AlfalfaGEDB | MsG0280007723.01

M. sativa cultivar ZhongmuNo.1 / MsG0280007723.01

KEGG: -
GO: GO:0005515
PFAM: PF01535 PF12854 PF13041

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007723.01.T01	XP_003594555.1	100	465	0	0	41	505	175	639	0	972
MsG0280007723.01.T01	XP_003594555.1	22.291	323	213	4	201	488	162	481	1.42E-12	82.8

Showing 1 to 2 of 2 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007723.01.T01	Q9ZU27	69.895	475	138	2	32	504	179	650	0	721

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007723.01.T01	G7IKX5	100.000	465	0	0	41	505	175	639	0.0	972

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000240.01	MsG0280007723.01	0.846211	2.503723e-59	4.277407e-56
MsG0180000470.01	MsG0280007723.01	-0.813240	2.828979e-51	1.837368e-48
MsG0180000544.01	MsG0280007723.01	0.809583	1.761525e-50	1.038280e-47
MsG0180001886.01	MsG0280007723.01	-0.804169	2.457260e-49	1.258240e-46
MsG0180002686.01	MsG0280007723.01	0.801444	8.978104e-49	4.288260e-46
MsG0180002973.01	MsG0280007723.01	-0.800469	1.420217e-48	6.617965e-46
MsG0180003309.01	MsG0280007723.01	0.818574	1.825840e-52	1.371799e-49
MsG0180003429.01	MsG0280007723.01	0.811628	6.365787e-51	3.960053e-48
MsG0180004152.01	MsG0280007723.01	-0.807182	5.727472e-50	3.168966e-47
MsG0180004451.01	MsG0280007723.01	0.844713	6.376273e-59	1.038324e-55

Showing 1 to 10 of 55 entries

Previous1 2 3 4 5 6Next

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0080048845.01	MsG0280007723.01	PPI
MsG0380012551.01	MsG0280007723.01	PPI
MsG0380015812.01	MsG0280007723.01	PPI
MsG0780036951.01	MsG0280007723.01	PPI
MsG0780036953.01	MsG0280007723.01	PPI

Showing 1 to 5 of 5 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007723.01.T01	MTR_2g030540	100.000	465	0	0	41	505	175	639	0.0	972
MsG0280007723.01.T01	MTR_2g030540	22.291	323	213	4	201	488	162	481	1.72e-16	82.8
MsG0280007723.01.T01	MTR_3g105900	30.000	450	306	4	45	489	261	706	1.54e-59	213
MsG0280007723.01.T01	MTR_3g105900	28.671	429	303	2	49	474	230	658	2.48e-57	206
MsG0280007723.01.T01	MTR_3g105900	28.641	412	289	3	80	488	192	601	4.13e-55	200
MsG0280007723.01.T01	MTR_3g105900	26.844	488	315	7	43	490	574	1059	2.49e-52	191
MsG0280007723.01.T01	MTR_3g105900	27.342	395	283	3	91	482	133	526	4.44e-45	170
MsG0280007723.01.T01	MTR_3g105900	28.941	387	236	5	95	477	766	1117	1.57e-44	169
MsG0280007723.01.T01	MTR_3g105900	29.477	363	218	2	91	450	798	1125	6.30e-43	164
MsG0280007723.01.T01	MTR_3g105900	26.221	389	254	2	95	482	731	1087	1.65e-37	147

Showing 1 to 10 of 1,677 entries

Previous1 2 3 4 5…168Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007723.01.T01	AT1G51965	70.105	475	140	1	32	504	179	653	0.0	730
MsG0280007723.01.T01	AT1G51965	22.108	389	227	5	162	477	136	521	4.80e-23	103
MsG0280007723.01.T01	AT1G63400	30.000	470	289	4	48	477	42	511	1.55e-63	217
MsG0280007723.01.T01	AT1G63400	26.667	435	316	2	42	473	143	577	1.96e-52	187
MsG0280007723.01.T01	AT1G63400	27.273	242	169	4	249	485	36	275	5.08e-23	103
MsG0280007723.01.T01	AT4G31850	29.274	468	293	4	45	474	179	646	6.81e-61	216
MsG0280007723.01.T01	AT4G31850	25.926	513	296	6	45	477	494	1002	6.30e-56	202
MsG0280007723.01.T01	AT4G31850	27.273	396	279	3	93	482	122	514	8.78e-45	169
MsG0280007723.01.T01	AT4G31850	26.722	479	301	8	45	477	564	1038	3.15e-41	159
MsG0280007723.01.T01	AT4G31850	27.049	366	233	3	44	407	775	1108	7.84e-40	154

Showing 1 to 10 of 1,893 entries

Previous1 2 3 4 5…190Next

Find 164 sgRNAs with CRISPR-Local

Find 786 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTGACATTCAACTTCC+AGG	0.406662	2:-19655989	MsG0280007723.01.T01:intron
AAATAGCCTATGTGCTTCAG+AGG	0.585158	2:+19648449	None:intergenic
AAATATAATGCCCACAGATT+AGG	0.317480	2:+19652580	None:intergenic
AACAGTTTGATCAACTGCCT+CGG	0.567426	2:-19648066	MsG0280007723.01.T01:CDS
AACTCAACTATAGAGACACA+CGG	0.706154	2:+19659229	None:intergenic
AACTTCTTGCTGGACTCTTG+TGG	0.503155	2:+19653624	None:intergenic
AAGAACCTTGGATGAGCTGG+AGG	0.590662	2:+19656341	None:intergenic
AAGATCTGGAAGAACTGCCG+AGG	0.678863	2:-19647833	MsG0280007723.01.T01:CDS
AATACAGTATTCACAGCTCT+TGG	0.524586	2:-19648276	MsG0280007723.01.T01:CDS
AATATAATGCCCACAGATTA+GGG	0.319380	2:+19652581	None:intergenic

Showing 1 to 10 of 164 entries

Previous1 2 3 4 5…17Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAATAGTAGATCATCG+TGG	+	Chr2:19653959-19653978	None:intergenic	30.0%
AAAAGACGGTTATAGATGAA+AGG	+	Chr2:19656182-19656201	None:intergenic	30.0%
AAAGACGGTTATAGATGAAA+GGG	+	Chr2:19656181-19656200	None:intergenic	30.0%
AAATATAATGCCCACAGATT+AGG	+	Chr2:19654357-19654376	None:intergenic	30.0%
AAATGAAACACAAGCATCAA+AGG	+	Chr2:19652181-19652200	None:intergenic	30.0%
AACCTAATTACAATGAATCG+CGG	+	Chr2:19657334-19657353	None:intergenic	30.0%
AACTATCCAATTCCTGAATA+AGG	+	Chr2:19654506-19654525	None:intergenic	30.0%
AAGTCTTTGACACAAAATCA+TGG	+	Chr2:19651015-19651034	None:intergenic	30.0%
AATATAATGCCCACAGATTA+GGG	+	Chr2:19654356-19654375	None:intergenic	30.0%
AATGAAACACAAGCATCAAA+GGG	+	Chr2:19652180-19652199	None:intergenic	30.0%

Showing 1 to 10 of 786 entries

Previous1 2 3 4 5…79Next

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	19647678	19659278	19647678	ID=MsG0280007723.01;Name=MsG0280007723.01
Chr2	mRNA	19647678	19659278	19647678	ID=MsG0280007723.01.T01;Parent=MsG0280007723.01;Name=MsG0280007723.01.T01;_AED=0.38;_eAED=0.39;_QI=798\|0.44\|0.4\|0.9\|0.55\|0.6\|10\|0\|505
Chr2	exon	19659141	19659278	19659141	ID=MsG0280007723.01.T01:exon:4681;Parent=MsG0280007723.01.T01
Chr2	exon	19658015	19658092	19658015	ID=MsG0280007723.01.T01:exon:4680;Parent=MsG0280007723.01.T01
Chr2	exon	19656347	19656442	19656347	ID=MsG0280007723.01.T01:exon:4679;Parent=MsG0280007723.01.T01
Chr2	exon	19656172	19656247	19656172	ID=MsG0280007723.01.T01:exon:4678;Parent=MsG0280007723.01.T01
Chr2	exon	19655990	19656085	19655990	ID=MsG0280007723.01.T01:exon:4677;Parent=MsG0280007723.01.T01
Chr2	exon	19653882	19654040	19653882	ID=MsG0280007723.01.T01:exon:4676;Parent=MsG0280007723.01.T01
Chr2	exon	19653582	19653684	19653582	ID=MsG0280007723.01.T01:exon:4675;Parent=MsG0280007723.01.T01
Chr2	exon	19652595	19652765	19652595	ID=MsG0280007723.01.T01:exon:4674;Parent=MsG0280007723.01.T01
Chr2	exon	19650424	19650616	19650424	ID=MsG0280007723.01.T01:exon:4673;Parent=MsG0280007723.01.T01
Chr2	exon	19647678	19648883	19647678	ID=MsG0280007723.01.T01:exon:4672;Parent=MsG0280007723.01.T01
Chr2	five_prime_UTR	19659141	19659278	19659141	ID=MsG0280007723.01.T01:five_prime_utr;Parent=MsG0280007723.01.T01
Chr2	five_prime_UTR	19658015	19658092	19658015	ID=MsG0280007723.01.T01:five_prime_utr;Parent=MsG0280007723.01.T01
Chr2	five_prime_UTR	19656347	19656442	19656347	ID=MsG0280007723.01.T01:five_prime_utr;Parent=MsG0280007723.01.T01
Chr2	five_prime_UTR	19656172	19656247	19656172	ID=MsG0280007723.01.T01:five_prime_utr;Parent=MsG0280007723.01.T01
Chr2	five_prime_UTR	19655990	19656085	19655990	ID=MsG0280007723.01.T01:five_prime_utr;Parent=MsG0280007723.01.T01
Chr2	five_prime_UTR	19653882	19654040	19653882	ID=MsG0280007723.01.T01:five_prime_utr;Parent=MsG0280007723.01.T01
Chr2	five_prime_UTR	19653582	19653684	19653582	ID=MsG0280007723.01.T01:five_prime_utr;Parent=MsG0280007723.01.T01
Chr2	five_prime_UTR	19652714	19652765	19652714	ID=MsG0280007723.01.T01:five_prime_utr;Parent=MsG0280007723.01.T01
Chr2	CDS	19652595	19652713	19652595	ID=MsG0280007723.01.T01:cds;Parent=MsG0280007723.01.T01
Chr2	CDS	19650424	19650616	19650424	ID=MsG0280007723.01.T01:cds;Parent=MsG0280007723.01.T01
Chr2	CDS	19647678	19648883	19647678	ID=MsG0280007723.01.T01:cds;Parent=MsG0280007723.01.T01

Gene Sequence

>MsG0280007723.01.T01

ATGTCAAACTTGATTAGGCATGGAAACAAATACCGATACAAATCTTTTTGTCAACCGGGGACGACCGGCGCTGCTGTTCAACCTTTGATTGGGGGGATTTTTTCTAGATGCCCTAATCTGTGTGTTGGGTTGGTTAAGAAATGGGGACTTAGGTTTAATGCTTATAGTTATAAGTGTTTGCTTCAAGGCTATTTGAGATTGAGGGATTGTGATAAAGCTTTTGGTGTTTATTTGGATATGTTGAGATGTGGTTATTCTTTGGATATTTTTGCTTTTAATATGCTTTTGGATGCTTTGGCTAAGGATCAAAAGGTAGATAAAGCATATAAAGTTTTTGAGGACATGAAGCGGAGGCATTGTGAGCCTGATACGTTCACATACACCATTATGATCAGAATGACTGGAAAAGCCGGCAAAACTGACGAGTCGCTAGCACTCTTTCAGGCAATGTTAGAAAAGGGCTTCACTCTAAATTTGATTGCTTATAATACTATGATTGAGGCACTTGCCAAGGGGCGGATGGCGGACAAGGCCGTCCTGCTCTTCTCAAAAATGGTTGAGAATGGTTGTCAGCCTAATGAATTTACGTACAGTGTGCTTTTGAATGTTTTGGTTGCTGAAGGACAGCTTAATAAGCTTGACAATATTGTGGAGATGTCAAAAAAATATATGAATAAGCAGATATATGCATATTTTGTAAGGACTTTAAGCAAATTGGGCCATTCCTCTGAAGCACATAGGCTATTTTGCAACATGTGGAACGTTCATGACAAGGGCGATAAAGATGCCTACATGTCCATGTTGGAGAGTCTATGCAGTAGTGGTAAAATCGCAGAAGCAATAGATCTTCTGAATAGATTTCACGAAAAGTGTATAACTACTGATACTATCATGTATAATACAGTATTCACAGCTCTTGGTAGGTTGAAACAAGTATCGCATATCCATGATCTTTACGAAAAGATGAAACAAGATGGCCCTCCACCAGACATATTCACATACAATATTCTGATCTCCAGCTATGGACGGGCTGGAAGAGTTGACAGTGCTGTTAAAATTTTCGAAGAGCTAGAGAATAGTAATTGTCAGCCCGATGTTATTTCCTATAACAGTTTGATCAACTGCCTCGGAAAGAATGGAGATGTTGATGAAGCTCACATGAGATTTAAAGAGATGCAAGAGAAAGGGTTAAATCCTGATGTTGTAACTTATAGTACACTTATTGAGTGTTTCGGCAAGACGGATAAAGTTGAGATGGCGTGTAGTTTATTCGATGAAATGATTGCCGAGGGATGCTCTCCTAACTTAGTAACATATAATATTTTACTCGACTGTCTTGAAAGATCTGGAAGAACTGCCGAGGCAGTGGACCTTTATGCAAAACTTAAGCAACAAGGACTGACGCCAGATTCAATAACATATGCAGTGCTTGAGCGATTGCAAAGCGGTAGGCACGGGAAGTTGAGAGTTCGCAGACAGAACCCAATTACAGGATGGGTTGTTAGCCCTTTACAATGA

Protein sequence

>MsG0280007723.01.T01

MSNLIRHGNKYRYKSFCQPGTTGAAVQPLIGGIFSRCPNLCVGLVKKWGLRFNAYSYKCLLQGYLRLRDCDKAFGVYLDMLRCGYSLDIFAFNMLLDALAKDQKVDKAYKVFEDMKRRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKGFTLNLIAYNTMIEALAKGRMADKAVLLFSKMVENGCQPNEFTYSVLLNVLVAEGQLNKLDNIVEMSKKYMNKQIYAYFVRTLSKLGHSSEAHRLFCNMWNVHDKGDKDAYMSMLESLCSSGKIAEAIDLLNRFHEKCITTDTIMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTDKVEMACSLFDEMIAEGCSPNLVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVLERLQSGRHGKLRVRRQNPITGWVVSPLQ*