866 | 3:-4167329 | MsG0380011727.01.T01:CDS |
| GAAAACTCATAAGGATCAGA+AGG | 0.548314 | 3:+4166996 | None:intergenic |
| AGAAACAGAGGTGATTCATA+AGG | 0.548647 | 3:+4167173 | None:intergenic |
| CAACCGTTTAAGCATGGAAG+AGG | 0.556457 | 3:-4166619 | MsG0380011727.01.T01:CDS |
| TAAAGAATGTAAAGAAGCGA+TGG | 0.557061 | 3:-4166502 | MsG0380011727.01.T01:CDS |
| AGGATCAGAAGGAGGGGTGT+AGG | 0.557170 | 3:+4167007 | None:intergenic |
| TGACTCTATCAGCAATCTCA+TGG | 0.557417 | 3:+4166691 | None:intergenic |
| TGCTGATAGAGTCATTTGCT+CGG | 0.561389 | 3:-4166682 | MsG0380011727.01.T01:CDS |
| GGAACATCTTCTGGTGTGGA+AGG | 0.564570 | 3:+4167038 | None:intergenic |
| GGAAGCTGTGATGTCTACAT+TGG | 0.564889 | 3:-4166831 | MsG0380011727.01.T01:CDS |
| GATGTCTACATTGGATTCCA+TGG | 0.568511 | 3:-4166822 | MsG0380011727.01.T01:CDS |
| GAATGTAAAGAAGCGATGGA+TGG | 0.569620 | 3:-4166498 | MsG0380011727.01.T01:CDS |
| TTTCCTCAACCGTTTAAGCA+TGG | 0.573519 | 3:-4166625 | MsG0380011727.01.T01:CDS |
| CTCATAAGGATCAGAAGGAG+GGG | 0.584162 | 3:+4167001 | None:intergenic |
| GGAGGGGTGTAGGAACTACT+AGG | 0.585887 | 3:+4167017 | None:intergenic |
| AGGATTTGTAGTGGTGAAGG+TGG | 0.587983 | 3:+4167058 | None:intergenic |
| AGTAGTAGGGTTTGGAACTG+TGG | 0.588099 | 3:+4167097 | None:intergenic |
| AGATGAAGAAAGTGAAACTA+CGG | 0.592811 | 3:-4166173 | MsG0380011727.01.T01:CDS |
| TTCTTTGCAAATGAAACCCT+AGG | 0.597268 | 3:+4166888 | None:intergenic |
| ACTCATAAGGATCAGAAGGA+GGG | 0.604976 | 3:+4167000 | None:intergenic |
| GGAAGGATTTGTAGTGGTGA+AGG | 0.606188 | 3:+4167055 | None:intergenic |
| AACTCATAAGGATCAGAAGG+AGG | 0.608649 | 3:+4166999 | None:intergenic |
| GCTGAAACAAATGCTGATGA+AGG | 0.612105 | 3:+4167147 | None:intergenic |
| TTTGGAGTTTGTTGTAGCAG+GGG | 0.612134 | 3:+4166857 | None:intergenic |
| AGTGGCAGCGGACAATCTGA+AGG | 0.612931 | 3:-4166202 | MsG0380011727.01.T01:CDS |
| AGACTTGGTAGGAAGAATGT+TGG | 0.613159 | 3:-4166387 | MsG0380011727.01.T01:CDS |
| ACTAGGAACATCTTCTGGTG+TGG | 0.614082 | 3:+4167034 | None:intergenic |
| ACTACGGTTGGAAAAGGCGG+TGG | 0.614665 | 3:-4166157 | MsG0380011727.01.T01:CDS |
| ATTCATGGAAAGTGATAGAG+AGG | 0.616199 | 3:-4167339 | None:intergenic |
| GAAACAAATGCTGATGAAGG+TGG | 0.627253 | 3:+4167150 | None:intergenic |
| TGGTGTGGAAGGATTTGTAG+TGG | 0.638361 | 3:+4167049 | None:intergenic |
| GATAGAGAGGAATATCAAGG+TGG | 0.665112 | 3:-4167326 | MsG0380011727.01.T01:CDS |
| GAAACTACGGTTGGAAAAGG+CGG | 0.688660 | 3:-4166160 | MsG0380011727.01.T01:CDS |
| TGATGAAGGTGGAGAAACAG+AGG | 0.745896 | 3:+4167161 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAGGATAATCATAATATGCT+AGG | - | Chr3:4167118-4167137 | MsG0380011727.01.T01:CDS | 25.0% |
| ! | GGTAATGTATCAAAGAATAT+AGG | + | Chr3:4166917-4166936 | None:intergenic | 25.0% |
| ! | TAGTAATAGTACTAGTAGTA+GGG | + | Chr3:4166397-4166416 | None:intergenic | 25.0% |
| AAAGAGATTATGGAGATTGA+AGG | - | Chr3:4167193-4167212 | MsG0380011727.01.T01:CDS | 30.0% | |
| AAATATGCATTCCTTGGAAA+AGG | + | Chr3:4167160-4167179 | None:intergenic | 30.0% | |
| AATGAGAATGAAATTCTTGG+AGG | + | Chr3:4166563-4166582 | None:intergenic | 30.0% | |
| AGATGAAGAAAGTGAAACTA+CGG | - | Chr3:4167305-4167324 | MsG0380011727.01.T01:CDS | 30.0% | |
| GGAAATGAGAATGAAATTCT+TGG | + | Chr3:4166566-4166585 | None:intergenic | 30.0% | |
| GTAGTAATAGTACTAGTAGT+AGG | + | Chr3:4166398-4166417 | None:intergenic | 30.0% | |
| TAAAGAATGTAAAGAAGCGA+TGG | - | Chr3:4166976-4166995 | MsG0380011727.01.T01:CDS | 30.0% | |
| TTCATAAGGTGATGATTCTA+TGG | + | Chr3:4166294-4166313 | None:intergenic | 30.0% | |
| TTGCAAAAGCGAATAAGATT+CGG | + | Chr3:4166689-4166708 | None:intergenic | 30.0% | |
| ! | AGAGTTTATTACCTTTTCCA+AGG | - | Chr3:4167146-4167165 | MsG0380011727.01.T01:CDS | 30.0% |
| ! | TCTATGGAAGTTTTTGTGTT+TGG | + | Chr3:4166278-4166297 | None:intergenic | 30.0% |
| !! | AGTATTTTAAGAGCAAGACT+TGG | - | Chr3:4167076-4167095 | MsG0380011727.01.T01:CDS | 30.0% |
| !! | TGGAAGTAGGAATTGTTTTA+TGG | - | Chr3:4167224-4167243 | MsG0380011727.01.T01:CDS | 30.0% |
| AGAAACAGAGGTGATTCATA+AGG | + | Chr3:4166308-4166327 | None:intergenic | 35.0% | |
| AGTGATAGAGAGGAATATCA+AGG | - | Chr3:4166149-4166168 | MsG0380011727.01.T01:CDS | 35.0% | |
| ATAGTACTAGTAGTAGGGTT+TGG | + | Chr3:4166392-4166411 | None:intergenic | 35.0% | |
| ATTCTCATTTCCAGTTCCTA+GGG | - | Chr3:4166574-4166593 | MsG0380011727.01.T01:CDS | 35.0% | |
| CCAACAAAATATGCATTCCT+TGG | + | Chr3:4167166-4167185 | None:intergenic | 35.0% | |
| CCAACTAGCATCAAAAAACA+AGG | - | Chr3:4166224-4166243 | MsG0380011727.01.T01:CDS | 35.0% | |
| GAAAACTCATAAGGATCAGA+AGG | + | Chr3:4166485-4166504 | None:intergenic | 35.0% | |
| GTGTCATCAGAAAACTCATA+AGG | + | Chr3:4166494-4166513 | None:intergenic | 35.0% | |
| TAGGAAGAATGTTGGTCATA+AGG | - | Chr3:4167099-4167118 | MsG0380011727.01.T01:CDS | 35.0% | |
| TGGAAGAGAGAAAGAGATTA+TGG | - | Chr3:4167183-4167202 | MsG0380011727.01.T01:CDS | 35.0% | |
| TGTTACTAGAGATTCCTATC+TGG | + | Chr3:4166184-4166203 | None:intergenic | 35.0% | |
| TTCTTTGCAAATGAAACCCT+AGG | + | Chr3:4166593-4166612 | None:intergenic | 35.0% | |
| ! | CCAAGGAATGCATATTTTGT+TGG | - | Chr3:4167163-4167182 | MsG0380011727.01.T01:CDS | 35.0% |
| ! | GGAGATTGAAGGTTTACTTT+TGG | - | Chr3:4167204-4167223 | MsG0380011727.01.T01:CDS | 35.0% |
| ! | TAAGATTCGGATTTTGTCCA+TGG | + | Chr3:4166676-4166695 | None:intergenic | 35.0% |
| ! | TTTTGTCTAGAGGCTAATGA+TGG | - | Chr3:4167022-4167041 | MsG0380011727.01.T01:CDS | 35.0% |
| !! | ATCTTATTCGCTTTTGCAAG+TGG | - | Chr3:4166690-4166709 | MsG0380011727.01.T01:CDS | 35.0% |
| !! | GAAGGTTTACTTTTGGAAGT+AGG | - | Chr3:4167211-4167230 | MsG0380011727.01.T01:CDS | 35.0% |
| !! | GAAGTTTTTGTGTTTGGTGA+AGG | + | Chr3:4166272-4166291 | None:intergenic | 35.0% |
| !! | TTTTAAGAGCAAGACTTGGT+AGG | - | Chr3:4167080-4167099 | MsG0380011727.01.T01:CDS | 35.0% |
| !!! | CCTTGTTTTTTGATGCTAGT+TGG | + | Chr3:4166227-4166246 | None:intergenic | 35.0% |
| AAATCTGAGCTTGAGCTTCA+AGG | - | Chr3:4166716-4166735 | MsG0380011727.01.T01:CDS | 40.0% | |
| AACTCATAAGGATCAGAAGG+AGG | + | Chr3:4166482-4166501 | None:intergenic | 40.0% | |
| ACTCATAAGGATCAGAAGGA+GGG | + | Chr3:4166481-4166500 | None:intergenic | 40.0% | |
| AGAAGTGACATAATCTCAGC+AGG | + | Chr3:4166938-4166957 | None:intergenic | 40.0% | |
| AGTGAAACTACGGTTGGAAA+AGG | - | Chr3:4167315-4167334 | MsG0380011727.01.T01:CDS | 40.0% | |
| ATTCTTGGAGGAACTGTTTC+AGG | + | Chr3:4166551-4166570 | None:intergenic | 40.0% | |
| CAAGATCATTGTAGAGCAAG+TGG | - | Chr3:4167258-4167277 | MsG0380011727.01.T01:CDS | 40.0% | |
| CATTCTCATTTCCAGTTCCT+AGG | - | Chr3:4166573-4166592 | MsG0380011727.01.T01:CDS | 40.0% | |
| GAAACAAATGCTGATGAAGG+TGG | + | Chr3:4166331-4166350 | None:intergenic | 40.0% | |
| GAACTACTAGGAACATCTTC+TGG | + | Chr3:4166452-4166471 | None:intergenic | 40.0% | |
| GAAGAAAGTGAAACTACGGT+TGG | - | Chr3:4167309-4167328 | MsG0380011727.01.T01:CDS | 40.0% | |
| GAATGTAAAGAAGCGATGGA+TGG | - | Chr3:4166980-4166999 | MsG0380011727.01.T01:CDS | 40.0% | |
| GATAGAGAGGAATATCAAGG+TGG | - | Chr3:4166152-4166171 | MsG0380011727.01.T01:CDS | 40.0% | |
| GATGTCTACATTGGATTCCA+TGG | - | Chr3:4166656-4166675 | MsG0380011727.01.T01:CDS | 40.0% | |
| GCTACAACAAACTCCAAACT+TGG | - | Chr3:4166626-4166645 | MsG0380011727.01.T01:CDS | 40.0% | |
| GCTGAAACAAATGCTGATGA+AGG | + | Chr3:4166334-4166353 | None:intergenic | 40.0% | |
| TCACCTCTTCCATGCTTAAA+CGG | + | Chr3:4166865-4166884 | None:intergenic | 40.0% | |
| TGACTCTATCAGCAATCTCA+TGG | + | Chr3:4166790-4166809 | None:intergenic | 40.0% | |
| TGCTGATAGAGTCATTTGCT+CGG | - | Chr3:4166796-4166815 | MsG0380011727.01.T01:CDS | 40.0% | |
| TTTCCTCAACCGTTTAAGCA+TGG | - | Chr3:4166853-4166872 | MsG0380011727.01.T01:CDS | 40.0% | |
| ! | AGACTTGGTAGGAAGAATGT+TGG | - | Chr3:4167091-4167110 | MsG0380011727.01.T01:CDS | 40.0% |
| !! | AGTTTGGAGTTTGTTGTAGC+AGG | + | Chr3:4166626-4166645 | None:intergenic | 40.0% |
| !! | GTGCAATGAGTTTTGTCTAG+AGG | - | Chr3:4167012-4167031 | MsG0380011727.01.T01:CDS | 40.0% |
| !! | GTTTGGAGTTTGTTGTAGCA+GGG | + | Chr3:4166625-4166644 | None:intergenic | 40.0% |
| !! | TTTGGAGTTTGTTGTAGCAG+GGG | + | Chr3:4166624-4166643 | None:intergenic | 40.0% |
| ACTAGGAACATCTTCTGGTG+TGG | + | Chr3:4166447-4166466 | None:intergenic | 45.0% | |
| AGGATTTGTAGTGGTGAAGG+TGG | + | Chr3:4166423-4166442 | None:intergenic | 45.0% | |
| CAACCGTTTAAGCATGGAAG+AGG | - | Chr3:4166859-4166878 | MsG0380011727.01.T01:CDS | 45.0% | |
| CTCATAAGGATCAGAAGGAG+GGG | + | Chr3:4166480-4166499 | None:intergenic | 45.0% | |
| CTGTGGCTCTTGGAGATATA+TGG | + | Chr3:4166367-4166386 | None:intergenic | 45.0% | |
| CTTCCATGCTTAAACGGTTG+AGG | + | Chr3:4166859-4166878 | None:intergenic | 45.0% | |
| GAAACTACGGTTGGAAAAGG+CGG | - | Chr3:4167318-4167337 | MsG0380011727.01.T01:CDS | 45.0% | |
| GACATCACAGCTTCCAAGTT+TGG | + | Chr3:4166642-4166661 | None:intergenic | 45.0% | |
| GCAAATGAAACCCTAGGAAC+TGG | + | Chr3:4166587-4166606 | None:intergenic | 45.0% | |
| GGAAGCTGTGATGTCTACAT+TGG | - | Chr3:4166647-4166666 | MsG0380011727.01.T01:CDS | 45.0% | |
| GGAAGGATTTGTAGTGGTGA+AGG | + | Chr3:4166426-4166445 | None:intergenic | 45.0% | |
| TGATGAAGGTGGAGAAACAG+AGG | + | Chr3:4166320-4166339 | None:intergenic | 45.0% | |
| TGGTGTGGAAGGATTTGTAG+TGG | + | Chr3:4166432-4166451 | None:intergenic | 45.0% | |
| ! | AGTAGTAGGGTTTGGAACTG+TGG | + | Chr3:4166384-4166403 | None:intergenic | 45.0% |
| ! | GTCATTTGCTCGGTTGCTTT+CGG | - | Chr3:4166806-4166825 | MsG0380011727.01.T01:CDS | 45.0% |
| CAAGGTGGTAGCAACCAGAT+AGG | - | Chr3:4166167-4166186 | MsG0380011727.01.T01:CDS | 50.0% | |
| CATTGTAGAGCAAGTGGCAG+CGG | - | Chr3:4167264-4167283 | MsG0380011727.01.T01:CDS | 50.0% | |
| GGAACATCTTCTGGTGTGGA+AGG | + | Chr3:4166443-4166462 | None:intergenic | 50.0% | |
| ! | TTGCTCGGTTGCTTTCGGTT+TGG | - | Chr3:4166811-4166830 | MsG0380011727.01.T01:CDS | 50.0% |
| ACTACGGTTGGAAAAGGCGG+TGG | - | Chr3:4167321-4167340 | MsG0380011727.01.T01:CDS | 55.0% | |
| AGTGGCAGCGGACAATCTGA+AGG | - | Chr3:4167276-4167295 | MsG0380011727.01.T01:CDS | 55.0% | |
| ! | AGGATCAGAAGGAGGGGTGT+AGG | + | Chr3:4166474-4166493 | None:intergenic | 55.0% |
| ! | GGAGGGGTGTAGGAACTACT+AGG | + | Chr3:4166464-4166483 | None:intergenic | 55.0% |
| ! | GGGTTTGGAACTGTGGCTCT+TGG | + | Chr3:4166377-4166396 | None:intergenic | 55.0% |
| ACGGTTGGAAAAGGCGGTGG+CGG | - | Chr3:4167324-4167343 | MsG0380011727.01.T01:CDS | 60.0% | |
| ! | TTGGAAAAGGCGGTGGCGGC+AGG | - | Chr3:4167328-4167347 | MsG0380011727.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 4166143 | 4167357 | 4166143 | ID=MsG0380011727.01;Name=MsG0380011727.01 |
| Chr3 | mRNA | 4166143 | 4167357 | 4166143 | ID=MsG0380011727.01.T01;Parent=MsG0380011727.01;Name=MsG0380011727.01.T01;_AED=0.36;_eAED=0.40;_QI=0|-1|0|1|-1|1|1|0|404 |
| Chr3 | exon | 4166143 | 4167357 | 4166143 | ID=MsG0380011727.01.T01:exon:1079;Parent=MsG0380011727.01.T01 |
| Chr3 | CDS | 4166143 | 4167357 | 4166143 | ID=MsG0380011727.01.T01:cds;Parent=MsG0380011727.01.T01 |
| Gene Sequence |
| Protein sequence |
