AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016217.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016217.01.T01 MTR_3g085750 88.981 481 10 2 1 438 1 481 0.0 866
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016217.01.T01 AT1G67630 53.564 491 165 11 3 438 5 487 3.97e-170 493

Find 122 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAAATTAACGCTTCAATTT+TGG 0.120706 3:-80577144 MsG0380016217.01.T01:three_prime_UTR
ACAGTTCCTTTCTTGATGTC+TGG 0.222575 3:+80578786 None:intergenic
GGAAGATTATGTAGAAAGTA+TGG 0.230887 3:-80578626 MsG0380016217.01.T01:CDS
TTCCCCTTTGCTAATCTTCC+CGG 0.273847 3:+80577210 None:intergenic
TGCTAATCTTCCCGGATTTA+CGG 0.274662 3:+80577218 None:intergenic
ACCATACCTGACGTAGAAAA+TGG 0.283304 3:-80581191 MsG0380016217.01.T01:CDS
TTGCCTAGTTGCATCTAAAT+TGG 0.287998 3:-80579511 MsG0380016217.01.T01:CDS
GGGAAGCTTATTATCTTAAC+AGG 0.298972 3:-80582286 MsG0380016217.01.T01:intron
CAGTTCCTTTCTTGATGTCT+GGG 0.299498 3:+80578787 None:intergenic
AAATTGTCTGTTGTAGTAAA+AGG 0.318473 3:+80579035 None:intergenic
GATATTATTAAGGAGGAAAC+TGG 0.336739 3:-80581995 MsG0380016217.01.T01:CDS
TCTTGATAGGTAGTTGGAAT+TGG 0.343246 3:-80579555 MsG0380016217.01.T01:intron
AGATGTTCATTGGTGATTCA+TGG 0.343466 3:-80581095 MsG0380016217.01.T01:CDS
TTCTCCTTGTACCATCTATA+CGG 0.343514 3:-80578588 MsG0380016217.01.T01:CDS
TCATTTGCCTCGAAGATTCC+AGG 0.346489 3:+80578288 None:intergenic
ACGATTATTCGTTGGTGTGC+TGG 0.356878 3:+80581346 None:intergenic
CTCAACAGTATTGAGCATTC+TGG 0.364573 3:-80579723 MsG0380016217.01.T01:intron
TCAATAGCTTGCTTCTTTGA+AGG 0.383809 3:+80579447 None:intergenic
ATCTGGAAAGCCGGCTGATC+TGG 0.384813 3:-80581267 MsG0380016217.01.T01:CDS
TGTGAAAGAAGATATTATTA+AGG 0.385269 3:-80582005 MsG0380016217.01.T01:CDS
GAAATGCATTGCCGTAAATC+CGG 0.385667 3:-80577229 MsG0380016217.01.T01:CDS
AATTGTACAAAATGCTGAAA+TGG 0.396052 3:-80582056 MsG0380016217.01.T01:CDS
ATGAATCTGCAACCTGGTTT+CGG 0.400151 3:+80581065 None:intergenic
GACCAGGGAAAACTGAATAA+TGG 0.412886 3:+80579664 None:intergenic
ACCTACTTGCTTTCGAAACT+CGG 0.416574 3:-80577079 MsG0380016217.01.T01:three_prime_UTR
GGGTGTTCAGAATCAATAAA+TGG 0.419793 3:+80578807 None:intergenic
ACCACCACAGTTGCTTGTAT+TGG 0.422824 3:-80578967 MsG0380016217.01.T01:intron
TTCTTCTTCGAAATCGAACC+TGG 0.428052 3:+80582473 None:intergenic
TGAGCCTCTTGTAGAACTGC+TGG 0.428718 3:-80579006 MsG0380016217.01.T01:CDS
GTTGCAGATTCATGTATGAT+AGG 0.430713 3:-80581055 MsG0380016217.01.T01:CDS
TCATTGGTGATTCATGGATC+AGG 0.431928 3:-80581089 MsG0380016217.01.T01:CDS
CTTCCGATCTCGTCTCAAGC+TGG 0.441376 3:-80582307 MsG0380016217.01.T01:CDS
TGGTTAGCATCCCGTATAGA+TGG 0.442734 3:+80578577 None:intergenic
CATGATACACCATCTTTGTA+TGG 0.443096 3:-80581302 MsG0380016217.01.T01:CDS
CGATTATTCGTTGGTGTGCT+GGG 0.444015 3:+80581347 None:intergenic
AGTCTGTCATGTTGCAGAGC+AGG 0.444572 3:-80580582 MsG0380016217.01.T01:intron
TGCAACTAGGCAATGCCCAC+TGG 0.447205 3:+80579521 None:intergenic
CCTAGTTGCATCTAAATTGG+TGG 0.449877 3:-80579508 MsG0380016217.01.T01:CDS
GCTTCATCTTGATAGGTAGT+TGG 0.458139 3:-80579561 MsG0380016217.01.T01:intron
TTTGTAGAACTTGATTATAG+TGG 0.460358 3:-80577176 MsG0380016217.01.T01:exon
ATAGCCAGTCTCACTAATCC+TGG 0.463280 3:-80578306 MsG0380016217.01.T01:CDS
GTATGATAGGACTGAGGATA+AGG 0.465764 3:-80581042 MsG0380016217.01.T01:intron
TGTTTCTTACTCACCTGACC+AGG 0.466872 3:+80579648 None:intergenic
TGAAGGATTCAAATCCTCCT+TGG 0.470306 3:+80579464 None:intergenic
AAAGAAGCAAGCTATTGATA+AGG 0.484721 3:-80579442 MsG0380016217.01.T01:CDS
TTGTAGAACTTGATTATAGT+GGG 0.485045 3:-80577175 MsG0380016217.01.T01:exon
TTCCGATCTCGTCTCAAGCT+GGG 0.494489 3:-80582306 MsG0380016217.01.T01:CDS
GAATAATCAAAATCTTCAAA+TGG 0.497969 3:+80577121 None:intergenic
TCAAGAAAGGAACTGTGGAC+AGG 0.503637 3:-80578779 MsG0380016217.01.T01:CDS
CACTAATCCTGGAATCTTCG+AGG 0.503927 3:-80578295 MsG0380016217.01.T01:CDS
TGATTACAAAGCAGTTCAGT+TGG 0.504508 3:+80579411 None:intergenic
TGATAGGTAGTTGGAATTGG+AGG 0.506513 3:-80579552 MsG0380016217.01.T01:intron
AAATGCATTGCCGTAAATCC+GGG 0.513156 3:-80577228 MsG0380016217.01.T01:CDS
GGCTTAAACGCTGCAAGTCA+AGG 0.518461 3:+80579685 None:intergenic
GATTCCAGGATTAGTGAGAC+TGG 0.520895 3:+80578302 None:intergenic
AAAATATTTCCATACAAAGA+TGG 0.522271 3:+80581293 None:intergenic
CCACCAATTTAGATGCAACT+AGG 0.524122 3:+80579508 None:intergenic
CATGGATCAGGGCCGAAACC+AGG 0.528621 3:-80581077 MsG0380016217.01.T01:CDS
TACAAAATGCTGAAATGGAA+GGG 0.533300 3:-80582051 MsG0380016217.01.T01:CDS
GAAGATTATGTAGAAAGTAT+GGG 0.533403 3:-80578625 MsG0380016217.01.T01:CDS
AATCAGAATTCAAGAAAGCC+AGG 0.535673 3:-80582491 MsG0380016217.01.T01:CDS
GGTTTGCATCTTTATTCCAT+CGG 0.535724 3:-80581974 MsG0380016217.01.T01:CDS
GTACAAAATGCTGAAATGGA+AGG 0.538126 3:-80582052 MsG0380016217.01.T01:CDS
CATTGGTGATTCATGGATCA+GGG 0.542239 3:-80581088 MsG0380016217.01.T01:CDS
CAGCTTGAGACGAGATCGGA+AGG 0.546989 3:+80582308 None:intergenic
AATCCGGGAAGATTAGCAAA+GGG 0.549333 3:-80577213 MsG0380016217.01.T01:CDS
ACATCTTGACGATTATTCGT+TGG 0.552885 3:+80581338 None:intergenic
CAAGAAAGGAACTGTGGACA+GGG 0.552995 3:-80578778 MsG0380016217.01.T01:CDS
GCTTAACAGATTATTGCGGC+TGG 0.557278 3:-80579059 MsG0380016217.01.T01:intron
GTAGAACTTGATTATAGTGG+GGG 0.559029 3:-80577173 MsG0380016217.01.T01:exon
GCAACTAGGCAATGCCCACT+GGG 0.559407 3:+80579522 None:intergenic
TTACATTTCTACATCTCCGA+TGG 0.560768 3:+80581958 None:intergenic
GATAGGTAGTTGGAATTGGA+GGG 0.567631 3:-80579551 MsG0380016217.01.T01:intron
ATTAGCAAAGGGGAAGGCGG+AGG 0.568855 3:-80577202 MsG0380016217.01.T01:CDS
GCTTGAGACGAGATCGGAAG+GGG 0.570414 3:+80582310 None:intergenic
AAGGGTGTAACCAGATCAGC+CGG 0.571145 3:+80581257 None:intergenic
CCTACTTGCTTTCGAAACTC+GGG 0.573006 3:-80577078 MsG0380016217.01.T01:three_prime_UTR
GAACACCCAGACATCAAGAA+AGG 0.575115 3:-80578792 MsG0380016217.01.T01:CDS
GGTGATATTTGACAGACAGC+TGG 0.575422 3:-80582086 MsG0380016217.01.T01:intron
GGGCAGGTTCTTGATAATGA+AGG 0.576740 3:-80577270 MsG0380016217.01.T01:intron
CAAATCCTCCTTGGCAACAG+AGG 0.580356 3:+80579473 None:intergenic
CATCCCGTATAGATGGTACA+AGG 0.581719 3:+80578584 None:intergenic
TAATCAGAGAGAGTTATCAA+TGG 0.583256 3:-80579394 MsG0380016217.01.T01:intron
GAAAGAAGATATTATTAAGG+AGG 0.584316 3:-80582002 MsG0380016217.01.T01:CDS
TATACCTACCTCTGTTGCCA+AGG 0.585658 3:-80579481 MsG0380016217.01.T01:CDS
TCGTTTGGAAGTCTTGAGGA+AGG 0.590862 3:-80578739 MsG0380016217.01.T01:intron
ATGATTTGTTGTGACGGAGA+AGG 0.595013 3:-80580619 MsG0380016217.01.T01:CDS
TTCCCAGCTTGAGACGAGAT+CGG 0.595051 3:+80582304 None:intergenic
AAAGATGGTGTATCATGCAT+AGG 0.599699 3:+80581308 None:intergenic
AACAGTATTGAGCATTCTGG+AGG 0.602568 3:-80579720 MsG0380016217.01.T01:intron
TCTCCTTGTACCATCTATAC+GGG 0.603113 3:-80578587 MsG0380016217.01.T01:CDS
TGGAATCTTCGAGGCAAATG+AGG 0.605385 3:-80578286 MsG0380016217.01.T01:intron
TGTAGAACTTGATTATAGTG+GGG 0.609960 3:-80577174 MsG0380016217.01.T01:exon
GTTGGCATGATTTGTTGTGA+CGG 0.611041 3:-80580625 MsG0380016217.01.T01:CDS
TTGTGCTTAACAGATTATTG+CGG 0.613642 3:-80579063 MsG0380016217.01.T01:intron
AAGATTAGCAAAGGGGAAGG+CGG 0.615958 3:-80577205 MsG0380016217.01.T01:CDS
AAAACGGACAGATAGGTTCG+CGG 0.616408 3:-80581231 MsG0380016217.01.T01:CDS
CTTAAACGATGATGATACAA+AGG 0.617076 3:-80581378 MsG0380016217.01.T01:CDS
TCATACATGAATCTGCAACC+TGG 0.619077 3:+80581059 None:intergenic
TATTTCGTTTGGAAGTCTTG+AGG 0.620552 3:-80578743 MsG0380016217.01.T01:CDS
AAATCCGGGAAGATTAGCAA+AGG 0.624360 3:-80577214 MsG0380016217.01.T01:CDS
TCCTCCTTGGCAACAGAGGT+AGG 0.626834 3:+80579477 None:intergenic
TTAAGACATTGATATTACAA+AGG 0.628780 3:+80577053 None:intergenic
ACAGTATTGAGCATTCTGGA+GGG 0.629176 3:-80579719 MsG0380016217.01.T01:intron
TATGCCAGCAGTTCTACAAG+AGG 0.630430 3:+80579002 None:intergenic
GTCACAACAAATCATGCCAA+CGG 0.639149 3:+80580627 None:intergenic
ACCTACCTCTGTTGCCAAGG+AGG 0.641588 3:-80579478 MsG0380016217.01.T01:CDS
TGACAGACTTCTCATTAAGA+CGG 0.641870 3:+80580596 None:intergenic
AGCTTGAGACGAGATCGGAA+GGG 0.646335 3:+80582309 None:intergenic
GTTTCTTACTCACCTGACCA+GGG 0.649699 3:+80579649 None:intergenic
GGGAAGATTAGCAAAGGGGA+AGG 0.652808 3:-80577208 MsG0380016217.01.T01:CDS
TTGGAGGGCATAATCCCAGT+GGG 0.659819 3:-80579536 MsG0380016217.01.T01:CDS
CCCGAGTTTCGAAAGCAAGT+AGG 0.661360 3:+80577078 None:intergenic
CAGTATTGAGCATTCTGGAG+GGG 0.672798 3:-80579718 MsG0380016217.01.T01:CDS
ATTACCAATACAAGCAACTG+TGG 0.673094 3:+80578963 None:intergenic
CAGGTTCTTGATAATGAAGG+CGG 0.674155 3:-80577267 MsG0380016217.01.T01:CDS
ACCAATACAAGCAACTGTGG+TGG 0.685489 3:+80578966 None:intergenic
AGACATCAAGAAAGGAACTG+TGG 0.690973 3:-80578784 MsG0380016217.01.T01:CDS
ATCCGGGAAGATTAGCAAAG+GGG 0.708488 3:-80577212 MsG0380016217.01.T01:CDS
ATTGGAGGGCATAATCCCAG+TGG 0.710140 3:-80579537 MsG0380016217.01.T01:CDS
ATTCATGTATGATAGGACTG+AGG 0.726348 3:-80581048 MsG0380016217.01.T01:CDS
TTAAACGCTGCAAGTCAAGG+CGG 0.736493 3:+80579688 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATAATTAAAAGTTATAA+CGG - Chr3:80579887-80579906 MsG0380016217.01.T01:intron 10.0%
!! CAATTTAATGAATAAATAAA+AGG + Chr3:80577798-80577817 None:intergenic 10.0%
!!! CATAAATTTGTTTTTTAATA+TGG - Chr3:80579723-80579742 MsG0380016217.01.T01:intron 10.0%
!!! TTTTTAATTTTTTTTCTTAC+TGG + Chr3:80579408-80579427 None:intergenic 10.0%
!! AACATTTATAATGATTTACT+GGG - Chr3:80582185-80582204 MsG0380016217.01.T01:intron 15.0%
!! AAGAAACAAATGATAATTAT+AGG - Chr3:80581476-80581495 MsG0380016217.01.T01:intron 15.0%
!! ATGTATGTATGAAAAATATA+TGG + Chr3:80578937-80578956 None:intergenic 15.0%
!! GAATATAAAAAAAACCATTA+TGG + Chr3:80579131-80579150 None:intergenic 15.0%
!!! ATAATGATTTTAAAGCATTT+AGG - Chr3:80581063-80581082 MsG0380016217.01.T01:CDS 15.0%
!!! ATTAATTGTTGCAAAATTTT+AGG - Chr3:80577113-80577132 MsG0380016217.01.T01:three_prime_UTR 15.0%
!!! ATTTGAAGATTTTGATTATT+CGG - Chr3:80582356-80582375 MsG0380016217.01.T01:intron 15.0%
!!! TTTAACAAATTTGTTTTTGT+TGG - Chr3:80577342-80577361 MsG0380016217.01.T01:intron 15.0%
!! AAAATATTTCCATACAAAGA+TGG + Chr3:80578185-80578204 None:intergenic 20.0%
!! AATTAATGTTGCCTTAATAA+TGG - Chr3:80579291-80579310 MsG0380016217.01.T01:intron 20.0%
!! ATGCATTTACATTTGAATTA+AGG - Chr3:80577578-80577597 MsG0380016217.01.T01:intron 20.0%
!! ATTTCATGCTAAAAAATGTT+TGG + Chr3:80579518-80579537 None:intergenic 20.0%
!! ATTTGCGTAAACTAAAATAA+TGG + Chr3:80580969-80580988 None:intergenic 20.0%
!! GAAAATTTACGATTTGAATT+TGG - Chr3:80577364-80577383 MsG0380016217.01.T01:intron 20.0%
!! GAACATTTATAATGATTTAC+TGG - Chr3:80582184-80582203 MsG0380016217.01.T01:intron 20.0%
!! GAATAATCAAAATCTTCAAA+TGG + Chr3:80582357-80582376 None:intergenic 20.0%
!! TAAGTTAAGATCCATTATTA+AGG + Chr3:80579305-80579324 None:intergenic 20.0%
!! TATCAACAAACAAATGTAAA+GGG + Chr3:80578492-80578511 None:intergenic 20.0%
!! TGATTGATTAATTAAGCAAA+AGG + Chr3:80577060-80577079 None:intergenic 20.0%
!! TGTGAAAGAAGATATTATTA+AGG - Chr3:80577470-80577489 MsG0380016217.01.T01:intron 20.0%
!! TTAAGACATTGATATTACAA+AGG + Chr3:80582425-80582444 None:intergenic 20.0%
!! TTTAACATATGCATTAATTC+TGG - Chr3:80578739-80578758 MsG0380016217.01.T01:intron 20.0%
!! TTTATTGTTGTATCTGTTAA+TGG - Chr3:80577993-80578012 MsG0380016217.01.T01:intron 20.0%
!!! AATTAAAAGTTATAACGGAA+AGG - Chr3:80579892-80579911 MsG0380016217.01.T01:intron 20.0%
!!! AATTGAAGCGTTAATTTTAT+CGG + Chr3:80582330-80582349 None:intergenic 20.0%
!!! AATTTTTAGCGAATAAATAC+TGG - Chr3:80577250-80577269 MsG0380016217.01.T01:CDS 20.0%
!!! ATGTTGAAGGATATTTTTTT+AGG - Chr3:80581402-80581421 MsG0380016217.01.T01:intron 20.0%
!!! TAAAATTAACGCTTCAATTT+TGG - Chr3:80582331-80582350 MsG0380016217.01.T01:CDS 20.0%
!!! TCAGTCTATTTAATTTGATT+AGG - Chr3:80579083-80579102 MsG0380016217.01.T01:intron 20.0%
!!! TTCTTTTTAATCACAATTAG+TGG - Chr3:80580561-80580580 MsG0380016217.01.T01:intron 20.0%
!!! TTTGAAGATTTTGATTATTC+GGG - Chr3:80582357-80582376 MsG0380016217.01.T01:intron 20.0%
!!! TTTTGATGAAATATTTCGTT+TGG - Chr3:80580721-80580740 MsG0380016217.01.T01:intron 20.0%
! AAATTGTCTGTTGTAGTAAA+AGG + Chr3:80580443-80580462 None:intergenic 25.0%
! AACAGAAATACAGTATGTAT+AGG + Chr3:80580367-80580386 None:intergenic 25.0%
! AACATTCCAAAGTAAAACAA+TGG + Chr3:80579160-80579179 None:intergenic 25.0%
! AACTAAGAACAATACTCTTA+GGG - Chr3:80579053-80579072 MsG0380016217.01.T01:CDS 25.0%
! AAGAGCCAATAAGTAAAATT+TGG + Chr3:80578692-80578711 None:intergenic 25.0%
! AATTGTACAAAATGCTGAAA+TGG - Chr3:80577419-80577438 MsG0380016217.01.T01:intron 25.0%
! ACACATTAGCAAACAAAAAA+TGG + Chr3:80580115-80580134 None:intergenic 25.0%
! ACAGAAATACAGTATGTATA+GGG + Chr3:80580366-80580385 None:intergenic 25.0%
! AGAAACTGACATAAATTGAA+AGG + Chr3:80581764-80581783 None:intergenic 25.0%
! AGATACTCTGTGTAAATATT+CGG + Chr3:80577905-80577924 None:intergenic 25.0%
! ATGGATCTTAACTTAAATCT+TGG - Chr3:80579310-80579329 MsG0380016217.01.T01:intron 25.0%
! ATTTACGATTTGAATTTGGA+CGG - Chr3:80577368-80577387 MsG0380016217.01.T01:intron 25.0%
! ATTTCATAACCATATGCTTA+TGG + Chr3:80581309-80581328 None:intergenic 25.0%
! CACATTAGCAAACAAAAAAT+GGG + Chr3:80580114-80580133 None:intergenic 25.0%
! GAAAGAAGATATTATTAAGG+AGG - Chr3:80577473-80577492 MsG0380016217.01.T01:intron 25.0%
! GATAACAATATTACCTTTGT+TGG + Chr3:80581680-80581699 None:intergenic 25.0%
! GCAAGTTCTTCAAATATTAT+CGG - Chr3:80580335-80580354 MsG0380016217.01.T01:intron 25.0%
! GTATCAACAAACAAATGTAA+AGG + Chr3:80578493-80578512 None:intergenic 25.0%
! TATTGACAAATAAGAACTAG+AGG + Chr3:80581351-80581370 None:intergenic 25.0%
! TCTTATCAAATCCAACATAT+TGG + Chr3:80578995-80579014 None:intergenic 25.0%
! TGGATCTTAACTTAAATCTT+GGG - Chr3:80579311-80579330 MsG0380016217.01.T01:intron 25.0%
! TGTTTAGACAAATACTCTTT+AGG - Chr3:80579017-80579036 MsG0380016217.01.T01:CDS 25.0%
! TTAAAAAGAAAGATGTAGAC+TGG + Chr3:80580551-80580570 None:intergenic 25.0%
! TTGTAGAACTTGATTATAGT+GGG - Chr3:80582300-80582319 MsG0380016217.01.T01:CDS 25.0%
! TTTGTAGAACTTGATTATAG+TGG - Chr3:80582299-80582318 MsG0380016217.01.T01:CDS 25.0%
!! ATATAGTGTTGTTGAGTTAA+AGG - Chr3:80578038-80578057 MsG0380016217.01.T01:intron 25.0%
!! ATGCATACTCATAATTTTGA+TGG - Chr3:80578652-80578671 MsG0380016217.01.T01:intron 25.0%
!! ATTTCAGCATTTTGTACAAT+TGG + Chr3:80577420-80577439 None:intergenic 25.0%
!! CACATTTCTATTTTCACTTT+TGG + Chr3:80582048-80582067 None:intergenic 25.0%
!! GAAGATTATGTAGAAAGTAT+GGG - Chr3:80580850-80580869 MsG0380016217.01.T01:intron 25.0%
!! TTGAAAATCAATTTTTCCAC+CGG - Chr3:80579631-80579650 MsG0380016217.01.T01:intron 25.0%
!!! AAATTTTACTTATTGGCTCT+TGG - Chr3:80578691-80578710 MsG0380016217.01.T01:intron 25.0%
!!! AAGTTTTTTGATCAAGGATT+GGG - Chr3:80581526-80581545 MsG0380016217.01.T01:intron 25.0%
!!! ATTGAAGCGTTAATTTTATC+GGG + Chr3:80582329-80582348 None:intergenic 25.0%
!!! TATGGAAATATTTTAGCATC+TGG - Chr3:80578191-80578210 MsG0380016217.01.T01:intron 25.0%
!!! TCTTTTTCAACATCAATTCA+AGG + Chr3:80582451-80582470 None:intergenic 25.0%
!!! TTTGGAATGTTGACTTATTT+AGG - Chr3:80579169-80579188 MsG0380016217.01.T01:intron 25.0%
AAAAACAACCTCAGAGAATT+TGG - Chr3:80577877-80577896 MsG0380016217.01.T01:intron 30.0%
AAAGAAGCAAGCTATTGATA+AGG - Chr3:80580033-80580052 MsG0380016217.01.T01:intron 30.0%
AACCTATGTTTCATACCAAA+GGG + Chr3:80577930-80577949 None:intergenic 30.0%
ACCATATTCTTAACCAACAA+AGG - Chr3:80581664-80581683 MsG0380016217.01.T01:intron 30.0%
AGATTGATGCTATAGAAAAC+CGG - Chr3:80578529-80578548 MsG0380016217.01.T01:intron 30.0%
AGCAGAATATCTTTCACTAT+GGG - Chr3:80581110-80581129 MsG0380016217.01.T01:CDS 30.0%
ATAGGTTGTTGATGCATATT+AGG - Chr3:80577943-80577962 MsG0380016217.01.T01:intron 30.0%
ATTGAATGTTCTTTGCCTAA+GGG - Chr3:80578773-80578792 MsG0380016217.01.T01:CDS 30.0%
CAACATACTGTGTAATAGAA+TGG + Chr3:80581388-80581407 None:intergenic 30.0%
CAACTAAGAACAATACTCTT+AGG - Chr3:80579052-80579071 MsG0380016217.01.T01:CDS 30.0%
CTTAAACGATGATGATACAA+AGG - Chr3:80578097-80578116 MsG0380016217.01.T01:intron 30.0%
GAAACATCGAGTTAAATTGT+AGG - Chr3:80579844-80579863 MsG0380016217.01.T01:intron 30.0%
GACTCCATATTGTAATATCT+GGG - Chr3:80581253-80581272 MsG0380016217.01.T01:CDS 30.0%
GATATTATTAAGGAGGAAAC+TGG - Chr3:80577480-80577499 MsG0380016217.01.T01:intron 30.0%
GGAAGATTATGTAGAAAGTA+TGG - Chr3:80580849-80580868 MsG0380016217.01.T01:intron 30.0%
GGATCTTAACTTAAATCTTG+GGG - Chr3:80579312-80579331 MsG0380016217.01.T01:intron 30.0%
TAAGCCCAGATATTACAATA+TGG + Chr3:80581260-80581279 None:intergenic 30.0%
TAATCACAATTAGTGGCATA+GGG - Chr3:80580568-80580587 MsG0380016217.01.T01:intron 30.0%
TAATCAGAGAGAGTTATCAA+TGG - Chr3:80580081-80580100 MsG0380016217.01.T01:intron 30.0%
TACAAAATGCTGAAATGGAA+GGG - Chr3:80577424-80577443 MsG0380016217.01.T01:intron 30.0%
TACTATCTTTAGTGCATGTT+TGG - Chr3:80579195-80579214 MsG0380016217.01.T01:intron 30.0%
TAGCAGAATATCTTTCACTA+TGG - Chr3:80581109-80581128 MsG0380016217.01.T01:CDS 30.0%
TATTAGTCAAATTTCCCCTT+AGG + Chr3:80578791-80578810 None:intergenic 30.0%
TATTTGAAGAACTTGCAATG+TGG + Chr3:80580331-80580350 None:intergenic 30.0%
TCTATTACACAGTATGTTGA+AGG - Chr3:80581389-80581408 MsG0380016217.01.T01:intron 30.0%
TGAGATTTATCATTACCTGA+AGG + Chr3:80580936-80580955 None:intergenic 30.0%
TGTAGAACTTGATTATAGTG+GGG - Chr3:80582301-80582320 MsG0380016217.01.T01:CDS 30.0%
TTAATCACAATTAGTGGCAT+AGG - Chr3:80580567-80580586 MsG0380016217.01.T01:intron 30.0%
TTCTACATAATCTTCCAACT+GGG + Chr3:80580845-80580864 None:intergenic 30.0%
TTCTTGAACTTGTATCTGTT+GGG - Chr3:80577818-80577837 MsG0380016217.01.T01:intron 30.0%
TTGAAAAGAAAACCAGTAAG+TGG + Chr3:80581451-80581470 None:intergenic 30.0%
TTGTGCTTAACAGATTATTG+CGG - Chr3:80580412-80580431 MsG0380016217.01.T01:intron 30.0%
TTTATAATGATTTACTGGGC+AGG - Chr3:80582189-80582208 MsG0380016217.01.T01:intron 30.0%
TTTCTACATAATCTTCCAAC+TGG + Chr3:80580846-80580865 None:intergenic 30.0%
! AAGCTATAAGAGGTATGTAA+TGG + Chr3:80577708-80577727 None:intergenic 30.0%
! AATTGCATTTTATCTCAGCT+TGG - Chr3:80580644-80580663 MsG0380016217.01.T01:intron 30.0%
! ACCTTTGTTGGTTAAGAATA+TGG + Chr3:80581668-80581687 None:intergenic 30.0%
! AGCTATAAGAGGTATGTAAT+GGG + Chr3:80577707-80577726 None:intergenic 30.0%
! GAGCACCAAATTTTACTTAT+TGG - Chr3:80578684-80578703 MsG0380016217.01.T01:intron 30.0%
! TCACCAATGAACATCTTTTT+CGG + Chr3:80578376-80578395 None:intergenic 30.0%
!! TGTGATCCATTGTTTTACTT+TGG - Chr3:80579151-80579170 MsG0380016217.01.T01:intron 30.0%
!! TGTTGTATGTATTGATTCTC+CGG + Chr3:80579653-80579672 None:intergenic 30.0%
!! TTTGTTATTTCCTGAATCTG+TGG - Chr3:80581501-80581520 MsG0380016217.01.T01:intron 30.0%
!!! GAAGTTTTTTGATCAAGGAT+TGG - Chr3:80581525-80581544 MsG0380016217.01.T01:intron 30.0%
!!! TCTTTTTTCTTTCCACTTAC+TGG - Chr3:80581436-80581455 MsG0380016217.01.T01:intron 30.0%
!!! TGTTTGGTTTTACATTTGAG+AGG - Chr3:80579211-80579230 MsG0380016217.01.T01:intron 30.0%
AAAAACTTCTCCACAGATTC+AGG + Chr3:80581514-80581533 None:intergenic 35.0%
AAAGATGGTGTATCATGCAT+AGG + Chr3:80578170-80578189 None:intergenic 35.0%
AAGCCGAAAAAGATGTTCAT+TGG - Chr3:80578370-80578389 MsG0380016217.01.T01:intron 35.0%
AATCAGAATTCAAGAAAGCC+AGG - Chr3:80576984-80577003 MsG0380016217.01.T01:three_prime_UTR 35.0%
AATCATTATACCTGAACCTG+AGG + Chr3:80581052-80581071 None:intergenic 35.0%
AATGGATGCATTAAACTCAC+CGG + Chr3:80578626-80578645 None:intergenic 35.0%
AATTGAACAGTCACATGTGT+TGG - Chr3:80579435-80579454 MsG0380016217.01.T01:CDS 35.0%
ACATCTTGACGATTATTCGT+TGG + Chr3:80578140-80578159 None:intergenic 35.0%
AGAAAGATGTAGACTGGTAT+AGG + Chr3:80580545-80580564 None:intergenic 35.0%
AGATAGGATGTTACTGAGTT+AGG + Chr3:80580251-80580270 None:intergenic 35.0%
ATCAAACAAGCCATAAGAGT+CGG + Chr3:80581232-80581251 None:intergenic 35.0%
ATCCCTTTGGTATGAAACAT+AGG - Chr3:80577925-80577944 MsG0380016217.01.T01:intron 35.0%
ATGAGTATGCATGAGAGAAA+TGG + Chr3:80578644-80578663 None:intergenic 35.0%
ATTACCAATACAAGCAACTG+TGG + Chr3:80580515-80580534 None:intergenic 35.0%
ATTCATGTATGATAGGACTG+AGG - Chr3:80578427-80578446 MsG0380016217.01.T01:intron 35.0%
ATTTGATATCAGTCAACCTC+AGG - Chr3:80581033-80581052 MsG0380016217.01.T01:intron 35.0%
CAACCTATGTTTCATACCAA+AGG + Chr3:80577931-80577950 None:intergenic 35.0%
CACTTCCTATGATTATTCCT+AGG + Chr3:80580280-80580299 None:intergenic 35.0%
CATGATACACCATCTTTGTA+TGG - Chr3:80578173-80578192 MsG0380016217.01.T01:intron 35.0%
CATTGAATGTTCTTTGCCTA+AGG - Chr3:80578772-80578791 MsG0380016217.01.T01:CDS 35.0%
CCTAAAAAACTGCAGATTCT+CGG + Chr3:80577625-80577644 None:intergenic 35.0%
GCATATTAGGATAGACTACT+AGG - Chr3:80577956-80577975 MsG0380016217.01.T01:intron 35.0%
GGACTCCATATTGTAATATC+TGG - Chr3:80581252-80581271 MsG0380016217.01.T01:CDS 35.0%
GGGAAGCTTATTATCTTAAC+AGG - Chr3:80577189-80577208 MsG0380016217.01.T01:CDS 35.0%
GGGTGTTCAGAATCAATAAA+TGG + Chr3:80580671-80580690 None:intergenic 35.0%
GGTTTGCATCTTTATTCCAT+CGG - Chr3:80577501-80577520 MsG0380016217.01.T01:intron 35.0%
GTACAAAATGCTGAAATGGA+AGG - Chr3:80577423-80577442 MsG0380016217.01.T01:intron 35.0%
GTAGAACTTGATTATAGTGG+GGG - Chr3:80582302-80582321 MsG0380016217.01.T01:CDS 35.0%
GTTCTTGAACTTGTATCTGT+TGG - Chr3:80577817-80577836 MsG0380016217.01.T01:intron 35.0%
GTTGCAGATTCATGTATGAT+AGG - Chr3:80578420-80578439 MsG0380016217.01.T01:intron 35.0%
TATTTCGTTTGGAAGTCTTG+AGG - Chr3:80580732-80580751 MsG0380016217.01.T01:intron 35.0%
TCCAACATATTGGCAATAGA+TGG + Chr3:80578985-80579004 None:intergenic 35.0%
TCCATCTATTGCCAATATGT+TGG - Chr3:80578981-80579000 MsG0380016217.01.T01:CDS 35.0%
TCTTGATAGGTAGTTGGAAT+TGG - Chr3:80579920-80579939 MsG0380016217.01.T01:intron 35.0%
TGACAGACTTCTCATTAAGA+CGG + Chr3:80578882-80578901 None:intergenic 35.0%
TGATGAAAATCCTTGTATGC+AGG - Chr3:80578072-80578091 MsG0380016217.01.T01:intron 35.0%
TGATTACAAAGCAGTTCAGT+TGG + Chr3:80580067-80580086 None:intergenic 35.0%
TTACATTTCTACATCTCCGA+TGG + Chr3:80577520-80577539 None:intergenic 35.0%
TTCTCCTTGTACCATCTATA+CGG - Chr3:80580887-80580906 MsG0380016217.01.T01:intron 35.0%
TTGAATGTTCTTTGCCTAAG+GGG - Chr3:80578774-80578793 MsG0380016217.01.T01:CDS 35.0%
TTGCCTAGTTGCATCTAAAT+TGG - Chr3:80579964-80579983 MsG0380016217.01.T01:intron 35.0%
TTTCTATCCACTTTATCCAC+CGG - Chr3:80581779-80581798 MsG0380016217.01.T01:intron 35.0%
! AGATGTTCATTGGTGATTCA+TGG - Chr3:80578380-80578399 MsG0380016217.01.T01:intron 35.0%
! ATGTGCAGAATTTAGTTTCC+AGG + Chr3:80580141-80580160 None:intergenic 35.0%
! GTTTGTTGATACCTGATTAC+TGG - Chr3:80578501-80578520 MsG0380016217.01.T01:intron 35.0%
! TAGGTCTTATGTCAACTCAA+GGG - Chr3:80579102-80579121 MsG0380016217.01.T01:intron 35.0%
! TGGTTACACCCTTTTCAAAA+CGG - Chr3:80578228-80578247 MsG0380016217.01.T01:intron 35.0%
! TGTTTGCTAATGTGTTATCC+TGG - Chr3:80580120-80580139 MsG0380016217.01.T01:intron 35.0%
! TGTTTTCCATTTTCTACGTC+AGG + Chr3:80578293-80578312 None:intergenic 35.0%
! TTAGGTCTTATGTCAACTCA+AGG - Chr3:80579101-80579120 MsG0380016217.01.T01:intron 35.0%
!! GCTCTTGCATGTTTTTAATC+CGG + Chr3:80578551-80578570 None:intergenic 35.0%
!! TCAATAGCTTGCTTCTTTGA+AGG + Chr3:80580031-80580050 None:intergenic 35.0%
!! TTTTGGATAACCGACTCTTA+TGG - Chr3:80581219-80581238 MsG0380016217.01.T01:CDS 35.0%
!!! CTAGCAGAATTTTTTGCAGA+AGG + Chr3:80577765-80577784 None:intergenic 35.0%
!!! CTATCTGTCCGTTTTGAAAA+GGG + Chr3:80578239-80578258 None:intergenic 35.0%
!!! GCAAATGAGGTATTGCATTT+TGG - Chr3:80581202-80581221 MsG0380016217.01.T01:CDS 35.0%
!!! GTGGAGAAGTTTTTTGATCA+AGG - Chr3:80581520-80581539 MsG0380016217.01.T01:intron 35.0%
!!! TATTTTAGCATCTGGAAAGC+CGG - Chr3:80578199-80578218 MsG0380016217.01.T01:intron 35.0%
AAATCCGGGAAGATTAGCAA+AGG - Chr3:80582261-80582280 MsG0380016217.01.T01:intron 40.0%
AAATGCATTGCCGTAAATCC+GGG - Chr3:80582247-80582266 MsG0380016217.01.T01:intron 40.0%
AAGTCTACTCAAGCGATCAA+TGG + Chr3:80581640-80581659 None:intergenic 40.0%
AATCCGGGAAGATTAGCAAA+GGG - Chr3:80582262-80582281 MsG0380016217.01.T01:intron 40.0%
ACAGTGATGCAAGCTATAAG+AGG + Chr3:80577718-80577737 None:intergenic 40.0%
ACAGTTCCTTTCTTGATGTC+TGG + Chr3:80580692-80580711 None:intergenic 40.0%
ACCATACCTGACGTAGAAAA+TGG - Chr3:80578284-80578303 MsG0380016217.01.T01:intron 40.0%
ACCTACTTGCTTTCGAAACT+CGG - Chr3:80582396-80582415 MsG0380016217.01.T01:intron 40.0%
AGACATCAAGAAAGGAACTG+TGG - Chr3:80580691-80580710 MsG0380016217.01.T01:intron 40.0%
AGTCTACTCAAGCGATCAAT+GGG + Chr3:80581639-80581658 None:intergenic 40.0%
ATCTGAACCAGTGATGTTGA+GGG + Chr3:80581842-80581861 None:intergenic 40.0%
ATGAATCTGCAACCTGGTTT+CGG + Chr3:80578413-80578432 None:intergenic 40.0%
ATGTAATATGCCTGTGAGCA+GGG - Chr3:80582121-80582140 MsG0380016217.01.T01:intron 40.0%
CAATCTACATGCCAGTAATC+AGG + Chr3:80578515-80578534 None:intergenic 40.0%
CAGAATGCTCAATACTGTTG+AGG + Chr3:80579754-80579773 None:intergenic 40.0%
CAGTTCCTTTCTTGATGTCT+GGG + Chr3:80580691-80580710 None:intergenic 40.0%
CATATCCATTGTCTCTTCTC+AGG - Chr3:80578954-80578973 MsG0380016217.01.T01:intron 40.0%
CCACCAATTTAGATGCAACT+AGG + Chr3:80579970-80579989 None:intergenic 40.0%
CCTAGTTGCATCTAAATTGG+TGG - Chr3:80579967-80579986 MsG0380016217.01.T01:intron 40.0%
CTTGCATCACTGTGTAAATG+TGG - Chr3:80577725-80577744 MsG0380016217.01.T01:intron 40.0%
GAAATGCATTGCCGTAAATC+CGG - Chr3:80582246-80582265 MsG0380016217.01.T01:intron 40.0%
GACCAGGGAAAACTGAATAA+TGG + Chr3:80579814-80579833 None:intergenic 40.0%
GATAGGTAGTTGGAATTGGA+GGG - Chr3:80579924-80579943 MsG0380016217.01.T01:intron 40.0%
GATGTTCTCAAACAGATCAG+TGG - Chr3:80581579-80581598 MsG0380016217.01.T01:intron 40.0%
GCTTATCTAGACGAAAAACC+TGG - Chr3:80581275-80581294 MsG0380016217.01.T01:CDS 40.0%
GCTTCATCTTGATAGGTAGT+TGG - Chr3:80579914-80579933 MsG0380016217.01.T01:intron 40.0%
GGTTGACTGATATCAAATGC+AGG + Chr3:80581031-80581050 None:intergenic 40.0%
GTATGATAGGACTGAGGATA+AGG - Chr3:80578433-80578452 MsG0380016217.01.T01:intron 40.0%
GTCACAACAAATCATGCCAA+CGG + Chr3:80578851-80578870 None:intergenic 40.0%
GTGTGAATGCTTCATAGGTT+TGG + Chr3:80579353-80579372 None:intergenic 40.0%
TAGACCTTGACAAGTACTTG+AGG + Chr3:80581885-80581904 None:intergenic 40.0%
TCATACATGAATCTGCAACC+TGG + Chr3:80578419-80578438 None:intergenic 40.0%
TCTCCTTGTACCATCTATAC+GGG - Chr3:80580888-80580907 MsG0380016217.01.T01:intron 40.0%
TGAAGGATTCAAATCCTCCT+TGG + Chr3:80580014-80580033 None:intergenic 40.0%
TGATAGGTAGTTGGAATTGG+AGG - Chr3:80579923-80579942 MsG0380016217.01.T01:intron 40.0%
TGCTAATCTTCCCGGATTTA+CGG + Chr3:80582260-80582279 None:intergenic 40.0%
TGTCTGTGTGAATGCTTCAT+AGG + Chr3:80579358-80579377 None:intergenic 40.0%
TTCTTCTTCGAAATCGAACC+TGG + Chr3:80577005-80577024 None:intergenic 40.0%
TTGATCAAGGATTGGGTTTC+AGG - Chr3:80581533-80581552 MsG0380016217.01.T01:intron 40.0%
TTGTATCTGTTGGGTCGTAA+AGG - Chr3:80577827-80577846 MsG0380016217.01.T01:intron 40.0%
! AACAGTATTGAGCATTCTGG+AGG - Chr3:80579755-80579774 MsG0380016217.01.T01:intron 40.0%
! ACACAGAGTATCTATCCCTT+TGG - Chr3:80577912-80577931 MsG0380016217.01.T01:intron 40.0%
! ACAGTATTGAGCATTCTGGA+GGG - Chr3:80579756-80579775 MsG0380016217.01.T01:intron 40.0%
! AGCCATTATTCAGTTTTCCC+TGG - Chr3:80579809-80579828 MsG0380016217.01.T01:intron 40.0%
! ATTGGGTTTCAGGTCAAAGT+TGG - Chr3:80581543-80581562 MsG0380016217.01.T01:intron 40.0%
! CATTGGTGATTCATGGATCA+GGG - Chr3:80578387-80578406 MsG0380016217.01.T01:intron 40.0%
! CCTTTTCAAAACGGACAGAT+AGG - Chr3:80578237-80578256 MsG0380016217.01.T01:intron 40.0%
! CGTTTAAGATCCTGCATACA+AGG + Chr3:80578085-80578104 None:intergenic 40.0%
! CTCAACAGTATTGAGCATTC+TGG - Chr3:80579752-80579771 MsG0380016217.01.T01:intron 40.0%
! GCTAGCCTAGGAATAATCAT+AGG - Chr3:80580272-80580291 MsG0380016217.01.T01:intron 40.0%
! TATTCCTAGGCTAGCTAGAT+AGG + Chr3:80580267-80580286 None:intergenic 40.0%
! TCATTGGTGATTCATGGATC+AGG - Chr3:80578386-80578405 MsG0380016217.01.T01:intron 40.0%
! TCCATTTTCTACGTCAGGTA+TGG + Chr3:80578288-80578307 None:intergenic 40.0%
! TTATTCAGTTTTCCCTGGTC+AGG - Chr3:80579814-80579833 MsG0380016217.01.T01:intron 40.0%
!! ACATGTGTTGGTGTTGTGTT+TGG - Chr3:80579447-80579466 MsG0380016217.01.T01:CDS 40.0%
!! ATGATTTGTTGTGACGGAGA+AGG - Chr3:80578856-80578875 MsG0380016217.01.T01:intron 40.0%
!! CAGGTTCTTGATAATGAAGG+CGG - Chr3:80582208-80582227 MsG0380016217.01.T01:intron 40.0%
!! GACTCTTATGGCTTGTTTGA+TGG - Chr3:80581231-80581250 MsG0380016217.01.T01:CDS 40.0%
!! GTTGGCATGATTTGTTGTGA+CGG - Chr3:80578850-80578869 MsG0380016217.01.T01:intron 40.0%
!! TGTATGTATTGATTCTCCGG+TGG + Chr3:80579650-80579669 None:intergenic 40.0%
!! TGTTGGTGTTGTGTTTGGTT+GGG - Chr3:80579452-80579471 MsG0380016217.01.T01:CDS 40.0%
!!! CAGAGAAGCTTTTTTTCCGT+TGG - Chr3:80578832-80578851 MsG0380016217.01.T01:intron 40.0%
!!! CCGAGAATCTGCAGTTTTTT+AGG - Chr3:80577622-80577641 MsG0380016217.01.T01:intron 40.0%
!!! CCTATCTGTCCGTTTTGAAA+AGG + Chr3:80578240-80578259 None:intergenic 40.0%
!!! GCAGAATTTTTTGCAGAAGG+CGG + Chr3:80577762-80577781 None:intergenic 40.0%
AAAACGGACAGATAGGTTCG+CGG - Chr3:80578244-80578263 MsG0380016217.01.T01:intron 45.0%
AAGATTAGCAAAGGGGAAGG+CGG - Chr3:80582270-80582289 MsG0380016217.01.T01:intron 45.0%
AAGGTGGAGGTTAGAACTTG+GGG + Chr3:80580807-80580826 None:intergenic 45.0%
ACCAATACAAGCAACTGTGG+TGG + Chr3:80580512-80580531 None:intergenic 45.0%
ACCACCACAGTTGCTTGTAT+TGG - Chr3:80580508-80580527 MsG0380016217.01.T01:intron 45.0%
ACGATTATTCGTTGGTGTGC+TGG + Chr3:80578132-80578151 None:intergenic 45.0%
ATAGCCAGTCTCACTAATCC+TGG - Chr3:80581169-80581188 MsG0380016217.01.T01:CDS 45.0%
ATCCGGGAAGATTAGCAAAG+GGG - Chr3:80582263-80582282 MsG0380016217.01.T01:intron 45.0%
ATCGACCTGAGAAGAGACAA+TGG + Chr3:80578962-80578981 None:intergenic 45.0%
ATGCATTAAACTCACCGGTG+AGG + Chr3:80578621-80578640 None:intergenic 45.0%
CAACTCAAGGGATGCCATAA+TGG - Chr3:80579114-80579133 MsG0380016217.01.T01:intron 45.0%
CAAGAAAGGAACTGTGGACA+GGG - Chr3:80580697-80580716 MsG0380016217.01.T01:intron 45.0%
CAAGGTGGAGGTTAGAACTT+GGG + Chr3:80580808-80580827 None:intergenic 45.0%
CACTAATCCTGGAATCTTCG+AGG - Chr3:80581180-80581199 MsG0380016217.01.T01:CDS 45.0%
CAGACCTCAAGTACTTGTCA+AGG - Chr3:80581878-80581897 MsG0380016217.01.T01:intron 45.0%
CATCCCGTATAGATGGTACA+AGG + Chr3:80580894-80580913 None:intergenic 45.0%
CATCTGAACCAGTGATGTTG+AGG + Chr3:80581843-80581862 None:intergenic 45.0%
CATGTAATATGCCTGTGAGC+AGG - Chr3:80582120-80582139 MsG0380016217.01.T01:intron 45.0%
CCTACTTGCTTTCGAAACTC+GGG - Chr3:80582397-80582416 MsG0380016217.01.T01:intron 45.0%
CGATTATTCGTTGGTGTGCT+GGG + Chr3:80578131-80578150 None:intergenic 45.0%
CGGAAAGGCTTCATCTTGAT+AGG - Chr3:80579907-80579926 MsG0380016217.01.T01:intron 45.0%
GAACACCCAGACATCAAGAA+AGG - Chr3:80580683-80580702 MsG0380016217.01.T01:intron 45.0%
GACAAGTACTTGAGGTCTGA+AGG + Chr3:80581877-80581896 None:intergenic 45.0%
GCTTAACAGATTATTGCGGC+TGG - Chr3:80580416-80580435 MsG0380016217.01.T01:intron 45.0%
GGTGATATTTGACAGACAGC+TGG - Chr3:80577389-80577408 MsG0380016217.01.T01:intron 45.0%
GTTTCTTACTCACCTGACCA+GGG + Chr3:80579829-80579848 None:intergenic 45.0%
TATACCTACCTCTGTTGCCA+AGG - Chr3:80579994-80580013 MsG0380016217.01.T01:intron 45.0%
TATCAGTCAACCTCAGGTTC+AGG - Chr3:80581039-80581058 MsG0380016217.01.T01:intron 45.0%
TATGCCAGCAGTTCTACAAG+AGG + Chr3:80580476-80580495 None:intergenic 45.0%
TCAAGAAAGGAACTGTGGAC+AGG - Chr3:80580696-80580715 MsG0380016217.01.T01:intron 45.0%
TCAAGGTGGAGGTTAGAACT+TGG + Chr3:80580809-80580828 None:intergenic 45.0%
TCATTTGCCTCGAAGATTCC+AGG + Chr3:80581190-80581209 None:intergenic 45.0%
TCGTTTGGAAGTCTTGAGGA+AGG - Chr3:80580736-80580755 MsG0380016217.01.T01:intron 45.0%
TCTCAAACAGATCAGTGGAG+AGG - Chr3:80581584-80581603 MsG0380016217.01.T01:intron 45.0%
TCTGGCGCAGAGAAAATTCA+AGG + Chr3:80581817-80581836 None:intergenic 45.0%
TGGAATCTTCGAGGCAAATG+AGG - Chr3:80581189-80581208 MsG0380016217.01.T01:CDS 45.0%
TGGTTAGCATCCCGTATAGA+TGG + Chr3:80580901-80580920 None:intergenic 45.0%
TGTTTCTTACTCACCTGACC+AGG + Chr3:80579830-80579849 None:intergenic 45.0%
TTAAACGCTGCAAGTCAAGG+CGG + Chr3:80579790-80579809 None:intergenic 45.0%
TTCAAGGTAACACTTTCCGC+CGG + Chr3:80581801-80581820 None:intergenic 45.0%
TTCCCCTTTGCTAATCTTCC+CGG + Chr3:80582268-80582287 None:intergenic 45.0%
! ACATCCTATCTAGCTAGCCT+AGG - Chr3:80580260-80580279 MsG0380016217.01.T01:intron 45.0%
! CAAAGTTGGTTGCTGCACTT+TGG - Chr3:80581557-80581576 MsG0380016217.01.T01:intron 45.0%
! CAGTATTGAGCATTCTGGAG+GGG - Chr3:80579757-80579776 MsG0380016217.01.T01:intron 45.0%
! GATTCCAGGATTAGTGAGAC+TGG + Chr3:80581176-80581195 None:intergenic 45.0%
!! ATTCGGTGCCAAATTCTCTG+AGG + Chr3:80577888-80577907 None:intergenic 45.0%
!! GGGCAGGTTCTTGATAATGA+AGG - Chr3:80582205-80582224 MsG0380016217.01.T01:intron 45.0%
!! GTGTTGGTGTTGTGTTTGGT+TGG - Chr3:80579451-80579470 MsG0380016217.01.T01:CDS 45.0%
!!! ATTTATTTCAAAATTTTATT+TGG + Chr3:80579608-80579627 None:intergenic 5.0%
AGACCCTTCAATTGCCTCAC+CGG - Chr3:80578604-80578623 MsG0380016217.01.T01:CDS 50.0%
AGCTTGAGACGAGATCGGAA+GGG + Chr3:80577169-80577188 None:intergenic 50.0%
AGTCTGTCATGTTGCAGAGC+AGG - Chr3:80578893-80578912 MsG0380016217.01.T01:intron 50.0%
CAAATCCTCCTTGGCAACAG+AGG + Chr3:80580005-80580024 None:intergenic 50.0%
CCCGAGTTTCGAAAGCAAGT+AGG + Chr3:80582400-80582419 None:intergenic 50.0%
CTATCCACTTTATCCACCGG+CGG - Chr3:80581782-80581801 MsG0380016217.01.T01:intron 50.0%
GAACAGCAAGTGCATCAAGG+TGG + Chr3:80580823-80580842 None:intergenic 50.0%
GAGGCAATTGAAGGGTCTGT+TGG + Chr3:80578602-80578621 None:intergenic 50.0%
GCTGACACGCCATAAGCATA+TGG - Chr3:80581297-80581316 MsG0380016217.01.T01:CDS 50.0%
GGCTTAAACGCTGCAAGTCA+AGG + Chr3:80579793-80579812 None:intergenic 50.0%
GGGAAGATTAGCAAAGGGGA+AGG - Chr3:80582267-80582286 MsG0380016217.01.T01:intron 50.0%
TCACCGGTGAGGCAATTGAA+GGG + Chr3:80578610-80578629 None:intergenic 50.0%
TGAGCCTCTTGTAGAACTGC+TGG - Chr3:80580469-80580488 MsG0380016217.01.T01:intron 50.0%
TGGGAACAGCAAGTGCATCA+AGG + Chr3:80580826-80580845 None:intergenic 50.0%
TGGTTCTTCATAGAGCCCAG+AGG + Chr3:80578582-80578601 None:intergenic 50.0%
TGTTGTGTTTGGTTGGGCAC+CGG - Chr3:80579458-80579477 MsG0380016217.01.T01:CDS 50.0%
TTCCCAGCTTGAGACGAGAT+CGG + Chr3:80577174-80577193 None:intergenic 50.0%
TTCCGATCTCGTCTCAAGCT+GGG - Chr3:80577169-80577188 MsG0380016217.01.T01:exon 50.0%
! AAGGGTGTAACCAGATCAGC+CGG + Chr3:80578221-80578240 None:intergenic 50.0%
! ATTGGAGGGCATAATCCCAG+TGG - Chr3:80579938-80579957 MsG0380016217.01.T01:intron 50.0%
! TTGGAGGGCATAATCCCAGT+GGG - Chr3:80579939-80579958 MsG0380016217.01.T01:intron 50.0%
!! ATGCACTTGCTGTTCCCAGT+TGG - Chr3:80580828-80580847 MsG0380016217.01.T01:intron 50.0%
!! CAAGAGCACTTGTAGCCTCT+GGG - Chr3:80578564-80578583 MsG0380016217.01.T01:CDS 50.0%
!! CTCTGTAGCACCGACTCTTA+CGG + Chr3:80579493-80579512 None:intergenic 50.0%
AAGGTAACACTTTCCGCCGG+TGG + Chr3:80581798-80581817 None:intergenic 55.0%
ACCTACCTCTGTTGCCAAGG+AGG - Chr3:80579997-80580016 MsG0380016217.01.T01:intron 55.0%
ATCTGGAAAGCCGGCTGATC+TGG - Chr3:80578208-80578227 MsG0380016217.01.T01:intron 55.0%
ATGCTTATGGCGTGTCAGCC+AGG + Chr3:80581296-80581315 None:intergenic 55.0%
ATTAGCAAAGGGGAAGGCGG+AGG - Chr3:80582273-80582292 MsG0380016217.01.T01:intron 55.0%
CAGCAAGTGCATCAAGGTGG+AGG + Chr3:80580820-80580839 None:intergenic 55.0%
CAGCTTGAGACGAGATCGGA+AGG + Chr3:80577170-80577189 None:intergenic 55.0%
CCAGAAGCCCTCAACATCAC+TGG - Chr3:80581832-80581851 MsG0380016217.01.T01:intron 55.0%
CCAGTGATGTTGAGGGCTTC+TGG + Chr3:80581835-80581854 None:intergenic 55.0%
CTCACCGGTGAGGCAATTGA+AGG + Chr3:80578611-80578630 None:intergenic 55.0%
CTTCCGATCTCGTCTCAAGC+TGG - Chr3:80577168-80577187 MsG0380016217.01.T01:exon 55.0%
CTTTCCGCCGGTGGATAAAG+TGG + Chr3:80581789-80581808 None:intergenic 55.0%
GACACGCCTTCCGTAAGAGT+CGG - Chr3:80579480-80579499 MsG0380016217.01.T01:CDS 55.0%
GCAACTAGGCAATGCCCACT+GGG + Chr3:80579956-80579975 None:intergenic 55.0%
GCTTGAGACGAGATCGGAAG+GGG + Chr3:80577168-80577187 None:intergenic 55.0%
GTCCCAATGTGATGATCCCC+CGG + Chr3:80577857-80577876 None:intergenic 55.0%
GTGTCAACGTGTCAGTGTCG+TGG + Chr3:80579386-80579405 None:intergenic 55.0%
GTTGGGTCGTAAAGGAAGCC+CGG - Chr3:80577835-80577854 MsG0380016217.01.T01:intron 55.0%
TCCCAATGTGATGATCCCCC+GGG + Chr3:80577856-80577875 None:intergenic 55.0%
TCCTCCTTGGCAACAGAGGT+AGG + Chr3:80580001-80580020 None:intergenic 55.0%
TGCAACTAGGCAATGCCCAC+TGG + Chr3:80579957-80579976 None:intergenic 55.0%
TTGGGTCGTAAAGGAAGCCC+GGG - Chr3:80577836-80577855 MsG0380016217.01.T01:intron 55.0%
! ACTCTTACGGAAGGCGTGTC+CGG + Chr3:80579480-80579499 None:intergenic 55.0%
!! GCAAGAGCACTTGTAGCCTC+TGG - Chr3:80578563-80578582 MsG0380016217.01.T01:CDS 55.0%
!! GTAGCACCGACTCTTACGGA+AGG + Chr3:80579489-80579508 None:intergenic 55.0%
AGCCCGGGGGATCATCACAT+TGG - Chr3:80577851-80577870 MsG0380016217.01.T01:intron 60.0%
CATGGATCAGGGCCGAAACC+AGG - Chr3:80578398-80578417 MsG0380016217.01.T01:intron 60.0%
GCCCGGGGGATCATCACATT+GGG - Chr3:80577852-80577871 MsG0380016217.01.T01:intron 60.0%
TGGGTCGTAAAGGAAGCCCG+GGG - Chr3:80577837-80577856 MsG0380016217.01.T01:intron 60.0%
TGTTCAGCGACCCTGCTCAC+AGG + Chr3:80582134-80582153 None:intergenic 60.0%
GGGTCGTAAAGGAAGCCCGG+GGG - Chr3:80577838-80577857 MsG0380016217.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 80576937 80582560 80576937 ID=MsG0380016217.01;Name=MsG0380016217.01
Chr3 mRNA 80576937 80582560 80576937 ID=MsG0380016217.01.T01;Parent=MsG0380016217.01;Name=MsG0380016217.01.T01;_AED=0.35;_eAED=0.35;_QI=31|0.72|1|1|1|1|12|248|470
Chr3 exon 80576937 80577286 80576937 ID=MsG0380016217.01.T01:exon:32855;Parent=MsG0380016217.01.T01
Chr3 exon 80578287 80578328 80578287 ID=MsG0380016217.01.T01:exon:32854;Parent=MsG0380016217.01.T01
Chr3 exon 80578558 80578650 80578558 ID=MsG0380016217.01.T01:exon:32853;Parent=MsG0380016217.01.T01
Chr3 exon 80578740 80578835 80578740 ID=MsG0380016217.01.T01:exon:32852;Parent=MsG0380016217.01.T01
Chr3 exon 80578968 80579072 80578968 ID=MsG0380016217.01.T01:exon:32851;Parent=MsG0380016217.01.T01
Chr3 exon 80579395 80579568 80579395 ID=MsG0380016217.01.T01:exon:32850;Parent=MsG0380016217.01.T01
Chr3 exon 80579662 80579737 80579662 ID=MsG0380016217.01.T01:exon:32849;Parent=MsG0380016217.01.T01
Chr3 exon 80580583 80580662 80580583 ID=MsG0380016217.01.T01:exon:32848;Parent=MsG0380016217.01.T01
Chr3 exon 80581043 80581403 80581043 ID=MsG0380016217.01.T01:exon:32847;Parent=MsG0380016217.01.T01
Chr3 exon 80581962 80582093 80581962 ID=MsG0380016217.01.T01:exon:32846;Parent=MsG0380016217.01.T01
Chr3 exon 80582287 80582362 80582287 ID=MsG0380016217.01.T01:exon:32845;Parent=MsG0380016217.01.T01
Chr3 exon 80582454 80582560 80582454 ID=MsG0380016217.01.T01:exon:32844;Parent=MsG0380016217.01.T01
Chr3 five_prime_UTR 80582530 80582560 80582530 ID=MsG0380016217.01.T01:five_prime_utr;Parent=MsG0380016217.01.T01
Chr3 CDS 80582454 80582529 80582454 ID=MsG0380016217.01.T01:cds;Parent=MsG0380016217.01.T01
Chr3 CDS 80582287 80582362 80582287 ID=MsG0380016217.01.T01:cds;Parent=MsG0380016217.01.T01
Chr3 CDS 80581962 80582093 80581962 ID=MsG0380016217.01.T01:cds;Parent=MsG0380016217.01.T01
Chr3 CDS 80581043 80581403 80581043 ID=MsG0380016217.01.T01:cds;Parent=MsG0380016217.01.T01
Chr3 CDS 80580583 80580662 80580583 ID=MsG0380016217.01.T01:cds;Parent=MsG0380016217.01.T01
Chr3 CDS 80579662 80579737 80579662 ID=MsG0380016217.01.T01:cds;Parent=MsG0380016217.01.T01
Chr3 CDS 80579395 80579568 80579395 ID=MsG0380016217.01.T01:cds;Parent=MsG0380016217.01.T01
Chr3 CDS 80578968 80579072 80578968 ID=MsG0380016217.01.T01:cds;Parent=MsG0380016217.01.T01
Chr3 CDS 80578740 80578835 80578740 ID=MsG0380016217.01.T01:cds;Parent=MsG0380016217.01.T01
Chr3 CDS 80578558 80578650 80578558 ID=MsG0380016217.01.T01:cds;Parent=MsG0380016217.01.T01
Chr3 CDS 80578287 80578328 80578287 ID=MsG0380016217.01.T01:cds;Parent=MsG0380016217.01.T01
Chr3 CDS 80577185 80577286 80577185 ID=MsG0380016217.01.T01:cds;Parent=MsG0380016217.01.T01
Chr3 three_prime_UTR 80576937 80577184 80576937 ID=MsG0380016217.01.T01:three_prime_utr;Parent=MsG0380016217.01.T01
Gene Sequence

>MsG0380016217.01.T01

ATGAAAGAAGAAATCAAATCAGAATTCAAGAAAGCCAGGTTCGATTTCGAAGAAGAAGAAGAGATTCTCAGCAAATGTCTCACTTTTTGCGTCAACTACAGTCTCACCCCTTCCGATCTCGTCTCAAGCTGGGAAGCTTATTATCTTAACAGACAGCTGGATGAACCAATTGTACAAAATGCTGAAATGGAAGGGTTTCTGTTGCATCTGCAAAATAATGTGAAAGAAGATATTATTAAGGAGGAAACTGGTTTGCATCTTTATTCCATCGGAGATGTAGAAATGATCTTAAACGATGATGATACAAAGGACGATACTCCCAGCACACCAACGAATAATCGTCAAGATGTTTATTCGCCTATGCATGATACACCATCTTTGTATGGAAATATTTTAGCATCTGGAAAGCCGGCTGATCTGGTTACACCCTTTTCAAAACGGACAGATAGGTTCGCGGTGAAGTTCAGCATCAATACCATACCTGACGTAGAAAATGGAAAACAAGAACTTAATCACGAGAATGAAGAGAATGACGAGTACAATATTGTTTCGAAAATTGTAAGCCGAAAAAGATGTTCATTGGTGATTCATGGATCAGGGCCGAAACCAGGTTGCAGATTCATGTATGATAGGACTGAGGATAAGAGAAGCTTTTTTTCCGTTGGCATGATTTGTTGTGACGGAGAAGGCCGTCTTAATGAGAAGTCTGTCATGTTGCAGAGCAGTATTGAGCATTCTGGAGGGGAATGTGTCCGCCTTGACTTGCAGCGTTTAAGCCATTATTCAGTTTTCCCTGGTCAGGTAGTTGGAATTGGAGGGCATAATCCCAGTGGGCATTGCCTAGTTGCATCTAAATTGGTGGATTATATACCTACCTCTGTTGCCAAGGAGGATTTGAATCCTTCAAAGAAGCAAGCTATTGATAAGGAGAATCAGCCAACTGAACTGCTTTGTAATCAGAGAGAGTTATCAATGATTATTGCGGCTGGTCCTTTTACTACAACAGACAATTTGTTTTTTGAGCCTCTTGTAGAACTGCTGGCATATGCAAAGCGAAGACCACCACAGTTGCTTGTATTGCTTGGACCATTTATTGATTCTGAACACCCAGACATCAAGAAAGGAACTGTGGACAGGGATTTTGATGAAATATTTCGTTTGGAAGTCTTGAGGAAGTTGGAAGATTATGTAGAAAGTATGGGTTCAACAGTACGTGTTCTCCTTGTACCATCTATACGGGATGCTAACCATGATTTTGTTTTTCCTCAGATAGCCAGTCTCACTAATCCTGGAATCTTCGAGGCAAATGAGGTTCTTGATAATGAAGGCGGAAGAGACAACAGCATGAAATGCATTGCCGTAAATCCGGGAAGATTAGCAAAGGGGAAGGCGGAGGCACTTTGTAGAACTTGA

Protein sequence

>MsG0380016217.01.T01

MKEEIKSEFKKARFDFEEEEEILSKCLTFCVNYSLTPSDLVSSWEAYYLNRQLDEPIVQNAEMEGFLLHLQNNVKEDIIKEETGLHLYSIGDVEMILNDDDTKDDTPSTPTNNRQDVYSPMHDTPSLYGNILASGKPADLVTPFSKRTDRFAVKFSINTIPDVENGKQELNHENEENDEYNIVSKIVSRKRCSLVIHGSGPKPGCRFMYDRTEDKRSFFSVGMICCDGEGRLNEKSVMLQSSIEHSGGECVRLDLQRLSHYSVFPGQVVGIGGHNPSGHCLVASKLVDYIPTSVAKEDLNPSKKQAIDKENQPTELLCNQRELSMIIAAGPFTTTDNLFFEPLVELLAYAKRRPPQLLVLLGPFIDSEHPDIKKGTVDRDFDEIFRLEVLRKLEDYVESMGSTVRVLLVPSIRDANHDFVFPQIASLTNPGIFEANEVLDNEGGRDNSMKCIAVNPGRLAKGKAEALCRT*