Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016197.01.T01 | XP_003601783.3 | 97.644 | 382 | 8 | 1 | 1 | 382 | 1 | 381 | 0 | 770 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016197.01.T01 | Q9FYF9 | 70.262 | 343 | 87 | 5 | 34 | 375 | 38 | 366 | 3.20E-171 | 485 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016197.01.T01 | A0A396IXW5 | 97.644 | 382 | 8 | 1 | 1 | 382 | 1 | 381 | 0.0 | 770 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180002207.01 | MsG0380016197.01 | 0.803774 | 2.968975e-49 | 1.504910e-46 |
| MsG0380015486.01 | MsG0380016197.01 | 0.802491 | 5.471531e-49 | 2.683756e-46 |
| MsG0380016197.01 | MsG0380017329.01 | 0.804496 | 2.101094e-49 | 1.084898e-46 |
| MsG0380016197.01 | MsG0580025612.01 | 0.807533 | 4.826261e-50 | 2.694756e-47 |
| MsG0380016197.01 | MsG0580025827.01 | 0.800171 | 1.633312e-48 | 7.553611e-46 |
| MsG0380016197.01 | MsG0780039976.01 | 0.806735 | 7.120004e-50 | 3.894072e-47 |
| MsG0380016197.01 | MsG0780040681.01 | 0.812163 | 4.866978e-51 | 3.071739e-48 |
| MsG0380016197.01 | MsG0780041468.01 | 0.819954 | 8.852449e-53 | 6.911196e-50 |
| MsG0380016197.01 | MsG0880041861.01 | 0.811252 | 7.681939e-51 | 4.731912e-48 |
| MsG0380016197.01 | MsG0880041864.01 | 0.844927 | 5.580389e-59 | 9.149475e-56 |
| MsG0380016197.01 | MsG0880043298.01 | 0.805693 | 1.180393e-49 | 6.286249e-47 |
| MsG0380016197.01 | MsG0880045773.01 | 0.802190 | 6.310996e-49 | 3.071819e-46 |
| MsG0380016197.01 | MsG0880046699.01 | 0.836721 | 7.924219e-57 | 1.007159e-53 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016197.01.T01 | MTR_3g085330 | 97.808 | 365 | 7 | 1 | 18 | 382 | 1 | 364 | 0.0 | 736 |
| MsG0380016197.01.T01 | MTR_8g080640 | 69.919 | 369 | 90 | 3 | 1 | 358 | 1 | 359 | 0.0 | 526 |
| MsG0380016197.01.T01 | MTR_3g099300 | 62.018 | 337 | 113 | 3 | 26 | 360 | 2 | 325 | 3.45e-142 | 408 |
| MsG0380016197.01.T01 | MTR_2g045135 | 62.018 | 337 | 113 | 3 | 26 | 360 | 2 | 325 | 3.45e-142 | 408 |
| MsG0380016197.01.T01 | MTR_2g045140 | 58.621 | 319 | 114 | 4 | 26 | 339 | 2 | 307 | 2.00e-121 | 355 |
| MsG0380016197.01.T01 | MTR_3g099300 | 63.669 | 278 | 88 | 2 | 83 | 360 | 1 | 265 | 9.00e-120 | 349 |
| MsG0380016197.01.T01 | MTR_2g045140 | 59.615 | 260 | 89 | 3 | 83 | 339 | 1 | 247 | 2.70e-99 | 296 |
| MsG0380016197.01.T01 | MTR_2g045140 | 58.716 | 218 | 74 | 3 | 125 | 339 | 1 | 205 | 4.23e-76 | 236 |
| MsG0380016197.01.T01 | MTR_2g045140 | 56.345 | 197 | 70 | 3 | 146 | 339 | 1 | 184 | 3.53e-63 | 202 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016197.01.T01 | AT1G67340 | 70.262 | 343 | 87 | 5 | 34 | 375 | 38 | 366 | 3.26e-172 | 485 |
| MsG0380016197.01.T01 | AT5G50450 | 56.338 | 355 | 126 | 3 | 23 | 376 | 5 | 331 | 4.74e-136 | 392 |
Find 100 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGGTGCTGGTTCTGTTTC+TGG | 0.053970 | 3:+80291640 | MsG0380016197.01.T01:CDS |
| TGTCCTTTGCTGAGTGATTT+TGG | 0.190426 | 3:+80291670 | MsG0380016197.01.T01:CDS |
| GATATTCGAGGCGGGTTTCC+TGG | 0.252033 | 3:+80291751 | MsG0380016197.01.T01:CDS |
| ATGAGGTTATGTTCGAATTC+TGG | 0.259191 | 3:+80291781 | MsG0380016197.01.T01:CDS |
| AGGATAACACAAACCTCTTC+TGG | 0.297325 | 3:-80290677 | None:intergenic |
| GCTGGTTCTGTTTCTGGTTC+GGG | 0.299737 | 3:+80291646 | MsG0380016197.01.T01:CDS |
| TACCATTCCAAGAGTGTAAC+AGG | 0.304317 | 3:-80291121 | None:intergenic |
| TGCTGGTTCTGTTTCTGGTT+CGG | 0.313707 | 3:+80291645 | MsG0380016197.01.T01:CDS |
| TGGTTGTAACGTTCCGGTTC+AGG | 0.315466 | 3:+80291690 | MsG0380016197.01.T01:CDS |
| AAAGTACTACTATTGGTAAA+AGG | 0.362709 | 3:-80292202 | None:intergenic |
| TGTGCACGCGCTGCATTTCT+CGG | 0.363700 | 3:+80291409 | MsG0380016197.01.T01:CDS |
| CGCGCCGTCTTTGTATTCAT+TGG | 0.368841 | 3:+80291318 | MsG0380016197.01.T01:CDS |
| GCGCTTGTCAAGCGCTTGAT+TGG | 0.371030 | 3:+80291878 | MsG0380016197.01.T01:CDS |
| CTCAAACGCTGTGTTGATGC+TGG | 0.395843 | 3:+80291087 | MsG0380016197.01.T01:CDS |
| AACTCATGTTTCCTTGTCTC+AGG | 0.404750 | 3:-80291814 | None:intergenic |
| ACGGTAACGGAAGATTGTTT+TGG | 0.408205 | 3:+80292055 | MsG0380016197.01.T01:three_prime_UTR |
| ATTGAAGCCTGTTACACTCT+TGG | 0.412205 | 3:+80291114 | MsG0380016197.01.T01:CDS |
| AGGAAGCGGCGCGTCGTTGA+TGG | 0.424760 | 3:+80291273 | MsG0380016197.01.T01:CDS |
| TTTGATAGTTGAAGTGTTTG+AGG | 0.425616 | 3:-80290697 | None:intergenic |
| CATTGTTTACAAGACGGTTA+CGG | 0.429974 | 3:+80291460 | MsG0380016197.01.T01:CDS |
| AACAGATGCAAAAGACTAAA+CGG | 0.431674 | 3:+80290973 | MsG0380016197.01.T01:intron |
| CAACACAGCGTTTGAGAAAA+CGG | 0.444420 | 3:-80291080 | None:intergenic |
| GGTTTCCTGGACCGGGTATG+AGG | 0.445338 | 3:+80291764 | MsG0380016197.01.T01:CDS |
| ACATGAGTTTCGAAGATGTT+CGG | 0.448702 | 3:+80291828 | MsG0380016197.01.T01:CDS |
| GAGGAGGAGGAACATGTTGC+CGG | 0.452656 | 3:+80291946 | MsG0380016197.01.T01:CDS |
| GCTGACGTGGAGTGTTAACC+CGG | 0.456764 | 3:+80291585 | MsG0380016197.01.T01:CDS |
| GCCAGTGGAGAGGTGGTTAG+AGG | 0.457892 | 3:+80291927 | MsG0380016197.01.T01:CDS |
| GTTATTGCCGTTAGATAAAA+CGG | 0.459886 | 3:-80291548 | None:intergenic |
| CCCATCATAAACCGGTTCGC+TGG | 0.462026 | 3:-80291721 | None:intergenic |
| GCTGGGTGAGTCTCCTGAAC+CGG | 0.464172 | 3:-80291703 | None:intergenic |
| TTGGCAGTGATTCAGTTCAA+TGG | 0.465205 | 3:+80291337 | MsG0380016197.01.T01:CDS |
| GGAGAGGTGGTTAGAGGAGG+AGG | 0.467062 | 3:+80291933 | MsG0380016197.01.T01:CDS |
| GGTTGTGCTTGATAGCTGAT+AGG | 0.470550 | 3:+80292002 | MsG0380016197.01.T01:exon |
| CCCAGCGAACCGGTTTATGA+TGG | 0.473236 | 3:+80291720 | MsG0380016197.01.T01:CDS |
| TTTCGAAGATGTTCGGTTTG+TGG | 0.474837 | 3:+80291835 | MsG0380016197.01.T01:CDS |
| AGGAGACTCACCCAGCGAAC+CGG | 0.480282 | 3:+80291710 | MsG0380016197.01.T01:CDS |
| ATAGAGAGAACTATATCATC+AGG | 0.482596 | 3:-80290799 | None:intergenic |
| TCCTCTAACCACCTCTCCAC+TGG | 0.483960 | 3:-80291928 | None:intergenic |
| TCGAGGCGGGTTTCCTGGAC+CGG | 0.486003 | 3:+80291756 | MsG0380016197.01.T01:CDS |
| GATATAGTTCTCTCTATACT+TGG | 0.489280 | 3:+80290805 | MsG0380016197.01.T01:CDS |
| AACACCACCGTCACCTTCAC+CGG | 0.490736 | 3:-80291965 | None:intergenic |
| GTGATTCAGTTCAATGGAAG+TGG | 0.496025 | 3:+80291343 | MsG0380016197.01.T01:CDS |
| CAAGGCGGAGTGTGCGCCAG+TGG | 0.498772 | 3:+80291912 | MsG0380016197.01.T01:CDS |
| CCAGCGAACCGGTTTATGAT+GGG | 0.509332 | 3:+80291721 | MsG0380016197.01.T01:CDS |
| CGAACCACCCCATCATAAAC+CGG | 0.517520 | 3:-80291729 | None:intergenic |
| TGAGGTGGTTGGTTTGAACC+CGG | 0.521097 | 3:-80291604 | None:intergenic |
| ATTATTATGCGAACCAGAAG+AGG | 0.526910 | 3:+80290664 | MsG0380016197.01.T01:exon |
| ACAAACAACCGTTGCTGACG+TGG | 0.529455 | 3:+80291572 | MsG0380016197.01.T01:CDS |
| GTTCGAATTCTGGTTGTGGA+AGG | 0.530016 | 3:+80291791 | MsG0380016197.01.T01:CDS |
| AATGTTAACGGTGACGGTAA+CGG | 0.530413 | 3:+80292042 | MsG0380016197.01.T01:three_prime_UTR |
| TGATTGGAAGTTTCGACACA+AGG | 0.534148 | 3:+80291894 | MsG0380016197.01.T01:CDS |
| CCATCATAAACCGGTTCGCT+GGG | 0.538212 | 3:-80291720 | None:intergenic |
| TTTCAAAATGTTAACGGTGA+CGG | 0.543665 | 3:+80292036 | MsG0380016197.01.T01:three_prime_UTR |
| AGAGGAGACCACACTACCAT+TGG | 0.543834 | 3:-80292176 | None:intergenic |
| TTATGTTCGAATTCTGGTTG+TGG | 0.545212 | 3:+80291787 | MsG0380016197.01.T01:CDS |
| TATTGTCTCATTTATTACTG+TGG | 0.546729 | 3:+80292129 | MsG0380016197.01.T01:three_prime_UTR |
| GAGGAACATGTTGCCGGTGA+AGG | 0.549146 | 3:+80291952 | MsG0380016197.01.T01:CDS |
| AAAATCTGAAGGAGAATTTG+CGG | 0.550795 | 3:-80290842 | None:intergenic |
| CATAACCTCATACCCGGTCC+AGG | 0.560065 | 3:-80291769 | None:intergenic |
| GCATTTCTCGGTCACATCGA+CGG | 0.562721 | 3:+80291421 | MsG0380016197.01.T01:CDS |
| TGTTTGCAAAACAGAGGAAG+CGG | 0.562893 | 3:+80291259 | MsG0380016197.01.T01:CDS |
| CGAGGCGGGTTTCCTGGACC+GGG | 0.564242 | 3:+80291757 | MsG0380016197.01.T01:CDS |
| ATGGGGTGGTTCGATATTCG+AGG | 0.569412 | 3:+80291739 | MsG0380016197.01.T01:CDS |
| GTTAAACAGAACGTTATTGA+AGG | 0.570072 | 3:+80291484 | MsG0380016197.01.T01:CDS |
| CGGAGTGTGCGCCAGTGGAG+AGG | 0.575589 | 3:+80291917 | MsG0380016197.01.T01:CDS |
| ATCGACGGTTTACGTGAGCT+TGG | 0.585324 | 3:+80291436 | MsG0380016197.01.T01:CDS |
| GAGGTGGTTGGTTTGAACCC+GGG | 0.585702 | 3:-80291603 | None:intergenic |
| AGTGTGCGCCAGTGGAGAGG+TGG | 0.586560 | 3:+80291920 | MsG0380016197.01.T01:CDS |
| AATGCAATTGCAAAGTCCAA+TGG | 0.595187 | 3:+80292160 | MsG0380016197.01.T01:three_prime_UTR |
| AAACACGAAGCTGAGGTGGT+TGG | 0.595586 | 3:-80291615 | None:intergenic |
| CTTGGTCATTGTTTACAAGA+CGG | 0.596462 | 3:+80291454 | MsG0380016197.01.T01:CDS |
| AGCCTGTTACACTCTTGGAA+TGG | 0.601007 | 3:+80291119 | MsG0380016197.01.T01:CDS |
| AGAACACTGATAAAATCTGA+AGG | 0.607669 | 3:-80290853 | None:intergenic |
| CAAAGACTTACGCGCCGGTG+TGG | 0.610989 | 3:+80291381 | MsG0380016197.01.T01:CDS |
| TGCAAAGTCCAATGGTAGTG+TGG | 0.612273 | 3:+80292168 | MsG0380016197.01.T01:three_prime_UTR |
| ATTCAGTTCAATGGAAGTGG+AGG | 0.623225 | 3:+80291346 | MsG0380016197.01.T01:CDS |
| TGGCATTGGATACTGAAACA+TGG | 0.624235 | 3:+80292090 | MsG0380016197.01.T01:three_prime_UTR |
| GCTAAAACACGAAGCTGAGG+TGG | 0.627721 | 3:-80291619 | None:intergenic |
| CGAACCGGTTTATGATGGGG+TGG | 0.628937 | 3:+80291725 | MsG0380016197.01.T01:CDS |
| TTAACACTCCACGTCAGCAA+CGG | 0.629849 | 3:-80291580 | None:intergenic |
| AGAACGTTATTGAAGGTCGA+CGG | 0.630802 | 3:+80291491 | MsG0380016197.01.T01:CDS |
| GTTGTGGAAGGCCTGAGACA+AGG | 0.631392 | 3:+80291803 | MsG0380016197.01.T01:CDS |
| AGTGGAGAGGTGGTTAGAGG+AGG | 0.634916 | 3:+80291930 | MsG0380016197.01.T01:CDS |
| CAACCAAAATCACTCAGCAA+AGG | 0.637304 | 3:-80291673 | None:intergenic |
| CATGTTGCCGGTGAAGGTGA+CGG | 0.641096 | 3:+80291958 | MsG0380016197.01.T01:CDS |
| GGTGGTTCGATATTCGAGGC+GGG | 0.643025 | 3:+80291743 | MsG0380016197.01.T01:CDS |
| CCAGCTAAAACACGAAGCTG+AGG | 0.643105 | 3:-80291622 | None:intergenic |
| TTCGAACATAACCTCATACC+CGG | 0.646462 | 3:-80291775 | None:intergenic |
| GCGTGCACATAAAGCCACAC+CGG | 0.649753 | 3:-80291395 | None:intergenic |
| AACGACAAAGACTTACGCGC+CGG | 0.652915 | 3:+80291376 | MsG0380016197.01.T01:CDS |
| CAGCGAACCGGTTTATGATG+GGG | 0.653162 | 3:+80291722 | MsG0380016197.01.T01:CDS |
| ATCTGAAGGAGAATTTGCGG+TGG | 0.661673 | 3:-80290839 | None:intergenic |
| TGGTGTTAACATTGATGAGG+TGG | 0.662483 | 3:+80291981 | MsG0380016197.01.T01:CDS |
| CTGACGTGGAGTGTTAACCC+GGG | 0.664204 | 3:+80291586 | MsG0380016197.01.T01:CDS |
| ACTATTGGTAAAAGGAACAG+AGG | 0.675720 | 3:-80292194 | None:intergenic |
| GGGTGGTTCGATATTCGAGG+CGG | 0.680012 | 3:+80291742 | MsG0380016197.01.T01:CDS |
| CGGTGGTGTTAACATTGATG+AGG | 0.680359 | 3:+80291978 | MsG0380016197.01.T01:CDS |
| ACTGCCAATGAATACAAAGA+CGG | 0.680538 | 3:-80291322 | None:intergenic |
| TTGGAAGTTTCGACACAAGG+CGG | 0.683789 | 3:+80291897 | MsG0380016197.01.T01:CDS |
| GTTGCCGGTGAAGGTGACGG+TGG | 0.699219 | 3:+80291961 | MsG0380016197.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTTCAAAATGTTAA+CGG | + | Chr3:80292030-80292049 | MsG0380016197.01.T01:three_prime_UTR | 10.0% |
| !!! | AAAATTTCTAATTTTTTGAG+TGG | - | Chr3:80291148-80291167 | None:intergenic | 15.0% |
| ! | TATTGTCTCATTTATTACTG+TGG | + | Chr3:80292129-80292148 | MsG0380016197.01.T01:three_prime_UTR | 25.0% |
| !!! | TGTTTTGGAACTGTATTTTT+TGG | + | Chr3:80292070-80292089 | MsG0380016197.01.T01:three_prime_UTR | 25.0% |
| AAAATCTGAAGGAGAATTTG+CGG | - | Chr3:80290845-80290864 | None:intergenic | 30.0% | |
| AACAGATGCAAAAGACTAAA+CGG | + | Chr3:80290973-80290992 | MsG0380016197.01.T01:intron | 30.0% | |
| AGAACACTGATAAAATCTGA+AGG | - | Chr3:80290856-80290875 | None:intergenic | 30.0% | |
| ATAGAGAGAACTATATCATC+AGG | - | Chr3:80290802-80290821 | None:intergenic | 30.0% | |
| GATATAGTTCTCTCTATACT+TGG | + | Chr3:80290805-80290824 | MsG0380016197.01.T01:CDS | 30.0% | |
| GTTAAACAGAACGTTATTGA+AGG | + | Chr3:80291484-80291503 | MsG0380016197.01.T01:CDS | 30.0% | |
| GTTATTGCCGTTAGATAAAA+CGG | - | Chr3:80291551-80291570 | None:intergenic | 30.0% | |
| TATCAGTCAAACCTAAAAAC+TGG | + | Chr3:80291043-80291062 | MsG0380016197.01.T01:CDS | 30.0% | |
| TTTCAAAATGTTAACGGTGA+CGG | + | Chr3:80292036-80292055 | MsG0380016197.01.T01:three_prime_UTR | 30.0% | |
| ! | TTTGATAGTTGAAGTGTTTG+AGG | - | Chr3:80290700-80290719 | None:intergenic | 30.0% |
| ! | TTTTACTGTTTGCAAAACAG+AGG | + | Chr3:80291253-80291272 | MsG0380016197.01.T01:CDS | 30.0% |
| !! | TAATGTTTTGTTCGAAGCTT+TGG | - | Chr3:80291025-80291044 | None:intergenic | 30.0% |
| !!! | AAATCATGAGAAGTGTTTTG+TGG | - | Chr3:80290766-80290785 | None:intergenic | 30.0% |
| AATGCAATTGCAAAGTCCAA+TGG | + | Chr3:80292160-80292179 | MsG0380016197.01.T01:three_prime_UTR | 35.0% | |
| ACATGAGTTTCGAAGATGTT+CGG | + | Chr3:80291828-80291847 | MsG0380016197.01.T01:CDS | 35.0% | |
| ACTGCCAATGAATACAAAGA+CGG | - | Chr3:80291325-80291344 | None:intergenic | 35.0% | |
| ATGAGGTTATGTTCGAATTC+TGG | + | Chr3:80291781-80291800 | MsG0380016197.01.T01:CDS | 35.0% | |
| ATTATTATGCGAACCAGAAG+AGG | + | Chr3:80290664-80290683 | MsG0380016197.01.T01:exon | 35.0% | |
| CATTGTTTACAAGACGGTTA+CGG | + | Chr3:80291460-80291479 | MsG0380016197.01.T01:CDS | 35.0% | |
| CTTGGTCATTGTTTACAAGA+CGG | + | Chr3:80291454-80291473 | MsG0380016197.01.T01:CDS | 35.0% | |
| ! | TTATGTTCGAATTCTGGTTG+TGG | + | Chr3:80291787-80291806 | MsG0380016197.01.T01:CDS | 35.0% |
| !!! | GGAACTGTATTTTTTGGCAT+TGG | + | Chr3:80292076-80292095 | MsG0380016197.01.T01:three_prime_UTR | 35.0% |
| !!! | TGATTTTGGTTGTAACGTTC+CGG | + | Chr3:80291684-80291703 | MsG0380016197.01.T01:CDS | 35.0% |
| AACTCATGTTTCCTTGTCTC+AGG | - | Chr3:80291817-80291836 | None:intergenic | 40.0% | |
| AGAACGTTATTGAAGGTCGA+CGG | + | Chr3:80291491-80291510 | MsG0380016197.01.T01:CDS | 40.0% | |
| AGGATAACACAAACCTCTTC+TGG | - | Chr3:80290680-80290699 | None:intergenic | 40.0% | |
| ATTCAGTTCAATGGAAGTGG+AGG | + | Chr3:80291346-80291365 | MsG0380016197.01.T01:CDS | 40.0% | |
| ATTGAAGCCTGTTACACTCT+TGG | + | Chr3:80291114-80291133 | MsG0380016197.01.T01:CDS | 40.0% | |
| CAACACAGCGTTTGAGAAAA+CGG | - | Chr3:80291083-80291102 | None:intergenic | 40.0% | |
| CAACCAAAATCACTCAGCAA+AGG | - | Chr3:80291676-80291695 | None:intergenic | 40.0% | |
| GTGATTCAGTTCAATGGAAG+TGG | + | Chr3:80291343-80291362 | MsG0380016197.01.T01:CDS | 40.0% | |
| TGATTGGAAGTTTCGACACA+AGG | + | Chr3:80291894-80291913 | MsG0380016197.01.T01:CDS | 40.0% | |
| TGTTTGCAAAACAGAGGAAG+CGG | + | Chr3:80291259-80291278 | MsG0380016197.01.T01:CDS | 40.0% | |
| TTCGAACATAACCTCATACC+CGG | - | Chr3:80291778-80291797 | None:intergenic | 40.0% | |
| TTGGCAGTGATTCAGTTCAA+TGG | + | Chr3:80291337-80291356 | MsG0380016197.01.T01:CDS | 40.0% | |
| ! | AATGTTAACGGTGACGGTAA+CGG | + | Chr3:80292042-80292061 | MsG0380016197.01.T01:three_prime_UTR | 40.0% |
| ! | TACCATTCCAAGAGTGTAAC+AGG | - | Chr3:80291124-80291143 | None:intergenic | 40.0% |
| ! | TGGCATTGGATACTGAAACA+TGG | + | Chr3:80292090-80292109 | MsG0380016197.01.T01:three_prime_UTR | 40.0% |
| ! | TGGTGTTAACATTGATGAGG+TGG | + | Chr3:80291981-80292000 | MsG0380016197.01.T01:CDS | 40.0% |
| ! | TGTCCTTTGCTGAGTGATTT+TGG | + | Chr3:80291670-80291689 | MsG0380016197.01.T01:CDS | 40.0% |
| ! | TTTCGAAGATGTTCGGTTTG+TGG | + | Chr3:80291835-80291854 | MsG0380016197.01.T01:CDS | 40.0% |
| !!! | ACGGTAACGGAAGATTGTTT+TGG | + | Chr3:80292055-80292074 | MsG0380016197.01.T01:three_prime_UTR | 40.0% |
| AGCCTGTTACACTCTTGGAA+TGG | + | Chr3:80291119-80291138 | MsG0380016197.01.T01:CDS | 45.0% | |
| ATCTGAAGGAGAATTTGCGG+TGG | - | Chr3:80290842-80290861 | None:intergenic | 45.0% | |
| TTAACACTCCACGTCAGCAA+CGG | - | Chr3:80291583-80291602 | None:intergenic | 45.0% | |
| TTGGAAGTTTCGACACAAGG+CGG | + | Chr3:80291897-80291916 | MsG0380016197.01.T01:CDS | 45.0% | |
| TTGTCGTGTGTCTGCAGATT+CGG | + | Chr3:80291230-80291249 | MsG0380016197.01.T01:intron | 45.0% | |
| ! | CGGTGGTGTTAACATTGATG+AGG | + | Chr3:80291978-80291997 | MsG0380016197.01.T01:CDS | 45.0% |
| ! | GCAGAGTCACACCAGTTTTT+AGG | - | Chr3:80291057-80291076 | None:intergenic | 45.0% |
| ! | GGTTGTGCTTGATAGCTGAT+AGG | + | Chr3:80292002-80292021 | MsG0380016197.01.T01:exon | 45.0% |
| ! | GTTCGAATTCTGGTTGTGGA+AGG | + | Chr3:80291791-80291810 | MsG0380016197.01.T01:CDS | 45.0% |
| ! | TGCAAAGTCCAATGGTAGTG+TGG | + | Chr3:80292168-80292187 | MsG0380016197.01.T01:three_prime_UTR | 45.0% |
| !! | TGCTGGTTCTGTTTCTGGTT+CGG | + | Chr3:80291645-80291664 | MsG0380016197.01.T01:CDS | 45.0% |
| !!! | CTCGCTGCCGTTTTATCTAA+CGG | + | Chr3:80291541-80291560 | MsG0380016197.01.T01:CDS | 45.0% |
| AAACACGAAGCTGAGGTGGT+TGG | - | Chr3:80291618-80291637 | None:intergenic | 50.0% | |
| AACGACAAAGACTTACGCGC+CGG | + | Chr3:80291376-80291395 | MsG0380016197.01.T01:CDS | 50.0% | |
| ACAAACAACCGTTGCTGACG+TGG | + | Chr3:80291572-80291591 | MsG0380016197.01.T01:CDS | 50.0% | |
| AGAGGAGACCACACTACCAT+TGG | - | Chr3:80292179-80292198 | None:intergenic | 50.0% | |
| ATCGACGGTTTACGTGAGCT+TGG | + | Chr3:80291436-80291455 | MsG0380016197.01.T01:CDS | 50.0% | |
| ATGGGGTGGTTCGATATTCG+AGG | + | Chr3:80291739-80291758 | MsG0380016197.01.T01:CDS | 50.0% | |
| CCAGCTAAAACACGAAGCTG+AGG | - | Chr3:80291625-80291644 | None:intergenic | 50.0% | |
| CGAACCACCCCATCATAAAC+CGG | - | Chr3:80291732-80291751 | None:intergenic | 50.0% | |
| CGCGCCGTCTTTGTATTCAT+TGG | + | Chr3:80291318-80291337 | MsG0380016197.01.T01:CDS | 50.0% | |
| GCATTTCTCGGTCACATCGA+CGG | + | Chr3:80291421-80291440 | MsG0380016197.01.T01:CDS | 50.0% | |
| GCTAAAACACGAAGCTGAGG+TGG | - | Chr3:80291622-80291641 | None:intergenic | 50.0% | |
| TGGTTGTAACGTTCCGGTTC+AGG | + | Chr3:80291690-80291709 | MsG0380016197.01.T01:CDS | 50.0% | |
| ! | CAGCGAACCGGTTTATGATG+GGG | + | Chr3:80291722-80291741 | MsG0380016197.01.T01:CDS | 50.0% |
| ! | CCAGCGAACCGGTTTATGAT+GGG | + | Chr3:80291721-80291740 | MsG0380016197.01.T01:CDS | 50.0% |
| ! | CTCAAACGCTGTGTTGATGC+TGG | + | Chr3:80291087-80291106 | MsG0380016197.01.T01:CDS | 50.0% |
| !! | CCATCATAAACCGGTTCGCT+GGG | - | Chr3:80291723-80291742 | None:intergenic | 50.0% |
| !! | GCTGGTTCTGTTTCTGGTTC+GGG | + | Chr3:80291646-80291665 | MsG0380016197.01.T01:CDS | 50.0% |
| !! | TGAGGTGGTTGGTTTGAACC+CGG | - | Chr3:80291607-80291626 | None:intergenic | 50.0% |
| !!! | CCTCAGCTTCGTGTTTTAGC+TGG | + | Chr3:80291622-80291641 | MsG0380016197.01.T01:CDS | 50.0% |
| !!! | CTTCGTGTTTTAGCTGGTGC+TGG | + | Chr3:80291628-80291647 | MsG0380016197.01.T01:CDS | 50.0% |
| AACACCACCGTCACCTTCAC+CGG | - | Chr3:80291968-80291987 | None:intergenic | 55.0% | |
| AGTGGAGAGGTGGTTAGAGG+AGG | + | Chr3:80291930-80291949 | MsG0380016197.01.T01:CDS | 55.0% | |
| CATAACCTCATACCCGGTCC+AGG | - | Chr3:80291772-80291791 | None:intergenic | 55.0% | |
| CATGTTGCCGGTGAAGGTGA+CGG | + | Chr3:80291958-80291977 | MsG0380016197.01.T01:CDS | 55.0% | |
| GAGGAACATGTTGCCGGTGA+AGG | + | Chr3:80291952-80291971 | MsG0380016197.01.T01:CDS | 55.0% | |
| GAGGAGGAGGAACATGTTGC+CGG | + | Chr3:80291946-80291965 | MsG0380016197.01.T01:CDS | 55.0% | |
| GCGCTTGTCAAGCGCTTGAT+TGG | + | Chr3:80291878-80291897 | MsG0380016197.01.T01:CDS | 55.0% | |
| GCGTGCACATAAAGCCACAC+CGG | - | Chr3:80291398-80291417 | None:intergenic | 55.0% | |
| GGGTGGTTCGATATTCGAGG+CGG | + | Chr3:80291742-80291761 | MsG0380016197.01.T01:CDS | 55.0% | |
| GGTGGTTCGATATTCGAGGC+GGG | + | Chr3:80291743-80291762 | MsG0380016197.01.T01:CDS | 55.0% | |
| GTTGTGGAAGGCCTGAGACA+AGG | + | Chr3:80291803-80291822 | MsG0380016197.01.T01:CDS | 55.0% | |
| TCCTCTAACCACCTCTCCAC+TGG | - | Chr3:80291931-80291950 | None:intergenic | 55.0% | |
| TGTGCACGCGCTGCATTTCT+CGG | + | Chr3:80291409-80291428 | MsG0380016197.01.T01:CDS | 55.0% | |
| ! | CCCAGCGAACCGGTTTATGA+TGG | + | Chr3:80291720-80291739 | MsG0380016197.01.T01:CDS | 55.0% |
| ! | CGAACCGGTTTATGATGGGG+TGG | + | Chr3:80291725-80291744 | MsG0380016197.01.T01:CDS | 55.0% |
| ! | CTGACGTGGAGTGTTAACCC+GGG | + | Chr3:80291586-80291605 | MsG0380016197.01.T01:CDS | 55.0% |
| ! | GATATTCGAGGCGGGTTTCC+TGG | + | Chr3:80291751-80291770 | MsG0380016197.01.T01:CDS | 55.0% |
| ! | GCTGACGTGGAGTGTTAACC+CGG | + | Chr3:80291585-80291604 | MsG0380016197.01.T01:CDS | 55.0% |
| !! | CCCATCATAAACCGGTTCGC+TGG | - | Chr3:80291724-80291743 | None:intergenic | 55.0% |
| !! | GAGGTGGTTGGTTTGAACCC+GGG | - | Chr3:80291606-80291625 | None:intergenic | 55.0% |
| !! | GCTGGTGCTGGTTCTGTTTC+TGG | + | Chr3:80291640-80291659 | MsG0380016197.01.T01:CDS | 55.0% |
| AGGAGACTCACCCAGCGAAC+CGG | + | Chr3:80291710-80291729 | MsG0380016197.01.T01:CDS | 60.0% | |
| GCCAGTGGAGAGGTGGTTAG+AGG | + | Chr3:80291927-80291946 | MsG0380016197.01.T01:CDS | 60.0% | |
| GCTGGGTGAGTCTCCTGAAC+CGG | - | Chr3:80291706-80291725 | None:intergenic | 60.0% | |
| GGAGAGGTGGTTAGAGGAGG+AGG | + | Chr3:80291933-80291952 | MsG0380016197.01.T01:CDS | 60.0% | |
| GGTTTCCTGGACCGGGTATG+AGG | + | Chr3:80291764-80291783 | MsG0380016197.01.T01:CDS | 60.0% | |
| ! | CAAAGACTTACGCGCCGGTG+TGG | + | Chr3:80291381-80291400 | MsG0380016197.01.T01:CDS | 60.0% |
| AGGAAGCGGCGCGTCGTTGA+TGG | + | Chr3:80291273-80291292 | MsG0380016197.01.T01:CDS | 65.0% | |
| AGTGTGCGCCAGTGGAGAGG+TGG | + | Chr3:80291920-80291939 | MsG0380016197.01.T01:CDS | 65.0% | |
| ! | GTTGCCGGTGAAGGTGACGG+TGG | + | Chr3:80291961-80291980 | MsG0380016197.01.T01:CDS | 65.0% |
| ! | TCGAGGCGGGTTTCCTGGAC+CGG | + | Chr3:80291756-80291775 | MsG0380016197.01.T01:CDS | 65.0% |
| CAAGGCGGAGTGTGCGCCAG+TGG | + | Chr3:80291912-80291931 | MsG0380016197.01.T01:CDS | 70.0% | |
| CGGAGTGTGCGCCAGTGGAG+AGG | + | Chr3:80291917-80291936 | MsG0380016197.01.T01:CDS | 70.0% | |
| ! | CGAGGCGGGTTTCCTGGACC+GGG | + | Chr3:80291757-80291776 | MsG0380016197.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 80290659 | 80292209 | 80290659 | ID=MsG0380016197.01;Name=MsG0380016197.01 |
| Chr3 | mRNA | 80290659 | 80292209 | 80290659 | ID=MsG0380016197.01.T01;Parent=MsG0380016197.01;Name=MsG0380016197.01.T01;_AED=0.49;_eAED=0.49;_QI=11|1|1|1|1|1|3|189|382 |
| Chr3 | exon | 80290659 | 80290881 | 80290659 | ID=MsG0380016197.01.T01:exon:11391;Parent=MsG0380016197.01.T01 |
| Chr3 | exon | 80290978 | 80291140 | 80290978 | ID=MsG0380016197.01.T01:exon:11392;Parent=MsG0380016197.01.T01 |
| Chr3 | exon | 80291247 | 80292209 | 80291247 | ID=MsG0380016197.01.T01:exon:11393;Parent=MsG0380016197.01.T01 |
| Chr3 | five_prime_UTR | 80290659 | 80290669 | 80290659 | ID=MsG0380016197.01.T01:five_prime_utr;Parent=MsG0380016197.01.T01 |
| Chr3 | CDS | 80290670 | 80290881 | 80290670 | ID=MsG0380016197.01.T01:cds;Parent=MsG0380016197.01.T01 |
| Chr3 | CDS | 80290978 | 80291140 | 80290978 | ID=MsG0380016197.01.T01:cds;Parent=MsG0380016197.01.T01 |
| Chr3 | CDS | 80291247 | 80292020 | 80291247 | ID=MsG0380016197.01.T01:cds;Parent=MsG0380016197.01.T01 |
| Chr3 | three_prime_UTR | 80292021 | 80292209 | 80292021 | ID=MsG0380016197.01.T01:three_prime_utr;Parent=MsG0380016197.01.T01 |
| Gene Sequence |
| Protein sequence |
