AlfalfaGEDB | MsG0580025612.01

M. sativa cultivar ZhongmuNo.1 / MsG0580025612.01

KEGG: -
GO: GO:0003677 GO:0006355
PFAM: PF02701

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025612.01.T01	XP_003612994.1	91.931	347	14	5	1	344	1	336	0	567

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025612.01.T01	Q9LSL6	43.252	326	141	17	33	344	21	316	8.37E-65	210

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025612.01.T01	G7KGJ7	91.931	347	14	5	1	344	1	336	0.0	567

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048400.01	MsG0580025612.01	0.813643	2.306766e-51	1.514854e-48
MsG0080048660.01	MsG0580025612.01	0.883920	2.980465e-71	1.926689e-67
MsG0080048849.01	MsG0580025612.01	0.805165	1.522998e-49	8.001141e-47
MsG0180000241.01	MsG0580025612.01	0.845117	4.960072e-59	8.180637e-56
MsG0180000627.01	MsG0580025612.01	0.811281	7.573438e-51	4.668397e-48
MsG0180000784.01	MsG0580025612.01	0.823923	1.066490e-53	9.309782e-51
MsG0180000785.01	MsG0580025612.01	0.808300	3.313639e-50	1.887834e-47
MsG0180001088.01	MsG0580025612.01	0.816664	4.920320e-52	3.508158e-49
MsG0180003951.01	MsG0580025612.01	0.801399	9.171552e-49	4.375536e-46
MsG0180004246.01	MsG0580025612.01	0.817878	2.624164e-52	1.934272e-49
MsG0180004765.01	MsG0580025612.01	0.816879	4.403804e-52	3.158478e-49
MsG0180005248.01	MsG0580025612.01	-0.803781	2.959249e-49	1.500255e-46
MsG0180005730.01	MsG0580025612.01	0.800355	1.498266e-48	6.961862e-46
MsG0180006054.01	MsG0580025612.01	0.823579	1.283590e-53	1.109647e-50
MsG0180006179.01	MsG0580025612.01	0.804449	2.148424e-49	1.108043e-46
MsG0280010736.01	MsG0580025612.01	0.853386	2.473190e-61	5.334581e-58
MsG0280010916.01	MsG0580025612.01	0.826504	2.616194e-54	2.458063e-51
MsG0280011248.01	MsG0580025612.01	0.804574	2.023956e-49	1.047202e-46
MsG0280011255.01	MsG0580025612.01	0.812540	4.026433e-51	2.567147e-48
MsG0280011404.01	MsG0580025612.01	0.807176	5.744165e-50	3.177691e-47
MsG0380014103.01	MsG0580025612.01	0.823260	1.524312e-53	1.305875e-50
MsG0380014221.01	MsG0580025612.01	0.802305	5.974349e-49	2.916841e-46
MsG0380014277.01	MsG0580025612.01	0.800741	1.250077e-48	5.865558e-46
MsG0480018584.01	MsG0580025612.01	0.810643	1.041152e-50	6.310304e-48
MsG0480018653.01	MsG0580025612.01	0.829170	5.981026e-55	6.073632e-52
MsG0480018883.01	MsG0580025612.01	0.808400	3.155086e-50	1.802289e-47
MsG0480019711.01	MsG0580025612.01	0.832353	9.924605e-56	1.106457e-52
MsG0480020765.01	MsG0580025612.01	0.834931	2.252479e-56	2.712897e-53
MsG0480020832.01	MsG0580025612.01	0.817003	4.130282e-52	2.972451e-49
MsG0480021060.01	MsG0580025612.01	0.810812	9.570999e-51	5.827065e-48
MsG0480021676.01	MsG0580025612.01	0.803505	3.375680e-49	1.699355e-46
MsG0480021796.01	MsG0580025612.01	0.804430	2.168795e-49	1.117959e-46
MsG0480022359.01	MsG0580025612.01	0.800243	1.579338e-48	7.317447e-46
MsG0480022920.01	MsG0580025612.01	0.800580	1.348475e-48	6.301503e-46
MsG0480023045.01	MsG0580025612.01	0.812669	3.773988e-51	2.414224e-48
MsG0480023251.01	MsG0580025612.01	0.807345	5.289646e-50	2.939126e-47
MsG0480023488.01	MsG0580025612.01	0.810660	1.031990e-50	6.257817e-48
MsG0480023489.01	MsG0580025612.01	0.833547	5.008508e-56	5.786943e-53
MsG0480023601.01	MsG0580025612.01	0.816948	4.250868e-52	3.054636e-49
MsG0480023723.01	MsG0580025612.01	0.805074	1.590771e-49	8.337797e-47
MsG0480023878.01	MsG0580025612.01	0.812506	4.096943e-51	2.609679e-48
MsG0580024790.01	MsG0580025612.01	-0.834420	3.029276e-56	3.593125e-53
MsG0580024952.01	MsG0580025612.01	0.818663	1.742507e-52	1.312402e-49
MsG0580024997.01	MsG0580025612.01	0.818505	1.892979e-52	1.419583e-49
MsG0580025332.01	MsG0580025612.01	0.830020	3.713884e-55	3.865830e-52
MsG0580025407.01	MsG0580025612.01	-0.845373	4.229745e-59	7.033994e-56
MsG0580025612.01	MsG0580025827.01	0.816449	5.498373e-52	3.896936e-49
MsG0580025612.01	MsG0580025832.01	0.818124	2.308305e-52	1.712956e-49
MsG0580025612.01	MsG0580025843.01	0.803714	3.056107e-49	1.546630e-46
MsG0580025612.01	MsG0580025987.01	0.829908	3.954929e-55	4.103955e-52
MsG0580025612.01	MsG0580026131.01	0.809214	2.113341e-50	1.233454e-47
MsG0580025612.01	MsG0580026159.01	-0.821375	4.175033e-53	3.390588e-50
MsG0580025612.01	MsG0580028428.01	0.855525	5.950341e-62	1.377710e-58
MsG0580025612.01	MsG0580028563.01	0.820245	7.596096e-53	5.978221e-50
MsG0580025612.01	MsG0580029236.01	0.809339	1.986840e-50	1.163480e-47
MsG0580025612.01	MsG0580029376.01	0.802057	6.719323e-49	3.259705e-46
MsG0580025612.01	MsG0580029736.01	0.805287	1.436033e-49	7.567824e-47
MsG0580025612.01	MsG0580029925.01	0.809038	2.305339e-50	1.339125e-47
MsG0580025612.01	MsG0580030000.01	0.815276	1.004248e-51	6.893132e-49
MsG0580025612.01	MsG0680030599.01	0.809355	1.971165e-50	1.154844e-47
MsG0580025612.01	MsG0680030880.01	0.820929	5.289083e-53	4.242697e-50
MsG0580025612.01	MsG0680031108.01	0.800859	1.182797e-48	5.566752e-46
MsG0580025612.01	MsG0680031263.01	0.803462	3.445897e-49	1.732743e-46
MsG0580025612.01	MsG0680031264.01	0.816453	5.488352e-52	3.890244e-49
MsG0580025612.01	MsG0680031344.01	0.840498	8.386694e-58	1.196898e-54
MsG0580025612.01	MsG0680031621.01	0.817519	3.162322e-52	2.308127e-49
MsG0580025612.01	MsG0680031702.01	0.833696	4.596787e-56	5.334505e-53
MsG0580025612.01	MsG0680031708.01	0.821626	3.653503e-53	2.987918e-50
MsG0580025612.01	MsG0680032771.01	0.812189	4.804472e-51	3.034400e-48
MsG0580025612.01	MsG0680034230.01	0.816644	4.972033e-52	3.542971e-49
MsG0580025612.01	MsG0680034985.01	0.812899	3.361664e-51	2.163485e-48
MsG0580025612.01	MsG0680035580.01	0.819157	1.345854e-52	1.027579e-49
MsG0580025612.01	MsG0680035707.01	0.833271	5.871150e-56	6.727404e-53
MsG0580025612.01	MsG0680035708.01	0.820211	7.732636e-53	6.080042e-50
MsG0580025612.01	MsG0780035960.01	0.802375	5.780767e-49	2.827300e-46
MsG0580025612.01	MsG0780036517.01	0.821171	4.653219e-53	3.757678e-50
MsG0580025612.01	MsG0780036593.01	0.868577	5.886156e-66	2.140106e-62
MsG0580025612.01	MsG0780036595.01	0.859253	4.700111e-63	1.233331e-59
MsG0580025612.01	MsG0780036596.01	0.853054	3.077985e-61	6.564827e-58
MsG0580025612.01	MsG0780036602.01	0.822042	2.926701e-53	2.421974e-50
MsG0580025612.01	MsG0780036757.01	0.813786	2.145463e-51	1.414356e-48
MsG0580025612.01	MsG0780037341.01	0.830882	2.286842e-55	2.441061e-52
MsG0580025612.01	MsG0780037395.01	0.829578	4.758667e-55	4.890222e-52
MsG0580025612.01	MsG0780037808.01	0.840053	1.096239e-57	1.543182e-54
MsG0580025612.01	MsG0780038377.01	0.832681	8.228436e-56	9.264014e-53
MsG0580025612.01	MsG0780038378.01	0.805796	1.122714e-49	5.994825e-47
MsG0580025612.01	MsG0780039432.01	0.800402	1.465882e-48	6.819378e-46
MsG0580025612.01	MsG0780039940.01	0.828815	7.287443e-55	7.323017e-52
MsG0580025612.01	MsG0780039976.01	0.800483	1.410878e-48	6.576946e-46
MsG0580025612.01	MsG0780040278.01	0.805838	1.100007e-49	5.879999e-47
MsG0580025612.01	MsG0780040888.01	0.839180	1.849106e-57	2.533287e-54
MsG0580025612.01	MsG0780041074.01	0.848655	5.335659e-60	9.860968e-57
MsG0580025612.01	MsG0780041262.01	0.824170	9.329462e-54	8.200959e-51
MsG0580025612.01	MsG0780041468.01	0.815602	8.500843e-52	5.887610e-49
MsG0580025612.01	MsG0880041861.01	0.892975	9.664174e-75	9.034863e-71
MsG0580025612.01	MsG0880041862.01	0.814231	1.712095e-51	1.142348e-48
MsG0580025612.01	MsG0880041863.01	0.841867	3.661282e-58	5.452347e-55
MsG0580025612.01	MsG0880041864.01	0.889267	2.823075e-73	2.261639e-69
MsG0580025612.01	MsG0880043037.01	0.827256	1.730208e-54	1.661587e-51
MsG0580025612.01	MsG0880043157.01	0.867296	1.519921e-65	5.279805e-62
MsG0580025612.01	MsG0880043298.01	0.807789	4.257304e-50	2.393027e-47
MsG0580025612.01	MsG0880043521.01	0.811463	6.913491e-51	4.282389e-48
MsG0580025612.01	MsG0880043937.01	0.822002	2.989699e-53	2.471406e-50
MsG0580025612.01	MsG0880043941.01	0.800972	1.121572e-48	5.293809e-46
MsG0580025612.01	MsG0880044043.01	0.825924	3.594530e-54	3.322249e-51
MsG0580025612.01	MsG0880044209.01	0.818186	2.235666e-52	1.661889e-49
MsG0580025612.01	MsG0880044379.01	0.810322	1.221113e-50	7.337989e-48
MsG0580025612.01	MsG0880045668.01	0.818038	2.414942e-52	1.787771e-49
MsG0580025612.01	MsG0880045765.01	0.806210	9.189361e-50	4.959012e-47
MsG0580025612.01	MsG0880045953.01	0.820126	8.086237e-53	6.343889e-50
MsG0580025612.01	MsG0880045992.01	0.820247	7.587950e-53	5.972183e-50
MsG0580025612.01	MsG0880046334.01	-0.803192	3.919005e-49	1.957050e-46
MsG0580025612.01	MsG0880046699.01	0.831034	2.097577e-55	2.249072e-52
MsG0580025612.01	MsG0880046815.01	0.809048	2.293565e-50	1.332662e-47
MsG0580025612.01	MsG0880047045.01	0.810740	9.916129e-51	6.025925e-48
MsG0580025612.01	MsG0880047394.01	0.839640	1.404305e-57	1.951304e-54
MsG0580025612.01	MsG0880047538.01	0.854789	9.739055e-62	2.200768e-58
MsG0580025612.01	MsG0880047657.01	0.838316	3.091607e-57	4.125113e-54
MsG0580025612.01	MsG0880047758.01	0.816826	4.527621e-52	3.242353e-49
MsG0380015277.01	MsG0580025612.01	0.808892	2.477451e-50	1.433421e-47
MsG0380015486.01	MsG0580025612.01	0.821085	4.871087e-53	3.924390e-50
MsG0380015716.01	MsG0580025612.01	0.831657	1.474481e-55	1.610507e-52
MsG0380015847.01	MsG0580025612.01	-0.808715	2.703135e-50	1.556684e-47
MsG0380015885.01	MsG0580025612.01	0.825654	4.166054e-54	3.820815e-51
MsG0380015891.01	MsG0580025612.01	0.820427	6.897828e-53	5.456507e-50
MsG0380016163.01	MsG0580025612.01	0.824040	1.001244e-53	8.768016e-51
MsG0380016197.01	MsG0580025612.01	0.807533	4.826261e-50	2.694756e-47
MsG0380016285.01	MsG0580025612.01	0.805486	1.304574e-49	6.910326e-47
MsG0380016864.01	MsG0580025612.01	0.807798	4.239451e-50	2.383516e-47
MsG0380017176.01	MsG0580025612.01	0.833365	5.560475e-56	6.389902e-53
MsG0380017202.01	MsG0580025612.01	0.839183	1.844911e-57	2.527902e-54
MsG0380017244.01	MsG0580025612.01	0.825588	4.318456e-54	3.953068e-51
MsG0380017293.01	MsG0580025612.01	0.835883	1.294433e-56	1.604167e-53
MsG0380017931.01	MsG0580025612.01	0.821585	3.734309e-53	3.050418e-50
MsG0480018236.01	MsG0580025612.01	0.840525	8.249427e-58	1.178309e-54
MsG0280006592.01	MsG0580025612.01	0.819152	1.349239e-52	1.030022e-49
MsG0280006601.01	MsG0580025612.01	0.817900	2.594070e-52	1.913183e-49
MsG0280006744.01	MsG0580025612.01	0.811690	6.170315e-51	3.844800e-48
MsG0280007432.01	MsG0580025612.01	0.852104	5.746816e-61	1.188187e-57
MsG0280007955.01	MsG0580025612.01	0.847834	8.997376e-60	1.619485e-56
MsG0280009507.01	MsG0580025612.01	0.814673	1.366597e-51	9.228073e-49
MsG0280010349.01	MsG0580025612.01	0.804164	2.463565e-49	1.261301e-46
MsG0280010350.01	MsG0580025612.01	0.813290	2.759240e-51	1.794608e-48
MsG0280010366.01	MsG0580025612.01	0.801818	7.524077e-49	3.627988e-46
MsG0280010517.01	MsG0580025612.01	0.805647	1.206846e-49	6.419204e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025612.01.T01	MTR_5g031440	91.931	347	14	5	1	344	1	336	0.0	567
MsG0580025612.01.T01	MTR_8g068210	46.594	367	132	13	11	344	3	338	3.79e-80	248
MsG0580025612.01.T01	MTR_8g479350	69.880	83	25	0	43	125	65	147	3.87e-37	136
MsG0580025612.01.T01	MTR_2g096740	60.000	100	40	0	41	140	57	156	4.09e-37	135
MsG0580025612.01.T01	MTR_2g096740	60.000	100	40	0	41	140	72	171	5.92e-37	135
MsG0580025612.01.T01	MTR_4g063780	64.894	94	24	2	41	125	70	163	6.76e-36	133
MsG0580025612.01.T01	MTR_8g027295	44.379	169	74	6	42	194	20	184	1.35e-33	125
MsG0580025612.01.T01	MTR_4g088580	68.000	75	24	0	47	121	56	130	2.66e-32	124
MsG0580025612.01.T01	MTR_7g059400	57.895	114	34	3	43	147	73	181	8.16e-32	122
MsG0580025612.01.T01	MTR_2g093220	83.051	59	10	0	42	100	36	94	1.27e-31	120
MsG0580025612.01.T01	MTR_4g022370	79.661	59	12	0	42	100	78	136	1.42e-31	122
MsG0580025612.01.T01	MTR_4g461080	81.667	60	10	1	40	98	22	81	8.61e-31	118
MsG0580025612.01.T01	MTR_7g024670	80.000	60	12	0	47	106	78	137	1.23e-30	119
MsG0580025612.01.T01	MTR_3g090430	64.706	85	26	2	30	110	34	118	6.44e-30	117
MsG0580025612.01.T01	MTR_2g014060	68.919	74	20	1	24	97	6	76	1.55e-29	116
MsG0580025612.01.T01	MTR_8g015840	70.588	68	19	1	41	108	15	81	1.58e-29	113
MsG0580025612.01.T01	MTR_3g091820	58.889	90	25	1	23	100	8	97	1.63e-29	115
MsG0580025612.01.T01	MTR_4g109980	88.235	51	6	0	46	96	40	90	2.71e-29	115
MsG0580025612.01.T01	MTR_3g077750	71.212	66	18	1	32	96	46	111	6.66e-29	114
MsG0580025612.01.T01	MTR_8g079060	71.667	60	17	0	41	100	24	83	1.69e-28	110
MsG0580025612.01.T01	MTR_1g056810	84.906	53	8	0	48	100	14	66	1.95e-28	112
MsG0580025612.01.T01	MTR_1g077600	71.875	64	15	1	40	100	34	97	8.33e-28	110
MsG0580025612.01.T01	MTR_1g077600	71.875	64	15	1	40	100	34	97	9.54e-28	110
MsG0580025612.01.T01	MTR_2g014170	83.673	49	8	0	46	94	45	93	1.15e-26	107
MsG0580025612.01.T01	MTR_2g059540	83.673	49	8	0	46	94	31	79	1.35e-26	105
MsG0580025612.01.T01	MTR_4g089095	71.186	59	16	1	44	102	48	105	5.29e-26	105
MsG0580025612.01.T01	MTR_4g089095	71.186	59	16	1	44	102	14	71	5.78e-26	104
MsG0580025612.01.T01	MTR_6g027450	45.545	101	44	1	3	103	57	146	8.45e-26	105
MsG0580025612.01.T01	MTR_6g012450	50.000	94	47	0	6	99	96	189	1.29e-25	107
MsG0580025612.01.T01	MTR_4g082060	58.108	74	31	0	31	104	107	180	1.70e-25	107
MsG0580025612.01.T01	MTR_6g027460	45.545	101	44	1	3	103	64	153	1.94e-25	105
MsG0580025612.01.T01	MTR_2g013370	71.930	57	15	1	46	102	46	101	2.23e-25	103
MsG0580025612.01.T01	MTR_8g044220	40.625	128	63	3	12	128	86	211	4.09e-25	105
MsG0580025612.01.T01	MTR_5g041420	48.571	105	43	1	6	99	87	191	6.00e-25	103
MsG0580025612.01.T01	MTR_7g010950	60.870	69	27	0	31	99	120	188	6.77e-25	105
MsG0580025612.01.T01	MTR_7g086780	47.059	102	50	1	2	103	59	156	1.47e-24	103
MsG0580025612.01.T01	MTR_3g435480	62.687	67	25	0	38	104	128	194	2.09e-24	103
MsG0580025612.01.T01	MTR_2g016030	63.492	63	23	0	37	99	38	100	2.82e-24	97.4
MsG0580025612.01.T01	MTR_5g041380	51.807	83	40	0	29	111	110	192	8.29e-22	95.5
MsG0580025612.01.T01	MTR_5g041400	56.338	71	31	0	29	99	102	172	9.43e-22	95.1
MsG0580025612.01.T01	MTR_5g041530	68.519	54	17	0	46	99	140	193	2.45e-21	94.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025612.01.T01	AT5G65590	43.252	326	141	17	33	344	21	316	8.53e-66	210
MsG0580025612.01.T01	AT5G60200	67.073	82	27	0	28	109	37	118	2.93e-37	134
MsG0580025612.01.T01	AT2G37590	80.328	61	12	0	42	102	85	145	8.62e-34	127
MsG0580025612.01.T01	AT1G51700	75.714	70	16	1	41	109	28	97	1.42e-33	123
MsG0580025612.01.T01	AT2G28510	44.937	158	82	3	48	201	50	206	4.06e-33	124
MsG0580025612.01.T01	AT2G28810	67.606	71	23	0	27	97	58	128	5.18e-33	125
MsG0580025612.01.T01	AT2G28810	67.606	71	23	0	27	97	75	145	9.44e-33	125
MsG0580025612.01.T01	AT3G55370	75.000	68	17	0	42	109	72	139	9.52e-33	124
MsG0580025612.01.T01	AT3G55370	75.000	68	17	0	42	109	72	139	1.30e-32	125
MsG0580025612.01.T01	AT3G45610	68.493	73	23	0	35	107	29	101	1.35e-32	122
MsG0580025612.01.T01	AT3G55370	75.000	68	17	0	42	109	117	184	1.58e-32	125
MsG0580025612.01.T01	AT5G02460	81.356	59	11	0	42	100	91	149	1.23e-31	123
MsG0580025612.01.T01	AT1G07640	66.216	74	25	0	27	100	2	75	2.70e-31	119
MsG0580025612.01.T01	AT1G07640	66.216	74	25	0	27	100	58	131	3.88e-31	120
MsG0580025612.01.T01	AT1G07640	85.455	55	8	0	46	100	85	139	5.58e-31	120
MsG0580025612.01.T01	AT3G21270	88.679	53	6	0	46	98	29	81	6.27e-31	116
MsG0580025612.01.T01	AT3G52440	59.000	100	30	2	43	142	22	110	7.66e-31	117
MsG0580025612.01.T01	AT5G60850	78.333	60	13	0	44	103	49	108	1.05e-30	118
MsG0580025612.01.T01	AT3G52440	59.000	100	30	2	43	142	41	129	1.44e-30	117
MsG0580025612.01.T01	AT4G38000	57.426	101	30	2	37	124	20	120	8.87e-30	114
MsG0580025612.01.T01	AT3G61850	51.724	116	45	4	42	156	58	163	9.07e-30	115
MsG0580025612.01.T01	AT3G61850	51.724	116	45	4	42	156	58	163	9.07e-30	115
MsG0580025612.01.T01	AT3G61850	51.724	116	45	4	42	156	70	175	1.03e-29	115
MsG0580025612.01.T01	AT3G61850	51.724	116	45	4	42	156	58	163	1.42e-29	115
MsG0580025612.01.T01	AT3G61850	51.724	116	45	4	42	156	70	175	1.62e-29	115
MsG0580025612.01.T01	AT1G28310	78.947	57	12	0	46	102	27	83	3.47e-29	114
MsG0580025612.01.T01	AT4G21050	67.647	68	21	1	40	107	19	85	5.66e-29	111
MsG0580025612.01.T01	AT1G28310	78.947	57	12	0	46	102	51	107	5.77e-29	114
MsG0580025612.01.T01	AT1G21340	70.968	62	18	0	48	109	40	101	2.32e-28	111
MsG0580025612.01.T01	AT4G00940	68.182	66	21	0	36	101	58	123	7.56e-28	110
MsG0580025612.01.T01	AT4G00940	68.182	66	21	0	36	101	58	123	7.56e-28	110
MsG0580025612.01.T01	AT4G00940	68.182	66	21	0	36	101	58	123	7.56e-28	110
MsG0580025612.01.T01	AT4G24060	75.862	58	14	0	43	100	50	107	1.34e-27	111
MsG0580025612.01.T01	AT5G62940	75.862	58	13	1	40	96	66	123	1.64e-27	111
MsG0580025612.01.T01	AT2G34140	52.326	86	41	0	14	99	26	111	5.16e-27	105
MsG0580025612.01.T01	AT3G50410	70.690	58	17	0	43	100	27	84	8.09e-27	107
MsG0580025612.01.T01	AT1G26790	44.444	117	64	1	13	129	78	193	3.55e-26	107
MsG0580025612.01.T01	AT5G66940	61.538	65	25	0	43	107	29	93	5.67e-26	103
MsG0580025612.01.T01	AT2G46590	76.923	52	12	0	42	93	64	115	9.78e-26	106
MsG0580025612.01.T01	AT2G46590	76.923	52	12	0	42	93	76	127	1.14e-25	106
MsG0580025612.01.T01	AT1G29160	62.319	69	26	0	31	99	47	115	1.25e-25	101
MsG0580025612.01.T01	AT5G62430	61.429	70	27	0	30	99	38	107	3.65e-25	103
MsG0580025612.01.T01	AT1G64620	75.472	53	13	0	43	95	46	98	6.72e-25	103
MsG0580025612.01.T01	AT3G47500	53.846	91	38	1	38	128	102	188	9.49e-25	104
MsG0580025612.01.T01	AT1G69570	59.420	69	28	0	36	104	122	190	4.31e-24	102
MsG0580025612.01.T01	AT5G39660	55.844	77	34	0	40	116	132	208	5.49e-24	102
MsG0580025612.01.T01	AT5G39660	55.844	77	34	0	40	116	132	208	5.49e-24	102
MsG0580025612.01.T01	AT5G39660	55.844	77	34	0	40	116	132	208	5.49e-24	102
MsG0580025612.01.T01	AT1G47655	57.971	69	27	1	28	94	9	77	8.61e-24	97.8
MsG0580025612.01.T01	AT4G21040	76.923	52	12	0	48	99	27	78	3.30e-23	96.7
MsG0580025612.01.T01	AT4G21080	65.079	63	21	1	48	109	27	89	1.15e-22	95.5
MsG0580025612.01.T01	AT4G21030	42.683	82	42	2	30	109	8	86	2.40e-14	71.2

Find 43 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTCAAGATTCTGAAACAAAA+TGG	0.209045	5:-21248530	None:intergenic
TTCTCTTTCTTCACCTTCCA+TGG	0.316516	5:+21248120	MsG0580025612.01.T01:CDS
TTATAATTACCTGATGAAAA+AGG	0.326439	5:-21248307	None:intergenic
GCAAAACATGTAGAAGATAT+TGG	0.332074	5:+21247945	MsG0580025612.01.T01:CDS
TTTCTCCAAAAGATGAAAAC+TGG	0.363395	5:-21248225	None:intergenic
TCTTCTTCTTCAGAGCTTGT+TGG	0.374369	5:+21248079	MsG0580025612.01.T01:CDS
TGGAATGGAGGTGGTGTTCA+TGG	0.438875	5:+21248700	MsG0580025612.01.T01:CDS
AACAATAATAAACAAGGTTC+TGG	0.446078	5:+21247782	MsG0580025612.01.T01:CDS
TAGGAGTAGTAGAAATTTGA+GGG	0.447158	5:-21248195	None:intergenic
TGTAGAAGATATTGGACAAA+AGG	0.447881	5:+21247953	MsG0580025612.01.T01:CDS
ATGGAGGTGGTGTTCATGGT+TGG	0.452930	5:+21248704	MsG0580025612.01.T01:CDS
TGATTATGAAGTTGAAGTCT+TGG	0.460479	5:-21248172	None:intergenic
TCAAGATTCTGAAACAAAAT+GGG	0.479207	5:-21248529	None:intergenic
TCTTCTTCAGAGCTTGTTGG+TGG	0.480751	5:+21248082	MsG0580025612.01.T01:CDS
TCTGCTATGAATAACTATCA+TGG	0.480809	5:+21248253	MsG0580025612.01.T01:CDS
GTAGCTTCCAGTGCAAGTCT+TGG	0.484387	5:-21248417	None:intergenic
ATAGGAGTAGTAGAAATTTG+AGG	0.486036	5:-21248196	None:intergenic
CGCAACGTTCCAATCGGTGG+TGG	0.493729	5:+21247986	MsG0580025612.01.T01:CDS
CCTACTGCAAGTGGTGGAGC+TGG	0.519120	5:+21248658	MsG0580025612.01.T01:CDS
TTTCTACATCCACCACCGAT+TGG	0.522050	5:-21247995	None:intergenic
GGTGGAGCTGGACATGATAG+TGG	0.524755	5:+21248670	MsG0580025612.01.T01:CDS
GTGTTGGGTGAGTCACATCT+TGG	0.525160	5:-21247872	None:intergenic
AATTATAATGGTGCAATACA+AGG	0.531532	5:+21248322	MsG0580025612.01.T01:CDS
GCTTTACGCAACGTTCCAAT+CGG	0.531943	5:+21247980	MsG0580025612.01.T01:CDS
CTATGAACCAAGACTTGCAC+TGG	0.534331	5:+21248410	MsG0580025612.01.T01:CDS
TGGAAGGTGAAGAAAGAGAA+TGG	0.535036	5:-21248117	None:intergenic
GATTCTGAAACAAAATGGGT+TGG	0.535817	5:-21248525	None:intergenic
GACATGATAGTGGAAGCAAC+TGG	0.536262	5:+21248680	MsG0580025612.01.T01:CDS
GATGAAAACTGGTTATACAT+AGG	0.549549	5:-21248214	None:intergenic
TGAAACAAAATGGGTTGGAG+TGG	0.578171	5:-21248520	None:intergenic
AGAAGATATTGGACAAAAGG+TGG	0.584366	5:+21247956	MsG0580025612.01.T01:CDS
AATAATAAACAAGGTTCTGG+TGG	0.584803	5:+21247785	MsG0580025612.01.T01:CDS
GATAGTGGAAGCAACTGGAA+TGG	0.593132	5:+21248685	MsG0580025612.01.T01:CDS
ACTACCAAGATGAAAATCCA+TGG	0.598151	5:-21248137	None:intergenic
CCAAGATGAAAATCCATGGA+AGG	0.609817	5:-21248133	None:intergenic
TTACGCAACGTTCCAATCGG+TGG	0.621443	5:+21247983	MsG0580025612.01.T01:CDS
CCAGCTCCACCACTTGCAGT+AGG	0.633722	5:-21248658	None:intergenic
GAGAAGATGCAGCAACTGAG+TGG	0.651408	5:+21248599	MsG0580025612.01.T01:CDS
GGAAGCAACTGGAATGGAGG+TGG	0.653313	5:+21248691	MsG0580025612.01.T01:CDS
ATCAACAACAATAATAAACA+AGG	0.666570	5:+21247776	MsG0580025612.01.T01:CDS
GCTGCTACACCTACTGCAAG+TGG	0.675331	5:+21248649	MsG0580025612.01.T01:CDS
AGTGGAAGCAACTGGAATGG+AGG	0.675339	5:+21248688	MsG0580025612.01.T01:CDS
GCTACACCTACTGCAAGTGG+TGG	0.683188	5:+21248652	MsG0580025612.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATCAACAACAATAATAAACA+AGG	+	Chr5:21247776-21247795	MsG0580025612.01.T01:CDS	20.0%
!!	TTATAATTACCTGATGAAAA+AGG	-	Chr5:21248310-21248329	None:intergenic	20.0%
!!!	TTGTTGATGTTTTTTTCTTT+TGG	-	Chr5:21247764-21247783	None:intergenic	20.0%
!!!	TTTTCATCAGGTAATTATAA+TGG	+	Chr5:21248310-21248329	MsG0580025612.01.T01:CDS	20.0%
!	AACAATAATAAACAAGGTTC+TGG	+	Chr5:21247782-21247801	MsG0580025612.01.T01:CDS	25.0%
!	AATTATAATGGTGCAATACA+AGG	+	Chr5:21248322-21248341	MsG0580025612.01.T01:CDS	25.0%
!!	CAAAGATTATCTATGCTTTT+TGG	+	Chr5:21248445-21248464	MsG0580025612.01.T01:CDS	25.0%
!!	TATAACCAGTTTTCATCTTT+TGG	+	Chr5:21248220-21248239	MsG0580025612.01.T01:CDS	25.0%
!!!	TCAAGATTCTGAAACAAAAT+GGG	-	Chr5:21248532-21248551	None:intergenic	25.0%
!!!	TTTTTCTTTTGGAGATTTTG+AGG	-	Chr5:21247753-21247772	None:intergenic	25.0%
	ATAGGAGTAGTAGAAATTTG+AGG	-	Chr5:21248199-21248218	None:intergenic	30.0%
	GATGAAAACTGGTTATACAT+AGG	-	Chr5:21248217-21248236	None:intergenic	30.0%
	GCAAAACATGTAGAAGATAT+TGG	+	Chr5:21247945-21247964	MsG0580025612.01.T01:CDS	30.0%
	TAGGAGTAGTAGAAATTTGA+GGG	-	Chr5:21248198-21248217	None:intergenic	30.0%
	TCTGCTATGAATAACTATCA+TGG	+	Chr5:21248253-21248272	MsG0580025612.01.T01:CDS	30.0%
	TGATTATGAAGTTGAAGTCT+TGG	-	Chr5:21248175-21248194	None:intergenic	30.0%
	TGTAGAAGATATTGGACAAA+AGG	+	Chr5:21247953-21247972	MsG0580025612.01.T01:CDS	30.0%
	TTTCTCCAAAAGATGAAAAC+TGG	-	Chr5:21248228-21248247	None:intergenic	30.0%
!	AATAATAAACAAGGTTCTGG+TGG	+	Chr5:21247785-21247804	MsG0580025612.01.T01:CDS	30.0%
!	TAGTAGCAGAATTTTGTGTT+GGG	-	Chr5:21247890-21247909	None:intergenic	30.0%
!!	AGATTATCTATGCTTTTTGG+TGG	+	Chr5:21248448-21248467	MsG0580025612.01.T01:CDS	30.0%
!!	ATGAACTATCCTTTTTCATC+AGG	+	Chr5:21248298-21248317	MsG0580025612.01.T01:CDS	30.0%
!!	CATTTTGTTTCAGAATCTTG+AGG	+	Chr5:21248531-21248550	MsG0580025612.01.T01:CDS	30.0%
!!	CTCAAGATTCTGAAACAAAA+TGG	-	Chr5:21248533-21248552	None:intergenic	30.0%
!!!	TGGTTTTTTGGGAATTCTTA+TGG	+	Chr5:21248619-21248638	MsG0580025612.01.T01:CDS	30.0%
	ACTACCAAGATGAAAATCCA+TGG	-	Chr5:21248140-21248159	None:intergenic	35.0%
	AGAAGATATTGGACAAAAGG+TGG	+	Chr5:21247956-21247975	MsG0580025612.01.T01:CDS	35.0%
!	ATGGATTTTCATCTTGGTAG+TGG	+	Chr5:21248139-21248158	MsG0580025612.01.T01:CDS	35.0%
!	CATGTTTTGCAGAAATGTCT+TGG	-	Chr5:21247935-21247954	None:intergenic	35.0%
!	GTAGTAGCAGAATTTTGTGT+TGG	-	Chr5:21247891-21247910	None:intergenic	35.0%
!!	GATGATAGAGCTTTTTCTGT+TGG	+	Chr5:21248565-21248584	MsG0580025612.01.T01:CDS	35.0%
!!	GATTCTGAAACAAAATGGGT+TGG	-	Chr5:21248528-21248547	None:intergenic	35.0%
!!	TTATCTATGCTTTTTGGTGG+TGG	+	Chr5:21248451-21248470	MsG0580025612.01.T01:CDS	35.0%
	CCAAGATGAAAATCCATGGA+AGG	-	Chr5:21248136-21248155	None:intergenic	40.0%
	TCTTCTTCTTCAGAGCTTGT+TGG	+	Chr5:21248079-21248098	MsG0580025612.01.T01:CDS	40.0%
	TGGAAGGTGAAGAAAGAGAA+TGG	-	Chr5:21248120-21248139	None:intergenic	40.0%
	TTCTCTTTCTTCACCTTCCA+TGG	+	Chr5:21248120-21248139	MsG0580025612.01.T01:CDS	40.0%
!	CCTTCCATGGATTTTCATCT+TGG	+	Chr5:21248133-21248152	MsG0580025612.01.T01:CDS	40.0%
!!	CACTTCATGTTTTGTTCTGG+TGG	-	Chr5:21247851-21247870	None:intergenic	40.0%
!!	GGACACTTCATGTTTTGTTC+TGG	-	Chr5:21247854-21247873	None:intergenic	40.0%
!!	TGAAACAAAATGGGTTGGAG+TGG	-	Chr5:21248523-21248542	None:intergenic	40.0%
!!!	CAGCAACTGAGTGGTTTTTT+GGG	+	Chr5:21248608-21248627	MsG0580025612.01.T01:CDS	40.0%
!!!	TTCTGGTGGTTTTGTTGTTG+AGG	-	Chr5:21247837-21247856	None:intergenic	40.0%
	CTATGAACCAAGACTTGCAC+TGG	+	Chr5:21248410-21248429	MsG0580025612.01.T01:CDS	45.0%
	GCTTTACGCAACGTTCCAAT+CGG	+	Chr5:21247980-21247999	MsG0580025612.01.T01:CDS	45.0%
	TTTCTACATCCACCACCGAT+TGG	-	Chr5:21247998-21248017	None:intergenic	45.0%
!!	GACATGATAGTGGAAGCAAC+TGG	+	Chr5:21248680-21248699	MsG0580025612.01.T01:CDS	45.0%
!!	GATAGTGGAAGCAACTGGAA+TGG	+	Chr5:21248685-21248704	MsG0580025612.01.T01:CDS	45.0%
!!	TCTTCTTCAGAGCTTGTTGG+TGG	+	Chr5:21248082-21248101	MsG0580025612.01.T01:CDS	45.0%
!!!	GCAGCAACTGAGTGGTTTTT+TGG	+	Chr5:21248607-21248626	MsG0580025612.01.T01:CDS	45.0%
	AGTGGAAGCAACTGGAATGG+AGG	+	Chr5:21248688-21248707	MsG0580025612.01.T01:CDS	50.0%
	ATGGAGGTGGTGTTCATGGT+TGG	+	Chr5:21248704-21248723	MsG0580025612.01.T01:CDS	50.0%
	GAGAAGATGCAGCAACTGAG+TGG	+	Chr5:21248599-21248618	MsG0580025612.01.T01:CDS	50.0%
	GTAGCTTCCAGTGCAAGTCT+TGG	-	Chr5:21248420-21248439	None:intergenic	50.0%
	GTGTTGGGTGAGTCACATCT+TGG	-	Chr5:21247875-21247894	None:intergenic	50.0%
	TGGAATGGAGGTGGTGTTCA+TGG	+	Chr5:21248700-21248719	MsG0580025612.01.T01:CDS	50.0%
	TTACGCAACGTTCCAATCGG+TGG	+	Chr5:21247983-21248002	MsG0580025612.01.T01:CDS	50.0%
	GCTACACCTACTGCAAGTGG+TGG	+	Chr5:21248652-21248671	MsG0580025612.01.T01:CDS	55.0%
	GCTGCTACACCTACTGCAAG+TGG	+	Chr5:21248649-21248668	MsG0580025612.01.T01:CDS	55.0%
	GGAAGCAACTGGAATGGAGG+TGG	+	Chr5:21248691-21248710	MsG0580025612.01.T01:CDS	55.0%
	GGTGGAGCTGGACATGATAG+TGG	+	Chr5:21248670-21248689	MsG0580025612.01.T01:CDS	55.0%
	CCAGCTCCACCACTTGCAGT+AGG	-	Chr5:21248661-21248680	None:intergenic	60.0%
	CGCAACGTTCCAATCGGTGG+TGG	+	Chr5:21247986-21248005	MsG0580025612.01.T01:CDS	60.0%
!	CCTACTGCAAGTGGTGGAGC+TGG	+	Chr5:21248658-21248677	MsG0580025612.01.T01:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	21247728	21248762	21247728	ID=MsG0580025612.01;Name=MsG0580025612.01
Chr5	mRNA	21247728	21248762	21247728	ID=MsG0580025612.01.T01;Parent=MsG0580025612.01;Name=MsG0580025612.01.T01;_AED=0.21;_eAED=0.21;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|344
Chr5	exon	21247728	21248762	21247728	ID=MsG0580025612.01.T01:exon:23583;Parent=MsG0580025612.01.T01
Chr5	CDS	21247728	21248762	21247728	ID=MsG0580025612.01.T01:cds;Parent=MsG0580025612.01.T01

Gene Sequence

>MsG0580025612.01.T01

ATGTCACAAAATGAAACACAAACCTCAAAATCTCCAAAAGAAAAAAACATCAACAACAATAATAAACAAGGTTCTGGTGGTAAGAAAACATCTTCATCATCTTCTACCTCAACAACAAAACCACCAGAACAAAACATGAAGTGTCCAAGATGTGACTCACCCAACACAAAATTCTGCTACTACAACAACTATAGCTTAACACAACCAAGACATTTCTGCAAAACATGTAGAAGATATTGGACAAAAGGTGGAGCTTTACGCAACGTTCCAATCGGTGGTGGATGTAGAAAAAACAAGAAAATGAAATCATCATCATCATCAAGACTCTCTTGTGATTCAAAAGACTCAGCTTCTTCTTCTTCAGAGCTTGTTGGTGGCTTGAAATTTCTCCATTCTCTTTCTTCACCTTCCATGGATTTTCATCTTGGTAGTGGTTTATCTTTTCCAAGACTTCAACTTCATAATCACCCTCAAATTTCTACTACTCCTATGTATAACCAGTTTTCATCTTTTGGAGAAACTTCTTCTGCTATGAATAACTATCATGGTTCTTCAAATTCTGTTGCTGCTATGAACTATCCTTTTTCATCAGGTAATTATAATGGTGCAATACAAGGTATGAGTTCAATGAATATTAATCATAGCAATAATAATATTGCTTCTTCTATTGAATCATTGAGTTCTATGAACCAAGACTTGCACTGGAAGCTACAGCAACAAAGATTATCTATGCTTTTTGGTGGTGGAGAAAATCAGAAAGATAATAACAATCTTCAGAATCAGACAGAGAAGCCACTCCAACCCATTTTGTTTCAGAATCTTGAGGTTACAAAGAATGATGATAGAGCTTTTTCTGTTGGAAATTCAAGAAGAGAAGATGCAGCAACTGAGTGGTTTTTTGGGAATTCTTATGGTTCAGCTGCTGCTACACCTACTGCAAGTGGTGGAGCTGGACATGATAGTGGAAGCAACTGGAATGGAGGTGGTGTTCATGGTTGGAGTGATGTGCAACAGCAATATAGTGCTTTGCCCTAG

Protein sequence

>MsG0580025612.01.T01

MSQNETQTSKSPKEKNINNNNKQGSGGKKTSSSSSTSTTKPPEQNMKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKMKSSSSSRLSCDSKDSASSSSELVGGLKFLHSLSSPSMDFHLGSGLSFPRLQLHNHPQISTTPMYNQFSSFGETSSAMNNYHGSSNSVAAMNYPFSSGNYNGAIQGMSSMNINHSNNNIASSIESLSSMNQDLHWKLQQQRLSMLFGGGENQKDNNNLQNQTEKPLQPILFQNLEVTKNDDRAFSVGNSRREDAATEWFFGNSYGSAAATPTASGGAGHDSGSNWNGGGVHGWSDVQQQYSALP*