AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005356.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005356.01.T01 MTR_1g097935 99.683 315 1 0 1 315 1 315 0.0 657
MsG0180005356.01.T01 MTR_1g097910 99.683 315 1 0 1 315 1 315 0.0 657
MsG0180005356.01.T01 MTR_1g098140 99.683 315 1 0 1 315 1 315 0.0 656
MsG0180005356.01.T01 MTR_7g016800 99.365 315 2 0 1 315 1 315 0.0 654
MsG0180005356.01.T01 MTR_7g016720 99.365 315 2 0 1 315 1 315 0.0 653
MsG0180005356.01.T01 MTR_5g007730 98.730 315 4 0 1 315 1 315 0.0 653
MsG0180005356.01.T01 MTR_7g016820 99.048 315 3 0 1 315 1 315 0.0 651
MsG0180005356.01.T01 MTR_7g016700 98.413 315 5 0 1 315 1 315 0.0 650
MsG0180005356.01.T01 MTR_7g016780 98.730 315 4 0 1 315 1 315 0.0 649
MsG0180005356.01.T01 MTR_5g007760 97.460 315 8 0 1 315 1 315 0.0 644
MsG0180005356.01.T01 MTR_5g007717 97.143 315 9 0 1 315 1 315 0.0 644
MsG0180005356.01.T01 MTR_5g007713 97.143 315 9 0 1 315 1 315 0.0 643
MsG0180005356.01.T01 MTR_3g083920 91.720 314 26 0 1 314 1 314 0.0 619
MsG0180005356.01.T01 MTR_3g083910 91.083 314 28 0 1 314 1 314 0.0 616
MsG0180005356.01.T01 MTR_2g058470 86.984 315 41 0 1 315 1 315 0.0 584
MsG0180005356.01.T01 MTR_3g086260 82.484 314 55 0 1 314 1 314 0.0 561
MsG0180005356.01.T01 MTR_7g084300 80.952 315 60 0 1 315 1 315 0.0 554
MsG0180005356.01.T01 MTR_3g088675 66.139 316 107 0 1 316 1 316 2.79e-167 471
MsG0180005356.01.T01 MTR_7g113405 96.507 229 8 0 87 315 1 229 6.52e-164 458
MsG0180005356.01.T01 MTR_5g007740 81.349 252 47 0 64 315 1 252 1.12e-154 436
MsG0180005356.01.T01 MTR_5g007770 81.707 246 30 1 70 315 1 231 2.05e-145 410
MsG0180005356.01.T01 MTR_5g007723 63.110 328 72 5 7 315 27 324 9.04e-139 398
MsG0180005356.01.T01 MTR_3g088670 46.372 317 156 6 10 315 2 315 5.61e-97 292
MsG0180005356.01.T01 MTR_4g075560 43.871 310 169 3 9 315 11 318 4.35e-82 254
MsG0180005356.01.T01 MTR_4g078730 38.079 302 186 1 15 316 24 324 7.48e-75 235
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005356.01.T01 AT5G13930 82.748 313 53 1 3 314 8 320 0.0 547
MsG0180005356.01.T01 AT4G34850 42.244 303 172 2 15 315 18 319 6.83e-78 243
MsG0180005356.01.T01 AT4G00040 40.461 304 175 4 14 314 16 316 8.85e-73 229
MsG0180005356.01.T01 AT1G02050 39.667 300 177 3 15 312 24 321 3.90e-72 228
MsG0180005356.01.T01 AT4G34850 41.870 246 141 1 72 315 1 246 3.28e-62 200

Find 96 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATAGGTTTCTCAATTTC+TGG 0.101255 1:-90792025 None:intergenic
ACTAACCATCTTGATATATT+TGG 0.209818 1:-90791202 None:intergenic
TGCAGTTCCAATGGCTAAAA+TGG 0.225262 1:-90791268 None:intergenic
CTGATTACAATTCAATCTTT+TGG 0.254027 1:+90792215 MsG0180005356.01.T01:CDS
TACCAACAAGGTTGCTTTGC+AGG 0.283953 1:+90791815 MsG0180005356.01.T01:CDS
CTTTCAAAATCTCCTCTGTT+AGG 0.305425 1:-90791550 None:intergenic
TCAATGGCCCCTTCACTATC+TGG 0.309674 1:-90792079 None:intergenic
CTTGTTGGACAAGCACTATT+TGG 0.314421 1:+90791962 MsG0180005356.01.T01:CDS
AGAGAAGTGCTCAGTGAATA+TGG 0.317887 1:+90792318 MsG0180005356.01.T01:three_prime_UTR
GCTTCGTTTGGCTAAAGATT+TGG 0.342769 1:+90791847 MsG0180005356.01.T01:CDS
GTCTTCGTCCATACGTAAAA+AGG 0.344471 1:+90791783 MsG0180005356.01.T01:CDS
TCTACTTGATCTAGAATTGC+AGG 0.346751 1:-90792256 None:intergenic
TGAATACATGGCACCTTCAT+TGG 0.347646 1:+90791589 MsG0180005356.01.T01:CDS
GGTTTCTCAATTTCTGGTAC+TGG 0.362281 1:-90792019 None:intergenic
TGATATATCAAATAAATAAC+TGG 0.371045 1:-90792650 None:intergenic
AAGTGAGTAATCTTTGACTT+TGG 0.381814 1:-90791695 None:intergenic
AGGAGGCACGGTGCTTCGTT+TGG 0.381968 1:+90791835 MsG0180005356.01.T01:CDS
TACCAACTCACAAAACTCTT+AGG 0.382277 1:+90791761 MsG0180005356.01.T01:CDS
CCAATGGCTAAAATGGTTGC+AGG 0.393820 1:-90791261 None:intergenic
CACCTTCTTAAAGATGTTCC+CGG 0.401953 1:+90792133 MsG0180005356.01.T01:CDS
ATATTCACTGAGCACTTCTC+TGG 0.410278 1:-90792316 None:intergenic
GGAGCTGCTGCACTGATTGT+TGG 0.411529 1:+90791989 MsG0180005356.01.T01:CDS
ACTCACTTGGACAGCCTTGT+TGG 0.426712 1:+90791947 MsG0180005356.01.T01:CDS
ACGGGAGAAGGACTTGAGTT+TGG 0.429869 1:+90792415 MsG0180005356.01.T01:three_prime_UTR
AGTGAAAGCTATAAAAGAAT+GGG 0.430526 1:+90791667 MsG0180005356.01.T01:CDS
GATAGTGAAGGGGCCATTGA+TGG 0.440309 1:+90792082 MsG0180005356.01.T01:CDS
CTTTGTTCAACACAGTTGGC+TGG 0.449203 1:-90791294 None:intergenic
GTCACTGCAGTTACATTTCG+CGG 0.450823 1:+90791914 MsG0180005356.01.T01:CDS
CTGAAATTCGCACTGCTCAA+AGG 0.456355 1:+90791229 MsG0180005356.01.T01:CDS
GCGCAAAACAACGGTTTCAA+TGG 0.461439 1:-90792466 None:intergenic
TGAAATTCGCACTGCTCAAA+GGG 0.462102 1:+90791230 MsG0180005356.01.T01:CDS
TTCACGAAGGTGACCATCAA+TGG 0.470504 1:-90792095 None:intergenic
GCAAGACATGGTGGTGGTAG+AGG 0.474656 1:+90791619 MsG0180005356.01.T01:CDS
CTCCTGCAAAGCAACCTTGT+TGG 0.478750 1:-90791817 None:intergenic
GTGAGTTGGTAATCAGCTCC+AGG 0.479782 1:-90791749 None:intergenic
CAGTGAAAGCTATAAAAGAA+TGG 0.482912 1:+90791666 MsG0180005356.01.T01:CDS
CTGTCCAAGTGAGTATCACT+AGG 0.483602 1:-90791938 None:intergenic
AAAGAACATCAATAAAGCAT+TGG 0.485622 1:+90792165 MsG0180005356.01.T01:CDS
GATGGTCACCTTCGTGAAGC+TGG 0.486168 1:+90792100 MsG0180005356.01.T01:CDS
TCTAGAATTGCAGGTCCACC+AGG 0.500155 1:-90792247 None:intergenic
TTGCGCAGTGTCGCTATATG+AGG 0.502378 1:+90792483 MsG0180005356.01.T01:three_prime_UTR
GGCTGGATTTGCAGTTCCAA+TGG 0.506046 1:-90791277 None:intergenic
TGGCACCTTCATTGGATGCT+AGG 0.506096 1:+90791597 MsG0180005356.01.T01:CDS
GATGTTCTTTGAAACAATCC+CGG 0.506109 1:-90792152 None:intergenic
ATTGTAATGAAAGTCTCAGT+TGG 0.506166 1:-90791156 None:intergenic
TTCACTGAGCACTTCTCTGG+TGG 0.523654 1:-90792313 None:intergenic
TCCTAGTGTTTGTGAATACA+TGG 0.528394 1:+90791577 MsG0180005356.01.T01:CDS
CGGCCCTAGTGATACTCACT+TGG 0.529910 1:+90791934 MsG0180005356.01.T01:CDS
CATCAATAAAGCATTGGTTG+AGG 0.540608 1:+90792171 MsG0180005356.01.T01:CDS
CTCAAGATGGACTGAAGACA+CGG 0.542132 1:+90792396 MsG0180005356.01.T01:three_prime_UTR
TGCTACCAAATATATCAAGA+TGG 0.542159 1:+90791197 MsG0180005356.01.T01:exon
ACCTTCTTAAAGATGTTCCC+GGG 0.543150 1:+90792134 MsG0180005356.01.T01:CDS
ATGTTCTTTGAAACAATCCC+GGG 0.547822 1:-90792151 None:intergenic
AGGTTGCTTTGCAGGAGGCA+CGG 0.555669 1:+90791823 MsG0180005356.01.T01:CDS
AGAAAGAAGTCAGCTCAAGA+TGG 0.559235 1:+90792383 MsG0180005356.01.T01:three_prime_UTR
GGACAAGCACTATTTGGAGA+TGG 0.563405 1:+90791968 MsG0180005356.01.T01:CDS
GTAAAGAAAGTGAAGGGTGA+AGG 0.563552 1:-90791109 None:intergenic
GCAGCCTCCTTGCCTAGTCT+AGG 0.568229 1:-90791644 None:intergenic
TCCCGGGAACATCTTTAAGA+AGG 0.569831 1:-90792135 None:intergenic
AGGCATGTCTACACCACTTG+TGG 0.569916 1:-90791729 None:intergenic
ACAAGTGGTGTAGACATGCC+TGG 0.572074 1:+90791731 MsG0180005356.01.T01:CDS
CAAATAGTGCTTGTCCAACA+AGG 0.572762 1:-90791961 None:intergenic
AGCGACACTGCGCAAAACAA+CGG 0.575560 1:-90792475 None:intergenic
CGCACTGCTCAAAGGGCAGA+AGG 0.577617 1:+90791237 MsG0180005356.01.T01:CDS
TCTTGCCTAGCATCCAATGA+AGG 0.579296 1:-90791602 None:intergenic
GTGATAAATCTATGATCAAG+AGG 0.584564 1:+90791516 MsG0180005356.01.T01:CDS
CAATTGCTCCAGATAGTGAA+GGG 0.593639 1:+90792071 MsG0180005356.01.T01:CDS
TTGATCGTTTGCACCACAAG+TGG 0.595788 1:+90791716 MsG0180005356.01.T01:CDS
TTTGTTGTAAAGAAAGTGAA+GGG 0.598189 1:-90791115 None:intergenic
AGAGGTACCTAGACTAGGCA+AGG 0.600359 1:+90791637 MsG0180005356.01.T01:CDS
ACAATTGCTCCAGATAGTGA+AGG 0.608112 1:+90792070 MsG0180005356.01.T01:CDS
TGTGCTTTGTTCAACACAGT+TGG 0.612931 1:-90791298 None:intergenic
GTTTGTTGTAAAGAAAGTGA+AGG 0.613093 1:-90791116 None:intergenic
TGGACTGAAGACACGGGAGA+AGG 0.613312 1:+90792403 MsG0180005356.01.T01:three_prime_UTR
TTGTAATCAGAAATTCCCAA+TGG 0.619803 1:-90792202 None:intergenic
CAACAAAGGTGCTCGTGTGT+TGG 0.620198 1:+90791877 MsG0180005356.01.T01:CDS
GTGGTAGAGGTACCTAGACT+AGG 0.623290 1:+90791632 MsG0180005356.01.T01:CDS
GTGAAGGAAGAGTGTTGTGG+TGG 0.633444 1:-90791093 None:intergenic
CAACAAGGTTGCTTTGCAGG+AGG 0.634702 1:+90791818 MsG0180005356.01.T01:CDS
ATTGGATGCTAGGCAAGACA+TGG 0.648366 1:+90791607 MsG0180005356.01.T01:CDS
CAATGGCTAAAATGGTTGCA+GGG 0.655281 1:-90791260 None:intergenic
GTGAAAGCTATAAAAGAATG+GGG 0.667253 1:+90791668 MsG0180005356.01.T01:CDS
GAGATACATGTACCTAACAG+AGG 0.667740 1:+90791538 MsG0180005356.01.T01:CDS
TCAAGATGGACTGAAGACAC+GGG 0.671941 1:+90792397 MsG0180005356.01.T01:three_prime_UTR
TGTCCAAGTGAGTATCACTA+GGG 0.674277 1:-90791937 None:intergenic
ACGGTTTCAATGGTAAGACC+CGG 0.675121 1:-90792456 None:intergenic
TGCTAGGCAAGACATGGTGG+TGG 0.675229 1:+90791613 MsG0180005356.01.T01:CDS
GCCATGTATTCACAAACACT+AGG 0.680230 1:-90791578 None:intergenic
GATTTGGCTGAGAACAACAA+AGG 0.683242 1:+90791863 MsG0180005356.01.T01:CDS
GGTACCTAGACTAGGCAAGG+AGG 0.684618 1:+90791640 MsG0180005356.01.T01:CDS
ATGTTAGTCCAGCTTCACGA+AGG 0.698828 1:-90792108 None:intergenic
AATTGCTCCAGATAGTGAAG+GGG 0.700404 1:+90792072 MsG0180005356.01.T01:CDS
AGGTATATGATGTACCAACA+AGG 0.704257 1:+90791803 MsG0180005356.01.T01:CDS
CTAGAATTGCAGGTCCACCA+GGG 0.711261 1:-90792246 None:intergenic
GGATGCTAGGCAAGACATGG+TGG 0.737305 1:+90791610 MsG0180005356.01.T01:CDS
AGGGTGAAGGAAGAGTGTTG+TGG 0.796794 1:-90791096 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATAGCAAAATATATTTAAA+TGG - Chr1:90791431-90791450 None:intergenic 15.0%
!! TGATATATCAAATAAATAAC+TGG - Chr1:90792653-90792672 None:intergenic 15.0%
!!! ATATTTTGCTATCTTTACAT+TGG + Chr1:90791438-90791457 MsG0180005356.01.T01:intron 20.0%
!!! ATTTAAATGGAAAGTATCTA+AGG - Chr1:90791418-90791437 None:intergenic 20.0%
!!! ATTTGCTTGATTTTTATGTA+AGG + Chr1:90792549-90792568 MsG0180005356.01.T01:three_prime_UTR 20.0%
! AAAATAGGTTTCTCAATTTC+TGG - Chr1:90792028-90792047 None:intergenic 25.0%
! AAAGAACATCAATAAAGCAT+TGG + Chr1:90792165-90792184 MsG0180005356.01.T01:CDS 25.0%
! ACTAACCATCTTGATATATT+TGG - Chr1:90791205-90791224 None:intergenic 25.0%
! AGTGAAAGCTATAAAAGAAT+GGG + Chr1:90791667-90791686 MsG0180005356.01.T01:CDS 25.0%
!! ATCATATACCTTTTTACGTA+TGG - Chr1:90791794-90791813 None:intergenic 25.0%
!! CTGATTACAATTCAATCTTT+TGG + Chr1:90792215-90792234 MsG0180005356.01.T01:CDS 25.0%
!! TTTGTTGTAAAGAAAGTGAA+GGG - Chr1:90791118-90791137 None:intergenic 25.0%
!!! GTGATTTTAAAGTAGAAATC+AGG - Chr1:90791327-90791346 None:intergenic 25.0%
AAAAATACTTACACATGCGT+TGG - Chr1:90791386-90791405 None:intergenic 30.0%
ATCATAGATTTATCACCTGA+AGG - Chr1:90791512-90791531 None:intergenic 30.0%
ATTGTAATGAAAGTCTCAGT+TGG - Chr1:90791159-90791178 None:intergenic 30.0%
CAGTGAAAGCTATAAAAGAA+TGG + Chr1:90791666-90791685 MsG0180005356.01.T01:CDS 30.0%
GATATTAGTTCAGCAAACTT+GGG - Chr1:90791474-90791493 None:intergenic 30.0%
GTGAAAGCTATAAAAGAATG+GGG + Chr1:90791668-90791687 MsG0180005356.01.T01:CDS 30.0%
GTGATAAATCTATGATCAAG+AGG + Chr1:90791516-90791535 MsG0180005356.01.T01:CDS 30.0%
TCATAGATTTATCACCTGAA+GGG - Chr1:90791511-90791530 None:intergenic 30.0%
TGATATTAGTTCAGCAAACT+TGG - Chr1:90791475-90791494 None:intergenic 30.0%
TGCTACCAAATATATCAAGA+TGG + Chr1:90791197-90791216 MsG0180005356.01.T01:exon 30.0%
TTGTAATCAGAAATTCCCAA+TGG - Chr1:90792205-90792224 None:intergenic 30.0%
! AAGTGAGTAATCTTTGACTT+TGG - Chr1:90791698-90791717 None:intergenic 30.0%
! ATCTTTTCATAATTCCCTTC+AGG + Chr1:90791494-90791513 MsG0180005356.01.T01:intron 30.0%
!! GTTTGTTGTAAAGAAAGTGA+AGG - Chr1:90791119-90791138 None:intergenic 30.0%
!! TTTCATCTTTTCAGGCTTTA+AGG - Chr1:90792292-90792311 None:intergenic 30.0%
!!! AACCTATTTTTGAGATGGTT+TGG + Chr1:90792038-90792057 MsG0180005356.01.T01:CDS 30.0%
!!! CTTGAGTTTGGTGTTTTATT+TGG + Chr1:90792427-90792446 MsG0180005356.01.T01:three_prime_UTR 30.0%
!!! TGAGAAACCTATTTTTGAGA+TGG + Chr1:90792033-90792052 MsG0180005356.01.T01:CDS 30.0%
AGGTATATGATGTACCAACA+AGG + Chr1:90791803-90791822 MsG0180005356.01.T01:CDS 35.0%
CTTTCAAAATCTCCTCTGTT+AGG - Chr1:90791553-90791572 None:intergenic 35.0%
GTCCAAACCATCTCAAAAAT+AGG - Chr1:90792043-90792062 None:intergenic 35.0%
TACCAACTCACAAAACTCTT+AGG + Chr1:90791761-90791780 MsG0180005356.01.T01:CDS 35.0%
TCCTAGTGTTTGTGAATACA+TGG + Chr1:90791577-90791596 MsG0180005356.01.T01:CDS 35.0%
! TCTACTTGATCTAGAATTGC+AGG - Chr1:90792259-90792278 None:intergenic 35.0%
!! ATGGAAAGTATCTAAGGTAG+AGG - Chr1:90791412-90791431 None:intergenic 35.0%
!! ATGTTCTTTGAAACAATCCC+GGG - Chr1:90792154-90792173 None:intergenic 35.0%
!! CATCAATAAAGCATTGGTTG+AGG + Chr1:90792171-90792190 MsG0180005356.01.T01:CDS 35.0%
!! GATGTTCTTTGAAACAATCC+CGG - Chr1:90792155-90792174 None:intergenic 35.0%
!!! GTTTGGTGTTTTATTTGGCT+TGG + Chr1:90792432-90792451 MsG0180005356.01.T01:three_prime_UTR 35.0%
AATTGCTCCAGATAGTGAAG+GGG + Chr1:90792072-90792091 MsG0180005356.01.T01:CDS 40.0%
ACAATTGCTCCAGATAGTGA+AGG + Chr1:90792070-90792089 MsG0180005356.01.T01:CDS 40.0%
ACCTTCTTAAAGATGTTCCC+GGG + Chr1:90792134-90792153 MsG0180005356.01.T01:CDS 40.0%
AGAAAGAAGTCAGCTCAAGA+TGG + Chr1:90792383-90792402 MsG0180005356.01.T01:three_prime_UTR 40.0%
ATATTCACTGAGCACTTCTC+TGG - Chr1:90792319-90792338 None:intergenic 40.0%
CAAATAGTGCTTGTCCAACA+AGG - Chr1:90791964-90791983 None:intergenic 40.0%
CAATGGCTAAAATGGTTGCA+GGG - Chr1:90791263-90791282 None:intergenic 40.0%
CAATTGCTCCAGATAGTGAA+GGG + Chr1:90792071-90792090 MsG0180005356.01.T01:CDS 40.0%
CACCTTCTTAAAGATGTTCC+CGG + Chr1:90792133-90792152 MsG0180005356.01.T01:CDS 40.0%
CTTGTTGGACAAGCACTATT+TGG + Chr1:90791962-90791981 MsG0180005356.01.T01:CDS 40.0%
GAGATACATGTACCTAACAG+AGG + Chr1:90791538-90791557 MsG0180005356.01.T01:CDS 40.0%
GATTTGGCTGAGAACAACAA+AGG + Chr1:90791863-90791882 MsG0180005356.01.T01:CDS 40.0%
GCCATGTATTCACAAACACT+AGG - Chr1:90791581-90791600 None:intergenic 40.0%
GCTTCGTTTGGCTAAAGATT+TGG + Chr1:90791847-90791866 MsG0180005356.01.T01:CDS 40.0%
GTAAAGAAAGTGAAGGGTGA+AGG - Chr1:90791112-90791131 None:intergenic 40.0%
GTCTTCGTCCATACGTAAAA+AGG + Chr1:90791783-90791802 MsG0180005356.01.T01:CDS 40.0%
TGAAATTCGCACTGCTCAAA+GGG + Chr1:90791230-90791249 MsG0180005356.01.T01:CDS 40.0%
TGAATACATGGCACCTTCAT+TGG + Chr1:90791589-90791608 MsG0180005356.01.T01:CDS 40.0%
TGCAGTTCCAATGGCTAAAA+TGG - Chr1:90791271-90791290 None:intergenic 40.0%
TGTCCAAGTGAGTATCACTA+GGG - Chr1:90791940-90791959 None:intergenic 40.0%
! GTTGAGGCTTTTGAACCATT+GGG + Chr1:90792187-90792206 MsG0180005356.01.T01:CDS 40.0%
! TGTGCTTTGTTCAACACAGT+TGG - Chr1:90791301-90791320 None:intergenic 40.0%
!! AGAGAAGTGCTCAGTGAATA+TGG + Chr1:90792318-90792337 MsG0180005356.01.T01:three_prime_UTR 40.0%
!! GACCTAAGAGTTTTGTGAGT+TGG - Chr1:90791766-90791785 None:intergenic 40.0%
!! GGTTTCTCAATTTCTGGTAC+TGG - Chr1:90792022-90792041 None:intergenic 40.0%
!!! GTGTTTTATTTGGCTTGGAC+CGG + Chr1:90792437-90792456 MsG0180005356.01.T01:three_prime_UTR 40.0%
!!! TGTTTTATTTGGCTTGGACC+GGG + Chr1:90792438-90792457 MsG0180005356.01.T01:three_prime_UTR 40.0%
ACGGTTTCAATGGTAAGACC+CGG - Chr1:90792459-90792478 None:intergenic 45.0%
ATGTTAGTCCAGCTTCACGA+AGG - Chr1:90792111-90792130 None:intergenic 45.0%
ATTGGATGCTAGGCAAGACA+TGG + Chr1:90791607-90791626 MsG0180005356.01.T01:CDS 45.0%
CCAATGGCTAAAATGGTTGC+AGG - Chr1:90791264-90791283 None:intergenic 45.0%
CTGAAATTCGCACTGCTCAA+AGG + Chr1:90791229-90791248 MsG0180005356.01.T01:CDS 45.0%
CTGTCCAAGTGAGTATCACT+AGG - Chr1:90791941-90791960 None:intergenic 45.0%
CTTTGTTCAACACAGTTGGC+TGG - Chr1:90791297-90791316 None:intergenic 45.0%
GCGCAAAACAACGGTTTCAA+TGG - Chr1:90792469-90792488 None:intergenic 45.0%
GGACAAGCACTATTTGGAGA+TGG + Chr1:90791968-90791987 MsG0180005356.01.T01:CDS 45.0%
GTCACTGCAGTTACATTTCG+CGG + Chr1:90791914-90791933 MsG0180005356.01.T01:CDS 45.0%
TCTTGCCTAGCATCCAATGA+AGG - Chr1:90791605-90791624 None:intergenic 45.0%
TTCACGAAGGTGACCATCAA+TGG - Chr1:90792098-90792117 None:intergenic 45.0%
TTGATCGTTTGCACCACAAG+TGG + Chr1:90791716-90791735 MsG0180005356.01.T01:CDS 45.0%
! ATCTTTTGGATTGCACACCC+TGG + Chr1:90792229-90792248 MsG0180005356.01.T01:CDS 45.0%
! CTGGTGGCTTTCATCTTTTC+AGG - Chr1:90792300-90792319 None:intergenic 45.0%
! GGTTGAGGCTTTTGAACCAT+TGG + Chr1:90792186-90792205 MsG0180005356.01.T01:CDS 45.0%
! TACCAACAAGGTTGCTTTGC+AGG + Chr1:90791815-90791834 MsG0180005356.01.T01:CDS 45.0%
! TCCCGGGAACATCTTTAAGA+AGG - Chr1:90792138-90792157 None:intergenic 45.0%
!! CCTGCAACCATTTTAGCCAT+TGG + Chr1:90791261-90791280 MsG0180005356.01.T01:CDS 45.0%
!! CTCAAGATGGACTGAAGACA+CGG + Chr1:90792396-90792415 MsG0180005356.01.T01:three_prime_UTR 45.0%
!! TCAAGATGGACTGAAGACAC+GGG + Chr1:90792397-90792416 MsG0180005356.01.T01:three_prime_UTR 45.0%
ACAAGTGGTGTAGACATGCC+TGG + Chr1:90791731-90791750 MsG0180005356.01.T01:CDS 50.0%
ACGGGAGAAGGACTTGAGTT+TGG + Chr1:90792415-90792434 MsG0180005356.01.T01:three_prime_UTR 50.0%
AGCGACACTGCGCAAAACAA+CGG - Chr1:90792478-90792497 None:intergenic 50.0%
AGGCATGTCTACACCACTTG+TGG - Chr1:90791732-90791751 None:intergenic 50.0%
CTAGAATTGCAGGTCCACCA+GGG - Chr1:90792249-90792268 None:intergenic 50.0%
CTCCTGCAAAGCAACCTTGT+TGG - Chr1:90791820-90791839 None:intergenic 50.0%
GATAGTGAAGGGGCCATTGA+TGG + Chr1:90792082-90792101 MsG0180005356.01.T01:CDS 50.0%
GGCTGGATTTGCAGTTCCAA+TGG - Chr1:90791280-90791299 None:intergenic 50.0%
TCAATGGCCCCTTCACTATC+TGG - Chr1:90792082-90792101 None:intergenic 50.0%
TGGCACCTTCATTGGATGCT+AGG + Chr1:90791597-90791616 MsG0180005356.01.T01:CDS 50.0%
TTCACTGAGCACTTCTCTGG+TGG - Chr1:90792316-90792335 None:intergenic 50.0%
! ACTCACTTGGACAGCCTTGT+TGG + Chr1:90791947-90791966 MsG0180005356.01.T01:CDS 50.0%
! CAACAAGGTTGCTTTGCAGG+AGG + Chr1:90791818-90791837 MsG0180005356.01.T01:CDS 50.0%
! TCTAGAATTGCAGGTCCACC+AGG - Chr1:90792250-90792269 None:intergenic 50.0%
! TTGCGCAGTGTCGCTATATG+AGG + Chr1:90792483-90792502 MsG0180005356.01.T01:three_prime_UTR 50.0%
! TTTTGGATTGCACACCCTGG+TGG + Chr1:90792232-90792251 MsG0180005356.01.T01:CDS 50.0%
!! AGAGGTACCTAGACTAGGCA+AGG + Chr1:90791637-90791656 MsG0180005356.01.T01:CDS 50.0%
!! AGGGTGAAGGAAGAGTGTTG+TGG - Chr1:90791099-90791118 None:intergenic 50.0%
!! CAACAAAGGTGCTCGTGTGT+TGG + Chr1:90791877-90791896 MsG0180005356.01.T01:CDS 50.0%
!! GTGAGTTGGTAATCAGCTCC+AGG - Chr1:90791752-90791771 None:intergenic 50.0%
!! GTGGTAGAGGTACCTAGACT+AGG + Chr1:90791632-90791651 MsG0180005356.01.T01:CDS 50.0%
CGGCCCTAGTGATACTCACT+TGG + Chr1:90791934-90791953 MsG0180005356.01.T01:CDS 55.0%
GATGGTCACCTTCGTGAAGC+TGG + Chr1:90792100-90792119 MsG0180005356.01.T01:CDS 55.0%
GGATGCTAGGCAAGACATGG+TGG + Chr1:90791610-90791629 MsG0180005356.01.T01:CDS 55.0%
GGTACCTAGACTAGGCAAGG+AGG + Chr1:90791640-90791659 MsG0180005356.01.T01:CDS 55.0%
TGCTAGGCAAGACATGGTGG+TGG + Chr1:90791613-90791632 MsG0180005356.01.T01:CDS 55.0%
TGGACTGAAGACACGGGAGA+AGG + Chr1:90792403-90792422 MsG0180005356.01.T01:three_prime_UTR 55.0%
! AGGTTGCTTTGCAGGAGGCA+CGG + Chr1:90791823-90791842 MsG0180005356.01.T01:CDS 55.0%
!! GCAAGACATGGTGGTGGTAG+AGG + Chr1:90791619-90791638 MsG0180005356.01.T01:CDS 55.0%
!! GGAGCTGCTGCACTGATTGT+TGG + Chr1:90791989-90792008 MsG0180005356.01.T01:CDS 55.0%
CGCACTGCTCAAAGGGCAGA+AGG + Chr1:90791237-90791256 MsG0180005356.01.T01:CDS 60.0%
GCAGCCTCCTTGCCTAGTCT+AGG - Chr1:90791647-90791666 None:intergenic 60.0%
! AGGAGGCACGGTGCTTCGTT+TGG + Chr1:90791835-90791854 MsG0180005356.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 90791094 90792781 90791094 ID=MsG0180005356.01;Name=MsG0180005356.01
Chr1 mRNA 90791094 90792781 90791094 ID=MsG0180005356.01.T01;Parent=MsG0180005356.01;Name=MsG0180005356.01.T01;_AED=0.28;_eAED=0.28;_QI=122|1|1|1|1|1|2|493|316
Chr1 exon 90791094 90791393 90791094 ID=MsG0180005356.01.T01:exon:14688;Parent=MsG0180005356.01.T01
Chr1 exon 90791516 90792781 90791516 ID=MsG0180005356.01.T01:exon:14689;Parent=MsG0180005356.01.T01
Chr1 five_prime_UTR 90791094 90791215 90791094 ID=MsG0180005356.01.T01:five_prime_utr;Parent=MsG0180005356.01.T01
Chr1 CDS 90791216 90791393 90791216 ID=MsG0180005356.01.T01:cds;Parent=MsG0180005356.01.T01
Chr1 CDS 90791516 90792288 90791516 ID=MsG0180005356.01.T01:cds;Parent=MsG0180005356.01.T01
Chr1 three_prime_UTR 90792289 90792781 90792289 ID=MsG0180005356.01.T01:three_prime_utr;Parent=MsG0180005356.01.T01
Gene Sequence

>MsG0180005356.01.T01

ATGGTTAGTGTGTCTGAAATTCGCACTGCTCAAAGGGCAGAAGGCCCTGCAACCATTTTAGCCATTGGAACTGCAAATCCAGCCAACTGTGTTGAACAAAGCACATATCCTGATTTCTACTTTAAAATCACAAATAGTGAACACAAGACTGAACTCAAAGAGAAATTCCAACGCATGTGTGATAAATCTATGATCAAGAGGAGATACATGTACCTAACAGAGGAGATTTTGAAAGAGAATCCTAGTGTTTGTGAATACATGGCACCTTCATTGGATGCTAGGCAAGACATGGTGGTGGTAGAGGTACCTAGACTAGGCAAGGAGGCTGCAGTGAAAGCTATAAAAGAATGGGGTCAACCAAAGTCAAAGATTACTCACTTGATCGTTTGCACCACAAGTGGTGTAGACATGCCTGGAGCTGATTACCAACTCACAAAACTCTTAGGTCTTCGTCCATACGTAAAAAGGTATATGATGTACCAACAAGGTTGCTTTGCAGGAGGCACGGTGCTTCGTTTGGCTAAAGATTTGGCTGAGAACAACAAAGGTGCTCGTGTGTTGGTTGTCTGTTCTGAAGTCACTGCAGTTACATTTCGCGGCCCTAGTGATACTCACTTGGACAGCCTTGTTGGACAAGCACTATTTGGAGATGGAGCTGCTGCACTGATTGTTGGTTCAGATCCAGTACCAGAAATTGAGAAACCTATTTTTGAGATGGTTTGGACTGCACAAACAATTGCTCCAGATAGTGAAGGGGCCATTGATGGTCACCTTCGTGAAGCTGGACTAACATTTCACCTTCTTAAAGATGTTCCCGGGATTGTTTCAAAGAACATCAATAAAGCATTGGTTGAGGCTTTTGAACCATTGGGAATTTCTGATTACAATTCAATCTTTTGGATTGCACACCCTGGTGGACCTGCAATTCTAGATCAAGTAGAGCAAAGTTAG

Protein sequence

>MsG0180005356.01.T01

MVSVSEIRTAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPSVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNINKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQS*