AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015353.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015353.01.T01 MTR_3g068125 96.933 489 15 0 72 560 1 489 0.0 1000
MsG0380015353.01.T01 MTR_7g063090 49.016 508 239 9 72 559 1 508 1.37e-168 488
MsG0380015353.01.T01 MTR_8g028765 48.434 415 205 5 153 560 77 489 6.73e-138 409
MsG0380015353.01.T01 MTR_7g078320 47.596 416 207 7 153 560 77 489 5.52e-126 379
MsG0380015353.01.T01 MTR_5g010070 46.959 411 208 6 153 556 82 489 1.41e-125 377
MsG0380015353.01.T01 MTR_8g098835 46.359 412 210 7 153 556 105 513 2.26e-124 375
MsG0380015353.01.T01 MTR_4g046680 44.068 413 217 7 153 560 74 477 6.04e-120 363
MsG0380015353.01.T01 MTR_4g061590 45.278 413 215 7 153 556 107 517 1.70e-117 358
MsG0380015353.01.T01 MTR_2g095970 44.712 416 218 7 153 560 132 543 2.42e-117 358
MsG0380015353.01.T01 MTR_2g088940 44.391 419 215 7 152 558 56 468 4.62e-111 340
MsG0380015353.01.T01 MTR_2g088940 44.153 419 218 7 152 558 56 470 1.19e-110 338
MsG0380015353.01.T01 MTR_4g046677 41.667 420 236 5 146 558 56 473 3.57e-108 332
MsG0380015353.01.T01 MTR_5g008060 43.077 390 210 4 154 532 126 514 2.04e-103 322
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015353.01.T01 AT3G11420 52.610 498 211 7 81 558 13 505 0.0 520
MsG0380015353.01.T01 AT2G37730 52.278 417 189 5 153 559 96 512 1.91e-163 476
MsG0380015353.01.T01 AT5G41460 43.885 417 222 6 153 560 110 523 2.29e-122 370
MsG0380015353.01.T01 AT4G23490 44.762 420 217 8 153 560 109 525 7.40e-122 369
MsG0380015353.01.T01 AT4G15240 45.012 431 218 9 141 560 64 486 2.14e-117 357
MsG0380015353.01.T01 AT4G11350 41.270 441 243 8 134 560 68 506 8.98e-116 353
MsG0380015353.01.T01 AT1G33250 43.350 406 218 4 138 532 114 518 2.93e-115 353
MsG0380015353.01.T01 AT1G01570 43.839 422 216 10 153 556 53 471 7.73e-114 347
MsG0380015353.01.T01 AT1G01570 43.839 422 216 10 153 556 84 502 2.74e-113 347
MsG0380015353.01.T01 AT1G05280 42.553 423 229 7 152 560 67 489 6.38e-111 340
MsG0380015353.01.T01 AT1G07850 46.814 408 206 7 153 552 123 527 9.40e-111 341
MsG0380015353.01.T01 AT1G05280 43.603 383 203 6 152 521 67 449 1.29e-102 318
MsG0380015353.01.T01 AT4G00295 48.083 339 164 6 153 479 78 416 1.65e-99 310
MsG0380015353.01.T01 AT5G12460 35.731 417 249 7 152 559 35 441 1.73e-90 285
MsG0380015353.01.T01 AT4G11350 48.230 226 107 4 134 349 68 293 3.43e-62 207

Find 137 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAGATACTATTATTATTA+TGG 0.181752 3:+68941192 MsG0380015353.01.T01:CDS
TAGGCAATGCTGCAACTTTA+TGG 0.202911 3:+68942325 MsG0380015353.01.T01:CDS
AGTACATTCTTCCAATATTC+TGG 0.221242 3:-68941895 None:intergenic
TCAATTGCACCCGGTGTTTC+CGG 0.229748 3:+68941459 MsG0380015353.01.T01:CDS
TTCTCATATCTTTCTTTCCT+TGG 0.242578 3:+68936953 MsG0380015353.01.T01:CDS
CATTCTTATGATATGGCTTT+TGG 0.252514 3:+68941102 MsG0380015353.01.T01:CDS
TGTTATGCATTCTTATGATA+TGG 0.258668 3:+68941095 MsG0380015353.01.T01:CDS
CTTGTCAACATGTCTCTTAT+AGG 0.267306 3:-68941803 None:intergenic
GATGGTCAATATCTATTTCT+TGG 0.284894 3:+68941581 MsG0380015353.01.T01:CDS
TGGGCCTGTGTAAACGAATT+AGG 0.288879 3:+68941231 MsG0380015353.01.T01:CDS
CTTTGCTGCACTATCCTTGC+AGG 0.301406 3:-68941535 None:intergenic
CTGGAGATCCAACACTTATT+AGG 0.318767 3:+68936874 MsG0380015353.01.T01:CDS
ATGGTTCTGATCAAAGAGTT+TGG 0.320612 3:+68941211 MsG0380015353.01.T01:CDS
TTCTTTCAGCTTGACATTAG+AGG 0.320745 3:+68941373 MsG0380015353.01.T01:intron
AGACCGATGGTTTCCATTAC+CGG 0.321789 3:+68940624 MsG0380015353.01.T01:CDS
ATGGTCAATATCTATTTCTT+GGG 0.336226 3:+68941582 MsG0380015353.01.T01:CDS
AAAGCGTTTGTTACGATCAT+AGG 0.351519 3:+68941554 MsG0380015353.01.T01:CDS
AGCTAGACTAGCCAATATTA+TGG 0.361476 3:+68941158 MsG0380015353.01.T01:CDS
TCTCCAAGTATCACCATTAC+TGG 0.365309 3:+68936925 MsG0380015353.01.T01:CDS
AGAAGTTAAGTGAGTCTTGT+AGG 0.369978 3:+68942462 MsG0380015353.01.T01:three_prime_UTR
AAGACAAGAATCCATAATAT+TGG 0.372930 3:-68941169 None:intergenic
TGGTTCTGATCAAAGAGTTT+GGG 0.381224 3:+68941212 MsG0380015353.01.T01:CDS
TCGTCCGGCTTCAAATTCTT+TGG 0.392591 3:-68940826 None:intergenic
TGAAGCTGGATCCAGAATAT+TGG 0.394541 3:+68941884 MsG0380015353.01.T01:CDS
GAAGTGTGCATATCAGAATA+AGG 0.398327 3:+68942369 MsG0380015353.01.T01:CDS
ATTACAAACCACCTAACATT+TGG 0.398470 3:-68940961 None:intergenic
AATGTTAGGTGGTTTGTAAT+GGG 0.399701 3:+68940964 MsG0380015353.01.T01:CDS
AACATCTCACATATTGTATT+CGG 0.400973 3:+68940703 MsG0380015353.01.T01:CDS
ACAATATGTGAGATGTTTGT+AGG 0.401191 3:-68940697 None:intergenic
GACTTGGTTTGCCAAATGTT+AGG 0.401562 3:+68940950 MsG0380015353.01.T01:CDS
TAGTACAAGGTTTGAATGAT+TGG 0.403592 3:+68936797 MsG0380015353.01.T01:CDS
ACATGTAAATGCTCCGGTAA+TGG 0.419091 3:-68940637 None:intergenic
GAGACAATTCATTGGCTGAC+TGG 0.419169 3:-68936906 None:intergenic
TAAAGTTTCTGCCTTGAAGC+TGG 0.424979 3:+68941870 MsG0380015353.01.T01:CDS
GAGAATTTAGTTACTGTGTT+GGG 0.433829 3:+68941012 MsG0380015353.01.T01:CDS
CAACACAGTAACTAAATTCT+CGG 0.435773 3:-68941010 None:intergenic
GATGGCTGCTGGCATACGTC+AGG 0.438417 3:-68941730 None:intergenic
CTGGTTTAGCGAATGTTGAA+TGG 0.440363 3:-68940603 None:intergenic
CAAGTGATATCGATGCTATA+AGG 0.444451 3:-68940576 None:intergenic
AACACAGTAACTAAATTCTC+GGG 0.445312 3:-68941009 None:intergenic
CAGGTTAGCAAGGCGAGGAC+TGG 0.447016 3:+68941769 MsG0380015353.01.T01:CDS
TACAGCGATGAGACTCAATA+AGG 0.448682 3:+68936771 None:intergenic
GTTTGTAGGTATTGTATCAA+TGG 0.455882 3:-68940683 None:intergenic
GAAGACATTTGACTTTGGTC+CGG 0.464283 3:-68941478 None:intergenic
AGGAAAGAAAGATATGAGAA+TGG 0.465209 3:-68936950 None:intergenic
CTCAATTTAAATCGTTTCAC+AGG 0.472836 3:-68942645 None:intergenic
TATGGATGGAGGAAGCATAA+AGG 0.473984 3:+68942343 MsG0380015353.01.T01:CDS
TGCACTCTGCATCTGCAGTT+CGG 0.475113 3:+68940899 MsG0380015353.01.T01:CDS
GGAAAGAAAGATATGAGAAT+GGG 0.477858 3:-68936949 None:intergenic
TCTTTCAGCTTGACATTAGA+GGG 0.478025 3:+68941374 MsG0380015353.01.T01:intron
CTGATGGAATCCTCTTTCTC+TGG 0.479756 3:-68941265 None:intergenic
AAATGTTAGGTGGTTTGTAA+TGG 0.483649 3:+68940963 MsG0380015353.01.T01:CDS
CATATTGTATTCGGCATCGC+TGG 0.484108 3:+68940712 MsG0380015353.01.T01:CDS
ATATTCTGGATCCAGCTTCA+AGG 0.484846 3:-68941881 None:intergenic
GTTACGATCATAGGCGAAGA+TGG 0.485744 3:+68941563 MsG0380015353.01.T01:CDS
TGCGCGGCTAAAAGACCATA+TGG 0.489054 3:-68941400 None:intergenic
GTAGCAACTACAGCAAGCTT+TGG 0.489072 3:+68940758 MsG0380015353.01.T01:CDS
CCATCACGCACGACACGACT+TGG 0.489582 3:-68936841 None:intergenic
ATCAATTGTATTATGTTGGT+GGG 0.494583 3:+68941049 MsG0380015353.01.T01:CDS
TTAATGAAGACATTTGACTT+TGG 0.494866 3:-68941483 None:intergenic
CACAGGGATGGACTAAGTTC+AGG 0.495648 3:+68940872 MsG0380015353.01.T01:CDS
AATCAATTGTATTATGTTGG+TGG 0.497202 3:+68941048 MsG0380015353.01.T01:CDS
CGAGAATTTAGTTACTGTGT+TGG 0.501043 3:+68941011 MsG0380015353.01.T01:CDS
AAGAAGTGCAAGAGAGCAGA+TGG 0.501500 3:+68941832 MsG0380015353.01.T01:CDS
TGATAATTGAATTAAGAGCT+TGG 0.504109 3:+68942596 MsG0380015353.01.T01:three_prime_UTR
GCAACTACAGCAAGCTTTGG+TGG 0.504940 3:+68940761 MsG0380015353.01.T01:CDS
GTATCTCTTACCAGAGAAAG+AGG 0.506069 3:+68941255 MsG0380015353.01.T01:CDS
GATACTTGGAGACAATTCAT+TGG 0.508356 3:-68936914 None:intergenic
TCGCCTTGCTAACCTGATCC+AGG 0.517031 3:-68941762 None:intergenic
CTTTCACGTTTAATACTCGA+TGG 0.519089 3:+68941701 MsG0380015353.01.T01:CDS
GTTTCATTCTCAATAAGAGT+TGG 0.520650 3:+68940541 MsG0380015353.01.T01:CDS
GACATTAGAGGGAATCCATA+TGG 0.523887 3:+68941385 MsG0380015353.01.T01:CDS
CTCAATAAGGATATAGTACA+AGG 0.524129 3:+68936784 MsG0380015353.01.T01:CDS
TGTATAACATGTAAATGCTC+CGG 0.525305 3:-68940643 None:intergenic
CCAAGTCGTGTCGTGCGTGA+TGG 0.530775 3:+68936841 MsG0380015353.01.T01:CDS
CACAATCAATTGTATTATGT+TGG 0.531738 3:+68941045 MsG0380015353.01.T01:CDS
GGACCAGTAATGGTGATACT+TGG 0.531955 3:-68936928 None:intergenic
GACTTTGGTCCGGAAACACC+GGG 0.532438 3:-68941468 None:intergenic
GCACTATCCTTGCAGGGTCA+AGG 0.533225 3:-68941528 None:intergenic
TGACTTTGGTCCGGAAACAC+CGG 0.538833 3:-68941469 None:intergenic
TATGGAATTAGCATATCGTC+CGG 0.541449 3:-68940841 None:intergenic
GGTAATGGAAACCATCGGTC+TGG 0.541977 3:-68940622 None:intergenic
CATTGCAGACGTTTAAAACA+TGG 0.544137 3:+68941659 MsG0380015353.01.T01:CDS
CAATGCTGCAACTTTATGGA+TGG 0.549920 3:+68942329 MsG0380015353.01.T01:CDS
TATGAGAATGGGACCAGTAA+TGG 0.549950 3:-68936938 None:intergenic
CAGAGAAAGAGGATTCCATC+AGG 0.551061 3:+68941266 MsG0380015353.01.T01:CDS
GATGGAGGAAGCATAAAGGA+TGG 0.551195 3:+68942347 MsG0380015353.01.T01:CDS
ACACCGGGTGCAATTGATCA+AGG 0.552142 3:-68941453 None:intergenic
AAGAGACATGTTGACAAGGA+AGG 0.554279 3:+68941808 MsG0380015353.01.T01:CDS
ATTTAAATCGTTTCACAGGA+GGG 0.555557 3:-68942641 None:intergenic
ACAAAACCTCTGCAAGCAGT+TGG 0.555849 3:-68940787 None:intergenic
TAAATAGTAATTGTTTCTTG+AGG 0.556987 3:-68942401 None:intergenic
GTGACACAAGCGGTGCCAGA+GGG 0.558684 3:-68941423 None:intergenic
TGCTACCACCTAATAAGTGT+TGG 0.564666 3:-68936882 None:intergenic
AATTCCATATAAAATCTCAC+AGG 0.565071 3:+68940855 MsG0380015353.01.T01:CDS
GTCGTGCGTGATGGACTCAC+TGG 0.566504 3:+68936850 MsG0380015353.01.T01:CDS
GCGTGATGGACTCACTGGAC+TGG 0.568593 3:+68936855 MsG0380015353.01.T01:CDS
AAAGATGAATCAAGACCGGA+TGG 0.570780 3:+68940453 MsG0380015353.01.T01:CDS
GATCATGACAAGATTCCATC+CGG 0.571059 3:-68940468 None:intergenic
TTATCACTTCAAAACAGAAG+TGG 0.574497 3:-68942579 None:intergenic
CATATAAAATCTCACAGGGA+TGG 0.576471 3:+68940860 MsG0380015353.01.T01:CDS
AATTTAAATCGTTTCACAGG+AGG 0.576871 3:-68942642 None:intergenic
TTTCCTGGATCAGGTTAGCA+AGG 0.577526 3:+68941759 MsG0380015353.01.T01:CDS
AAGCGGTGCCAGAGGGTGCG+CGG 0.577646 3:-68941416 None:intergenic
GGTGCAATTGATCAAGGTGA+TGG 0.580356 3:-68941447 None:intergenic
AAAGCTTGCTGTAGTTGCTA+CGG 0.585308 3:-68940756 None:intergenic
AAGGTTTGAATGATTGGCGA+AGG 0.588057 3:+68936803 MsG0380015353.01.T01:CDS
GTTTACGAAAGCTTTAGACT+TGG 0.588389 3:+68940934 MsG0380015353.01.T01:CDS
CATCGAGTATTAAACGTGAA+AGG 0.595299 3:-68941700 None:intergenic
TGCTGCAACTTTATGGATGG+AGG 0.596653 3:+68942332 MsG0380015353.01.T01:CDS
TTGGTTTGCCAAATGTTAGG+TGG 0.598605 3:+68940953 MsG0380015353.01.T01:CDS
TACTCCTAATTCGTTTACAC+AGG 0.598658 3:-68941235 None:intergenic
TTTGCTGCACTATCCTTGCA+GGG 0.605237 3:-68941534 None:intergenic
TGGAATCCAACTGCTTGCAG+AGG 0.608124 3:+68940781 MsG0380015353.01.T01:CDS
GAAACCAAAGAATTTGAAGC+CGG 0.608342 3:+68940822 MsG0380015353.01.T01:CDS
ACATGGCGAAGTTCGAGTGA+TGG 0.608871 3:+68941676 MsG0380015353.01.T01:CDS
TGGTCAATATCTATTTCTTG+GGG 0.611066 3:+68941583 MsG0380015353.01.T01:CDS
ATGGCTGCTGGCATACGTCA+GGG 0.616574 3:-68941729 None:intergenic
CATACGACCTTGACCCTGCA+AGG 0.619078 3:+68941521 MsG0380015353.01.T01:CDS
TCGCTGGTTCATCGAAAATG+TGG 0.619094 3:+68940728 MsG0380015353.01.T01:CDS
GACACGACTTGGAAGTCCAC+AGG 0.619285 3:-68936830 None:intergenic
AGTGACACAAGCGGTGCCAG+AGG 0.619459 3:-68941424 None:intergenic
TACATCATTGTTGATAACAG+CGG 0.636999 3:+68941624 MsG0380015353.01.T01:CDS
CTATAAGAGACATGTTGACA+AGG 0.643214 3:+68941804 MsG0380015353.01.T01:CDS
TGGATCAGGTTAGCAAGGCG+AGG 0.644993 3:+68941764 MsG0380015353.01.T01:CDS
TGTAATGGGAGATGATGATA+CGG 0.647634 3:+68940978 MsG0380015353.01.T01:CDS
TCACCTTGATCAATTGCACC+CGG 0.648699 3:+68941450 MsG0380015353.01.T01:CDS
TGGTGGGAATTCTGAGAGTG+TGG 0.651969 3:+68941065 MsG0380015353.01.T01:CDS
GATTGGCGAAGGTTTACCTG+TGG 0.656669 3:+68936814 MsG0380015353.01.T01:CDS
AAGTTGCAGCATTGCCTACG+TGG 0.657008 3:-68942320 None:intergenic
GAGATCCAACACTTATTAGG+TGG 0.659383 3:+68936877 MsG0380015353.01.T01:CDS
CATTCGCTAAACCAGACCGA+TGG 0.664525 3:+68940611 MsG0380015353.01.T01:CDS
GCTCCGGTAATGGAAACCAT+CGG 0.666665 3:-68940627 None:intergenic
AGGTGATGGAGTGACACAAG+CGG 0.678083 3:-68941433 None:intergenic
CATCTGCAGTTCGGATATCG+CGG 0.678366 3:+68940908 MsG0380015353.01.T01:CDS
ATTCCATATAAAATCTCACA+GGG 0.693816 3:+68940856 MsG0380015353.01.T01:CDS
ACACAGTAACTAAATTCTCG+GGG 0.699271 3:-68941008 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAATTAAAAAAAAA+AGG + Chr3:68938911-68938930 MsG0380015353.01.T01:intron 0.0%
!! AATTTAGGTATAATAAAAAT+AGG + Chr3:68937802-68937821 MsG0380015353.01.T01:intron 10.0%
!! ATAAAATGATGATATTTAAA+TGG + Chr3:68937940-68937959 MsG0380015353.01.T01:intron 10.0%
!! ATAAAATTAAAAAAAAAAGG+AGG + Chr3:68938914-68938933 MsG0380015353.01.T01:intron 10.0%
!! CTATAATATTATATATTTCT+TGG + Chr3:68938657-68938676 MsG0380015353.01.T01:intron 10.0%
!! TAATATATTGAATAAGTTAA+TGG - Chr3:68938572-68938591 None:intergenic 10.0%
!! TTTGTTTAATTCATATAAAA+AGG - Chr3:68937722-68937741 None:intergenic 10.0%
!!! ATTTTAAAATGCAATTTTTT+TGG - Chr3:68938310-68938329 None:intergenic 10.0%
!!! TTTTAAAATGCAATTTTTTT+GGG - Chr3:68938309-68938328 None:intergenic 10.0%
!!! TTTTAATAAATAAATGTCTT+AGG + Chr3:68942549-68942568 MsG0380015353.01.T01:three_prime_UTR 10.0%
!! AAGATTAAGAATAGAAAAAA+AGG - Chr3:68939011-68939030 None:intergenic 15.0%
!! AGATTAAGAATAGAAAAAAA+GGG - Chr3:68939010-68939029 None:intergenic 15.0%
!! AGTAAGTATTATAAAAAAAG+TGG - Chr3:68937590-68937609 None:intergenic 15.0%
!! CATAGATACTATTATTATTA+TGG + Chr3:68941192-68941211 MsG0380015353.01.T01:CDS 15.0%
!! GATCTAACTTATTAAAAAAT+TGG + Chr3:68939749-68939768 MsG0380015353.01.T01:intron 15.0%
!! GTTGTAAAAATTAAAAAAGT+AGG + Chr3:68938433-68938452 MsG0380015353.01.T01:intron 15.0%
!! TAAAAAACTAACACTTAAAA+TGG - Chr3:68939430-68939449 None:intergenic 15.0%
!! TAAATCCATTAATTAAAATC+TGG - Chr3:68937761-68937780 None:intergenic 15.0%
!! TAACAATTGATATATTATTG+TGG - Chr3:68937412-68937431 None:intergenic 15.0%
!! TAATATTATAGTAAGATCAA+AGG - Chr3:68938648-68938667 None:intergenic 15.0%
!! TATAATAAAACAAAACAGAA+AGG + Chr3:68939255-68939274 MsG0380015353.01.T01:intron 15.0%
!! TTCTTTATTCTATATTCTAT+GGG + Chr3:68941326-68941345 MsG0380015353.01.T01:intron 15.0%
!! TTTATGTGATGTTTAATAAA+TGG + Chr3:68939476-68939495 MsG0380015353.01.T01:intron 15.0%
!! TTTCTTTATTCTATATTCTA+TGG + Chr3:68941325-68941344 MsG0380015353.01.T01:intron 15.0%
!!! ACTTTTTTTATAATACTTAC+TGG + Chr3:68937589-68937608 MsG0380015353.01.T01:intron 15.0%
!!! ATTTTCTAATTTTTTGACTT+TGG + Chr3:68939659-68939678 MsG0380015353.01.T01:intron 15.0%
!!! CATGTCTTTTATTTAAAAAA+TGG - Chr3:68939820-68939839 None:intergenic 15.0%
!!! TAATAATTTTTTGTTTTCGA+AGG + Chr3:68939967-68939986 MsG0380015353.01.T01:intron 15.0%
!!! TTTAAAATGCAATTTTTTTG+GGG - Chr3:68938308-68938327 None:intergenic 15.0%
!!! TTTTAAGTGTTAGTTTTTTA+TGG + Chr3:68939430-68939449 MsG0380015353.01.T01:intron 15.0%
!! AAAAATAGGTTATACCAAAA+AGG + Chr3:68937816-68937835 MsG0380015353.01.T01:intron 20.0%
!! AAAATTTGTCTTGATTTACA+TGG + Chr3:68938325-68938344 MsG0380015353.01.T01:intron 20.0%
!! AAATCTATACTTCCAATAAA+AGG - Chr3:68937851-68937870 None:intergenic 20.0%
!! AAGTTAAACTAATCAATTCA+AGG - Chr3:68939533-68939552 None:intergenic 20.0%
!! AATAAACAATGTAAAATCTC+AGG + Chr3:68939794-68939813 MsG0380015353.01.T01:intron 20.0%
!! AATAATTGAAGTGAGTTTAA+AGG - Chr3:68938239-68938258 None:intergenic 20.0%
!! AATCTATACTTCCAATAAAA+GGG - Chr3:68937850-68937869 None:intergenic 20.0%
!! AATTGATATATTATTGTGGA+TGG - Chr3:68937408-68937427 None:intergenic 20.0%
!! ACCTAATATAATTTGACATT+TGG + Chr3:68938463-68938482 MsG0380015353.01.T01:intron 20.0%
!! AGAACAATTTACACTTAAAA+GGG - Chr3:68937681-68937700 None:intergenic 20.0%
!! GTTTAATTCATATAAAAAGG+AGG - Chr3:68937719-68937738 None:intergenic 20.0%
!! TAGAACAATTTACACTTAAA+AGG - Chr3:68937682-68937701 None:intergenic 20.0%
!! TATAAACCCTTTATTATAAG+TGG + Chr3:68938535-68938554 MsG0380015353.01.T01:intron 20.0%
!! TCCAAATGTCAAATTATATT+AGG - Chr3:68938467-68938486 None:intergenic 20.0%
!! TGAAATACTCTCTTTAATAT+TGG - Chr3:68940038-68940057 None:intergenic 20.0%
!! TTATATGCACCAAATTTAAA+CGG + Chr3:68938836-68938855 MsG0380015353.01.T01:intron 20.0%
!! TTTAAGAATAAAATTGTCTG+AGG + Chr3:68937777-68937796 MsG0380015353.01.T01:intron 20.0%
!!! AACAATGTTGATTTTTAAAC+AGG - Chr3:68938136-68938155 None:intergenic 20.0%
!!! AATTTTTTTGGGGTAAATTT+AGG - Chr3:68938298-68938317 None:intergenic 20.0%
!!! ACAATGTTGATTTTTAAACA+GGG - Chr3:68938135-68938154 None:intergenic 20.0%
!!! ATCAACCAGATTTTAATTAA+TGG + Chr3:68937753-68937772 MsG0380015353.01.T01:intron 20.0%
!!! ATTTTTTCTTCTTCTTGTTT+TGG + Chr3:68939499-68939518 MsG0380015353.01.T01:intron 20.0%
!!! CTTTTTATTATGGAACATTA+TGG - Chr3:68938738-68938757 None:intergenic 20.0%
!!! GATGTTTTGTTTTTATTTTG+TGG - Chr3:68942174-68942193 None:intergenic 20.0%
!!! TAAATAGTAATTGTTTCTTG+AGG - Chr3:68942404-68942423 None:intergenic 20.0%
!!! TTCAATTTTCAAATGTAACA+GGG + Chr3:68940420-68940439 MsG0380015353.01.T01:intron 20.0%
!!! TTTAAATTTGGTGCATATAA+AGG - Chr3:68938836-68938855 None:intergenic 20.0%
!!! TTTCAATTTTCAAATGTAAC+AGG + Chr3:68940419-68940438 MsG0380015353.01.T01:intron 20.0%
!!! TTTGTTATACCAAAAACAAA+AGG + Chr3:68940122-68940141 MsG0380015353.01.T01:intron 20.0%
!!! TTTTACAAAAGCACAATTTA+AGG + Chr3:68940183-68940202 MsG0380015353.01.T01:intron 20.0%
! AAATTGTCTGAGGAAAATTT+AGG + Chr3:68937787-68937806 MsG0380015353.01.T01:intron 25.0%
! AACATCTCACATATTGTATT+CGG + Chr3:68940703-68940722 MsG0380015353.01.T01:CDS 25.0%
! AACTAAATTTCCAACAATCA+CGG - Chr3:68939360-68939379 None:intergenic 25.0%
! AAGACAAGAATCCATAATAT+TGG - Chr3:68941172-68941191 None:intergenic 25.0%
! AAGATCCAAACATTCATTTA+TGG + Chr3:68939860-68939879 MsG0380015353.01.T01:intron 25.0%
! AATCAATTGTATTATGTTGG+TGG + Chr3:68941048-68941067 MsG0380015353.01.T01:CDS 25.0%
! AATCATTTAACTCTATGTAG+TGG - Chr3:68940085-68940104 None:intergenic 25.0%
! AATTCCATATAAAATCTCAC+AGG + Chr3:68940855-68940874 MsG0380015353.01.T01:CDS 25.0%
! ACCTAATGTATATTGACATT+TGG + Chr3:68938399-68938418 MsG0380015353.01.T01:intron 25.0%
! ACTTAAACTCAAAATGCTAT+AGG - Chr3:68942254-68942273 None:intergenic 25.0%
! ACTTAATTCAGTTTATCTAC+TGG - Chr3:68942139-68942158 None:intergenic 25.0%
! AGAGTTAAATGATTGACTAA+AGG + Chr3:68940091-68940110 MsG0380015353.01.T01:intron 25.0%
! ATCAATTGTATTATGTTGGT+GGG + Chr3:68941049-68941068 MsG0380015353.01.T01:CDS 25.0%
! ATTCCATATAAAATCTCACA+GGG + Chr3:68940856-68940875 MsG0380015353.01.T01:CDS 25.0%
! CACAATCAATTGTATTATGT+TGG + Chr3:68941045-68941064 MsG0380015353.01.T01:CDS 25.0%
! CCACAAAAAGAAAAACATAA+AGG - Chr3:68939112-68939131 None:intergenic 25.0%
! CCTTATATACCAGAAAAAAT+AGG + Chr3:68940511-68940530 MsG0380015353.01.T01:CDS 25.0%
! GACAATAAGAATCAATGAAA+GGG - Chr3:68940328-68940347 None:intergenic 25.0%
! TCCAAATGTCAATATACATT+AGG - Chr3:68938403-68938422 None:intergenic 25.0%
! TCTATTCTTAATCTTCATCA+AGG + Chr3:68939016-68939035 MsG0380015353.01.T01:intron 25.0%
! TGACAATAAGAATCAATGAA+AGG - Chr3:68940329-68940348 None:intergenic 25.0%
! TGATAATTGAATTAAGAGCT+TGG + Chr3:68942596-68942615 MsG0380015353.01.T01:three_prime_UTR 25.0%
! TGTTATGCATTCTTATGATA+TGG + Chr3:68941095-68941114 MsG0380015353.01.T01:CDS 25.0%
! TTAAAAAAAAAAGGAGGAAG+AGG + Chr3:68938920-68938939 MsG0380015353.01.T01:intron 25.0%
! TTCTAATTTACTTACCTGTT+TGG - Chr3:68937377-68937396 None:intergenic 25.0%
! TTGAACCATAAATGAATGTT+TGG - Chr3:68939868-68939887 None:intergenic 25.0%
! TTTGGTTGAAATTAATCACA+CGG + Chr3:68937194-68937213 MsG0380015353.01.T01:intron 25.0%
!! AGAGAATTGAACAATTTTGT+TGG - Chr3:68938777-68938796 None:intergenic 25.0%
!! ATGGGAAATTTACTGTTTTA+TGG + Chr3:68941344-68941363 MsG0380015353.01.T01:intron 25.0%
!! ATGGTCAATATCTATTTCTT+GGG + Chr3:68941582-68941601 MsG0380015353.01.T01:CDS 25.0%
!! CATTGAAATTGACATGTTTT+CGG + Chr3:68937433-68937452 MsG0380015353.01.T01:intron 25.0%
!! CCTTTATGTTTTTCTTTTTG+TGG + Chr3:68939109-68939128 MsG0380015353.01.T01:intron 25.0%
!! GAGAATTGAACAATTTTGTT+GGG - Chr3:68938776-68938795 None:intergenic 25.0%
!! TTAATGAAGACATTTGACTT+TGG - Chr3:68941486-68941505 None:intergenic 25.0%
!!! AAATGCTAAGAAGTGTTTTA+AGG + Chr3:68937964-68937983 MsG0380015353.01.T01:intron 25.0%
!!! AACATATGCGGATTTTTTTA+AGG - Chr3:68937657-68937676 None:intergenic 25.0%
!!! ACATATGCGGATTTTTTTAA+GGG - Chr3:68937656-68937675 None:intergenic 25.0%
!!! ACTACTAATCAGCATTTTTT+TGG + Chr3:68937176-68937195 MsG0380015353.01.T01:intron 25.0%
!!! CCTATTTTTTCTGGTATATA+AGG - Chr3:68940514-68940533 None:intergenic 25.0%
!!! CGTTTACTTTTTCAAATTAG+CGG + Chr3:68937254-68937273 MsG0380015353.01.T01:intron 25.0%
!!! GATTAGTTGTTTTTGTTGTT+CGG + Chr3:68942426-68942445 MsG0380015353.01.T01:three_prime_UTR 25.0%
!!! TGATTTGACTGTTTTAAATC+AGG + Chr3:68942295-68942314 MsG0380015353.01.T01:intron 25.0%
AACACAGTAACTAAATTCTC+GGG - Chr3:68941012-68941031 None:intergenic 30.0%
AATATTCCATCTGCAGAATT+AGG - Chr3:68938976-68938995 None:intergenic 30.0%
AATTTACCTAATTCTGCAGA+TGG + Chr3:68938967-68938986 MsG0380015353.01.T01:intron 30.0%
ACAATATGTGAGATGTTTGT+AGG - Chr3:68940700-68940719 None:intergenic 30.0%
ACTTAAAAGGGAAACATATG+CGG - Chr3:68937669-68937688 None:intergenic 30.0%
AGAAAAAGATGAATCAAGAC+CGG + Chr3:68940449-68940468 MsG0380015353.01.T01:CDS 30.0%
AGGAAAGAAAGATATGAGAA+TGG - Chr3:68936953-68936972 None:intergenic 30.0%
AGTACATTCTTCCAATATTC+TGG - Chr3:68941898-68941917 None:intergenic 30.0%
ATATTGACATTTGGACATGA+TGG + Chr3:68938408-68938427 MsG0380015353.01.T01:intron 30.0%
ATGTCGACCACTTATAATAA+AGG - Chr3:68938545-68938564 None:intergenic 30.0%
ATTACAAACCACCTAACATT+TGG - Chr3:68940964-68940983 None:intergenic 30.0%
ATTTACTTACCTGTTTGGTT+TGG - Chr3:68937372-68937391 None:intergenic 30.0%
ATTTAGCTGTTTGTCCAAAA+AGG - Chr3:68941969-68941988 None:intergenic 30.0%
CAACACAGTAACTAAATTCT+CGG - Chr3:68941013-68941032 None:intergenic 30.0%
CTCAATAAGGATATAGTACA+AGG + Chr3:68936784-68936803 MsG0380015353.01.T01:CDS 30.0%
GAGAATTTAGTTACTGTGTT+GGG + Chr3:68941012-68941031 MsG0380015353.01.T01:CDS 30.0%
GATAAGATATGAAGAGTTTC+TGG + Chr3:68942031-68942050 MsG0380015353.01.T01:intron 30.0%
GGAAAGAAAGATATGAGAAT+GGG - Chr3:68936952-68936971 None:intergenic 30.0%
GGTAAATTTAGGTATATGTG+TGG - Chr3:68938287-68938306 None:intergenic 30.0%
GGTTTATATATTCCAACAGA+TGG - Chr3:68938523-68938542 None:intergenic 30.0%
GTTTCATTCTCAATAAGAGT+TGG + Chr3:68940541-68940560 MsG0380015353.01.T01:CDS 30.0%
TAGTACAAGGTTTGAATGAT+TGG + Chr3:68936797-68936816 MsG0380015353.01.T01:CDS 30.0%
TATTGACATTTGGACATGAT+GGG + Chr3:68938409-68938428 MsG0380015353.01.T01:intron 30.0%
TCATATTAAGATTGTTGCCA+AGG + Chr3:68939284-68939303 MsG0380015353.01.T01:intron 30.0%
TGATCCAGGAAAAATATAGA+TGG - Chr3:68941751-68941770 None:intergenic 30.0%
TGTATAACATGTAAATGCTC+CGG - Chr3:68940646-68940665 None:intergenic 30.0%
TGTCGACCACTTATAATAAA+GGG - Chr3:68938544-68938563 None:intergenic 30.0%
TTATCACTTCAAAACAGAAG+TGG - Chr3:68942582-68942601 None:intergenic 30.0%
TTCTCATATCTTTCTTTCCT+TGG + Chr3:68936953-68936972 MsG0380015353.01.T01:CDS 30.0%
TTTGACATTTGGACATGATT+AGG + Chr3:68938474-68938493 MsG0380015353.01.T01:intron 30.0%
! AAATGTTAGGTGGTTTGTAA+TGG + Chr3:68940963-68940982 MsG0380015353.01.T01:CDS 30.0%
! AATAAAAAGTGTACCCTACA+AGG + Chr3:68938749-68938768 MsG0380015353.01.T01:intron 30.0%
! AATGTTAGGTGGTTTGTAAT+GGG + Chr3:68940964-68940983 MsG0380015353.01.T01:CDS 30.0%
! ATCATAGCTTGTATGCAAAT+AGG + Chr3:68939198-68939217 MsG0380015353.01.T01:intron 30.0%
! ATCTATATTTTTCCTGGATC+AGG + Chr3:68941750-68941769 MsG0380015353.01.T01:CDS 30.0%
! ATTTAAGGTGTATAGCTTCT+AGG + Chr3:68940198-68940217 MsG0380015353.01.T01:intron 30.0%
! CATTCTTATGATATGGCTTT+TGG + Chr3:68941102-68941121 MsG0380015353.01.T01:CDS 30.0%
! CTTGTTCATGTTTTTCATCT+GGG + Chr3:68939049-68939068 MsG0380015353.01.T01:intron 30.0%
! GATATGTGTTTAGAGTTTAG+TGG - Chr3:68937005-68937024 None:intergenic 30.0%
! GATGGTCAATATCTATTTCT+TGG + Chr3:68941581-68941600 MsG0380015353.01.T01:CDS 30.0%
! GTTTGTAGGTATTGTATCAA+TGG - Chr3:68940686-68940705 None:intergenic 30.0%
! TCTTGTTCATGTTTTTCATC+TGG + Chr3:68939048-68939067 MsG0380015353.01.T01:intron 30.0%
! TGGTCAATATCTATTTCTTG+GGG + Chr3:68941583-68941602 MsG0380015353.01.T01:CDS 30.0%
! TTTTCGGATCTTATATGAGA+AGG + Chr3:68937449-68937468 MsG0380015353.01.T01:intron 30.0%
!! AAACAAAAGGTATCTGAGTT+TGG + Chr3:68940135-68940154 MsG0380015353.01.T01:intron 30.0%
!! GTAGGGTACACTTTTTATTA+TGG - Chr3:68938748-68938767 None:intergenic 30.0%
!! GTATGTTTTGTTATACCTGA+TGG - Chr3:68941284-68941303 None:intergenic 30.0%
!! TACATCATTGTTGATAACAG+CGG + Chr3:68941624-68941643 MsG0380015353.01.T01:CDS 30.0%
!!! ACTCAGATACCTTTTGTTTT+TGG - Chr3:68940134-68940153 None:intergenic 30.0%
ACACAGTAACTAAATTCTCG+GGG - Chr3:68941011-68941030 None:intergenic 35.0%
ACATAAATTCCAGCAAAAGC+TGG - Chr3:68939598-68939617 None:intergenic 35.0%
ACCAGAAAAAATAGGTGACT+TGG + Chr3:68940519-68940538 MsG0380015353.01.T01:CDS 35.0%
ATGAAATGCCATACCAACAT+AGG + Chr3:68938706-68938725 MsG0380015353.01.T01:intron 35.0%
ATGACTCAGGATCATTGTAA+GGG + Chr3:68938865-68938884 MsG0380015353.01.T01:intron 35.0%
ATGGAGTATATATAGCACGA+TGG + Chr3:68938344-68938363 MsG0380015353.01.T01:intron 35.0%
ATTATGGTCATGTCCTATGT+TGG - Chr3:68938722-68938741 None:intergenic 35.0%
CAAGTGATATCGATGCTATA+AGG - Chr3:68940579-68940598 None:intergenic 35.0%
CATAAATTCCAGCAAAAGCT+GGG - Chr3:68939597-68939616 None:intergenic 35.0%
CATATAAAATCTCACAGGGA+TGG + Chr3:68940860-68940879 MsG0380015353.01.T01:CDS 35.0%
CATATCTTTCTTTCCTTGGT+TGG + Chr3:68936957-68936976 MsG0380015353.01.T01:intron 35.0%
CATCATTGGCCGTTTAAATT+TGG - Chr3:68938848-68938867 None:intergenic 35.0%
CATCGAGTATTAAACGTGAA+AGG - Chr3:68941703-68941722 None:intergenic 35.0%
CCTTGGTCAATAAGAAAGTT+GGG + Chr3:68940224-68940243 MsG0380015353.01.T01:intron 35.0%
CGAGAATTTAGTTACTGTGT+TGG + Chr3:68941011-68941030 MsG0380015353.01.T01:CDS 35.0%
CTATAAGAGACATGTTGACA+AGG + Chr3:68941804-68941823 MsG0380015353.01.T01:CDS 35.0%
CTTGTCAACATGTCTCTTAT+AGG - Chr3:68941806-68941825 None:intergenic 35.0%
CTTTCACGTTTAATACTCGA+TGG + Chr3:68941701-68941720 MsG0380015353.01.T01:CDS 35.0%
GAAGTGTGCATATCAGAATA+AGG + Chr3:68942369-68942388 MsG0380015353.01.T01:CDS 35.0%
GAATAGTTTAAGCCTGTGTT+TGG + Chr3:68937226-68937245 MsG0380015353.01.T01:intron 35.0%
GATACTTGGAGACAATTCAT+TGG - Chr3:68936917-68936936 None:intergenic 35.0%
GCTGTGGAAATTAAAAAGGT+TGG + Chr3:68938369-68938388 MsG0380015353.01.T01:intron 35.0%
GGACCTATTGTATCTCAAAA+TGG - Chr3:68940017-68940036 None:intergenic 35.0%
GGATGCTGTGGAAATTAAAA+AGG + Chr3:68938365-68938384 MsG0380015353.01.T01:intron 35.0%
GTTTAGTGGCCCTAAAAATA+AGG - Chr3:68936991-68937010 None:intergenic 35.0%
TACTCCTAATTCGTTTACAC+AGG - Chr3:68941238-68941257 None:intergenic 35.0%
TATGGAATTAGCATATCGTC+CGG - Chr3:68940844-68940863 None:intergenic 35.0%
TCACTGAGATTGTCTTTGAT+TGG - Chr3:68937049-68937068 None:intergenic 35.0%
TCCTTGGTCAATAAGAAAGT+TGG + Chr3:68940223-68940242 MsG0380015353.01.T01:intron 35.0%
TCTTTCAGCTTGACATTAGA+GGG + Chr3:68941374-68941393 MsG0380015353.01.T01:intron 35.0%
TTCTTTCAGCTTGACATTAG+AGG + Chr3:68941373-68941392 MsG0380015353.01.T01:intron 35.0%
! AAAGCGTTTGTTACGATCAT+AGG + Chr3:68941554-68941573 MsG0380015353.01.T01:CDS 35.0%
! AAAGGGATGCATAACCTTTT+TGG - Chr3:68937833-68937852 None:intergenic 35.0%
! AATTTTGTTGGGTCCTTGTA+GGG - Chr3:68938765-68938784 None:intergenic 35.0%
! AGAAGTTAAGTGAGTCTTGT+AGG + Chr3:68942462-68942481 MsG0380015353.01.T01:three_prime_UTR 35.0%
! AGCTAGACTAGCCAATATTA+TGG + Chr3:68941158-68941177 MsG0380015353.01.T01:CDS 35.0%
! AGGTTATGCATCCCTTTTAT+TGG + Chr3:68937836-68937855 MsG0380015353.01.T01:intron 35.0%
! CATCCCTGTGAGATTTTATA+TGG - Chr3:68940862-68940881 None:intergenic 35.0%
! CATTGCAGACGTTTAAAACA+TGG + Chr3:68941659-68941678 MsG0380015353.01.T01:CDS 35.0%
! GAAACCAAAGAATTTGAAGC+CGG + Chr3:68940822-68940841 MsG0380015353.01.T01:CDS 35.0%
! TATCTGAGTTTGGCTTATTG+TGG + Chr3:68940145-68940164 MsG0380015353.01.T01:intron 35.0%
! TCTTATGATATGGCTTTTGG+TGG + Chr3:68941105-68941124 MsG0380015353.01.T01:CDS 35.0%
! TGTAATGGGAGATGATGATA+CGG + Chr3:68940978-68940997 MsG0380015353.01.T01:CDS 35.0%
! TTTTAAATCAGGTACCACGT+AGG + Chr3:68942306-68942325 MsG0380015353.01.T01:intron 35.0%
!! ATGGTTCTGATCAAAGAGTT+TGG + Chr3:68941211-68941230 MsG0380015353.01.T01:CDS 35.0%
!! CATGTTTTAAACGTCTGCAA+TGG - Chr3:68941661-68941680 None:intergenic 35.0%
!! GTTTACGAAAGCTTTAGACT+TGG + Chr3:68940934-68940953 MsG0380015353.01.T01:CDS 35.0%
!! TGGTTCTGATCAAAGAGTTT+GGG + Chr3:68941212-68941231 MsG0380015353.01.T01:CDS 35.0%
!! TTCTAGCTTCTTCATTTCCA+CGG + Chr3:68937308-68937327 MsG0380015353.01.T01:intron 35.0%
!!! ACCAAGTCACCTATTTTTTC+TGG - Chr3:68940523-68940542 None:intergenic 35.0%
!!! GAGCCATTTTGAGATACAAT+AGG + Chr3:68940011-68940030 MsG0380015353.01.T01:intron 35.0%
!!! GATGTTTTGTTTCATTGCAG+AGG + Chr3:68939152-68939171 MsG0380015353.01.T01:intron 35.0%
AAAGATGAATCAAGACCGGA+TGG + Chr3:68940453-68940472 MsG0380015353.01.T01:CDS 40.0%
AAGAGACATGTTGACAAGGA+AGG + Chr3:68941808-68941827 MsG0380015353.01.T01:CDS 40.0%
AAGCATGTTACATCGTACCT+TGG - Chr3:68939304-68939323 None:intergenic 40.0%
AAGGTTTGAATGATTGGCGA+AGG + Chr3:68936803-68936822 MsG0380015353.01.T01:CDS 40.0%
ACATGTAAATGCTCCGGTAA+TGG - Chr3:68940640-68940659 None:intergenic 40.0%
AGTGGCCCTAAAAATAAGGT+GGG - Chr3:68936987-68937006 None:intergenic 40.0%
ATATTCTGGATCCAGCTTCA+AGG - Chr3:68941884-68941903 None:intergenic 40.0%
ATGGTTGAAAGTGAGAGAGA+GGG - Chr3:68941930-68941949 None:intergenic 40.0%
CAATGATCCTGAGTCATCAT+TGG - Chr3:68938862-68938881 None:intergenic 40.0%
CAATGCTGCAACTTTATGGA+TGG + Chr3:68942329-68942348 MsG0380015353.01.T01:CDS 40.0%
CCCAACTTTCTTATTGACCA+AGG - Chr3:68940227-68940246 None:intergenic 40.0%
CTGGAGATCCAACACTTATT+AGG + Chr3:68936874-68936893 MsG0380015353.01.T01:CDS 40.0%
CTGGTTTAGCGAATGTTGAA+TGG - Chr3:68940606-68940625 None:intergenic 40.0%
GACATTAGAGGGAATCCATA+TGG + Chr3:68941385-68941404 MsG0380015353.01.T01:CDS 40.0%
GAGATCCAACACTTATTAGG+TGG + Chr3:68936877-68936896 MsG0380015353.01.T01:CDS 40.0%
GATCATGACAAGATTCCATC+CGG - Chr3:68940471-68940490 None:intergenic 40.0%
GATGACTCAGGATCATTGTA+AGG + Chr3:68938864-68938883 MsG0380015353.01.T01:intron 40.0%
GGAAAAATATAGATGGCTGC+TGG - Chr3:68941744-68941763 None:intergenic 40.0%
GGCTCAACTATAGAGTGAAA+GGG - Chr3:68939996-68940015 None:intergenic 40.0%
GTATAGCTTCTAGGTTTCCT+TGG + Chr3:68940207-68940226 MsG0380015353.01.T01:intron 40.0%
GTATCTCTTACCAGAGAAAG+AGG + Chr3:68941255-68941274 MsG0380015353.01.T01:CDS 40.0%
TAAAGTTTCTGCCTTGAAGC+TGG + Chr3:68941870-68941889 MsG0380015353.01.T01:CDS 40.0%
TAGGCAATGCTGCAACTTTA+TGG + Chr3:68942325-68942344 MsG0380015353.01.T01:CDS 40.0%
TAGTGGCCCTAAAAATAAGG+TGG - Chr3:68936988-68937007 None:intergenic 40.0%
TATGAGAATGGGACCAGTAA+TGG - Chr3:68936941-68936960 None:intergenic 40.0%
TATGGTTGAAAGTGAGAGAG+AGG - Chr3:68941931-68941950 None:intergenic 40.0%
TCTCCAAGTATCACCATTAC+TGG + Chr3:68936925-68936944 MsG0380015353.01.T01:CDS 40.0%
TGAAGCTGGATCCAGAATAT+TGG + Chr3:68941884-68941903 MsG0380015353.01.T01:CDS 40.0%
TGCTACCACCTAATAAGTGT+TGG - Chr3:68936885-68936904 None:intergenic 40.0%
TGGCTCAACTATAGAGTGAA+AGG - Chr3:68939997-68940016 None:intergenic 40.0%
TGGTCAATAAGAAAGTTGGG+TGG + Chr3:68940227-68940246 MsG0380015353.01.T01:intron 40.0%
! AACAAAGCACTTCCATCTGT+TGG + Chr3:68938508-68938527 MsG0380015353.01.T01:intron 40.0%
! ACACACACGAAGTTCCTTTT+TGG + Chr3:68941952-68941971 MsG0380015353.01.T01:intron 40.0%
! CAATTTTGTTGGGTCCTTGT+AGG - Chr3:68938766-68938785 None:intergenic 40.0%
! CATGAAAGTACACAGAGCTT+CGG - Chr3:68937137-68937156 None:intergenic 40.0%
! GAAGACATTTGACTTTGGTC+CGG - Chr3:68941481-68941500 None:intergenic 40.0%
! GAAGTGCTTTGTTGTATCAG+TGG - Chr3:68938501-68938520 None:intergenic 40.0%
! GCAGCCATCTATATTTTTCC+TGG + Chr3:68941744-68941763 MsG0380015353.01.T01:CDS 40.0%
! TATGATATGGCTTTTGGTGG+TGG + Chr3:68941108-68941127 MsG0380015353.01.T01:CDS 40.0%
! TATGGATGGAGGAAGCATAA+AGG + Chr3:68942343-68942362 MsG0380015353.01.T01:CDS 40.0%
!! GACTTGGTTTGCCAAATGTT+AGG + Chr3:68940950-68940969 MsG0380015353.01.T01:CDS 40.0%
!! TACTTACCTGTTTGGTTTGG+CGG - Chr3:68937369-68937388 None:intergenic 40.0%
!! TTGGTTTGCCAAATGTTAGG+TGG + Chr3:68940953-68940972 MsG0380015353.01.T01:CDS 40.0%
!!! CATGTTTTGAGACGTGTGTT+TGG + Chr3:68937335-68937354 MsG0380015353.01.T01:intron 40.0%
!!! CGGATTTTTTTAAGGGACTG+CGG - Chr3:68937649-68937668 None:intergenic 40.0%
!!! CTGTTGTTTTCCGTGATTGT+TGG + Chr3:68939347-68939366 MsG0380015353.01.T01:intron 40.0%
!!! GACCACCCACCTTATTTTTA+GGG + Chr3:68936979-68936998 MsG0380015353.01.T01:intron 40.0%
AAAGTACACAGAGCTTCGGT+TGG - Chr3:68937133-68937152 None:intergenic 45.0%
ACAAAACCTCTGCAAGCAGT+TGG - Chr3:68940790-68940809 None:intergenic 45.0%
AGACCGATGGTTTCCATTAC+CGG + Chr3:68940624-68940643 MsG0380015353.01.T01:CDS 45.0%
AGGAACTTCGTGTGTGTGTA+TGG - Chr3:68941949-68941968 None:intergenic 45.0%
ATATAGCACGATGGATGCTG+TGG + Chr3:68938353-68938372 MsG0380015353.01.T01:intron 45.0%
CAGAGAAAGAGGATTCCATC+AGG + Chr3:68941266-68941285 MsG0380015353.01.T01:CDS 45.0%
CATATTGTATTCGGCATCGC+TGG + Chr3:68940712-68940731 MsG0380015353.01.T01:CDS 45.0%
CGAAGCTCTGTGTACTTTCA+TGG + Chr3:68937135-68937154 MsG0380015353.01.T01:intron 45.0%
CTGATGGAATCCTCTTTCTC+TGG - Chr3:68941268-68941287 None:intergenic 45.0%
GGACCAGTAATGGTGATACT+TGG - Chr3:68936931-68936950 None:intergenic 45.0%
GGTCATGTCCTATGTTGGTA+TGG - Chr3:68938717-68938736 None:intergenic 45.0%
GGTGCAATTGATCAAGGTGA+TGG - Chr3:68941450-68941469 None:intergenic 45.0%
GTAAACGTCGTTCCAAACAC+AGG - Chr3:68937241-68937260 None:intergenic 45.0%
GTCTCAAAACATGTCTACCG+TGG - Chr3:68937328-68937347 None:intergenic 45.0%
GTGAAACTGCCGCAACTAAT+CGG - Chr3:68940261-68940280 None:intergenic 45.0%
GTTACGATCATAGGCGAAGA+TGG + Chr3:68941563-68941582 MsG0380015353.01.T01:CDS 45.0%
TAAACGGCCAATGATGACTC+AGG + Chr3:68938852-68938871 MsG0380015353.01.T01:intron 45.0%
TCACCTTGATCAATTGCACC+CGG + Chr3:68941450-68941469 MsG0380015353.01.T01:CDS 45.0%
TCGTCCGGCTTCAAATTCTT+TGG - Chr3:68940829-68940848 None:intergenic 45.0%
TGCTGCAACTTTATGGATGG+AGG + Chr3:68942332-68942351 MsG0380015353.01.T01:CDS 45.0%
TGGGCCTGTGTAAACGAATT+AGG + Chr3:68941231-68941250 MsG0380015353.01.T01:CDS 45.0%
TTGTTTCATTGCAGAGGCAG+AGG + Chr3:68939158-68939177 MsG0380015353.01.T01:intron 45.0%
TTTCCTGGATCAGGTTAGCA+AGG + Chr3:68941759-68941778 MsG0380015353.01.T01:CDS 45.0%
TTTGCTGCACTATCCTTGCA+GGG - Chr3:68941537-68941556 None:intergenic 45.0%
! AAGAAGTGCAAGAGAGCAGA+TGG + Chr3:68941832-68941851 MsG0380015353.01.T01:CDS 45.0%
! CTGTAAATCCCAGCTTTTGC+TGG + Chr3:68939586-68939605 MsG0380015353.01.T01:intron 45.0%
! GAAGCACTCTCATGGTAGTA+GGG + Chr3:68939906-68939925 MsG0380015353.01.T01:intron 45.0%
! GAGACAATTCATTGGCTGAC+TGG - Chr3:68936909-68936928 None:intergenic 45.0%
! GATGGAGGAAGCATAAAGGA+TGG + Chr3:68942347-68942366 MsG0380015353.01.T01:CDS 45.0%
! GTTTGGCTTATTGTGGCTAG+TGG + Chr3:68940152-68940171 MsG0380015353.01.T01:intron 45.0%
!! AGAAGCACTCTCATGGTAGT+AGG + Chr3:68939905-68939924 MsG0380015353.01.T01:intron 45.0%
!! GAAGAGAAGAAGCACTCTCA+TGG + Chr3:68939898-68939917 MsG0380015353.01.T01:intron 45.0%
!! TCGCTGGTTCATCGAAAATG+TGG + Chr3:68940728-68940747 MsG0380015353.01.T01:CDS 45.0%
!!! GGACCACCCACCTTATTTTT+AGG + Chr3:68936978-68936997 MsG0380015353.01.T01:intron 45.0%
!!! TAGAAAATAAAAAATATTTT+TGG - Chr3:68939647-68939666 None:intergenic 5.0%
AAACTGCCGCAACTAATCGG+TGG - Chr3:68940258-68940277 None:intergenic 50.0%
AAAGTGAGAGAGAGGGAGAG+AGG - Chr3:68941923-68941942 None:intergenic 50.0%
AAGTGAGAGAGAGGGAGAGA+GGG - Chr3:68941922-68941941 None:intergenic 50.0%
AAGTTGCAGCATTGCCTACG+TGG - Chr3:68942323-68942342 None:intergenic 50.0%
ACACCGGGTGCAATTGATCA+AGG - Chr3:68941456-68941475 None:intergenic 50.0%
ACATGGCGAAGTTCGAGTGA+TGG + Chr3:68941676-68941695 MsG0380015353.01.T01:CDS 50.0%
AGACTGTGTTGGAACGTGCA+AGG + Chr3:68938806-68938825 MsG0380015353.01.T01:intron 50.0%
CATCTGCAGTTCGGATATCG+CGG + Chr3:68940908-68940927 MsG0380015353.01.T01:CDS 50.0%
CATTCGCTAAACCAGACCGA+TGG + Chr3:68940611-68940630 MsG0380015353.01.T01:CDS 50.0%
CTTCTCACCACAGACTGTGT+TGG + Chr3:68938795-68938814 MsG0380015353.01.T01:intron 50.0%
CTTTGCTGCACTATCCTTGC+AGG - Chr3:68941538-68941557 None:intergenic 50.0%
GATTGGCGAAGGTTTACCTG+TGG + Chr3:68936814-68936833 MsG0380015353.01.T01:CDS 50.0%
GGCCCTAAAAATAAGGTGGG+TGG - Chr3:68936984-68937003 None:intergenic 50.0%
TCAATTGCACCCGGTGTTTC+CGG + Chr3:68941459-68941478 MsG0380015353.01.T01:CDS 50.0%
TCTCCCTCCTGTGAAACGAT+TGG + Chr3:68942638-68942657 MsG0380015353.01.T01:three_prime_UTR 50.0%
TGACTTTGGTCCGGAAACAC+CGG - Chr3:68941472-68941491 None:intergenic 50.0%
TGCACTCTGCATCTGCAGTT+CGG + Chr3:68940899-68940918 MsG0380015353.01.T01:CDS 50.0%
TGCGCGGCTAAAAGACCATA+TGG - Chr3:68941403-68941422 None:intergenic 50.0%
TGGAATCCAACTGCTTGCAG+AGG + Chr3:68940781-68940800 MsG0380015353.01.T01:CDS 50.0%
TTTCATTGCAGAGGCAGAGG+AGG + Chr3:68939161-68939180 MsG0380015353.01.T01:intron 50.0%
! GTGCATCCACCGATTAGTTG+CGG + Chr3:68940249-68940268 MsG0380015353.01.T01:intron 50.0%
! TGGTGGGAATTCTGAGAGTG+TGG + Chr3:68941065-68941084 MsG0380015353.01.T01:CDS 50.0%
!! AGGTGATGGAGTGACACAAG+CGG - Chr3:68941436-68941455 None:intergenic 50.0%
!! CACAGGGATGGACTAAGTTC+AGG + Chr3:68940872-68940891 MsG0380015353.01.T01:CDS 50.0%
!! CTGCTTGCAGAGGTTTTGTC+TGG + Chr3:68940791-68940810 MsG0380015353.01.T01:CDS 50.0%
!! GCTCCGGTAATGGAAACCAT+CGG - Chr3:68940630-68940649 None:intergenic 50.0%
!! GGTAATGGAAACCATCGGTC+TGG - Chr3:68940625-68940644 None:intergenic 50.0%
!! TACCTGTTTGGTTTGGCGGT+GGG - Chr3:68937365-68937384 None:intergenic 50.0%
!! TTACCTGTTTGGTTTGGCGG+TGG - Chr3:68937366-68937385 None:intergenic 50.0%
!!! GATATGGCTTTTGGTGGTGG+TGG + Chr3:68941111-68941130 MsG0380015353.01.T01:CDS 50.0%
ATGGCTGCTGGCATACGTCA+GGG - Chr3:68941732-68941751 None:intergenic 55.0%
CATACGACCTTGACCCTGCA+AGG + Chr3:68941521-68941540 MsG0380015353.01.T01:CDS 55.0%
GACTTTGGTCCGGAAACACC+GGG - Chr3:68941471-68941490 None:intergenic 55.0%
GCACGTTCCAACACAGTCTG+TGG - Chr3:68938805-68938824 None:intergenic 55.0%
GCACTATCCTTGCAGGGTCA+AGG - Chr3:68941531-68941550 None:intergenic 55.0%
TAAGGTGGGTGGTCCAACCA+AGG - Chr3:68936973-68936992 None:intergenic 55.0%
TCGCCTTGCTAACCTGATCC+AGG - Chr3:68941765-68941784 None:intergenic 55.0%
TGGATCAGGTTAGCAAGGCG+AGG + Chr3:68941764-68941783 MsG0380015353.01.T01:CDS 55.0%
! GACACGACTTGGAAGTCCAC+AGG - Chr3:68936833-68936852 None:intergenic 55.0%
!! ACCTGTTTGGTTTGGCGGTG+GGG - Chr3:68937364-68937383 None:intergenic 55.0%
ACCCCACCGCCAAACCAAAC+AGG + Chr3:68937360-68937379 MsG0380015353.01.T01:intron 60.0%
CAGGTTAGCAAGGCGAGGAC+TGG + Chr3:68941769-68941788 MsG0380015353.01.T01:CDS 60.0%
CCAAGTCGTGTCGTGCGTGA+TGG + Chr3:68936841-68936860 MsG0380015353.01.T01:CDS 60.0%
CCATCACGCACGACACGACT+TGG - Chr3:68936844-68936863 None:intergenic 60.0%
GATGGCTGCTGGCATACGTC+AGG - Chr3:68941733-68941752 None:intergenic 60.0%
! AGTGACACAAGCGGTGCCAG+AGG - Chr3:68941427-68941446 None:intergenic 60.0%
! GTGACACAAGCGGTGCCAGA+GGG - Chr3:68941426-68941445 None:intergenic 60.0%
! TCTTTTAGCCGCGCACCCTC+TGG + Chr3:68941408-68941427 MsG0380015353.01.T01:CDS 60.0%
!! GCGTGATGGACTCACTGGAC+TGG + Chr3:68936855-68936874 MsG0380015353.01.T01:CDS 60.0%
!! GTCGTGCGTGATGGACTCAC+TGG + Chr3:68936850-68936869 MsG0380015353.01.T01:CDS 60.0%
! AAGCGGTGCCAGAGGGTGCG+CGG - Chr3:68941419-68941438 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 68936778 68942657 68936778 ID=MsG0380015353.01;Name=MsG0380015353.01
Chr3 mRNA 68936778 68942657 68936778 ID=MsG0380015353.01.T01;Parent=MsG0380015353.01;Name=MsG0380015353.01.T01;_AED=0.48;_eAED=0.54;_QI=0|0.66|0.75|1|1|1|4|233|560
Chr3 exon 68936778 68936974 68936778 ID=MsG0380015353.01.T01:exon:13656;Parent=MsG0380015353.01.T01
Chr3 exon 68940441 68941287 68940441 ID=MsG0380015353.01.T01:exon:13657;Parent=MsG0380015353.01.T01
Chr3 exon 68941382 68941912 68941382 ID=MsG0380015353.01.T01:exon:13658;Parent=MsG0380015353.01.T01
Chr3 exon 68942317 68942657 68942317 ID=MsG0380015353.01.T01:exon:13659;Parent=MsG0380015353.01.T01
Chr3 CDS 68936778 68936974 68936778 ID=MsG0380015353.01.T01:cds;Parent=MsG0380015353.01.T01
Chr3 CDS 68940441 68941287 68940441 ID=MsG0380015353.01.T01:cds;Parent=MsG0380015353.01.T01
Chr3 CDS 68941382 68941912 68941382 ID=MsG0380015353.01.T01:cds;Parent=MsG0380015353.01.T01
Chr3 CDS 68942317 68942424 68942317 ID=MsG0380015353.01.T01:cds;Parent=MsG0380015353.01.T01
Chr3 three_prime_UTR 68942425 68942657 68942425 ID=MsG0380015353.01.T01:three_prime_utr;Parent=MsG0380015353.01.T01
Gene Sequence

>MsG0380015353.01.T01

ATGAGACTCAATAAGGATATAGTACAAGGTTTGAATGATTGGCGAAGGTTTACCTGTGGACTTCCAAGTCGTGTCGTGCGTGATGGACTCACTGGACTGGAGATCCAACACTTATTAGGTGGTAGCAGCCAGTCAGCCAATGAATTGTCTCCAAGTATCACCATTACTGGTCCCATTCTCATATCTTTCTTTCCTTGGGTGAAGAAGAAAAAGATGAATCAAGACCGGATGGAATCTTGTCATGATCATCTTAAAATAACAAGATTACCTTATATACCAGAAAAAATAGGTGACTTGGTTTCATTCTCAATAAGAGTTGGCATAATTATCTGCCTTATAGCATCGATATCACTTGCTATCCATTCAACATTCGCTAAACCAGACCGATGGTTTCCATTACCGGAGCATTTACATGTTATACAGAATGTTTCAGTCATTGCCATTGATACAATACCTACAAACATCTCACATATTGTATTCGGCATCGCTGGTTCATCGAAAATGTGGCATAGCCGTAGCAACTACAGCAAGCTTTGGTGGAATCCAACTGCTTGCAGAGGTTTTGTCTGGTTCGACAAGAAACCAAAGAATTTGAAGCCGGACGATATGCTAATTCCATATAAAATCTCACAGGGATGGACTAAGTTCAGGTACTTGCACTCTGCATCTGCAGTTCGGATATCGCGGATAGTTTACGAAAGCTTTAGACTTGGTTTGCCAAATGTTAGGTGGTTTGTAATGGGAGATGATGATACGGTGTTTTTCCCCGAGAATTTAGTTACTGTGTTGGGAAAATATGATCACAATCAATTGTATTATGTTGGTGGGAATTCTGAGAGTGTGGAACAAGATGTTATGCATTCTTATGATATGGCTTTTGGTGGTGGTGGTATTGCAATCAGTTATGCATTAGCAGCTAGACTAGCCAATATTATGGATTCTTGTCTTCATAGATACTATTATTATTATGGTTCTGATCAAAGAGTTTGGGCCTGTGTAAACGAATTAGGAGTATCTCTTACCAGAGAAAGAGGATTCCATCAGCTTGACATTAGAGGGAATCCATATGGTCTTTTAGCCGCGCACCCTCTGGCACCGCTTGTGTCACTCCATCACCTTGATCAATTGCACCCGGTGTTTCCGGACCAAAGTCAAATGTCTTCATTAAAGAAACTCATCAGTGCATACGACCTTGACCCTGCAAGGATAGTGCAGCAAAGCGTTTGTTACGATCATAGGCGAAGATGGTCAATATCTATTTCTTGGGGCTACACAATACAAATCTATACATCATTGTTGATAACAGCGGATTTGCAGATGCCATTGCAGACGTTTAAAACATGGCGAAGTTCGAGTGATGGTCCTTTCACGTTTAATACTCGATGGATGAACCCTGACGTATGCCAGCAGCCATCTATATTTTTCCTGGATCAGGTTAGCAAGGCGAGGACTGGAAGTGTCACTACCTATAAGAGACATGTTGACAAGGAAGGAAAGAAGTGCAAGAGAGCAGATGGAGAAGTGCAGAGAATTAAAGTTTCTGCCTTGAAGCTGGATCCAGAATATTGGAAGAATGTACCACGTAGGCAATGCTGCAACTTTATGGATGGAGGAAGCATAAAGGATGGAAGTGTGCATATCAGAATAAGGAAGTGCAGACCTCAAGAAACAATTACTATTTAG
Protein sequence

>MsG0380015353.01.T01

MRLNKDIVQGLNDWRRFTCGLPSRVVRDGLTGLEIQHLLGGSSQSANELSPSITITGPILISFFPWVKKKKMNQDRMESCHDHLKITRLPYIPEKIGDLVSFSIRVGIIICLIASISLAIHSTFAKPDRWFPLPEHLHVIQNVSVIAIDTIPTNISHIVFGIAGSSKMWHSRSNYSKLWWNPTACRGFVWFDKKPKNLKPDDMLIPYKISQGWTKFRYLHSASAVRISRIVYESFRLGLPNVRWFVMGDDDTVFFPENLVTVLGKYDHNQLYYVGGNSESVEQDVMHSYDMAFGGGGIAISYALAARLANIMDSCLHRYYYYYGSDQRVWACVNELGVSLTRERGFHQLDIRGNPYGLLAAHPLAPLVSLHHLDQLHPVFPDQSQMSSLKKLISAYDLDPARIVQQSVCYDHRRRWSISISWGYTIQIYTSLLITADLQMPLQTFKTWRSSSDGPFTFNTRWMNPDVCQQPSIFFLDQVSKARTGSVTTYKRHVDKEGKKCKRADGEVQRIKVSALKLDPEYWKNVPRRQCCNFMDGGSIKDGSVHIRIRKCRPQETITI*