AlfalfaGEDB | MsG0380016217.01

M. sativa cultivar ZhongmuNo.1 / MsG0380016217.01

KEGG: K02321
GO: GO:0003677 GO:0003887 GO:0006260
PFAM: PF04042 PF08418

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016217.01.T01	TKY47740.1	73.415	489	79	6	1	438	1	489	0	719

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016217.01.T01	Q58D13	34.975	203	113	3	221	423	256	439	1.14E-33	137

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016217.01.T01	G7JC29	88.981	481	10	2	1	438	1	481	0.0	866

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048289.01	MsG0380016217.01	0.828513	8.624652e-55	8.591358e-52
MsG0080048775.01	MsG0380016217.01	0.865226	6.884102e-65	2.222920e-61
MsG0080048781.01	MsG0380016217.01	0.866555	2.618169e-65	8.861456e-62
MsG0080048956.01	MsG0380016217.01	0.800147	1.651806e-48	7.634587e-46
MsG0180000076.01	MsG0380016217.01	0.815990	6.964809e-52	4.875051e-49
MsG0180000718.01	MsG0380016217.01	0.804685	1.918854e-49	9.956888e-47
MsG0180001293.01	MsG0380016217.01	0.883602	3.905135e-71	2.492881e-67
MsG0180001719.01	MsG0380016217.01	0.812300	4.544900e-51	2.879040e-48
MsG0180002134.01	MsG0380016217.01	0.805016	1.635703e-49	8.560431e-47
MsG0180002218.01	MsG0380016217.01	0.848200	7.133785e-60	1.298942e-56

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PPI

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Gene1	Gene2	Type
MsG0380016217.01	MsG0280008380.01	PPI
MsG0380016217.01	MsG0380017788.01	PPI
MsG0380016217.01	MsG0380015058.01	PPI
MsG0380016217.01	MsG0780040715.01	PPI
MsG0380016217.01	MsG0880046213.01	PPI
MsG0580024813.01	MsG0380016217.01	PPI
MsG0680034619.01	MsG0380016217.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016217.01.T01	MTR_3g085750	88.981	481	10	2	1	438	1	481	0.0	866

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016217.01.T01	AT1G67630	53.564	491	165	11	3	438	5	487	3.97e-170	493

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Find 122 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGGACAGATAGGTTCG+CGG	0.616408	3:-80581231	MsG0380016217.01.T01:CDS
AAAATATTTCCATACAAAGA+TGG	0.522271	3:+80581293	None:intergenic
AAAGAAGCAAGCTATTGATA+AGG	0.484721	3:-80579442	MsG0380016217.01.T01:CDS
AAAGATGGTGTATCATGCAT+AGG	0.599699	3:+80581308	None:intergenic
AAATCCGGGAAGATTAGCAA+AGG	0.624360	3:-80577214	MsG0380016217.01.T01:CDS
AAATGCATTGCCGTAAATCC+GGG	0.513156	3:-80577228	MsG0380016217.01.T01:CDS
AAATTGTCTGTTGTAGTAAA+AGG	0.318473	3:+80579035	None:intergenic
AACAGTATTGAGCATTCTGG+AGG	0.602568	3:-80579720	MsG0380016217.01.T01:intron
AAGATTAGCAAAGGGGAAGG+CGG	0.615958	3:-80577205	MsG0380016217.01.T01:CDS
AAGGGTGTAACCAGATCAGC+CGG	0.571145	3:+80581257	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACAACCTCAGAGAATT+TGG	-	Chr3:80577877-80577896	MsG0380016217.01.T01:intron	30.0%
AAAGAAGCAAGCTATTGATA+AGG	-	Chr3:80580033-80580052	MsG0380016217.01.T01:intron	30.0%
AACCTATGTTTCATACCAAA+GGG	+	Chr3:80577930-80577949	None:intergenic	30.0%
ACCATATTCTTAACCAACAA+AGG	-	Chr3:80581664-80581683	MsG0380016217.01.T01:intron	30.0%
AGATTGATGCTATAGAAAAC+CGG	-	Chr3:80578529-80578548	MsG0380016217.01.T01:intron	30.0%
AGCAGAATATCTTTCACTAT+GGG	-	Chr3:80581110-80581129	MsG0380016217.01.T01:CDS	30.0%
ATAGGTTGTTGATGCATATT+AGG	-	Chr3:80577943-80577962	MsG0380016217.01.T01:intron	30.0%
ATTGAATGTTCTTTGCCTAA+GGG	-	Chr3:80578773-80578792	MsG0380016217.01.T01:CDS	30.0%
CAACATACTGTGTAATAGAA+TGG	+	Chr3:80581388-80581407	None:intergenic	30.0%
CAACTAAGAACAATACTCTT+AGG	-	Chr3:80579052-80579071	MsG0380016217.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	80576937	80582560	80576937	ID=MsG0380016217.01;Name=MsG0380016217.01
Chr3	mRNA	80576937	80582560	80576937	ID=MsG0380016217.01.T01;Parent=MsG0380016217.01;Name=MsG0380016217.01.T01;_AED=0.35;_eAED=0.35;_QI=31\|0.72\|1\|1\|1\|1\|12\|248\|470
Chr3	exon	80576937	80577286	80576937	ID=MsG0380016217.01.T01:exon:32855;Parent=MsG0380016217.01.T01
Chr3	exon	80578287	80578328	80578287	ID=MsG0380016217.01.T01:exon:32854;Parent=MsG0380016217.01.T01
Chr3	exon	80578558	80578650	80578558	ID=MsG0380016217.01.T01:exon:32853;Parent=MsG0380016217.01.T01
Chr3	exon	80578740	80578835	80578740	ID=MsG0380016217.01.T01:exon:32852;Parent=MsG0380016217.01.T01
Chr3	exon	80578968	80579072	80578968	ID=MsG0380016217.01.T01:exon:32851;Parent=MsG0380016217.01.T01
Chr3	exon	80579395	80579568	80579395	ID=MsG0380016217.01.T01:exon:32850;Parent=MsG0380016217.01.T01
Chr3	exon	80579662	80579737	80579662	ID=MsG0380016217.01.T01:exon:32849;Parent=MsG0380016217.01.T01
Chr3	exon	80580583	80580662	80580583	ID=MsG0380016217.01.T01:exon:32848;Parent=MsG0380016217.01.T01
Chr3	exon	80581043	80581403	80581043	ID=MsG0380016217.01.T01:exon:32847;Parent=MsG0380016217.01.T01
Chr3	exon	80581962	80582093	80581962	ID=MsG0380016217.01.T01:exon:32846;Parent=MsG0380016217.01.T01
Chr3	exon	80582287	80582362	80582287	ID=MsG0380016217.01.T01:exon:32845;Parent=MsG0380016217.01.T01
Chr3	exon	80582454	80582560	80582454	ID=MsG0380016217.01.T01:exon:32844;Parent=MsG0380016217.01.T01
Chr3	five_prime_UTR	80582530	80582560	80582530	ID=MsG0380016217.01.T01:five_prime_utr;Parent=MsG0380016217.01.T01
Chr3	CDS	80582454	80582529	80582454	ID=MsG0380016217.01.T01:cds;Parent=MsG0380016217.01.T01
Chr3	CDS	80582287	80582362	80582287	ID=MsG0380016217.01.T01:cds;Parent=MsG0380016217.01.T01
Chr3	CDS	80581962	80582093	80581962	ID=MsG0380016217.01.T01:cds;Parent=MsG0380016217.01.T01
Chr3	CDS	80581043	80581403	80581043	ID=MsG0380016217.01.T01:cds;Parent=MsG0380016217.01.T01
Chr3	CDS	80580583	80580662	80580583	ID=MsG0380016217.01.T01:cds;Parent=MsG0380016217.01.T01
Chr3	CDS	80579662	80579737	80579662	ID=MsG0380016217.01.T01:cds;Parent=MsG0380016217.01.T01
Chr3	CDS	80579395	80579568	80579395	ID=MsG0380016217.01.T01:cds;Parent=MsG0380016217.01.T01
Chr3	CDS	80578968	80579072	80578968	ID=MsG0380016217.01.T01:cds;Parent=MsG0380016217.01.T01
Chr3	CDS	80578740	80578835	80578740	ID=MsG0380016217.01.T01:cds;Parent=MsG0380016217.01.T01
Chr3	CDS	80578558	80578650	80578558	ID=MsG0380016217.01.T01:cds;Parent=MsG0380016217.01.T01
Chr3	CDS	80578287	80578328	80578287	ID=MsG0380016217.01.T01:cds;Parent=MsG0380016217.01.T01
Chr3	CDS	80577185	80577286	80577185	ID=MsG0380016217.01.T01:cds;Parent=MsG0380016217.01.T01
Chr3	three_prime_UTR	80576937	80577184	80576937	ID=MsG0380016217.01.T01:three_prime_utr;Parent=MsG0380016217.01.T01

Gene Sequence

>MsG0380016217.01.T01

ATGAAAGAAGAAATCAAATCAGAATTCAAGAAAGCCAGGTTCGATTTCGAAGAAGAAGAAGAGATTCTCAGCAAATGTCTCACTTTTTGCGTCAACTACAGTCTCACCCCTTCCGATCTCGTCTCAAGCTGGGAAGCTTATTATCTTAACAGACAGCTGGATGAACCAATTGTACAAAATGCTGAAATGGAAGGGTTTCTGTTGCATCTGCAAAATAATGTGAAAGAAGATATTATTAAGGAGGAAACTGGTTTGCATCTTTATTCCATCGGAGATGTAGAAATGATCTTAAACGATGATGATACAAAGGACGATACTCCCAGCACACCAACGAATAATCGTCAAGATGTTTATTCGCCTATGCATGATACACCATCTTTGTATGGAAATATTTTAGCATCTGGAAAGCCGGCTGATCTGGTTACACCCTTTTCAAAACGGACAGATAGGTTCGCGGTGAAGTTCAGCATCAATACCATACCTGACGTAGAAAATGGAAAACAAGAACTTAATCACGAGAATGAAGAGAATGACGAGTACAATATTGTTTCGAAAATTGTAAGCCGAAAAAGATGTTCATTGGTGATTCATGGATCAGGGCCGAAACCAGGTTGCAGATTCATGTATGATAGGACTGAGGATAAGAGAAGCTTTTTTTCCGTTGGCATGATTTGTTGTGACGGAGAAGGCCGTCTTAATGAGAAGTCTGTCATGTTGCAGAGCAGTATTGAGCATTCTGGAGGGGAATGTGTCCGCCTTGACTTGCAGCGTTTAAGCCATTATTCAGTTTTCCCTGGTCAGGTAGTTGGAATTGGAGGGCATAATCCCAGTGGGCATTGCCTAGTTGCATCTAAATTGGTGGATTATATACCTACCTCTGTTGCCAAGGAGGATTTGAATCCTTCAAAGAAGCAAGCTATTGATAAGGAGAATCAGCCAACTGAACTGCTTTGTAATCAGAGAGAGTTATCAATGATTATTGCGGCTGGTCCTTTTACTACAACAGACAATTTGTTTTTTGAGCCTCTTGTAGAACTGCTGGCATATGCAAAGCGAAGACCACCACAGTTGCTTGTATTGCTTGGACCATTTATTGATTCTGAACACCCAGACATCAAGAAAGGAACTGTGGACAGGGATTTTGATGAAATATTTCGTTTGGAAGTCTTGAGGAAGTTGGAAGATTATGTAGAAAGTATGGGTTCAACAGTACGTGTTCTCCTTGTACCATCTATACGGGATGCTAACCATGATTTTGTTTTTCCTCAGATAGCCAGTCTCACTAATCCTGGAATCTTCGAGGCAAATGAGGTTCTTGATAATGAAGGCGGAAGAGACAACAGCATGAAATGCATTGCCGTAAATCCGGGAAGATTAGCAAAGGGGAAGGCGGAGGCACTTTGTAGAACTTGA

Protein sequence

>MsG0380016217.01.T01

MKEEIKSEFKKARFDFEEEEEILSKCLTFCVNYSLTPSDLVSSWEAYYLNRQLDEPIVQNAEMEGFLLHLQNNVKEDIIKEETGLHLYSIGDVEMILNDDDTKDDTPSTPTNNRQDVYSPMHDTPSLYGNILASGKPADLVTPFSKRTDRFAVKFSINTIPDVENGKQELNHENEENDEYNIVSKIVSRKRCSLVIHGSGPKPGCRFMYDRTEDKRSFFSVGMICCDGEGRLNEKSVMLQSSIEHSGGECVRLDLQRLSHYSVFPGQVVGIGGHNPSGHCLVASKLVDYIPTSVAKEDLNPSKKQAIDKENQPTELLCNQRELSMIIAAGPFTTTDNLFFEPLVELLAYAKRRPPQLLVLLGPFIDSEHPDIKKGTVDRDFDEIFRLEVLRKLEDYVESMGSTVRVLLVPSIRDANHDFVFPQIASLTNPGIFEANEVLDNEGGRDNSMKCIAVNPGRLAKGKAEALCRT*