AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004937.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004937.01.T01 MTR_1g089980 97.183 71 2 0 107 177 265 335 1.10e-40 143
MsG0180004937.01.T01 MTR_1g089980 75.949 79 15 3 1 77 1 77 7.65e-31 117
MsG0180004937.01.T01 MTR_7g094470 60.000 105 39 2 102 204 265 368 7.39e-28 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004937.01.T01 AT4G02920 60.000 75 29 1 105 178 264 338 7.00e-20 87.0
MsG0180004937.01.T01 AT4G02920 60.000 75 29 1 105 178 265 339 7.04e-20 87.0
MsG0180004937.01.T01 AT1G03340 54.286 70 32 0 109 178 243 312 1.67e-16 77.0

Find 82 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGCTTATTTGGCTTTCT+TGG 0.149191 1:-84679220 MsG0180004937.01.T01:CDS
CCACTAAAGGAGGGGAATTT+TGG 0.166638 1:-84681987 MsG0180004937.01.T01:five_prime_UTR
CAAGGTGTGTAGGCAATTTA+TGG 0.225851 1:-84681591 MsG0180004937.01.T01:CDS
TTCAACACAGGGTTGGGTTT+TGG 0.226421 1:-84679238 MsG0180004937.01.T01:CDS
TTGGCTTATTTGGCTTTCTT+GGG 0.250088 1:-84679219 MsG0180004937.01.T01:CDS
CCAAAATTCCCCTCCTTTAG+TGG 0.277551 1:+84681987 None:intergenic
GATATCAGAGTCCAAATCTT+AGG 0.281870 1:-84681720 MsG0180004937.01.T01:CDS
GATGAATTTAACCTAAGATT+TGG 0.287708 1:+84681709 None:intergenic
TGAGAGCCTTCTGTTCTTGA+TGG 0.290630 1:-84679436 MsG0180004937.01.T01:CDS
TGGTATGATTATTACCTATT+AGG 0.291086 1:-84678874 MsG0180004937.01.T01:three_prime_UTR
GATTCAGAAACTTACTTTGA+TGG 0.292699 1:-84681916 MsG0180004937.01.T01:CDS
CAATTCTCTGCTGGCATTGC+TGG 0.299676 1:-84679336 MsG0180004937.01.T01:CDS
GACAATTAAAACTACCTAAT+AGG 0.315326 1:+84678860 None:intergenic
GGTTTCCCCTTTCTTCATAA+AGG 0.340088 1:-84678728 MsG0180004937.01.T01:three_prime_UTR
CTCTGATATCTAATAATATC+TGG 0.353756 1:+84681733 None:intergenic
GGATTGGCTTTGACTTTCTT+CGG 0.356219 1:+84679527 None:intergenic
TTCACCTAAGCTTTGACATT+TGG 0.358783 1:-84678911 MsG0180004937.01.T01:three_prime_UTR
TATCTAATAATATCTGGTTT+TGG 0.360696 1:+84681739 None:intergenic
GTTCTTTCACTGAAGAAATC+AGG 0.382585 1:-84679384 MsG0180004937.01.T01:CDS
TCTGCTGGCATTGCTGGTAC+TGG 0.385638 1:-84679330 MsG0180004937.01.T01:CDS
AAGATAAATTGTAAAGTCTA+AGG 0.387834 1:-84678799 MsG0180004937.01.T01:three_prime_UTR
AAGGTCTTCAACACAGGGTT+GGG 0.391495 1:-84679244 MsG0180004937.01.T01:CDS
ATGATAGGGTTGTCAACAAT+TGG 0.402315 1:-84681776 MsG0180004937.01.T01:intron
TATGTAACCTTTATGAAGAA+AGG 0.413592 1:+84678721 None:intergenic
ATTTGGCTTGATCATCACTA+TGG 0.414828 1:-84678894 MsG0180004937.01.T01:three_prime_UTR
AACCGTTGTAGCTGATTTGT+TGG 0.436226 1:-84678987 MsG0180004937.01.T01:three_prime_UTR
AAGCAAGAATGCTGGAAAGA+TGG 0.436409 1:-84679163 MsG0180004937.01.T01:three_prime_UTR
AGCAAGAATGCTGGAAAGAT+GGG 0.449740 1:-84679162 MsG0180004937.01.T01:three_prime_UTR
TGTTCTTGATGGCTGATAAG+AGG 0.453397 1:-84679425 MsG0180004937.01.T01:CDS
AAATGCTTACATTACTTGCT+TGG 0.454470 1:+84678838 None:intergenic
GAGAATTGTGTAAGGAGCTC+GGG 0.454630 1:+84679351 None:intergenic
ATGTAACCTTTATGAAGAAA+GGG 0.457583 1:+84678722 None:intergenic
CTATCACTTCAGCAGCCATC+AGG 0.462770 1:+84678956 None:intergenic
AAGAATGCACATCAAAAGAG+TGG 0.475274 1:-84681677 MsG0180004937.01.T01:CDS
CTTACTTTGATGGCTTCTCA+TGG 0.481501 1:-84681906 MsG0180004937.01.T01:CDS
GCGTCTAAGGTCTTCAACAC+AGG 0.481894 1:-84679250 MsG0180004937.01.T01:CDS
GGCTGATAAGAGGCATCGTC+GGG 0.482476 1:-84679415 MsG0180004937.01.T01:CDS
TTCACTGAAGAAATCAGGTC+CGG 0.487415 1:-84679379 MsG0180004937.01.T01:CDS
CAAGCCAAATGTCAAAGCTT+AGG 0.491076 1:+84678907 None:intergenic
AAGACCTTAGACGCACCAAA+AGG 0.495745 1:+84679259 None:intergenic
AAGCATTTGCTTGGCTTTAG+CGG 0.496226 1:-84678823 MsG0180004937.01.T01:three_prime_UTR
TGCTAGTAGTGGCAGTGCTA+AGG 0.499557 1:-84679068 MsG0180004937.01.T01:three_prime_UTR
CTCCTTACACAATTCTCTGC+TGG 0.505017 1:-84679345 MsG0180004937.01.T01:CDS
AGACCTTAGACGCACCAAAA+GGG 0.507587 1:+84679260 None:intergenic
TTGTTGGATGTTCAGCCTGA+TGG 0.508069 1:-84678971 MsG0180004937.01.T01:three_prime_UTR
GTAAGGAGCTCGGGAAGCTC+CGG 0.511742 1:+84679360 None:intergenic
TTCATGGCATATTCTTGAGA+TGG 0.519316 1:+84681879 None:intergenic
TGGCTTATTTGGCTTTCTTG+GGG 0.520133 1:-84679218 MsG0180004937.01.T01:CDS
AAGTAATGTAAGCATTTGCT+TGG 0.525023 1:-84678832 MsG0180004937.01.T01:three_prime_UTR
TAAGGTCTTCAACACAGGGT+TGG 0.534621 1:-84679245 MsG0180004937.01.T01:CDS
TTATGAAGAAAGGGGAAACC+TGG 0.535086 1:+84678731 None:intergenic
AGAGAATTGTGTAAGGAGCT+CGG 0.542826 1:+84679350 None:intergenic
AAAAGAAAGTAGCCAGGGAG+AGG 0.544026 1:-84679491 MsG0180004937.01.T01:CDS
ATCTCAAGAATATGCCATGA+AGG 0.545054 1:-84681877 MsG0180004937.01.T01:intron
CTTGAACAGATCCCTCTCCC+TGG 0.545602 1:+84679479 None:intergenic
GACCTTAGACGCACCAAAAG+GGG 0.545881 1:+84679261 None:intergenic
AGCTGCAGCGTTGCTAGTAG+TGG 0.549465 1:-84679079 MsG0180004937.01.T01:three_prime_UTR
GTTAACATAAGCAAGAATGC+TGG 0.550226 1:-84679171 MsG0180004937.01.T01:three_prime_UTR
TGGCTGCTGAAGTGATAGCC+AGG 0.563013 1:-84678951 MsG0180004937.01.T01:three_prime_UTR
TTGATAGAACCACTAAAGGA+GGG 0.571673 1:-84681996 MsG0180004937.01.T01:five_prime_UTR
ATCTGCAAACTAGCTGCGGA+GGG 0.577877 1:-84679285 MsG0180004937.01.T01:CDS
TGCCAGCAGAGAATTGTGTA+AGG 0.578242 1:+84679343 None:intergenic
TTTGATAGAACCACTAAAGG+AGG 0.579696 1:-84681997 MsG0180004937.01.T01:five_prime_UTR
TGGCTGATAAGAGGCATCGT+CGG 0.580551 1:-84679416 MsG0180004937.01.T01:CDS
AGGTACAGTTGTTTGAAACC+TGG 0.581907 1:+84678933 None:intergenic
TATCAGCCATCAAGAACAGA+AGG 0.589403 1:+84679430 None:intergenic
AAAGAAAGTAGCCAGGGAGA+GGG 0.598067 1:-84679490 MsG0180004937.01.T01:CDS
TGATAGAACCACTAAAGGAG+GGG 0.598709 1:-84681995 MsG0180004937.01.T01:five_prime_UTR
CTTGGGGAGTAAATAGCTGA+GGG 0.599439 1:-84679202 MsG0180004937.01.T01:exon
AGAATGCACATCAAAAGAGT+GGG 0.607785 1:-84681676 MsG0180004937.01.T01:CDS
TCTTGGGGAGTAAATAGCTG+AGG 0.607931 1:-84679203 MsG0180004937.01.T01:exon
GGTTTAGTGAAAATGTTACC+AGG 0.609638 1:-84678749 MsG0180004937.01.T01:three_prime_UTR
CGTCTAAGGTCTTCAACACA+GGG 0.621563 1:-84679249 MsG0180004937.01.T01:CDS
TGTAACCTTTATGAAGAAAG+GGG 0.622798 1:+84678723 None:intergenic
AAAGATGGGATTGAAAGATG+AGG 0.631344 1:-84679148 MsG0180004937.01.T01:three_prime_UTR
GATCTGCAAACTAGCTGCGG+AGG 0.634112 1:-84679286 MsG0180004937.01.T01:CDS
ATCCAACAAATCAGCTACAA+CGG 0.635330 1:+84678985 None:intergenic
AAATGTCAAAGCTTAGGTGA+AGG 0.636141 1:+84678913 None:intergenic
TGTGATCTGCAAACTAGCTG+CGG 0.636346 1:-84679289 MsG0180004937.01.T01:CDS
GTTGCAATGAATGAACTGAC+TGG 0.649728 1:-84678770 MsG0180004937.01.T01:three_prime_UTR
ACCTTAGACGCACCAAAAGG+GGG 0.652905 1:+84679262 None:intergenic
TCACAGATAGCACGACAGCA+AGG 0.673650 1:+84679307 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTATATTTATAATTAAATC+CGG + Chr1:84679989-84680008 None:intergenic 10.0%
!!! ATTGAATTTTTTTTTATGAT+AGG - Chr1:84678916-84678935 MsG0180004937.01.T01:three_prime_UTR 10.0%
!!! TTGAATTTTTTTTTATGATA+GGG - Chr1:84678917-84678936 MsG0180004937.01.T01:three_prime_UTR 10.0%
!! AAAATGCATAAAATTAAAGT+CGG + Chr1:84680937-84680956 None:intergenic 15.0%
!! ATAATAGAAAACAATATTCA+GGG - Chr1:84679922-84679941 MsG0180004937.01.T01:intron 15.0%
!!! ATATTTTGATTATACAATGT+TGG - Chr1:84679155-84679174 MsG0180004937.01.T01:three_prime_UTR 15.0%
!! AAATGCATAAAATTAAAGTC+GGG + Chr1:84680936-84680955 None:intergenic 20.0%
!! AAGATAAATTGTAAAGTCTA+AGG - Chr1:84681908-84681927 MsG0180004937.01.T01:CDS 20.0%
!! ATGTGATCAATGAATTTAAA+CGG + Chr1:84679874-84679893 None:intergenic 20.0%
!! ATTTATCGAATTATCTAACT+AGG - Chr1:84680409-84680428 MsG0180004937.01.T01:intron 20.0%
!! CAAATTAATGTTCATCTAAA+TGG - Chr1:84679707-84679726 MsG0180004937.01.T01:intron 20.0%
!! CAAGAATAGAATATTGAATA+TGG + Chr1:84680616-84680635 None:intergenic 20.0%
!! CATAATAGAAAACAATATTC+AGG - Chr1:84679921-84679940 MsG0180004937.01.T01:intron 20.0%
!! CTCATAAAAAATATACAACA+TGG + Chr1:84679245-84679264 None:intergenic 20.0%
!! GTTAAAGTAGTAAAAATCAA+TGG - Chr1:84680483-84680502 MsG0180004937.01.T01:intron 20.0%
!!! ACACATTTTAAAATGCATTT+TGG + Chr1:84680030-84680049 None:intergenic 20.0%
!!! ATAACATCAATTTAAAACCT+TGG - Chr1:84680004-84680023 MsG0180004937.01.T01:intron 20.0%
!!! ATATTCTACCTACTTTTTAA+AGG + Chr1:84680757-84680776 None:intergenic 20.0%
!!! GGAATCAAGTTTTTATTTTT+GGG - Chr1:84681026-84681045 MsG0180004937.01.T01:intron 20.0%
!!! TAAATTTGTCGTACATATTT+TGG - Chr1:84680201-84680220 MsG0180004937.01.T01:intron 20.0%
!!! TACTAATAATTTTACCTTCA+TGG + Chr1:84678847-84678866 None:intergenic 20.0%
!!! TATCTAATAATATCTGGTTT+TGG + Chr1:84678971-84678990 None:intergenic 20.0%
! AGATGTAGAAATTCCTATTT+GGG + Chr1:84679645-84679664 None:intergenic 25.0%
! ATAGCTGTAAATTTGATCAT+TGG - Chr1:84680312-84680331 MsG0180004937.01.T01:intron 25.0%
! ATGTAACCTTTATGAAGAAA+GGG + Chr1:84681988-84682007 None:intergenic 25.0%
! CTCTGATATCTAATAATATC+TGG + Chr1:84678977-84678996 None:intergenic 25.0%
! GAATATTACTATATCAGTCA+TGG - Chr1:84679295-84679314 MsG0180004937.01.T01:CDS 25.0%
! GACAATTAAAACTACCTAAT+AGG + Chr1:84681850-84681869 None:intergenic 25.0%
! GATGAATTTAACCTAAGATT+TGG + Chr1:84679001-84679020 None:intergenic 25.0%
! TAGTAAATGCTTGAATTGAA+AGG - Chr1:84679209-84679228 MsG0180004937.01.T01:CDS 25.0%
! TATGTAACCTTTATGAAGAA+AGG + Chr1:84681989-84682008 None:intergenic 25.0%
! TCTTGAAAAAAATCAAGCAA+AGG + Chr1:84679673-84679692 None:intergenic 25.0%
! TGGTATGATTATTACCTATT+AGG - Chr1:84681833-84681852 MsG0180004937.01.T01:intron 25.0%
! TTCAAGCATTTACTAATACA+TGG + Chr1:84679204-84679223 None:intergenic 25.0%
! TTTCTCTTAAAATTTGAGCT+AGG + Chr1:84680991-84681010 None:intergenic 25.0%
!! AAGTAATGTAACTTACCTTT+TGG - Chr1:84679416-84679435 MsG0180004937.01.T01:CDS 25.0%
!! AATATGTTTTCCATGACAAT+TGG - Chr1:84680772-84680791 MsG0180004937.01.T01:intron 25.0%
!! ATGAACATTAATTTGAGCTA+AGG + Chr1:84679702-84679721 None:intergenic 25.0%
!! TGAACATTAATTTGAGCTAA+GGG + Chr1:84679701-84679720 None:intergenic 25.0%
!!! GGGAATCAAGTTTTTATTTT+TGG - Chr1:84681025-84681044 MsG0180004937.01.T01:intron 25.0%
!!! TTTCTTTTTCTTTTTCGTGA+TGG + Chr1:84681204-84681223 None:intergenic 25.0%
!!! TTTTTTGAGAGAGAGAATTT+TGG + Chr1:84678754-84678773 None:intergenic 25.0%
AAAAGAAAAAGAAAGTAGCC+AGG - Chr1:84681210-84681229 MsG0180004937.01.T01:intron 30.0%
AAAGAAAAAGAAAGTAGCCA+GGG - Chr1:84681211-84681230 MsG0180004937.01.T01:intron 30.0%
AAATGCTTACATTACTTGCT+TGG + Chr1:84681872-84681891 None:intergenic 30.0%
AAGTAATGTAAGCATTTGCT+TGG - Chr1:84681875-84681894 MsG0180004937.01.T01:intron 30.0%
AGAGAAATAATCATCAGATG+AGG - Chr1:84681004-84681023 MsG0180004937.01.T01:intron 30.0%
CTGTAAAACAAATGGATCAT+TGG - Chr1:84680872-84680891 MsG0180004937.01.T01:intron 30.0%
GAGAAATAATCATCAGATGA+GGG - Chr1:84681005-84681024 MsG0180004937.01.T01:intron 30.0%
GAGATGTAGAAATTCCTATT+TGG + Chr1:84679646-84679665 None:intergenic 30.0%
GATTCAGAAACTTACTTTGA+TGG - Chr1:84678791-84678810 MsG0180004937.01.T01:three_prime_UTR 30.0%
GCTGAATATAAATGAAGTAG+AGG - Chr1:84680684-84680703 MsG0180004937.01.T01:intron 30.0%
TAGGCAACAATACAAAAATC+AGG - Chr1:84680428-84680447 MsG0180004937.01.T01:intron 30.0%
TCTATCCTCTGTAAAACAAA+TGG - Chr1:84680864-84680883 MsG0180004937.01.T01:intron 30.0%
TGAGGAAATGATTCAAAAAG+TGG - Chr1:84681577-84681596 MsG0180004937.01.T01:intron 30.0%
TGTAACCTTTATGAAGAAAG+GGG + Chr1:84681987-84682006 None:intergenic 30.0%
TTTGTTTCCTTCATATGATG+TGG - Chr1:84680954-84680973 MsG0180004937.01.T01:intron 30.0%
! ACTTTTGCTGAAAATCTACA+TGG - Chr1:84680657-84680676 MsG0180004937.01.T01:intron 30.0%
! ATGTTAAAGCTTTATCATGC+AGG + Chr1:84680092-84680111 None:intergenic 30.0%
! GACTTATGTTGCTAATCTTT+TGG - Chr1:84679351-84679370 MsG0180004937.01.T01:CDS 30.0%
!! GAGAGCTTTTACTCTAAAAA+TGG - Chr1:84680898-84680917 MsG0180004937.01.T01:intron 30.0%
!! TTTAAAATGCATTTTGGCCA+AGG + Chr1:84680024-84680043 None:intergenic 30.0%
!!! ATGATCCATTTGTTTTACAG+AGG + Chr1:84680872-84680891 None:intergenic 30.0%
!!! CTACCTACTTTTTAAAGGAA+CGG + Chr1:84680752-84680771 None:intergenic 30.0%
!!! TGTTTTGATAGAACCACTAA+AGG - Chr1:84678707-84678726 MsG0180004937.01.T01:three_prime_UTR 30.0%
!!! TTTTCTTTTTCGTGATGGAT+TGG + Chr1:84681199-84681218 None:intergenic 30.0%
AAAACAGAGTCACATGCATA+TGG + Chr1:84680366-84680385 None:intergenic 35.0%
AAACAGAGTCACATGCATAT+GGG + Chr1:84680365-84680384 None:intergenic 35.0%
AAAGATGGGATTGAAAGATG+AGG - Chr1:84681559-84681578 MsG0180004937.01.T01:intron 35.0%
AAATGTCAAAGCTTAGGTGA+AGG + Chr1:84681797-84681816 None:intergenic 35.0%
AACAATATTCAGGGACTTCT+TGG - Chr1:84679931-84679950 MsG0180004937.01.T01:intron 35.0%
AAGAATGCACATCAAAAGAG+TGG - Chr1:84679030-84679049 MsG0180004937.01.T01:three_prime_UTR 35.0%
ACTCAATCCACATCATATGA+AGG + Chr1:84680964-84680983 None:intergenic 35.0%
AGAATGCACATCAAAAGAGT+GGG - Chr1:84679031-84679050 MsG0180004937.01.T01:three_prime_UTR 35.0%
AGACAATCTCTACATATCAC+CGG + Chr1:84679323-84679342 None:intergenic 35.0%
ATCCAACAAATCAGCTACAA+CGG + Chr1:84681725-84681744 None:intergenic 35.0%
ATCTCAAGAATATGCCATGA+AGG - Chr1:84678830-84678849 MsG0180004937.01.T01:three_prime_UTR 35.0%
ATGATAGGGTTGTCAACAAT+TGG - Chr1:84678931-84678950 MsG0180004937.01.T01:three_prime_UTR 35.0%
ATTCTCTCATCTACCCAAAT+AGG - Chr1:84679629-84679648 MsG0180004937.01.T01:intron 35.0%
CAAATACTGTGATCACTGTA+TGG + Chr1:84681116-84681135 None:intergenic 35.0%
CACATGAAATCCTTCTGTTT+GGG - Chr1:84679889-84679908 MsG0180004937.01.T01:intron 35.0%
CATACGCAATATGCTGTTAT+AGG - Chr1:84680811-84680830 MsG0180004937.01.T01:intron 35.0%
CATATTGCGTATGTCAATTC+AGG + Chr1:84680804-84680823 None:intergenic 35.0%
GAGAGAATGCAATGATATTG+AGG + Chr1:84679617-84679636 None:intergenic 35.0%
GATATCAGAGTCCAAATCTT+AGG - Chr1:84678987-84679006 MsG0180004937.01.T01:three_prime_UTR 35.0%
GGTTTAGTGAAAATGTTACC+AGG - Chr1:84681958-84681977 MsG0180004937.01.T01:five_prime_UTR 35.0%
GTCAATCTATTGATCAACAC+CGG - Chr1:84679967-84679986 MsG0180004937.01.T01:intron 35.0%
GTTAACATAAGCAAGAATGC+TGG - Chr1:84681536-84681555 MsG0180004937.01.T01:intron 35.0%
GTTCTTTCACTGAAGAAATC+AGG - Chr1:84681323-84681342 MsG0180004937.01.T01:intron 35.0%
TCACATGAAATCCTTCTGTT+TGG - Chr1:84679888-84679907 MsG0180004937.01.T01:intron 35.0%
TCACTAGGTATGTACATATG+TGG - Chr1:84679846-84679865 MsG0180004937.01.T01:intron 35.0%
TGTACATACCTAGTGAAGTA+TGG + Chr1:84679842-84679861 None:intergenic 35.0%
TGTAGAGTGAATATCCAATG+CGG + Chr1:84680725-84680744 None:intergenic 35.0%
TTCATGGCATATTCTTGAGA+TGG + Chr1:84678831-84678850 None:intergenic 35.0%
TTGATAGAACCACTAAAGGA+GGG - Chr1:84678711-84678730 MsG0180004937.01.T01:three_prime_UTR 35.0%
TTTGATAGAACCACTAAAGG+AGG - Chr1:84678710-84678729 MsG0180004937.01.T01:three_prime_UTR 35.0%
! CATATGATGTGGATTGAGTT+AGG - Chr1:84680965-84680984 MsG0180004937.01.T01:intron 35.0%
! TGACCGTTCCTTTAAAAAGT+AGG - Chr1:84680746-84680765 MsG0180004937.01.T01:intron 35.0%
! TTCACCTAAGCTTTGACATT+TGG - Chr1:84681796-84681815 MsG0180004937.01.T01:intron 35.0%
! TTTTTGATGTCAAGGTGTGT+AGG - Chr1:84679106-84679125 MsG0180004937.01.T01:three_prime_UTR 35.0%
!! ATTTGGCTTGATCATCACTA+TGG - Chr1:84681813-84681832 MsG0180004937.01.T01:intron 35.0%
!! CTGCAAAGTTTTATCATGCT+CGG + Chr1:84679499-84679518 None:intergenic 35.0%
!! TTGGCTTATTTGGCTTTCTT+GGG - Chr1:84681488-84681507 MsG0180004937.01.T01:intron 35.0%
!! TTTGGCTTATTTGGCTTTCT+TGG - Chr1:84681487-84681506 MsG0180004937.01.T01:intron 35.0%
AAATGGTCCAGTCACGTTTA+TGG - Chr1:84679724-84679743 MsG0180004937.01.T01:intron 40.0%
AAGCAAGAATGCTGGAAAGA+TGG - Chr1:84681544-84681563 MsG0180004937.01.T01:intron 40.0%
AGAGAATTGTGTAAGGAGCT+CGG + Chr1:84681360-84681379 None:intergenic 40.0%
AGCAAGAATGCTGGAAAGAT+GGG - Chr1:84681545-84681564 MsG0180004937.01.T01:intron 40.0%
AGTGTATTGTCTGATACTGG+AGG - Chr1:84680058-84680077 MsG0180004937.01.T01:intron 40.0%
ATTGCGTATGTCAATTCAGG+AGG + Chr1:84680801-84680820 None:intergenic 40.0%
CAAGCCAAATGTCAAAGCTT+AGG + Chr1:84681803-84681822 None:intergenic 40.0%
CAAGGTGTGTAGGCAATTTA+TGG - Chr1:84679116-84679135 MsG0180004937.01.T01:three_prime_UTR 40.0%
CACCTTGACATCAAAAACCT+TGG + Chr1:84679103-84679122 None:intergenic 40.0%
GACAAAGTAACCCAAACAGA+AGG + Chr1:84679902-84679921 None:intergenic 40.0%
GCACATGAGACTATCAACAA+TGG + Chr1:84681091-84681110 None:intergenic 40.0%
GCGTAACTTCAAAGGTTTGT+CGG + Chr1:84680553-84680572 None:intergenic 40.0%
GGTTTCCCCTTTCTTCATAA+AGG - Chr1:84681979-84681998 MsG0180004937.01.T01:five_prime_UTR 40.0%
GTAGAGTGAATATCCAATGC+GGG + Chr1:84680724-84680743 None:intergenic 40.0%
GTTGCAATGAATGAACTGAC+TGG - Chr1:84681937-84681956 MsG0180004937.01.T01:exon 40.0%
GTTTGTCGGAAACTTAGTTC+AGG + Chr1:84680539-84680558 None:intergenic 40.0%
TACTATATCAGTCATGGTGC+CGG - Chr1:84679301-84679320 MsG0180004937.01.T01:CDS 40.0%
TAGAGTGAATATCCAATGCG+GGG + Chr1:84680723-84680742 None:intergenic 40.0%
TATCAGCCATCAAGAACAGA+AGG + Chr1:84681280-84681299 None:intergenic 40.0%
TCGAGTGTATTGTCTGATAC+TGG - Chr1:84680055-84680074 MsG0180004937.01.T01:intron 40.0%
TGATAGAACCACTAAAGGAG+GGG - Chr1:84678712-84678731 MsG0180004937.01.T01:three_prime_UTR 40.0%
TGCTGAAAATCTACATGGAC+AGG - Chr1:84680662-84680681 MsG0180004937.01.T01:intron 40.0%
TGCTTGTTCCATACTTCACT+AGG - Chr1:84679831-84679850 MsG0180004937.01.T01:intron 40.0%
TTATGAAGAAAGGGGAAACC+TGG + Chr1:84681979-84681998 None:intergenic 40.0%
TTCACTGAAGAAATCAGGTC+CGG - Chr1:84681328-84681347 MsG0180004937.01.T01:intron 40.0%
TTCAGTACCATAAACGTGAC+TGG + Chr1:84679734-84679753 None:intergenic 40.0%
! AAGCTGAAAAGTACAGTGCT+TGG + Chr1:84679456-84679475 None:intergenic 40.0%
! AGCACTGTACTTTTCAGCTT+TGG - Chr1:84679456-84679475 MsG0180004937.01.T01:CDS 40.0%
! AGCCAAGGTTTTTGATGTCA+AGG - Chr1:84679098-84679117 MsG0180004937.01.T01:three_prime_UTR 40.0%
! AGGTACAGTTGTTTGAAACC+TGG + Chr1:84681777-84681796 None:intergenic 40.0%
! CTTACTTTGATGGCTTCTCA+TGG - Chr1:84678801-84678820 MsG0180004937.01.T01:three_prime_UTR 40.0%
! GCTTTGTTGTCTGACTTGAT+GGG - Chr1:84679566-84679585 MsG0180004937.01.T01:intron 40.0%
! TGTTCTTGATGGCTGATAAG+AGG - Chr1:84681282-84681301 MsG0180004937.01.T01:intron 40.0%
!! AAAAACCTTGGCTTTAGAGC+TGG + Chr1:84679091-84679110 None:intergenic 40.0%
!! AACCGTTGTAGCTGATTTGT+TGG - Chr1:84681720-84681739 MsG0180004937.01.T01:CDS 40.0%
!! AAGCATTTGCTTGGCTTTAG+CGG - Chr1:84681884-84681903 MsG0180004937.01.T01:CDS 40.0%
!! AGCTTTGTTGTCTGACTTGA+TGG - Chr1:84679565-84679584 MsG0180004937.01.T01:intron 40.0%
!! GGATTGGCTTTGACTTTCTT+CGG + Chr1:84681183-84681202 None:intergenic 40.0%
!! TGATGGGTTTGCAACTATCA+GGG - Chr1:84679582-84679601 MsG0180004937.01.T01:intron 40.0%
!! TGGCTTATTTGGCTTTCTTG+GGG - Chr1:84681489-84681508 MsG0180004937.01.T01:intron 40.0%
!! TTGATGGGTTTGCAACTATC+AGG - Chr1:84679581-84679600 MsG0180004937.01.T01:intron 40.0%
!!! ATTTTCCAGCTCTAAAGCCA+AGG - Chr1:84679083-84679102 MsG0180004937.01.T01:three_prime_UTR 40.0%
!!! TCTGGTTTTGGTGCATAACA+AGG + Chr1:84678959-84678978 None:intergenic 40.0%
AAAAGAAAGTAGCCAGGGAG+AGG - Chr1:84681216-84681235 MsG0180004937.01.T01:intron 45.0%
AAAGAAAGTAGCCAGGGAGA+GGG - Chr1:84681217-84681236 MsG0180004937.01.T01:intron 45.0%
AAGACCTTAGACGCACCAAA+AGG + Chr1:84681451-84681470 None:intergenic 45.0%
AAGGTCTTCAACACAGGGTT+GGG - Chr1:84681463-84681482 MsG0180004937.01.T01:intron 45.0%
AGACCTTAGACGCACCAAAA+GGG + Chr1:84681450-84681469 None:intergenic 45.0%
AGAGTGAATATCCAATGCGG+GGG + Chr1:84680722-84680741 None:intergenic 45.0%
AGTCACATGCATATGGGATC+AGG + Chr1:84680359-84680378 None:intergenic 45.0%
CATGTTACTCTTGTCTTGCC+AGG - Chr1:84680246-84680265 MsG0180004937.01.T01:intron 45.0%
CCAAAATTCCCCTCCTTTAG+TGG + Chr1:84678723-84678742 None:intergenic 45.0%
CGTATCAAACGCACACATAC+AGG - Chr1:84679794-84679813 MsG0180004937.01.T01:intron 45.0%
CTCCTTACACAATTCTCTGC+TGG - Chr1:84681362-84681381 MsG0180004937.01.T01:intron 45.0%
CTTGGGGAGTAAATAGCTGA+GGG - Chr1:84681505-84681524 MsG0180004937.01.T01:intron 45.0%
GACAAGTAGCTGCAACCAAA+AGG + Chr1:84679434-84679453 None:intergenic 45.0%
GAGAATTGTGTAAGGAGCTC+GGG + Chr1:84681359-84681378 None:intergenic 45.0%
GCACGTATGCGTAACTTCAA+AGG + Chr1:84680561-84680580 None:intergenic 45.0%
GGACTCACTATGCAAGAACA+AGG + Chr1:84680513-84680532 None:intergenic 45.0%
TAAGGTCTTCAACACAGGGT+TGG - Chr1:84681462-84681481 MsG0180004937.01.T01:intron 45.0%
TCACTATGCAAGAACAAGGC+AGG + Chr1:84680509-84680528 None:intergenic 45.0%
TCGGAAACTTAGTTCAGGCA+GGG + Chr1:84680534-84680553 None:intergenic 45.0%
TCTTGGGGAGTAAATAGCTG+AGG - Chr1:84681504-84681523 MsG0180004937.01.T01:intron 45.0%
TGAGAGCCTTCTGTTCTTGA+TGG - Chr1:84681271-84681290 MsG0180004937.01.T01:intron 45.0%
TGCCAGCAGAGAATTGTGTA+AGG + Chr1:84681367-84681386 None:intergenic 45.0%
TGTGATCTGCAAACTAGCTG+CGG - Chr1:84681418-84681437 MsG0180004937.01.T01:intron 45.0%
TTGTTGGATGTTCAGCCTGA+TGG - Chr1:84681736-84681755 MsG0180004937.01.T01:CDS 45.0%
! CCACTAAAGGAGGGGAATTT+TGG - Chr1:84678720-84678739 MsG0180004937.01.T01:three_prime_UTR 45.0%
! CGTCTAAGGTCTTCAACACA+GGG - Chr1:84681458-84681477 MsG0180004937.01.T01:intron 45.0%
! TTCAACACAGGGTTGGGTTT+TGG - Chr1:84681469-84681488 MsG0180004937.01.T01:intron 45.0%
!! CAGGAGTGCTGTGTTAGTTT+GGG - Chr1:84680265-84680284 MsG0180004937.01.T01:intron 45.0%
!!! GGGTTGGGTTTTGGCTTATT+TGG - Chr1:84681478-84681497 MsG0180004937.01.T01:intron 45.0%
ACCTTAGACGCACCAAAAGG+GGG + Chr1:84681448-84681467 None:intergenic 50.0%
ATCTGCAAACTAGCTGCGGA+GGG - Chr1:84681422-84681441 MsG0180004937.01.T01:intron 50.0%
CAATTCTCTGCTGGCATTGC+TGG - Chr1:84681371-84681390 MsG0180004937.01.T01:intron 50.0%
CAGGAGGAAGCCAATTGTCA+TGG + Chr1:84680785-84680804 None:intergenic 50.0%
CCAAACTAACACAGCACTCC+TGG + Chr1:84680267-84680286 None:intergenic 50.0%
CTATCACTTCAGCAGCCATC+AGG + Chr1:84681754-84681773 None:intergenic 50.0%
GACCTTAGACGCACCAAAAG+GGG + Chr1:84681449-84681468 None:intergenic 50.0%
GTCGGAAACTTAGTTCAGGC+AGG + Chr1:84680535-84680554 None:intergenic 50.0%
TCACAGATAGCACGACAGCA+AGG + Chr1:84681403-84681422 None:intergenic 50.0%
TGCTAGTAGTGGCAGTGCTA+AGG - Chr1:84681639-84681658 MsG0180004937.01.T01:CDS 50.0%
! GCGTCTAAGGTCTTCAACAC+AGG - Chr1:84681457-84681476 MsG0180004937.01.T01:intron 50.0%
!! CCAGGAGTGCTGTGTTAGTT+TGG - Chr1:84680264-84680283 MsG0180004937.01.T01:intron 50.0%
!! TGGCTGATAAGAGGCATCGT+CGG - Chr1:84681291-84681310 MsG0180004937.01.T01:intron 50.0%
AGCTGCAGCGTTGCTAGTAG+TGG - Chr1:84681628-84681647 MsG0180004937.01.T01:CDS 55.0%
CAATGCGGGGGAAATGCTTC+TGG + Chr1:84680710-84680729 None:intergenic 55.0%
CTTGAACAGATCCCTCTCCC+TGG + Chr1:84681231-84681250 None:intergenic 55.0%
GACTGCTGAGCAGGTGTAGA+TGG - Chr1:84679533-84679552 MsG0180004937.01.T01:intron 55.0%
GATCTGCAAACTAGCTGCGG+AGG - Chr1:84681421-84681440 MsG0180004937.01.T01:intron 55.0%
TCTGCTGGCATTGCTGGTAC+TGG - Chr1:84681377-84681396 MsG0180004937.01.T01:intron 55.0%
TGGCTGCTGAAGTGATAGCC+AGG - Chr1:84681756-84681775 MsG0180004937.01.T01:CDS 55.0%
! CACATCTGAGACTGCTGAGC+AGG - Chr1:84679524-84679543 MsG0180004937.01.T01:CDS 55.0%
!! CAGAAGCATTTCCCCCGCAT+TGG - Chr1:84680708-84680727 MsG0180004937.01.T01:intron 55.0%
!! GGCTGATAAGAGGCATCGTC+GGG - Chr1:84681292-84681311 MsG0180004937.01.T01:intron 55.0%
AGCGCGCGAACAGTGAGCAA+CGG - Chr1:84680166-84680185 MsG0180004937.01.T01:intron 60.0%
GCTCACTGTTCGCGCGCTTA+TGG + Chr1:84680164-84680183 None:intergenic 60.0%
GTAAGGAGCTCGGGAAGCTC+CGG + Chr1:84681350-84681369 None:intergenic 60.0%
!! GCCCCCTTTTGGTGCGTCTA+AGG - Chr1:84681444-84681463 MsG0180004937.01.T01:intron 60.0%
! AGCTGCGGAGGGCCCCCTTT+TGG - Chr1:84681433-84681452 MsG0180004937.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 84678701 84682028 84678701 ID=MsG0180004937.01;Name=MsG0180004937.01
Chr1 mRNA 84678701 84682028 84678701 ID=MsG0180004937.01.T01;Parent=MsG0180004937.01;Name=MsG0180004937.01.T01;_AED=0.49;_eAED=0.50;_QI=85|0.5|0.33|1|0|0.33|3|508|204
Chr1 exon 84678701 84679550 84678701 ID=MsG0180004937.01.T01:exon:9417;Parent=MsG0180004937.01.T01
Chr1 exon 84681585 84681791 84681585 ID=MsG0180004937.01.T01:exon:9416;Parent=MsG0180004937.01.T01
Chr1 exon 84681878 84682028 84681878 ID=MsG0180004937.01.T01:exon:9415;Parent=MsG0180004937.01.T01
Chr1 five_prime_UTR 84681944 84682028 84681944 ID=MsG0180004937.01.T01:five_prime_utr;Parent=MsG0180004937.01.T01
Chr1 CDS 84681878 84681943 84681878 ID=MsG0180004937.01.T01:cds;Parent=MsG0180004937.01.T01
Chr1 CDS 84681585 84681791 84681585 ID=MsG0180004937.01.T01:cds;Parent=MsG0180004937.01.T01
Chr1 CDS 84679209 84679550 84679209 ID=MsG0180004937.01.T01:cds;Parent=MsG0180004937.01.T01
Chr1 three_prime_UTR 84678701 84679208 84678701 ID=MsG0180004937.01.T01:three_prime_utr;Parent=MsG0180004937.01.T01
Gene Sequence

>MsG0180004937.01.T01

ATGATGATTCAGAAACTTACTTTGATGGCTTCTCATGGATTTCCATCTCAAGAATATGCCATGAAGGGTTGTCAACAATTGGTGCCTTGTTATGCACCAAAACCAGATATTATTAGATATCAGAGTCCAAATCTTAGGTTAAATTCATCTGAAGAATCAAGAATGCACATCAAAAGAGTGGGTTCAATTCAAATCTTTGTTGATTTTAGATATTTTCCAGCTCTAAAGCCAAGGTTTTTGATGTCAAGGTGTGTAGGCAATTTATGGAATTGTTCCGAAGAAAGTCAAAGCCAATCCATCACGAAAAAGAAAAAGAAAGTAGCCAGGGAGAGGGATCTGTTCAAGAAGAACTACATTCATGCATGTGAGAGCCTTCTGTTCTTGATGGCTGATAAGAGGCATCGTCGGGAAACAGCAGTTCTTTCACTGAAGAAATCAGGTCCGGAGCTTCCCGAGCTCCTTACACAATTCTCTGCTGGCATTGCTGGTACTGGCCTTGCTGTCGTGCTATCTGTGATCTGCAAACTAGCTGCGGAGGGCCCCCTTTTGGTGCGTCTAAGGTCTTCAACACAGGGTTGGGTTTTGGCTTATTTGGCTTTCTTGGGGAGTAAATAG

Protein sequence

>MsG0180004937.01.T01

MMIQKLTLMASHGFPSQEYAMKGCQQLVPCYAPKPDIIRYQSPNLRLNSSEESRMHIKRVGSIQIFVDFRYFPALKPRFLMSRCVGNLWNCSEESQSQSITKKKKKVARERDLFKKNYIHACESLLFLMADKRHRRETAVLSLKKSGPELPELLTQFSAGIAGTGLAVVLSVICKLAAEGPLLVRLRSSTQGWVLAYLAFLGSK*