AlfalfaGEDB | MsG0380014719.01

M. sativa cultivar ZhongmuNo.1 / MsG0380014719.01

KEGG: K15535
GO: GO:0005524 GO:0016301 GO:0016310
PFAM: PF01326

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014719.01.T01	KEH27294.1	83.402	482	15	2	157	573	721	1202	0	785
MsG0380014719.01.T01	KEH27294.1	95	60	1	1	109	166	481	540	1.41E-21	112

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014719.01.T01	Q6ZY51	55.936	497	138	4	157	572	699	1195	7.84E-173	524

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014719.01.T01	A0A072UBU6	83.402	482	15	2	157	573	721	1202	0.0	785

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048059.01	MsG0380014719.01	0.849295	3.545045e-60	6.689703e-57
MsG0080048560.01	MsG0380014719.01	0.801153	1.029812e-48	4.882953e-46
MsG0080048887.01	MsG0380014719.01	0.810427	1.159223e-50	6.985335e-48
MsG0080048896.01	MsG0380014719.01	0.856599	2.884255e-62	6.921367e-59
MsG0080048900.01	MsG0380014719.01	0.819619	1.055882e-52	8.166123e-50
MsG0080048909.01	MsG0380014719.01	0.804823	1.795311e-49	9.349653e-47
MsG0080048992.01	MsG0380014719.01	0.872026	4.361105e-67	1.796804e-63
MsG0080049016.01	MsG0380014719.01	0.839893	1.206382e-57	1.689544e-54
MsG0080049018.01	MsG0380014719.01	0.864443	1.211261e-64	3.804195e-61
MsG0080049023.01	MsG0380014719.01	0.833068	6.594665e-56	7.511501e-53

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014719.01.T01	MTR_6g093240	83.402	482	15	2	157	573	721	1202	0.0	785
MsG0380014719.01.T01	MTR_6g093240	95.000	60	1	1	109	166	481	540	1.70e-25	112
MsG0380014719.01.T01	MTR_6g093240	83.402	482	15	2	157	573	412	893	0.0	783
MsG0380014719.01.T01	MTR_6g093240	95.000	60	1	1	109	166	172	231	1.91e-25	112
MsG0380014719.01.T01	MTR_6g093240	83.402	482	15	2	157	573	170	651	0.0	783
MsG0380014719.01.T01	MTR_1g117000	81.743	482	22	3	157	573	746	1226	0.0	759
MsG0380014719.01.T01	MTR_1g117000	91.667	60	3	1	109	166	506	565	1.14e-23	106
MsG0380014719.01.T01	MTR_8g069760	26.634	413	240	10	197	571	1095	1482	9.93e-28	119
MsG0380014719.01.T01	MTR_8g055950	52.308	65	30	1	5	68	85	149	1.02e-15	77.0
MsG0380014719.01.T01	MTR_2g073220	51.667	60	29	0	9	68	139	198	4.15e-14	72.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014719.01.T01	AT5G26570	55.936	497	138	4	157	572	699	1195	7.99e-174	524
MsG0380014719.01.T01	AT4G24450	26.905	420	225	12	197	571	895	1277	3.78e-28	120
MsG0380014719.01.T01	AT4G24450	26.905	420	225	12	197	571	895	1277	3.78e-28	120
MsG0380014719.01.T01	AT4G24450	26.905	420	225	12	197	571	895	1277	3.78e-28	120
MsG0380014719.01.T01	AT1G10760	24.574	411	249	12	197	571	1013	1398	1.00e-23	107
MsG0380014719.01.T01	AT1G10760	24.574	411	249	12	197	571	1013	1398	1.00e-23	107
MsG0380014719.01.T01	AT1G10760	24.574	411	249	12	197	571	1013	1398	1.00e-23	107
MsG0380014719.01.T01	AT5G26570	47.222	108	28	1	157	235	699	806	5.17e-18	88.6

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Find 187 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGGGTCAACTGACAG+TGG	0.666516	3:-58822016	None:intergenic
AAACTCTAGCTTCAGGAACC+CGG	0.522157	3:+58821846	MsG0380014719.01.T01:CDS
AAAGACATCATTGAGAACAT+TGG	0.531001	3:+58821482	MsG0380014719.01.T01:CDS
AAAGGGAAGGCAGTTATCGT+TGG	0.600479	3:+58822459	MsG0380014719.01.T01:three_prime_UTR
AAATCAATTCCTGGAGTTGG+TGG	0.514647	3:-58821442	None:intergenic
AACCCCAGTAGAAATATGAA+TGG	0.527695	3:+58822164	MsG0380014719.01.T01:exon
AACTATTTGTCAGGCTTCTC+GGG	0.385847	3:+58817736	MsG0380014719.01.T01:CDS
AACTCTAGCTTCAGGAACCC+GGG	0.563497	3:+58821847	MsG0380014719.01.T01:CDS
AAGAAATCAATTCCTGGAGT+TGG	0.535317	3:-58821445	None:intergenic
AATACCACCAAAGCCCGCAC+GGG	0.660166	3:-58817695	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGACATCATTGAGAACAT+TGG	+	Chr3:58821482-58821501	MsG0380014719.01.T01:CDS	30.0%
AAGTACAAGAGAATCAGAAA+AGG	-	Chr3:58818402-58818421	None:intergenic	30.0%
AAGTTGTGTGTTCAATGTAT+TGG	+	Chr3:58819059-58819078	MsG0380014719.01.T01:intron	30.0%
ACTAAATACTTCTTCCATTG+CGG	+	Chr3:58818513-58818532	MsG0380014719.01.T01:intron	30.0%
AGCCTATATAATAGAATCTC+TGG	+	Chr3:58820123-58820142	MsG0380014719.01.T01:intron	30.0%
AGTATACTTTATTCACTCGA+AGG	-	Chr3:58818186-58818205	None:intergenic	30.0%
ATACAACAATTGCTTATTGC+AGG	+	Chr3:58819613-58819632	MsG0380014719.01.T01:intron	30.0%
ATATCATGTGGGAAATTTGA+TGG	+	Chr3:58821884-58821903	MsG0380014719.01.T01:CDS	30.0%
ATGATAGAAGATAGTAAGCT+AGG	-	Chr3:58818443-58818462	None:intergenic	30.0%
ATTAATAAGTTTGATTGCGC+CGG	+	Chr3:58819425-58819444	MsG0380014719.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	58817556	58822564	58817556	ID=MsG0380014719.01;Name=MsG0380014719.01
Chr3	mRNA	58817556	58822564	58817556	ID=MsG0380014719.01.T01;Parent=MsG0380014719.01;Name=MsG0380014719.01.T01;_AED=0.48;_eAED=0.51;_QI=0\|0\|0.14\|1\|1\|1\|7\|390\|573
Chr3	exon	58817556	58817757	58817556	ID=MsG0380014719.01.T01:exon:11345;Parent=MsG0380014719.01.T01
Chr3	exon	58817922	58818052	58817922	ID=MsG0380014719.01.T01:exon:11346;Parent=MsG0380014719.01.T01
Chr3	exon	58818736	58818900	58818736	ID=MsG0380014719.01.T01:exon:11347;Parent=MsG0380014719.01.T01
Chr3	exon	58819289	58819375	58819289	ID=MsG0380014719.01.T01:exon:11348;Parent=MsG0380014719.01.T01
Chr3	exon	58819635	58819711	58819635	ID=MsG0380014719.01.T01:exon:11349;Parent=MsG0380014719.01.T01
Chr3	exon	58819861	58820015	58819861	ID=MsG0380014719.01.T01:exon:11350;Parent=MsG0380014719.01.T01
Chr3	exon	58821270	58822564	58821270	ID=MsG0380014719.01.T01:exon:11351;Parent=MsG0380014719.01.T01
Chr3	CDS	58817556	58817757	58817556	ID=MsG0380014719.01.T01:cds;Parent=MsG0380014719.01.T01
Chr3	CDS	58817922	58818052	58817922	ID=MsG0380014719.01.T01:cds;Parent=MsG0380014719.01.T01
Chr3	CDS	58818736	58818900	58818736	ID=MsG0380014719.01.T01:cds;Parent=MsG0380014719.01.T01
Chr3	CDS	58819289	58819375	58819289	ID=MsG0380014719.01.T01:cds;Parent=MsG0380014719.01.T01
Chr3	CDS	58819635	58819711	58819635	ID=MsG0380014719.01.T01:cds;Parent=MsG0380014719.01.T01
Chr3	CDS	58819861	58820015	58819861	ID=MsG0380014719.01.T01:cds;Parent=MsG0380014719.01.T01
Chr3	CDS	58821270	58822174	58821270	ID=MsG0380014719.01.T01:cds;Parent=MsG0380014719.01.T01
Chr3	three_prime_UTR	58822175	58822564	58822175	ID=MsG0380014719.01.T01:three_prime_utr;Parent=MsG0380014719.01.T01

Gene Sequence

>MsG0380014719.01.T01

ATGGATAACTCAGCTGATCTCATCAGTTCCTGCTTGCAAAATTCTGCTTCTACTCCTTCTGACCGGTCAGTGAGATGGAACAACAACGGTACTATCTGCGCTGTTCTAAATGTTGATGGTAACTGTATCGGAATCCCTACCCGTGCGGGCTTTGGTGGTATTATCCGCAACAATTCAGGCAACTATTTGTCAGGCTTCTCGGGGGTGCCATGCTCTAACTTCTTCAACAAAAAGGATGACCCAGTACATGCATCTGCTCCATTTCAAAGTATAGGGAGTGTCATGAATGCAACCTTATTGTGTCTAGGGAGGCCATTTCCAGGTCTAGAATGTAATATGGATGGTGCAGTAGAATCAACAGCTTCAAAAGAACAAGGAATTAAACTTTTATTTAAAACCATGGAGTCTTTGAATGCTTTGAGAGATATTATTGTAAAGGGTCTTGAAAGTGGCCTCAGGAATGATGCTCCAGATTCTGCAATAGCTATGCGCCAAAAGGTTGAAAGAATTGTTCCTGGGTTGTTACCATCTCCAGTGGAAGGTCCTATTATCCTCATTGTTAACAAAGCTGACGGTGATGAAGAGGAAAAGGTCGTCTTTGTCACTTGTGAAGATGACGAAAAAATTGCTGATATTCAAAGGCTTATTGGGTCATGTGTAAGGTTGGAAGCATCTGCCGCTGGTGTTAATCTGACGTTGTCCTCTTCAGTTGACCTTGATGGCAATTCTTCTGTTGAAAGTGCTTTTGATGATAATATCTCTGGGGTTGATGTTCCTGCTTTCTCTGCTGGTAGAATCTCCAAATATAGTCAGGTAGTTTACAGCGATCAGGGGGTGCCTGCTTCCTTTCAGGTTCCTTCTGGGGCAGTTTTACCATTTGGATCCATGGAATTGGAGCTAGAGAAGAGCGACTCCACTGAAATATTCAAGTCTTTACTGGACAAGATAGAAACAGCAAAACTGGAGGGTGGTGAACTTGATGGTCTATGCCACCAACTCCAGGAATTGATTTCTTCCCTGAAGCTATCAAAAGACATCATTGAGAACATTGGAAGAATGTTTCCAAGCAATGCACGATTGATTGTTCGATCCAGCGCCAATGTGGAGGACTTGGCTGGAATGTCAGCAGCTGGACTTTACGAATCAATACCCAATGTGAGTCCTTCCAATCAAACAGTCTTTGCAGATGCCATTGGCCAAGTATGGGCTTCACTGTACACACGAAGGGCAGTGTTGAGCCGCCGAGCTGCTGGTGTGCCTCAGAAGGAAGCTTCAATGGCAATTCTGATCCAAGAAATGCTTTCACCAGATCTATCATTTGTACTGCATACTATGAGCCCAACTGACCAGGATAACAATTCTGTGGAGACTGAGATTGCTTCTGGCCTTGGTGAAACTCTAGCTTCAGGAACCCGGGGTACACCATGGCGTATATCATGTGGGAAATTTGATGGGCTTGTGCAAACACTGGCTTTTGCAAACTTCAGCGAGGAGTTGCTTGTACGCGGTGCAGGGCCTGCGGATGGGGAGGTCATCCATTTGACGGTGGATTACAGCAAGAAACCACTGTCAGTTGACCCAGTTTTCCGTCGACAACTTGGTCAACGCCTTTGTGCAGTTGGGTTTTTCCTCGAGAGAAAGTTCGGATGCCCACAGGATGTGGAAGGATGTCTTGTTGGAAAAGACATTTATATTGTTCAGACAAGGCCCCAACCCCAGTAG

Protein sequence

>MsG0380014719.01.T01

MDNSADLISSCLQNSASTPSDRSVRWNNNGTICAVLNVDGNCIGIPTRAGFGGIIRNNSGNYLSGFSGVPCSNFFNKKDDPVHASAPFQSIGSVMNATLLCLGRPFPGLECNMDGAVESTASKEQGIKLLFKTMESLNALRDIIVKGLESGLRNDAPDSAIAMRQKVERIVPGLLPSPVEGPIILIVNKADGDEEEKVVFVTCEDDEKIADIQRLIGSCVRLEASAAGVNLTLSSSVDLDGNSSVESAFDDNISGVDVPAFSAGRISKYSQVVYSDQGVPASFQVPSGAVLPFGSMELELEKSDSTEIFKSLLDKIETAKLEGGELDGLCHQLQELISSLKLSKDIIENIGRMFPSNARLIVRSSANVEDLAGMSAAGLYESIPNVSPSNQTVFADAIGQVWASLYTRRAVLSRRAAGVPQKEASMAILIQEMLSPDLSFVLHTMSPTDQDNNSVETEIASGLGETLASGTRGTPWRISCGKFDGLVQTLAFANFSEELLVRGAGPADGEVIHLTVDYSKKPLSVDPVFRRQLGQRLCAVGFFLERKFGCPQDVEGCLVGKDIYIVQTRPQPQ*