AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016160.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016160.01.T02 MTR_5g017130 72.781 169 39 3 82 250 15 176 6.35e-83 246
MsG0380016160.01.T02 MTR_8g107310 50.000 110 53 1 141 250 185 292 1.86e-28 109
MsG0380016160.01.T02 MTR_8g031560 45.000 120 58 2 137 250 163 280 1.90e-25 101
MsG0380016160.01.T01 MTR_5g017130 72.781 169 39 3 99 267 15 176 1.35e-82 245
MsG0380016160.01.T01 MTR_8g107310 50.000 110 53 1 158 267 185 292 2.72e-28 109
MsG0380016160.01.T01 MTR_8g031560 47.222 108 55 1 160 267 175 280 3.06e-25 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016160.01.T02 AT3G11400 46.296 108 57 1 143 250 188 294 2.35e-25 101
MsG0380016160.01.T02 AT3G11400 46.296 108 57 1 143 250 215 321 4.51e-25 101
MsG0380016160.01.T02 AT5G06000 44.860 107 58 1 143 249 181 286 3.28e-24 99.0
MsG0380016160.01.T01 AT3G11400 46.296 108 57 1 160 267 188 294 4.17e-25 101
MsG0380016160.01.T01 AT3G11400 46.296 108 57 1 160 267 215 321 7.96e-25 101
MsG0380016160.01.T01 AT5G06000 44.860 107 58 1 160 266 181 286 5.29e-24 99.0

Find 37 sgRNAs with CRISPR-Local

Find 416 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAACAAAAGCAGAAGGTT+TGG 0.364194 3:-79861063 None:intergenic
AACCCTGATCTCCTTAAGTT+CGG 0.400139 3:+79861569 MsG0380016160.01.T01:CDS
CCGTAATACCCATGTCTTTG+TGG 0.404244 3:-79861607 None:intergenic
ACCCTGATCTCCTTAAGTTC+GGG 0.425845 3:+79861570 MsG0380016160.01.T01:CDS
CCACAAAGACATGGGTATTA+CGG 0.427307 3:+79861607 MsG0380016160.01.T01:CDS
TCCCCGAACTTAAGGAGATC+AGG 0.428112 3:-79861572 None:intergenic
CATAGCTGTCCCCGAACTTA+AGG 0.439402 3:-79861580 None:intergenic
CAATTTAATCAACAAGTTTG+AGG 0.459828 3:+79861025 MsG0380016160.01.T01:CDS
GATCGAAGATAAGAAAAGCT+TGG 0.462275 3:+79860969 MsG0380016160.01.T01:five_prime_UTR
CCCTGCCTGGAGATGACTAC+CGG 0.474514 3:+79861497 MsG0380016160.01.T01:CDS
GGTACAAACATACCCGTAAG+AGG 0.480271 3:-79861473 None:intergenic
TATGTTTGTACCTCCCTGCC+TGG 0.488397 3:+79861484 MsG0380016160.01.T01:CDS
CCCGGTAGTCATCTCCAGGC+AGG 0.500095 3:-79861498 None:intergenic
AAAAGAAGTCTGTTCTGGTA+GGG 0.527000 3:+79861534 MsG0380016160.01.T01:CDS
ATGACCCGGTAGTCATCTCC+AGG 0.543487 3:-79861502 None:intergenic
CTCATGTCCGTGATCCCTCA+TGG 0.563988 3:+79861648 MsG0380016160.01.T01:CDS
TACAAACATACCCGTAAGAG+GGG 0.564254 3:-79861471 None:intergenic
AAAGAAGTCTGTTCTGGTAG+GGG 0.566121 3:+79861535 MsG0380016160.01.T01:CDS
CTGTAGAAAACAAAAGCAGA+AGG 0.584130 3:-79861068 None:intergenic
CCCCGAACTTAAGGAGATCA+GGG 0.592136 3:-79861571 None:intergenic
CTATGCCGTCCACAAAGACA+TGG 0.597462 3:+79861598 MsG0380016160.01.T01:CDS
CAAACCACCATGAGGGATCA+CGG 0.602901 3:-79861655 None:intergenic
AATACCCATGTCTTTGTGGA+CGG 0.607168 3:-79861603 None:intergenic
CCGGTAGTCATCTCCAGGCA+GGG 0.612399 3:-79861497 None:intergenic
GTACAAACATACCCGTAAGA+GGG 0.619660 3:-79861472 None:intergenic
CCTGCCTGGAGATGACTACC+GGG 0.635772 3:+79861498 MsG0380016160.01.T01:CDS
AAAATATGTTGTCTGATATG+CGG 0.636226 3:-79861331 None:intergenic
CATGAGGGATCACGGACATG+AGG 0.644139 3:-79861647 None:intergenic
TCGAATGCAAACCACCATGA+GGG 0.652949 3:-79861662 None:intergenic
CCCTGATCTCCTTAAGTTCG+GGG 0.661793 3:+79861571 MsG0380016160.01.T01:CDS
GTCGAATGCAAACCACCATG+AGG 0.672918 3:-79861663 None:intergenic
TATGCCGTCCACAAAGACAT+GGG 0.675272 3:+79861599 MsG0380016160.01.T01:CDS
ATGTCCGTGATCCCTCATGG+TGG 0.691434 3:+79861651 MsG0380016160.01.T01:CDS
AAATCAACACTGTCTTCACA+CGG 0.691553 3:-79861002 None:intergenic
ACAAACATACCCGTAAGAGG+GGG 0.722614 3:-79861470 None:intergenic
GTAGTCATCTCCAGGCAGGG+AGG 0.745865 3:-79861494 None:intergenic
TCAACACTGTCTTCACACGG+TGG 0.749721 3:-79860999 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAAAAATAAATTATAT+TGG - Chr3:79864183-79864202 None:intergenic 0.0%
!!! ATTAATTTGAAATTTACTAA+AGG - Chr3:79861221-79861240 None:intergenic 10.0%
!! TTCAATAGTATCTAATAAAA+AGG - Chr3:79862875-79862894 None:intergenic 15.0%
!! ATATAATCAATACGAAAAAG+TGG - Chr3:79864364-79864383 None:intergenic 20.0%
!! CTATTGTATTTCAACATAAA+AGG + Chr3:79862901-79862920 MsG0380016160.01.T01:intron 20.0%
!! TATTAATGTCATTGTAACTT+GGG - Chr3:79862204-79862223 None:intergenic 20.0%
!! TTATTAATGTCATTGTAACT+TGG - Chr3:79862205-79862224 None:intergenic 20.0%
!!! ACCAAATTTGTTTATTCATT+GGG - Chr3:79862333-79862352 None:intergenic 20.0%
!!! AGTTATTTCACATAATCAAT+CGG - Chr3:79864160-79864179 None:intergenic 20.0%
!!! ATATTTAGAGCAGTTAATAT+GGG + Chr3:79864198-79864217 MsG0380016160.01.T01:intron 20.0%
!!! ATTTGAGATAATAGAAAAAC+AGG - Chr3:79861113-79861132 None:intergenic 20.0%
!!! CTTTTATGTTGAAATACAAT+AGG - Chr3:79862903-79862922 None:intergenic 20.0%
!!! TATATTTAGAGCAGTTAATA+TGG + Chr3:79864197-79864216 MsG0380016160.01.T01:intron 20.0%
! AAAATATGTTGTCTGATATG+CGG - Chr3:79861334-79861353 None:intergenic 25.0%
! AAAGTCAATGTATTCGAAAT+TGG - Chr3:79862669-79862688 None:intergenic 25.0%
! AAGAAAGAAAGATGGAAAAT+AGG + Chr3:79863361-79863380 MsG0380016160.01.T01:intron 25.0%
! AATTGTTTACCTAATGATGT+TGG - Chr3:79862494-79862513 None:intergenic 25.0%
! ACGTTTGATTGAATTTGATT+TGG - Chr3:79862397-79862416 None:intergenic 25.0%
! ATAAATAGTAGCCTATACTT+AGG - Chr3:79864728-79864747 None:intergenic 25.0%
! ATAATAGAAAAACAGGAAAG+CGG - Chr3:79861106-79861125 None:intergenic 25.0%
! CAATGAATAAACAAATTTGG+TGG + Chr3:79862332-79862351 MsG0380016160.01.T01:intron 25.0%
! CAATTATTACCAACATCATT+AGG + Chr3:79862482-79862501 MsG0380016160.01.T01:intron 25.0%
! CAATTTAATCAACAAGTTTG+AGG + Chr3:79861025-79861044 MsG0380016160.01.T01:CDS 25.0%
! GCATTATAAAGAAAGAAAGA+TGG + Chr3:79863353-79863372 MsG0380016160.01.T01:intron 25.0%
! TCCCAATGAATAAACAAATT+TGG + Chr3:79862329-79862348 MsG0380016160.01.T01:intron 25.0%
! TCTTTCTTTCTTTATAATGC+CGG - Chr3:79863353-79863372 None:intergenic 25.0%
! TGAAGAATGTTTGATTCTTA+AGG - Chr3:79864061-79864080 None:intergenic 25.0%
! TTCCAAAAAATTGTTCTCTT+GGG - Chr3:79863449-79863468 None:intergenic 25.0%
! TTCTACAAAAGTAGTTTGAT+GGG - Chr3:79863616-79863635 None:intergenic 25.0%
! TTTCCAAAAAATTGTTCTCT+TGG - Chr3:79863450-79863469 None:intergenic 25.0%
! TTTCTACAAAAGTAGTTTGA+TGG - Chr3:79863617-79863636 None:intergenic 25.0%
!! CACCAAATTTGTTTATTCAT+TGG - Chr3:79862334-79862353 None:intergenic 25.0%
!! TTGGAAAACTTTTCCAATAA+AGG + Chr3:79863463-79863482 MsG0380016160.01.T01:intron 25.0%
!!! TTTTCAAGTTTAAAGAGGAT+GGG - Chr3:79863765-79863784 None:intergenic 25.0%
!!! TTTTGAAAAGGCTTATGATT+TGG - Chr3:79864034-79864053 None:intergenic 25.0%
AAACTCAACGTAAACAACTA+TGG - Chr3:79864843-79864862 None:intergenic 30.0%
AAAGTTAACAAAGCCAAAAC+GGG - Chr3:79864608-79864627 None:intergenic 30.0%
AACATATGTTGTCTGATATG+CGG - Chr3:79861250-79861269 None:intergenic 30.0%
AATGTTCTAGTGGAAAGATA+TGG - Chr3:79863119-79863138 None:intergenic 30.0%
AGAAAGGTTTGTGTATGATT+TGG - Chr3:79862274-79862293 None:intergenic 30.0%
AGAATGTTTGATTCTTAAGG+TGG - Chr3:79864058-79864077 None:intergenic 30.0%
ATTTCGTACTTAGAGTTGAA+TGG + Chr3:79864686-79864705 MsG0380016160.01.T01:CDS 30.0%
CAAAGTTAACAAAGCCAAAA+CGG - Chr3:79864609-79864628 None:intergenic 30.0%
CAATGTATTCGAAATTGGAA+GGG - Chr3:79862664-79862683 None:intergenic 30.0%
CATTAAACCACTAAAACCTT+CGG + Chr3:79863817-79863836 MsG0380016160.01.T01:intron 30.0%
GAAAGATATGGTGTAAAGAT+GGG - Chr3:79863107-79863126 None:intergenic 30.0%
GAAAGGTTTGTGTATGATTT+GGG - Chr3:79862273-79862292 None:intergenic 30.0%
GGAAATAGATATCTTAGTCT+TGG - Chr3:79863427-79863446 None:intergenic 30.0%
GGGGATATTAATATTCAAAG+AGG - Chr3:79863890-79863909 None:intergenic 30.0%
TAATAGAAAAACAGGAAAGC+GGG - Chr3:79861105-79861124 None:intergenic 30.0%
TCAATGTATTCGAAATTGGA+AGG - Chr3:79862665-79862684 None:intergenic 30.0%
TCCAAAAAATTGTTCTCTTG+GGG - Chr3:79863448-79863467 None:intergenic 30.0%
TCTACAAAAGTAGTTTGATG+GGG - Chr3:79863615-79863634 None:intergenic 30.0%
TGGAGGGAATATGAATAAAA+AGG - Chr3:79862300-79862319 None:intergenic 30.0%
TGTTTATTCATTGGGAATGT+TGG - Chr3:79862325-79862344 None:intergenic 30.0%
TTGAATATTAATATCCCCGT+TGG + Chr3:79863892-79863911 MsG0380016160.01.T01:intron 30.0%
TTTCTATAGGTTGTGTCTTT+GGG - Chr3:79861786-79861805 None:intergenic 30.0%
! AACAGACTTCTTTTTGTCAT+CGG - Chr3:79861528-79861547 None:intergenic 30.0%
! AAGATAATGAAGCTCTTTTG+AGG - Chr3:79863142-79863161 None:intergenic 30.0%
! AAGCTTTTCTTATCTTCGAT+CGG - Chr3:79860970-79860989 None:intergenic 30.0%
! AATCTTTTAACGGAGTTGTT+AGG - Chr3:79862769-79862788 None:intergenic 30.0%
! AGTTTTCCGTTCATGTATTT+GGG - Chr3:79863532-79863551 None:intergenic 30.0%
! ATGAATAAAAAGGTGCAGAA+AGG - Chr3:79862290-79862309 None:intergenic 30.0%
! CAACAAGAAGAATTCTTTTC+AGG + Chr3:79864465-79864484 MsG0380016160.01.T01:CDS 30.0%
! GTGGGAAAACAATCTTTTAA+CGG - Chr3:79862779-79862798 None:intergenic 30.0%
! TAGTTTTCCGTTCATGTATT+TGG - Chr3:79863533-79863552 None:intergenic 30.0%
! TTTTCTATAGGTTGTGTCTT+TGG - Chr3:79861787-79861806 None:intergenic 30.0%
!! AGACATCGACTATTTTCTAT+AGG - Chr3:79861799-79861818 None:intergenic 30.0%
!! ATTCTTCTTGTTGTTGTCAT+CGG - Chr3:79864458-79864477 None:intergenic 30.0%
!! GTAATAATTGCGTTTGTTGT+GGG - Chr3:79862472-79862491 None:intergenic 30.0%
!! TCTTAAGGTGGATTTTGAAA+AGG - Chr3:79864046-79864065 None:intergenic 30.0%
!! TTTGGATGAATTTGATGATG+TGG - Chr3:79862379-79862398 None:intergenic 30.0%
!!! AATCAATCGGCTTTTTTGAA+AGG - Chr3:79864147-79864166 None:intergenic 30.0%
!!! AATTTTTTGAATTGTGCGCA+AGG - Chr3:79863556-79863575 None:intergenic 30.0%
!!! CAAGGTTTTCAAGTTTAAAG+AGG - Chr3:79863770-79863789 None:intergenic 30.0%
!!! GTTTTCAAGTTTAAAGAGGA+TGG - Chr3:79863766-79863785 None:intergenic 30.0%
!!! TGCTTTTGTTTTCTACAGTA+AGG + Chr3:79861073-79861092 MsG0380016160.01.T01:intron 30.0%
!!! TTTTTTGAAAGGTAGGAACT+TGG - Chr3:79864136-79864155 None:intergenic 30.0%
AAAAAGAAGTCTGTTCTGGT+AGG + Chr3:79861533-79861552 MsG0380016160.01.T01:CDS 35.0%
AAAAGAAGTCTGTTCTGGTA+GGG + Chr3:79861534-79861553 MsG0380016160.01.T01:CDS 35.0%
AAATCAACACTGTCTTCACA+CGG - Chr3:79861005-79861024 None:intergenic 35.0%
AATAGGAATCGCATTCAAGA+CGG + Chr3:79863378-79863397 MsG0380016160.01.T01:intron 35.0%
AATCCAATGAGAGTTCCTTT+GGG - Chr3:79863305-79863324 None:intergenic 35.0%
AATCTCATCGCGTGTTAATT+TGG - Chr3:79862525-79862544 None:intergenic 35.0%
AGGGGGAAGGAAAATTAATT+GGG - Chr3:79863273-79863292 None:intergenic 35.0%
AGTATGTCTATCCTTGTGAA+TGG - Chr3:79863922-79863941 None:intergenic 35.0%
ATTTGAGTCTTCTTGCGAAA+TGG - Chr3:79863181-79863200 None:intergenic 35.0%
CAACTCTAAGTACGAAATTG+TGG - Chr3:79864684-79864703 None:intergenic 35.0%
CACTCATAAAACATACACGT+CGG + Chr3:79862116-79862135 MsG0380016160.01.T01:intron 35.0%
CTGTAGAAAACAAAAGCAGA+AGG - Chr3:79861071-79861090 None:intergenic 35.0%
GAAAACAAAAGCAGAAGGTT+TGG - Chr3:79861066-79861085 None:intergenic 35.0%
GAAGAGATGCAAAGAAGATT+CGG + Chr3:79862439-79862458 MsG0380016160.01.T01:intron 35.0%
GATCGAAGATAAGAAAAGCT+TGG + Chr3:79860969-79860988 MsG0380016160.01.T01:five_prime_UTR 35.0%
GGAAAATTAATTGGGTGAGT+TGG - Chr3:79863265-79863284 None:intergenic 35.0%
GGAAAGATATGGTGTAAAGA+TGG - Chr3:79863108-79863127 None:intergenic 35.0%
GTAGAAATTAATCTTCAGCC+TGG + Chr3:79863630-79863649 MsG0380016160.01.T01:intron 35.0%
GTTGTGTTTGCTTGTATTTG+AGG - Chr3:79861826-79861845 None:intergenic 35.0%
TAAATGGATAGAGTGGATGA+AGG - Chr3:79863962-79863981 None:intergenic 35.0%
TAATGACATGACCAAAAGAC+TGG - Chr3:79864546-79864565 None:intergenic 35.0%
TAGTGGTTTAATGTCCAATG+CGG - Chr3:79863810-79863829 None:intergenic 35.0%
TATTGTCTCTGTGTATCTAC+AGG + Chr3:79864271-79864290 MsG0380016160.01.T01:intron 35.0%
TGACAAAAAGAAGTCTGTTC+TGG + Chr3:79861529-79861548 MsG0380016160.01.T01:CDS 35.0%
TGATTATATACCTCCGATTG+CGG + Chr3:79864375-79864394 MsG0380016160.01.T01:CDS 35.0%
TTTGTGCTAAATGGATAGAG+TGG - Chr3:79863969-79863988 None:intergenic 35.0%
! AAATTAATTGGGTGAGTTGG+AGG - Chr3:79863262-79863281 None:intergenic 35.0%
! AATTAATTGGGTGAGTTGGA+GGG - Chr3:79863261-79863280 None:intergenic 35.0%
! AGATAATTTGTGGACCTTGA+AGG - Chr3:79863683-79863702 None:intergenic 35.0%
! AGTGCTATTGAAAGAGTCAA+TGG + Chr3:79864649-79864668 MsG0380016160.01.T01:CDS 35.0%
! ATGGATCTAGTACAAGCTTT+TGG - Chr3:79862951-79862970 None:intergenic 35.0%
! CCTATACTTAGGTTGTTGTT+GGG - Chr3:79864717-79864736 None:intergenic 35.0%
! CGCGTGTTAATTTGGAAAAA+CGG - Chr3:79862517-79862536 None:intergenic 35.0%
! CTATACTTAGGTTGTTGTTG+GGG - Chr3:79864716-79864735 None:intergenic 35.0%
! GAGAAGGACTTTATTTGTGT+GGG - Chr3:79862797-79862816 None:intergenic 35.0%
! GGAGAATGATCACTTCTTTT+CGG - Chr3:79862693-79862712 None:intergenic 35.0%
! GGTAATAATTGCGTTTGTTG+TGG - Chr3:79862473-79862492 None:intergenic 35.0%
! GTGCTATTGAAAGAGTCAAT+GGG + Chr3:79864650-79864669 MsG0380016160.01.T01:CDS 35.0%
! TGAGTATACATTTTCGCTAC+TGG + Chr3:79864763-79864782 MsG0380016160.01.T01:three_prime_UTR 35.0%
!! AGGCTTATGATTTGGTAGAT+TGG - Chr3:79864026-79864045 None:intergenic 35.0%
!! CAAGAAGAATTCTTTTCAGG+TGG + Chr3:79864468-79864487 MsG0380016160.01.T01:CDS 35.0%
!! GAATTTTGGTGGTTCGAAAT+TGG - Chr3:79861880-79861899 None:intergenic 35.0%
!! GCTTATGATTTGGTAGATTG+GGG - Chr3:79864024-79864043 None:intergenic 35.0%
!! GCTTTTTGGTGTATATGATG+CGG - Chr3:79864002-79864021 None:intergenic 35.0%
!! GGCTTATGATTTGGTAGATT+GGG - Chr3:79864025-79864044 None:intergenic 35.0%
!! TCTTTTGAGGAATGTTCTAG+TGG - Chr3:79863129-79863148 None:intergenic 35.0%
!!! AATCGGCTTTTTTGAAAGGT+AGG - Chr3:79864143-79864162 None:intergenic 35.0%
!!! CGACGACGTTTTTTATCAAA+AGG + Chr3:79861433-79861452 MsG0380016160.01.T01:CDS 35.0%
!!! TCCCCAAGAGAACAATTTTT+TGG + Chr3:79863444-79863463 MsG0380016160.01.T01:intron 35.0%
!!! TTTGCTAAGGGGTTTTGAAT+TGG - Chr3:79863659-79863678 None:intergenic 35.0%
AAAGAAGTCTGTTCTGGTAG+GGG + Chr3:79861535-79861554 MsG0380016160.01.T01:CDS 40.0%
AACCCTGATCTCCTTAAGTT+CGG + Chr3:79861569-79861588 MsG0380016160.01.T01:CDS 40.0%
AACGGAGTTGTTAGGAGATT+TGG - Chr3:79862761-79862780 None:intergenic 40.0%
AATACCCATGTCTTTGTGGA+CGG - Chr3:79861606-79861625 None:intergenic 40.0%
ACATTATGACCAGAGCTTCT+TGG - Chr3:79864334-79864353 None:intergenic 40.0%
AGGAGTTAGGGATGTTTGTA+GGG - Chr3:79863207-79863226 None:intergenic 40.0%
AGGCAACGGTAGATAATTTG+TGG - Chr3:79863693-79863712 None:intergenic 40.0%
AGGCTATGATTCATGAGATG+TGG - Chr3:79862855-79862874 None:intergenic 40.0%
ATCCAATGAGAGTTCCTTTG+GGG - Chr3:79863304-79863323 None:intergenic 40.0%
ATTCATTGGGAATGTTGGAG+TGG - Chr3:79862320-79862339 None:intergenic 40.0%
CAAGTTTAAAGAGGATGGGA+AGG - Chr3:79863761-79863780 None:intergenic 40.0%
CACGTCATTTCCATAATCTC+CGG + Chr3:79863577-79863596 MsG0380016160.01.T01:intron 40.0%
CATTCAAGACGGAATTAAGG+AGG + Chr3:79863389-79863408 MsG0380016160.01.T01:intron 40.0%
CCACAAAGACATGGGTATTA+CGG + Chr3:79861607-79861626 MsG0380016160.01.T01:CDS 40.0%
CCCAACAACAACCTAAGTAT+AGG + Chr3:79864714-79864733 MsG0380016160.01.T01:intron 40.0%
CCCCACACAAATAGTATCAT+CGG + Chr3:79863714-79863733 MsG0380016160.01.T01:intron 40.0%
CCGATGATACTATTTGTGTG+GGG - Chr3:79863717-79863736 None:intergenic 40.0%
CTATGATTCATGAGATGTGG+AGG - Chr3:79862852-79862871 None:intergenic 40.0%
CTCTGTGTATCTACAGGTTT+CGG + Chr3:79864277-79864296 MsG0380016160.01.T01:intron 40.0%
CTTTGTTAACTTTGCCACCA+GGG + Chr3:79864615-79864634 MsG0380016160.01.T01:CDS 40.0%
GAAATTAATCTTCAGCCTGG+AGG + Chr3:79863633-79863652 MsG0380016160.01.T01:intron 40.0%
GAATCCAATGAGAGTTCCTT+TGG - Chr3:79863306-79863325 None:intergenic 40.0%
GAGGGGGAAGGAAAATTAAT+TGG - Chr3:79863274-79863293 None:intergenic 40.0%
GAGTTGTTAGGAGATTTGGA+CGG - Chr3:79862757-79862776 None:intergenic 40.0%
GATTATATACCTCCGATTGC+GGG + Chr3:79864376-79864395 MsG0380016160.01.T01:CDS 40.0%
GCCGATGATACTATTTGTGT+GGG - Chr3:79863718-79863737 None:intergenic 40.0%
GGAAAAGCTGAAGCAAATCA+GGG - Chr3:79864525-79864544 None:intergenic 40.0%
GTACAAACATACCCGTAAGA+GGG - Chr3:79861475-79861494 None:intergenic 40.0%
GTCTTGATCAACAGCAACAT+CGG - Chr3:79864572-79864591 None:intergenic 40.0%
GTGCATCTCAATCTCTTTCA+AGG - Chr3:79863788-79863807 None:intergenic 40.0%
TACAAACATACCCGTAAGAG+GGG - Chr3:79861474-79861493 None:intergenic 40.0%
TACCACTTGGGATCCTTTAT+TGG - Chr3:79863479-79863498 None:intergenic 40.0%
TAGGAGTTAGGGATGTTTGT+AGG - Chr3:79863208-79863227 None:intergenic 40.0%
TAGTTTGATGGGGATTGATG+TGG - Chr3:79863605-79863624 None:intergenic 40.0%
TCGCATTCAAGACGGAATTA+AGG + Chr3:79863386-79863405 MsG0380016160.01.T01:intron 40.0%
TGACTATAAACCCCCTCTTA+CGG + Chr3:79861460-79861479 MsG0380016160.01.T01:CDS 40.0%
TGATACTATTTGTGTGGGGA+AGG - Chr3:79863713-79863732 None:intergenic 40.0%
TGCCGATGATACTATTTGTG+TGG - Chr3:79863719-79863738 None:intergenic 40.0%
TGGAAAAGCTGAAGCAAATC+AGG - Chr3:79864526-79864545 None:intergenic 40.0%
TGTAAAGATGGGTGAGTTGT+TGG - Chr3:79863096-79863115 None:intergenic 40.0%
TGTAACTTGGGAAGAGATTG+TGG - Chr3:79862192-79862211 None:intergenic 40.0%
TTCCAATAAAGGATCCCAAG+TGG + Chr3:79863474-79863493 MsG0380016160.01.T01:intron 40.0%
TTCCGTCAAATTTGGAAGAC+CGG - Chr3:79862596-79862615 None:intergenic 40.0%
TTGTGGAAGAGATGACTACT+GGG + Chr3:79864428-79864447 MsG0380016160.01.T01:CDS 40.0%
TTTGAAAGGTAGGAACTTGG+CGG - Chr3:79864133-79864152 None:intergenic 40.0%
TTTGTGGAAGAGATGACTAC+TGG + Chr3:79864427-79864446 MsG0380016160.01.T01:CDS 40.0%
! ACCTTTCCTTTTCCTTTTGG+TGG - Chr3:79863843-79863862 None:intergenic 40.0%
! AGCACCTTTCCTTTTCCTTT+TGG - Chr3:79863846-79863865 None:intergenic 40.0%
! AGGTTTGTGTATGATTTGGG+AGG - Chr3:79862270-79862289 None:intergenic 40.0%
! CGACGTGTATGTTTTATGAG+TGG - Chr3:79862118-79862137 None:intergenic 40.0%
! CTTCAGCTTTTCCAGTCTTT+TGG + Chr3:79864532-79864551 MsG0380016160.01.T01:CDS 40.0%
! GCCTATACTTAGGTTGTTGT+TGG - Chr3:79864718-79864737 None:intergenic 40.0%
! GGAGAAGGACTTTATTTGTG+TGG - Chr3:79862798-79862817 None:intergenic 40.0%
! GTATGTTTTATGAGTGGAGC+TGG - Chr3:79862112-79862131 None:intergenic 40.0%
! TTTGGTAGATTGGGGCTTTT+TGG - Chr3:79864016-79864035 None:intergenic 40.0%
! TTTGTGTATGATTTGGGAGG+CGG - Chr3:79862267-79862286 None:intergenic 40.0%
!! AGATTGGTTTAATGAGGAGG+TGG - Chr3:79862989-79863008 None:intergenic 40.0%
!! ATTTGGTGGTGCTCTCTAAA+GGG - Chr3:79863025-79863044 None:intergenic 40.0%
!! GAGTGGGTTTTTGTGCTAAA+TGG - Chr3:79863978-79863997 None:intergenic 40.0%
!! GGTGGGTTTTTAATTGGAGA+AGG - Chr3:79862813-79862832 None:intergenic 40.0%
!! TAGTACAAGCTTTTGGAGAG+TGG - Chr3:79862944-79862963 None:intergenic 40.0%
!!! AATTCTTTTCAGGTGGTCGT+AGG + Chr3:79864475-79864494 MsG0380016160.01.T01:CDS 40.0%
!!! ATCTTTTTTGCCACACAAGC+CGG + Chr3:79863331-79863350 MsG0380016160.01.T01:intron 40.0%
!!! CTGTTTTTTGAGGAAGGTCT+GGG - Chr3:79861951-79861970 None:intergenic 40.0%
!!! TCTTTTGAGGCAGTTTTGCT+GGG - Chr3:79861927-79861946 None:intergenic 40.0%
!!! TGTTTTTTGAGGAAGGTCTG+GGG - Chr3:79861950-79861969 None:intergenic 40.0%
!!! TTGTGCAAGGCTGTTTTTTG+AGG - Chr3:79861961-79861980 None:intergenic 40.0%
AAACATACACGTCGGAGTTG+TGG + Chr3:79862124-79862143 MsG0380016160.01.T01:intron 45.0%
AAAGATGGGTGAGTTGTTGG+AGG - Chr3:79863093-79863112 None:intergenic 45.0%
AACTTGGGAAGAGATTGTGG+AGG - Chr3:79862189-79862208 None:intergenic 45.0%
AAGCAAACACAACACCTCCA+AGG + Chr3:79861833-79861852 MsG0380016160.01.T01:intron 45.0%
AAGTTGGAGGTCTAGGAGTT+AGG - Chr3:79863220-79863239 None:intergenic 45.0%
ACAAAAGCCTTCAGGTATGG+AGG - Chr3:79864412-79864431 None:intergenic 45.0%
ACAAACATACCCGTAAGAGG+GGG - Chr3:79861473-79861492 None:intergenic 45.0%
ACCCTGATCTCCTTAAGTTC+GGG + Chr3:79861570-79861589 MsG0380016160.01.T01:CDS 45.0%
ACCTTGAAGGCTTTGCTAAG+GGG - Chr3:79863670-79863689 None:intergenic 45.0%
AGATGTGGAGGCCAAATTCA+AGG - Chr3:79862840-79862859 None:intergenic 45.0%
AGATTCTTGGAGGTGGAAGT+TGG - Chr3:79862714-79862733 None:intergenic 45.0%
AGGAGATTTGGACGGTTTGT+GGG - Chr3:79862749-79862768 None:intergenic 45.0%
AGGAGGTGAAGGTTATGACT+TGG - Chr3:79862169-79862188 None:intergenic 45.0%
AGGTTGAAGATTCTTGGAGG+TGG - Chr3:79862721-79862740 None:intergenic 45.0%
AGTTGGAGGTCTAGGAGTTA+GGG - Chr3:79863219-79863238 None:intergenic 45.0%
ATGAAGGCTTATGTGTGTGG+AGG - Chr3:79863946-79863965 None:intergenic 45.0%
ATTGGGAATGTTGGAGTGGA+GGG - Chr3:79862316-79862335 None:intergenic 45.0%
CCGTAATACCCATGTCTTTG+TGG - Chr3:79861610-79861629 None:intergenic 45.0%
CCTTGTGAATGGAAGTCCAA+CGG - Chr3:79863911-79863930 None:intergenic 45.0%
CTAGACCAGAAAACAGCAAG+AGG + Chr3:79862047-79862066 MsG0380016160.01.T01:intron 45.0%
CTCCGGTCTTCCAAATTTGA+CGG + Chr3:79862591-79862610 MsG0380016160.01.T01:intron 45.0%
CTGAGGTTGAAGATTCTTGG+AGG - Chr3:79862724-79862743 None:intergenic 45.0%
CTTGTGAATGGAAGTCCAAC+GGG - Chr3:79863910-79863929 None:intergenic 45.0%
GACCTTGAAGGCTTTGCTAA+GGG - Chr3:79863671-79863690 None:intergenic 45.0%
GACTATAAACCCCCTCTTAC+GGG + Chr3:79861461-79861480 MsG0380016160.01.T01:CDS 45.0%
GCAACAAAGATGCCGCATAT+AGG + Chr3:79861750-79861769 MsG0380016160.01.T01:intron 45.0%
GCCACCAAAAGGAAAAGGAA+AGG + Chr3:79863839-79863858 MsG0380016160.01.T01:intron 45.0%
GGACTGAGGTTGAAGATTCT+TGG - Chr3:79862727-79862746 None:intergenic 45.0%
GGAGGTTGTTCCGTCAAATT+TGG - Chr3:79862604-79862623 None:intergenic 45.0%
GGCAAGCCCAAATACATGAA+CGG + Chr3:79863523-79863542 MsG0380016160.01.T01:intron 45.0%
GGTACAAACATACCCGCAAT+CGG - Chr3:79864391-79864410 None:intergenic 45.0%
GGTACAAACATACCCGTAAG+AGG - Chr3:79861476-79861495 None:intergenic 45.0%
GGTGATGTAACGCCTATATG+CGG - Chr3:79861765-79861784 None:intergenic 45.0%
GTGTATATGATGCGGAGAGT+GGG - Chr3:79863994-79864013 None:intergenic 45.0%
GTGTGTCAACCTAGAGAAGT+TGG - Chr3:79863236-79863255 None:intergenic 45.0%
GTTCATGTATTTGGGCTTGC+CGG - Chr3:79863524-79863543 None:intergenic 45.0%
GTTTGTACCTCCATACCTGA+AGG + Chr3:79864402-79864421 MsG0380016160.01.T01:CDS 45.0%
TAAAACCTTCGGCCACCAAA+AGG + Chr3:79863828-79863847 MsG0380016160.01.T01:intron 45.0%
TAGGAGATTTGGACGGTTTG+TGG - Chr3:79862750-79862769 None:intergenic 45.0%
TATGCCGTCCACAAAGACAT+GGG + Chr3:79861599-79861618 MsG0380016160.01.T01:CDS 45.0%
TATTTGTGTGGGGAAGGCAA+CGG - Chr3:79863707-79863726 None:intergenic 45.0%
TCCACAAAAGCCTTCAGGTA+TGG - Chr3:79864415-79864434 None:intergenic 45.0%
TCCTACATTGTGACTTCGCA+AGG - Chr3:79862421-79862440 None:intergenic 45.0%
TCCTTGCGAAGTCACAATGT+AGG + Chr3:79862417-79862436 MsG0380016160.01.T01:intron 45.0%
TCGAATGCAAACCACCATGA+GGG - Chr3:79861665-79861684 None:intergenic 45.0%
TCTCTTCCACAAAAGCCTTC+AGG - Chr3:79864420-79864439 None:intergenic 45.0%
TGAGTCTTCTTGCGAAATGG+AGG - Chr3:79863178-79863197 None:intergenic 45.0%
TGGAGGCCAAATTCAAGGAA+GGG - Chr3:79862835-79862854 None:intergenic 45.0%
TGGATGAAGGCTTATGTGTG+TGG - Chr3:79863949-79863968 None:intergenic 45.0%
TGTCAACCTAGAGAAGTTGG+AGG - Chr3:79863233-79863252 None:intergenic 45.0%
TTCGAAATTGGAAGGGAGAG+AGG - Chr3:79862657-79862676 None:intergenic 45.0%
TTGTGAATGGAAGTCCAACG+GGG - Chr3:79863909-79863928 None:intergenic 45.0%
! AGGTGAAGGTTATGACTTGG+AGG - Chr3:79862166-79862185 None:intergenic 45.0%
! ATTGGAAGGGAGAGAGGTTT+TGG - Chr3:79862651-79862670 None:intergenic 45.0%
! CCAAGGTGAGTGCTTTTGTT+TGG - Chr3:79862565-79862584 None:intergenic 45.0%
! CGTGCTATGGGGTTGAATTT+TGG - Chr3:79861894-79861913 None:intergenic 45.0%
! CTTTTTGTCATCGGATGACC+CGG - Chr3:79861519-79861538 None:intergenic 45.0%
! GCTATGGGGTTGAATTTTGG+TGG - Chr3:79861891-79861910 None:intergenic 45.0%
! GCTTTGTTAACTTTGCCACC+AGG + Chr3:79864614-79864633 MsG0380016160.01.T01:CDS 45.0%
! GTTGCTGTTGATCAAGACTC+TGG + Chr3:79864574-79864593 MsG0380016160.01.T01:CDS 45.0%
! TACTTAGGTTGTTGTTGGGG+AGG - Chr3:79864713-79864732 None:intergenic 45.0%
! TCCATACCTGAAGGCTTTTG+TGG + Chr3:79864411-79864430 MsG0380016160.01.T01:CDS 45.0%
! TGAAGGTTATGACTTGGAGG+TGG - Chr3:79862163-79862182 None:intergenic 45.0%
! TTGTGTATGATTTGGGAGGC+GGG - Chr3:79862266-79862285 None:intergenic 45.0%
! TTTGGGTGTTATCGAAAGCG+AGG - Chr3:79862241-79862260 None:intergenic 45.0%
!! ACAAAAGCACTCACCTTGGA+AGG + Chr3:79862566-79862585 MsG0380016160.01.T01:intron 45.0%
!! AGGAAAAGGAAAGGTGCTAG+AGG + Chr3:79863848-79863867 MsG0380016160.01.T01:intron 45.0%
!! ATCGAGGTGGTGGAAAGATT+TGG - Chr3:79863042-79863061 None:intergenic 45.0%
!! CCAAACAAAAGCACTCACCT+TGG + Chr3:79862562-79862581 MsG0380016160.01.T01:intron 45.0%
!! CTTTATAATGCCGGCTTGTG+TGG - Chr3:79863344-79863363 None:intergenic 45.0%
!! GATTTGGTGGTGCTCTCTAA+AGG - Chr3:79863026-79863045 None:intergenic 45.0%
!! GGAAGGGGTGGGTTTTTAAT+TGG - Chr3:79862819-79862838 None:intergenic 45.0%
!! GGCAGATTGGTTTAATGAGG+AGG - Chr3:79862992-79863011 None:intergenic 45.0%
!! GGTGAGTGCTTTTGTTTGGA+AGG - Chr3:79862561-79862580 None:intergenic 45.0%
!! TGGAGGACATTGTCGATTTG+TGG - Chr3:79863076-79863095 None:intergenic 45.0%
!! TTGCGTTTGTTGTGGGAAGT+TGG - Chr3:79862465-79862484 None:intergenic 45.0%
!!! CTTGCTGTTTTCTGGTCTAG+CGG - Chr3:79862047-79862066 None:intergenic 45.0%
!!! GCAAGGCTGTTTTTTGAGGA+AGG - Chr3:79861957-79861976 None:intergenic 45.0%
!!! GCTGTTTTTTGAGGAAGGTC+TGG - Chr3:79861952-79861971 None:intergenic 45.0%
!!! GTCTTTTGAGGCAGTTTTGC+TGG - Chr3:79861928-79861947 None:intergenic 45.0%
!! TCAAAAAATAAAAATAAAAT+TGG - Chr3:79861726-79861745 None:intergenic 5.0%
!!! TTTATTTTTATTTTTTGAAT+CGG + Chr3:79861728-79861747 MsG0380016160.01.T01:intron 5.0%
!!! TTTTTATTTTATTTTAGTTA+GGG + Chr3:79861143-79861162 MsG0380016160.01.T01:intron 5.0%
!!! TTTTTTATTTTATTTTAGTT+AGG + Chr3:79861142-79861161 MsG0380016160.01.T01:intron 5.0%
AAAGGTAGGAACTTGGCGGA+TGG - Chr3:79864129-79864148 None:intergenic 50.0%
ACAAACATACCCGCAATCGG+AGG - Chr3:79864388-79864407 None:intergenic 50.0%
ACAACACAGCAACAGCCAAC+AGG + Chr3:79861977-79861996 MsG0380016160.01.T01:intron 50.0%
ACCCACCCCTTCCTTGAATT+TGG + Chr3:79862826-79862845 MsG0380016160.01.T01:intron 50.0%
ACCCCTTAGCAAAGCCTTCA+AGG + Chr3:79863666-79863685 MsG0380016160.01.T01:intron 50.0%
AGAGATTGTGGAGGAGGTGA+AGG - Chr3:79862180-79862199 None:intergenic 50.0%
ATCTACAGGTTTCGGCAACG+AGG + Chr3:79864285-79864304 MsG0380016160.01.T01:intron 50.0%
ATGTATTTGGGCTTGCCGGT+GGG - Chr3:79863520-79863539 None:intergenic 50.0%
CAAACCACCATGAGGGATCA+CGG - Chr3:79861658-79861677 None:intergenic 50.0%
CACCCCAAAGGAACTCTCAT+TGG + Chr3:79863299-79863318 MsG0380016160.01.T01:intron 50.0%
CACGCGATGAGATTCGATCA+AGG + Chr3:79862531-79862550 MsG0380016160.01.T01:intron 50.0%
CAGGGTTCCTTGTCTCGTAT+GGG - Chr3:79864507-79864526 None:intergenic 50.0%
CATAGCTGTCCCCGAACTTA+AGG - Chr3:79861583-79861602 None:intergenic 50.0%
CATTGGGAATGTTGGAGTGG+AGG - Chr3:79862317-79862336 None:intergenic 50.0%
CCCCGAACTTAAGGAGATCA+GGG - Chr3:79861574-79861593 None:intergenic 50.0%
CCCTGATCTCCTTAAGTTCG+GGG + Chr3:79861571-79861590 MsG0380016160.01.T01:CDS 50.0%
CCGTTGGACTTCCATTCACA+AGG + Chr3:79863908-79863927 MsG0380016160.01.T01:intron 50.0%
CCTAGACCTCCAACTTCTCT+AGG + Chr3:79863224-79863243 MsG0380016160.01.T01:intron 50.0%
CCTAGAGAAGTTGGAGGTCT+AGG - Chr3:79863227-79863246 None:intergenic 50.0%
CTATGCCGTCCACAAAGACA+TGG + Chr3:79861598-79861617 MsG0380016160.01.T01:CDS 50.0%
CTTCGGCCACCAAAAGGAAA+AGG + Chr3:79863834-79863853 MsG0380016160.01.T01:intron 50.0%
GACCAGAAAACAGCAAGAGG+AGG + Chr3:79862050-79862069 MsG0380016160.01.T01:intron 50.0%
GAGATTGAGATGCACCGCAT+TGG + Chr3:79863793-79863812 MsG0380016160.01.T01:intron 50.0%
GATTTGGGAGGCGGGAATTT+GGG - Chr3:79862258-79862277 None:intergenic 50.0%
GCCAAATTCAAGGAAGGGGT+GGG - Chr3:79862830-79862849 None:intergenic 50.0%
GGACCTTGAAGGCTTTGCTA+AGG - Chr3:79863672-79863691 None:intergenic 50.0%
GGAGATTTGGACGGTTTGTG+GGG - Chr3:79862748-79862767 None:intergenic 50.0%
GGAGGCCAAATTCAAGGAAG+GGG - Chr3:79862834-79862853 None:intergenic 50.0%
GGTGTATATGATGCGGAGAG+TGG - Chr3:79863995-79864014 None:intergenic 50.0%
GTCGAATGCAAACCACCATG+AGG - Chr3:79861666-79861685 None:intergenic 50.0%
GTCTTCTTGCGAAATGGAGG+TGG - Chr3:79863175-79863194 None:intergenic 50.0%
GTGGAGGCCAAATTCAAGGA+AGG - Chr3:79862836-79862855 None:intergenic 50.0%
TATGTTTGTACCTCCCTGCC+TGG + Chr3:79861484-79861503 MsG0380016160.01.T01:CDS 50.0%
TCAACACTGTCTTCACACGG+TGG - Chr3:79861002-79861021 None:intergenic 50.0%
TCAGGGTTCCTTGTCTCGTA+TGG - Chr3:79864508-79864527 None:intergenic 50.0%
TCCCCGAACTTAAGGAGATC+AGG - Chr3:79861575-79861594 None:intergenic 50.0%
TTAACGCGCTAAGCAATCCG+TGG + Chr3:79862083-79862102 MsG0380016160.01.T01:intron 50.0%
TTCTTGCGAAATGGAGGTGG+AGG - Chr3:79863172-79863191 None:intergenic 50.0%
TTGGGAAGAGATTGTGGAGG+AGG - Chr3:79862186-79862205 None:intergenic 50.0%
! AAGGTAGGAACTTGGCGGAT+GGG - Chr3:79864128-79864147 None:intergenic 50.0%
! ACGGATTGCTTAGCGCGTTA+AGG - Chr3:79862084-79862103 None:intergenic 50.0%
! CAATGAGAGTTCCTTTGGGG+TGG - Chr3:79863301-79863320 None:intergenic 50.0%
! TGATTTGGGAGGCGGGAATT+TGG - Chr3:79862259-79862278 None:intergenic 50.0%
!! ACATTGTCGATTTGTGGCCG+AGG - Chr3:79863070-79863089 None:intergenic 50.0%
!! AGAGTTCCTTTGGGGTGGAA+TGG - Chr3:79863296-79863315 None:intergenic 50.0%
!! CAAGCTTTTGGAGAGTGGCA+TGG - Chr3:79862939-79862958 None:intergenic 50.0%
!! CTTTTCCTTTTGGTGGCCGA+AGG - Chr3:79863836-79863855 None:intergenic 50.0%
!! GAGGTGGTGGAAAGATTTGG+TGG - Chr3:79863039-79863058 None:intergenic 50.0%
!! GGGGGCAGATTGGTTTAATG+AGG - Chr3:79862995-79863014 None:intergenic 50.0%
!! GTTTTCTGGTCTAGCGGTAC+AGG - Chr3:79862041-79862060 None:intergenic 50.0%
!! TTCCTTTGGGGTGGAATGGA+GGG - Chr3:79863292-79863311 None:intergenic 50.0%
!! TTGGTGGCCGAAGGTTTTAG+TGG - Chr3:79863827-79863846 None:intergenic 50.0%
!! TTTTGGAGAGTGGCATGGAG+AGG - Chr3:79862934-79862953 None:intergenic 50.0%
!!! TGCCTCCTCTTGCTGTTTTC+TGG - Chr3:79862055-79862074 None:intergenic 50.0%
AACAACCTCCTCTCCCCTAC+CGG + Chr3:79862614-79862633 MsG0380016160.01.T01:intron 55.0%
ACTCACCTTGGAAGGAGCTC+CGG + Chr3:79862574-79862593 MsG0380016160.01.T01:intron 55.0%
AGCCATAGCTCAAGCCTTGG+AGG - Chr3:79861850-79861869 None:intergenic 55.0%
ATGACCCGGTAGTCATCTCC+AGG - Chr3:79861505-79861524 None:intergenic 55.0%
ATGAGTGGAGCTGGAGTCCA+CGG - Chr3:79862103-79862122 None:intergenic 55.0%
ATGTCCGTGATCCCTCATGG+TGG + Chr3:79861651-79861670 MsG0380016160.01.T01:CDS 55.0%
CACCACCTCGATGCATTCCT+CGG + Chr3:79863050-79863069 MsG0380016160.01.T01:intron 55.0%
CACCTCCAAGGCTTGAGCTA+TGG + Chr3:79861845-79861864 MsG0380016160.01.T01:intron 55.0%
CAGAGCCATAGCTCAAGCCT+TGG - Chr3:79861853-79861872 None:intergenic 55.0%
CATGACAGTCCAGCACCTGT+TGG - Chr3:79861995-79862014 None:intergenic 55.0%
CATGAGGGATCACGGACATG+AGG - Chr3:79861650-79861669 None:intergenic 55.0%
CATGTATTTGGGCTTGCCGG+TGG - Chr3:79863521-79863540 None:intergenic 55.0%
CTCATGTCCGTGATCCCTCA+TGG + Chr3:79861648-79861667 MsG0380016160.01.T01:CDS 55.0%
GACCAGAGCTTCTTGGACGA+GGG - Chr3:79864327-79864346 None:intergenic 55.0%
GCAACCTCCCATACGAGACA+AGG + Chr3:79864497-79864516 MsG0380016160.01.T01:CDS 55.0%
GGCCAAATTCAAGGAAGGGG+TGG - Chr3:79862831-79862850 None:intergenic 55.0%
GGCTGTTGCTGTGTTGTGCA+AGG - Chr3:79861974-79861993 None:intergenic 55.0%
GGTTCCTTGTCTCGTATGGG+AGG - Chr3:79864504-79864523 None:intergenic 55.0%
TGACCAGAGCTTCTTGGACG+AGG - Chr3:79864328-79864347 None:intergenic 55.0%
TTCCCTCGTCCAAGAAGCTC+TGG + Chr3:79864322-79864341 MsG0380016160.01.T01:CDS 55.0%
! AGGCAGTTTTGCTGGGCTGT+TGG - Chr3:79861920-79861939 None:intergenic 55.0%
! AGGTAGGAACTTGGCGGATG+GGG - Chr3:79864127-79864146 None:intergenic 55.0%
! CAGTTTTGCTGGGCTGTTGG+AGG - Chr3:79861917-79861936 None:intergenic 55.0%
! GTGGTGCTCTCTAAAGGGCA+GGG - Chr3:79863020-79863039 None:intergenic 55.0%
! TCTGGCTGTAGTGCCCGTTT+TGG + Chr3:79864592-79864611 MsG0380016160.01.T01:CDS 55.0%
! TGATGTGGCGCCGGAGATTA+TGG - Chr3:79863590-79863609 None:intergenic 55.0%
! TGGTGCTCTCTAAAGGGCAG+GGG - Chr3:79863019-79863038 None:intergenic 55.0%
!! GAACTTGGCGGATGGGGTTT+TGG - Chr3:79864121-79864140 None:intergenic 55.0%
!! GGAAGGGAGAGAGGTTTTGG+AGG - Chr3:79862648-79862667 None:intergenic 55.0%
!! GGAAGGTCTGGGGTCTTTTG+AGG - Chr3:79861940-79861959 None:intergenic 55.0%
!! GTTCCTTTGGGGTGGAATGG+AGG - Chr3:79863293-79863312 None:intergenic 55.0%
!! TCCTTTGGGGTGGAATGGAG+GGG - Chr3:79863291-79863310 None:intergenic 55.0%
!!! GGGGTTTTGAATTGGCCTCC+AGG - Chr3:79863651-79863670 None:intergenic 55.0%
!!! GGTTTTGGAGGTTACCCGTC+CGG - Chr3:79862636-79862655 None:intergenic 55.0%
ACTCTGAGCAGCTTCCCTGG+TGG - Chr3:79864632-79864651 None:intergenic 60.0%
AGCACTCTGAGCAGCTTCCC+TGG - Chr3:79864635-79864654 None:intergenic 60.0%
AGGAGGTGGTTCGTAGCGTG+GGG - Chr3:79862975-79862994 None:intergenic 60.0%
ATTTGGGCTTGCCGGTGGGT+GGG - Chr3:79863516-79863535 None:intergenic 60.0%
CAGCAACAGCCAACAGGTGC+TGG + Chr3:79861983-79862002 MsG0380016160.01.T01:intron 60.0%
CCCTGCCTGGAGATGACTAC+CGG + Chr3:79861497-79861516 MsG0380016160.01.T01:CDS 60.0%
CCGGTAGTCATCTCCAGGCA+GGG - Chr3:79861500-79861519 None:intergenic 60.0%
CCTGCCTGGAGATGACTACC+GGG + Chr3:79861498-79861517 MsG0380016160.01.T01:CDS 60.0%
CGAGGAATGCATCGAGGTGG+TGG - Chr3:79863052-79863071 None:intergenic 60.0%
GAAGACCGGAGCTCCTTCCA+AGG - Chr3:79862582-79862601 None:intergenic 60.0%
GAGGAGGTGGTTCGTAGCGT+GGG - Chr3:79862976-79862995 None:intergenic 60.0%
GATGGGGATTGATGTGGCGC+CGG - Chr3:79863599-79863618 None:intergenic 60.0%
GTAGTCATCTCCAGGCAGGG+AGG - Chr3:79861497-79861516 None:intergenic 60.0%
GTGGTTCGTAGCGTGGGGAA+TGG - Chr3:79862970-79862989 None:intergenic 60.0%
TAGCGGTACAGGCTGTCCAC+TGG - Chr3:79862030-79862049 None:intergenic 60.0%
TATTTGGGCTTGCCGGTGGG+TGG - Chr3:79863517-79863536 None:intergenic 60.0%
TCCCAAGTGGTAGCCCTAGC+CGG + Chr3:79863487-79863506 MsG0380016160.01.T01:intron 60.0%
TGAGGAGGTGGTTCGTAGCG+TGG - Chr3:79862977-79862996 None:intergenic 60.0%
TGGACGGTTTGTGGGGACTG+AGG - Chr3:79862741-79862760 None:intergenic 60.0%
TGGAGGTTACCCGTCCGGTA+GGG - Chr3:79862631-79862650 None:intergenic 60.0%
TGTGGCCGAGGAATGCATCG+AGG - Chr3:79863058-79863077 None:intergenic 60.0%
TTGGAGGTTACCCGTCCGGT+AGG - Chr3:79862632-79862651 None:intergenic 60.0%
! GCTGTTGGAGGCGTGCTATG+GGG - Chr3:79861905-79861924 None:intergenic 60.0%
! GGCTGTTGGAGGCGTGCTAT+GGG - Chr3:79861906-79861925 None:intergenic 60.0%
! GGTGGTGCTCTCTAAAGGGC+AGG - Chr3:79863021-79863040 None:intergenic 60.0%
! TGCTCTCTAAAGGGCAGGGG+CGG - Chr3:79863016-79863035 None:intergenic 60.0%
!! CCTTTGGGGTGGAATGGAGG+GGG - Chr3:79863290-79863309 None:intergenic 60.0%
ACCCGGCTAGGGCTACCACT+TGG - Chr3:79863492-79863511 None:intergenic 65.0%
ACCTCCTCTCCCCTACCGGA+CGG + Chr3:79862618-79862637 MsG0380016160.01.T01:intron 65.0%
CATGACAGCAGCGCTGCCAG+TGG + Chr3:79862011-79862030 MsG0380016160.01.T01:intron 65.0%
CCCAAGTGGTAGCCCTAGCC+GGG + Chr3:79863488-79863507 MsG0380016160.01.T01:intron 65.0%
CCCCCTCCATTCCACCCCAA+AGG + Chr3:79863287-79863306 MsG0380016160.01.T01:intron 65.0%
CCCGGCTAGGGCTACCACTT+GGG - Chr3:79863491-79863510 None:intergenic 65.0%
CCCGGTAGTCATCTCCAGGC+AGG - Chr3:79861501-79861520 None:intergenic 65.0%
GGAGGTTACCCGTCCGGTAG+GGG - Chr3:79862630-79862649 None:intergenic 65.0%
GGCCGAGGAATGCATCGAGG+TGG - Chr3:79863055-79863074 None:intergenic 65.0%
TGGGGTGGAATGGAGGGGGA+AGG - Chr3:79863286-79863305 None:intergenic 65.0%
TTACCCGTCCGGTAGGGGAG+AGG - Chr3:79862625-79862644 None:intergenic 65.0%
! CTCTCTAAAGGGCAGGGGCG+GGG - Chr3:79863014-79863033 None:intergenic 65.0%
! GCTCTCTAAAGGGCAGGGGC+GGG - Chr3:79863015-79863034 None:intergenic 65.0%
! GGGCTGTTGGAGGCGTGCTA+TGG - Chr3:79861907-79861926 None:intergenic 65.0%
! TCTCTAAAGGGCAGGGGCGG+GGG - Chr3:79863013-79863032 None:intergenic 65.0%
CCTCCTCTCCCCTACCGGAC+GGG + Chr3:79862619-79862638 MsG0380016160.01.T01:intron 70.0%
CTAGCCGGGTTCCCACCCAC+CGG + Chr3:79863502-79863521 MsG0380016160.01.T01:intron 70.0%
CTTGCCGGTGGGTGGGAACC+CGG - Chr3:79863509-79863528 None:intergenic 70.0%
GGTGGGTGGGAACCCGGCTA+GGG - Chr3:79863503-79863522 None:intergenic 70.0%
CCCGTCCGGTAGGGGAGAGG+AGG - Chr3:79862622-79862641 None:intergenic 75.0%
CGGTGGGTGGGAACCCGGCT+AGG - Chr3:79863504-79863523 None:intergenic 75.0%
! GGGCAGGGGCGGGGGCAGAT+TGG - Chr3:79863005-79863024 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr3 gene 79860909 79864890 79860909 ID=MsG0380016160.01;Name=MsG0380016160.01
Chr3 mRNA 79860909 79864890 79860909 ID=MsG0380016160.01.T01;Parent=MsG0380016160.01;Name=MsG0380016160.01.T01;_AED=0.37;_eAED=0.37;_QI=87|1|1|1|0|0.33|3|161|267
Chr3 exon 79860909 79861089 79860909 ID=MsG0380016160.01.T01:exon:10346;Parent=MsG0380016160.01.T01
Chr3 exon 79861414 79861686 79861414 ID=MsG0380016160.01.T01:exon:10347;Parent=MsG0380016160.01.T01
Chr3 five_prime_UTR 79860909 79860995 79860909 ID=MsG0380016160.01.T01:five_prime_utr;Parent=MsG0380016160.01.T01
Chr3 CDS 79860996 79861089 79860996 ID=MsG0380016160.01.T01:cds;Parent=MsG0380016160.01.T01
Chr3 CDS 79861414 79861686 79861414 ID=MsG0380016160.01.T01:cds;Parent=MsG0380016160.01.T01
Chr3 CDS 79864293 79864729 79864293 ID=MsG0380016160.01.T01:cds;Parent=MsG0380016160.01.T01
Chr3 three_prime_UTR 79864730 79864890 79864730 ID=MsG0380016160.01.T01:three_prime_utr;Parent=MsG0380016160.01.T01
Chr3 mRNA 79861274 79864890 79861274 ID=MsG0380016160.01.T02;Parent=MsG0380016160.01;Name=MsG0380016160.01.T02;_AED=0.38;_eAED=0.38;_QI=97|1|1|1|0|0.5|2|161|250
Chr3 exon 79861274 79861686 79861274 ID=MsG0380016160.01.T02:exon:10349;Parent=MsG0380016160.01.T02
Chr3 five_prime_UTR 79861274 79861370 79861274 ID=MsG0380016160.01.T02:five_prime_utr;Parent=MsG0380016160.01.T02
Chr3 CDS 79861371 79861686 79861371 ID=MsG0380016160.01.T02:cds;Parent=MsG0380016160.01.T02
Chr3 CDS 79864293 79864729 79864293 ID=MsG0380016160.01.T02:cds;Parent=MsG0380016160.01.T02
Chr3 three_prime_UTR 79864730 79864890 79864730 ID=MsG0380016160.01.T02:three_prime_utr;Parent=MsG0380016160.01.T02
Gene Sequence

>MsG0380016160.01.T02

ATGTCTATCAATCTAATTGTTACTCTCTCTGTTTGTGATACAGATGATGATGACGAAGACGACGACGACGTTTTTTATCAAAAGGATTTTGACTATAAACCCCCTCTTACGGGTATGTTTGTACCTCCCTGCCTGGAGATGACTACCGGGTCATCCGATGACAAAAAGAAGTCTGTTCTGGTAGGGGTTGACAAGAAGAACCCTGATCTCCTTAAGTTCGGGGACAGCTATGCCGTCCACAAAGACATGGGTATTACGGTCTCTTCTGAACTCAAACCTCATGTCCGTGATCCCTCATGGTGGTTTGCATTCGACAGTTTCGGCAACGAGGATGAGTTTGATGCATTCCCTCGTCCAAGAAGCTCTGGTCATAATGTTTATAGTCCACTTTTTCGTATTGATTATATACCTCCGATTGCGGGTATGTTTGTACCTCCATACCTGAAGGCTTTTGTGGAAGAGATGACTACTGGGTCATCCGATGACAACAACAAGAAGAATTCTTTTCAGGTGGTCGTAGGCAACCTCCCATACGAGACAAGGAACCCTGATTTGCTTCAGCTTTTCCAGTCTTTTGGTCATGTCATTAGTGCCGATGTTGCTGTTGATCAAGACTCTGGCTGTAGTGCCCGTTTTGGCTTTGTTAACTTTGCCACCAGGGAAGCTGCTCAGAGTGCTATTGAAAGAGTCAATGGGATTGACTACCACAATTTCGTACTTAGAGTTGAATGGTCCTCCCCAACAACAACCTAA

>MsG0380016160.01.T01

ATGCCACCGTGTGAAGACAGTGTTGATTTCAATTTAATCAACAAGTTTGAGGAAGACGTCTCTGAATCCAAACCTTCTGCTTTTGTTTTCTACAATGATGATGACGAAGACGACGACGACGTTTTTTATCAAAAGGATTTTGACTATAAACCCCCTCTTACGGGTATGTTTGTACCTCCCTGCCTGGAGATGACTACCGGGTCATCCGATGACAAAAAGAAGTCTGTTCTGGTAGGGGTTGACAAGAAGAACCCTGATCTCCTTAAGTTCGGGGACAGCTATGCCGTCCACAAAGACATGGGTATTACGGTCTCTTCTGAACTCAAACCTCATGTCCGTGATCCCTCATGGTGGTTTGCATTCGACAGTTTCGGCAACGAGGATGAGTTTGATGCATTCCCTCGTCCAAGAAGCTCTGGTCATAATGTTTATAGTCCACTTTTTCGTATTGATTATATACCTCCGATTGCGGGTATGTTTGTACCTCCATACCTGAAGGCTTTTGTGGAAGAGATGACTACTGGGTCATCCGATGACAACAACAAGAAGAATTCTTTTCAGGTGGTCGTAGGCAACCTCCCATACGAGACAAGGAACCCTGATTTGCTTCAGCTTTTCCAGTCTTTTGGTCATGTCATTAGTGCCGATGTTGCTGTTGATCAAGACTCTGGCTGTAGTGCCCGTTTTGGCTTTGTTAACTTTGCCACCAGGGAAGCTGCTCAGAGTGCTATTGAAAGAGTCAATGGGATTGACTACCACAATTTCGTACTTAGAGTTGAATGGTCCTCCCCAACAACAACCTAA
Protein sequence

>MsG0380016160.01.T02

MSINLIVTLSVCDTDDDDEDDDDVFYQKDFDYKPPLTGMFVPPCLEMTTGSSDDKKKSVLVGVDKKNPDLLKFGDSYAVHKDMGITVSSELKPHVRDPSWWFAFDSFGNEDEFDAFPRPRSSGHNVYSPLFRIDYIPPIAGMFVPPYLKAFVEEMTTGSSDDNNKKNSFQVVVGNLPYETRNPDLLQLFQSFGHVISADVAVDQDSGCSARFGFVNFATREAAQSAIERVNGIDYHNFVLRVEWSSPTTT*

>MsG0380016160.01.T01

MPPCEDSVDFNLINKFEEDVSESKPSAFVFYNDDDEDDDDVFYQKDFDYKPPLTGMFVPPCLEMTTGSSDDKKKSVLVGVDKKNPDLLKFGDSYAVHKDMGITVSSELKPHVRDPSWWFAFDSFGNEDEFDAFPRPRSSGHNVYSPLFRIDYIPPIAGMFVPPYLKAFVEEMTTGSSDDNNKKNSFQVVVGNLPYETRNPDLLQLFQSFGHVISADVAVDQDSGCSARFGFVNFATREAAQSAIERVNGIDYHNFVLRVEWSSPTTT*