AlfalfaGEDB | MsG0780037963.01

M. sativa cultivar ZhongmuNo.1 / MsG0780037963.01

KEGG: K14488
GO: GO:0009733
PFAM: PF02519

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037963.01.T01	XP_013441979.1	90.84	131	12	0	1	131	20	150	3.16E-84	253

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037963.01.T01	O22150	48.148	135	63	3	1	128	17	151	5.03E-38	129

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037963.01.T01	G7J151	90.840	131	12	0	1	131	20	150	1.51e-84	253

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048273.01	MsG0780037963.01	0.829456	5.096925e-55	5.219196e-52
MsG0080048274.01	MsG0780037963.01	0.843031	1.798578e-58	2.777818e-55
MsG0080048401.01	MsG0780037963.01	0.805492	1.300338e-49	6.889065e-47
MsG0080048694.01	MsG0780037963.01	0.802070	6.678151e-49	3.240825e-46
MsG0080048695.01	MsG0780037963.01	0.803349	3.637794e-49	1.823801e-46
MsG0080048887.01	MsG0780037963.01	0.840773	7.103567e-58	1.022449e-54
MsG0080048896.01	MsG0780037963.01	0.844548	7.060963e-59	1.143919e-55
MsG0080048909.01	MsG0780037963.01	0.809931	1.482542e-50	8.818734e-48
MsG0080048969.01	MsG0780037963.01	0.840079	1.078753e-57	1.519838e-54
MsG0080048992.01	MsG0780037963.01	0.856945	2.282363e-62	5.539457e-59

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037963.01.T01	MTR_0388s0020	90.840	131	12	0	1	131	20	150	3.83e-88	253
MsG0780037963.01.T01	MTR_4g025830	52.941	136	51	3	4	128	18	151	4.18e-42	137
MsG0780037963.01.T01	MTR_7g118010	60.294	68	26	1	55	122	22	88	3.01e-24	89.7
MsG0780037963.01.T01	MTR_3g092220	50.000	74	36	1	55	128	32	104	9.36e-21	81.3
MsG0780037963.01.T01	MTR_8g026730	55.882	68	29	1	55	122	26	92	2.12e-20	80.1
MsG0780037963.01.T01	MTR_3g084250	49.398	83	37	3	42	122	10	89	1.81e-19	77.4
MsG0780037963.01.T01	MTR_4g072240	44.706	85	42	3	38	120	7	88	2.61e-18	74.3
MsG0780037963.01.T01	MTR_4g072500	42.045	88	46	3	37	122	5	89	3.99e-18	73.9
MsG0780037963.01.T01	MTR_4g072300	44.706	85	42	3	38	120	7	88	6.69e-18	73.2
MsG0780037963.01.T01	MTR_4g072530	40.909	88	47	3	37	122	5	89	1.05e-17	72.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037963.01.T01	AT2G45210	48.148	135	63	3	1	128	17	151	5.13e-39	129
MsG0780037963.01.T01	AT3G60690	45.946	111	52	2	24	126	48	158	1.15e-31	110
MsG0780037963.01.T01	AT4G22620	46.226	106	52	2	20	124	46	147	1.27e-25	95.1
MsG0780037963.01.T01	AT4G12410	42.105	114	57	2	20	124	31	144	2.17e-25	94.4
MsG0780037963.01.T01	AT2G46690	45.882	85	46	0	47	131	15	99	6.67e-22	84.3
MsG0780037963.01.T01	AT3G61900	54.412	68	31	0	55	122	29	96	4.02e-21	82.8
MsG0780037963.01.T01	AT4G00880	55.224	67	29	1	56	122	28	93	8.57e-20	79.0
MsG0780037963.01.T01	AT5G53590	45.714	70	36	1	55	122	45	114	1.05e-17	74.3
MsG0780037963.01.T01	AT4G34800	55.738	61	26	1	56	115	21	81	1.90e-17	72.4
MsG0780037963.01.T01	AT4G34810	48.148	81	40	2	33	111	25	105	4.95e-17	72.0

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Find 39 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGTTGAAGAGGAGTA+TGG	0.344907	7:+37145733	MsG0780037963.01.T01:CDS
AATAAGACGCGGATTCGAAC+TGG	0.406236	7:+37145466	MsG0780037963.01.T01:CDS
AGAAAGAGGAAGAGATAAAT+AGG	0.176068	7:+37145659	MsG0780037963.01.T01:CDS
AGTTTGAACGGATCAAGACC+TGG	0.576336	7:+37145800	MsG0780037963.01.T01:CDS
ATCAAGACCTGGATTGCATC+AGG	0.485980	7:+37145811	MsG0780037963.01.T01:CDS
ATGGGGCCGCAAGCTAACGA+CGG	0.684381	7:+37145540	MsG0780037963.01.T01:CDS
ATTGCTTAAAGATGTTGAAG+AGG	0.557241	7:+37145726	MsG0780037963.01.T01:CDS
CAGCGTGCCGAAGGGACAAA+TGG	0.509825	7:+37145621	MsG0780037963.01.T01:CDS
CATTTGAGAAGTTTCATTGC+CGG	0.377274	7:-37145520	None:intergenic
CCCGAAATTCAGCGTGCCGA+AGG	0.490065	7:+37145612	MsG0780037963.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAAGAGGAAGAGATAAAT+AGG	+	Chr7:37145659-37145678	MsG0780037963.01.T01:CDS	30.0%
ATTGCTTAAAGATGTTGAAG+AGG	+	Chr7:37145726-37145745	MsG0780037963.01.T01:CDS	30.0%
GAAAGAGGAAGAGATAAATA+GGG	+	Chr7:37145660-37145679	MsG0780037963.01.T01:CDS	30.0%
AAAGATGTTGAAGAGGAGTA+TGG	+	Chr7:37145733-37145752	MsG0780037963.01.T01:CDS	35.0%
CATTTGAGAAGTTTCATTGC+CGG	-	Chr7:37145523-37145542	None:intergenic	35.0%
GCAATGAAACTTCTCAAATG+GGG	+	Chr7:37145523-37145542	MsG0780037963.01.T01:CDS	35.0%
GGAAGAGATAAATAGGGTTA+TGG	+	Chr7:37145666-37145685	MsG0780037963.01.T01:CDS	35.0%
GGCAATGAAACTTCTCAAAT+GGG	+	Chr7:37145522-37145541	MsG0780037963.01.T01:CDS	35.0%
TACGATACCATGTAGGTTTA+CGG	+	Chr7:37145777-37145796	MsG0780037963.01.T01:CDS	35.0%
CGGCAATGAAACTTCTCAAA+TGG	+	Chr7:37145521-37145540	MsG0780037963.01.T01:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	37145460	37145855	37145460	ID=MsG0780037963.01;Name=MsG0780037963.01
Chr7	mRNA	37145460	37145855	37145460	ID=MsG0780037963.01.T01;Parent=MsG0780037963.01;Name=MsG0780037963.01.T01;_AED=0.43;_eAED=0.43;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|131
Chr7	exon	37145460	37145855	37145460	ID=MsG0780037963.01.T01:exon:5759;Parent=MsG0780037963.01.T01
Chr7	CDS	37145460	37145855	37145460	ID=MsG0780037963.01.T01:cds;Parent=MsG0780037963.01.T01

Gene Sequence

>MsG0780037963.01.T01

ATGTTTAATAAGACGCGGATTCGAACTGGATATCATCGCTTTGATTGTCATGCTCAATCTCCGGCAATGAAACTTCTCAAATGGGGCCGCAAGCTAACGACGGATGCCATGAAGCTTTTCAACAGGTCGAGTTATACTCGGTTAGAATCCAGCCCGAAATTCAGCGTGCCGAAGGGACAAATGGTTGTGTATGTGGGACAGAAAGAGGAAGAGATAAATAGGGTTATGGTGCCAGTGATATACTTTAACCACCCATTGTTTAGTGAATTGCTTAAAGATGTTGAAGAGGAGTATGGTTTTAACCATCAAGGTGGGATTACGATACCATGTAGGTTTACGGAGTTTGAACGGATCAAGACCTGGATTGCATCAGGTTCCAGCAATTGGACCAGTTGA

Protein sequence

>MsG0780037963.01.T01

MFNKTRIRTGYHRFDCHAQSPAMKLLKWGRKLTTDAMKLFNRSSYTRLESSPKFSVPKGQMVVYVGQKEEEINRVMVPVIYFNHPLFSELLKDVEEEYGFNHQGGITIPCRFTEFERIKTWIASGSSNWTS*