AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016677.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016677.01.T01 MTR_3g093070 97.368 456 8 1 26 477 1 456 0.0 926
MsG0380016677.01.T01 MTR_3g093070 98.194 443 8 0 35 477 1 443 0.0 912
MsG0380016677.01.T01 MTR_5g068820 77.752 427 89 2 54 474 16 442 0.0 667
MsG0380016677.01.T01 MTR_5g068820 78.591 369 73 2 112 474 1 369 0.0 584
MsG0380016677.01.T01 MTR_5g068820 79.130 345 72 0 54 398 16 360 0.0 576
MsG0380016677.01.T01 MTR_8g023830 65.083 421 143 2 59 475 46 466 0.0 553
MsG0380016677.01.T01 MTR_8g023830 66.764 343 110 2 59 397 46 388 5.24e-161 461
MsG0380016677.01.T01 MTR_8g023830 68.932 309 92 2 59 363 46 354 1.07e-147 426
MsG0380016677.01.T01 MTR_7g111640 89.796 49 5 0 328 376 22 70 1.61e-24 97.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016677.01.T01 AT5G54130 74.944 443 99 5 36 476 3 435 0.0 686
MsG0380016677.01.T01 AT1G02270 60.373 429 163 3 46 473 62 484 0.0 546
MsG0380016677.01.T01 AT5G54130 75.602 332 76 3 36 366 3 330 0.0 530
MsG0380016677.01.T01 AT5G54130 75.000 332 76 4 36 366 3 328 0.0 519
MsG0380016677.01.T01 AT1G02270 59.714 350 139 2 125 473 1 349 2.60e-154 442

Find 95 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGACTATAAAGAATTTC+TGG 0.149480 3:-86493573 MsG0380016677.01.T01:intron
GAAGATTGTATTACGTATTC+TGG 0.231159 3:-86493816 MsG0380016677.01.T01:CDS
TGGTGGATTAGTATCGTTTA+AGG 0.241206 3:+86495690 None:intergenic
TATTGTTGTATCACATATAA+AGG 0.241529 3:-86495814 MsG0380016677.01.T01:CDS
CGTGGTTGCAGCAGCAAATA+TGG 0.248857 3:-86493038 MsG0380016677.01.T01:intron
CTCTTCTATTATTTGTCTTC+AGG 0.252352 3:-86495427 MsG0380016677.01.T01:intron
TCATTGATGCGTTTGTAAAT+AGG 0.260373 3:+86495628 None:intergenic
TCTTTGCAGCTCAATTTAAT+TGG 0.269178 3:-86493668 MsG0380016677.01.T01:intron
TTGAATTTGTGAAGGAGTTT+TGG 0.271683 3:-86495319 MsG0380016677.01.T01:intron
AGTTGGAGTGAAGCAGTATT+TGG 0.273393 3:-86494101 MsG0380016677.01.T01:CDS
GTGATGCATTCACATTTCTA+AGG 0.290322 3:-86493848 MsG0380016677.01.T01:CDS
GTTGAGTGAGGAAGAGATAA+AGG 0.304033 3:-86493633 MsG0380016677.01.T01:CDS
AATGGCGAAACGGTGAAATT+AGG 0.348821 3:-86494729 MsG0380016677.01.T01:CDS
GGCAAGGAATCATAGGATAT+TGG 0.361655 3:-86495469 MsG0380016677.01.T01:CDS
AAGAGACGACAACAAGAATA+AGG 0.370878 3:-86492995 MsG0380016677.01.T01:CDS
AATTACCCGCATAGCATGAT+TGG 0.373854 3:+86494495 None:intergenic
GAGTTGCACTTCAACGATAT+TGG 0.376186 3:-86494802 MsG0380016677.01.T01:CDS
GACGTTCAAGAACAAACAAT+TGG 0.391637 3:-86492952 MsG0380016677.01.T01:CDS
TGGGAGCACGGCATTCTTAT+CGG 0.397622 3:+86492823 None:intergenic
CATTGTGTCAGCAAATCATC+TGG 0.415046 3:+86492803 None:intergenic
CGTAATACAATCTTCATTCT+CGG 0.415852 3:+86493824 None:intergenic
ATTGGTTGGCAAGGAATCAT+AGG 0.425259 3:-86495476 MsG0380016677.01.T01:CDS
GGTTAGTCACCGCAATCATC+GGG 0.427328 3:-86494192 MsG0380016677.01.T01:CDS
ATTGTTGTATCACATATAAA+GGG 0.439173 3:-86495813 MsG0380016677.01.T01:CDS
ATCTCTTGTACGATTGAAAC+AGG 0.442832 3:-86494653 MsG0380016677.01.T01:intron
TTCCCTCCTGAGGTGGAGAA+AGG 0.462650 3:-86492904 MsG0380016677.01.T01:CDS
CCGCATAGCATGATTGGCAT+TGG 0.463891 3:+86494501 None:intergenic
TCAGAAAGGGAGTAGTCTTC+CGG 0.466059 3:+86492874 None:intergenic
AGGAAGAGATAAAGGAGTTG+TGG 0.467760 3:-86493625 MsG0380016677.01.T01:CDS
AAAGCATGGGAAGGATTTCA+AGG 0.474928 3:-86495738 MsG0380016677.01.T01:CDS
AGCAGTATTTGGCATGTTCA+AGG 0.480053 3:-86494090 MsG0380016677.01.T01:intron
AAGAATAAGGAGCAGGAAGA+TGG 0.483958 3:-86492982 MsG0380016677.01.T01:CDS
GGGTTAGTCACCGCAATCAT+CGG 0.484438 3:-86494193 MsG0380016677.01.T01:CDS
CAAGCTGACATAGATGGAAA+TGG 0.487916 3:-86493599 MsG0380016677.01.T01:CDS
AGTCACTCTCTCGACAAGTT+GGG 0.491261 3:+86495508 None:intergenic
ATATAAAGGGACATTATCAT+TGG 0.492992 3:-86495800 MsG0380016677.01.T01:CDS
CTGAGGTGGAGAAAGGTAGA+TGG 0.494182 3:-86492897 MsG0380016677.01.T01:CDS
GAAAATTACTAAAAGCAAGT+TGG 0.494595 3:-86494118 MsG0380016677.01.T01:CDS
CATCTACCTTTCTCCACCTC+AGG 0.495969 3:+86492898 None:intergenic
TACAAATTCCTGAGGTCCCA+GGG 0.496535 3:-86494361 MsG0380016677.01.T01:CDS
GGTTATGTTAGTTTCAAACT+TGG 0.498826 3:-86495245 MsG0380016677.01.T01:CDS
TTACAAATTCCTGAGGTCCC+AGG 0.501386 3:-86494362 MsG0380016677.01.T01:CDS
GAAAAGAGACTTGGAGATGC+TGG 0.501756 3:-86495266 MsG0380016677.01.T01:CDS
TTTCTGTGAAGCACTTCGAC+AGG 0.502170 3:-86493793 MsG0380016677.01.T01:intron
ATACAAAACCCTGGGACCTC+AGG 0.504226 3:+86494353 None:intergenic
TAAAGGGACATTATCATTGG+TGG 0.515631 3:-86495797 MsG0380016677.01.T01:CDS
TTGCATCGTGAGGAAATAGA+AGG 0.517561 3:+86494680 None:intergenic
CAATGCCAATCATGCTATGC+GGG 0.524290 3:-86494500 MsG0380016677.01.T01:intron
GGAAGAGATAAAGGAGTTGT+GGG 0.527364 3:-86493624 MsG0380016677.01.T01:CDS
AAGTCGAGCATGATCAGAAA+GGG 0.528485 3:+86492861 None:intergenic
TAGTCACTCTCTCGACAAGT+TGG 0.536188 3:+86495507 None:intergenic
TTTGAACGTAGAATGAGAAC+GGG 0.538447 3:-86495772 MsG0380016677.01.T01:CDS
CATTTCCATCTATGTCAGCT+TGG 0.539383 3:+86493600 None:intergenic
TAAGTCGAGCATGATCAGAA+AGG 0.539993 3:+86492860 None:intergenic
TGGGTCCAAGCTGACATAGA+TGG 0.540867 3:-86493605 MsG0380016677.01.T01:CDS
TGATTGGCATTGGCTTGAGT+TGG 0.541280 3:+86494511 None:intergenic
GGAATCATAGGATATTGGAT+TGG 0.544273 3:-86495464 MsG0380016677.01.T01:CDS
AAAGGGACATTATCATTGGT+GGG 0.545786 3:-86495796 MsG0380016677.01.T01:CDS
ATGGGAAGGATTTCAAGGAT+TGG 0.546080 3:-86495733 MsG0380016677.01.T01:CDS
CGACAACAAGAATAAGGAGC+AGG 0.549044 3:-86492989 MsG0380016677.01.T01:CDS
TGATGCATTCACATTTCTAA+GGG 0.550311 3:-86493847 MsG0380016677.01.T01:CDS
CACTGATGCAGATGCTGACA+AGG 0.551387 3:-86494305 MsG0380016677.01.T01:intron
AATTTGTATGAAAAGAGACT+TGG 0.556763 3:-86495275 MsG0380016677.01.T01:CDS
TTGTTTCTCAGTGACTGGAA+TGG 0.560382 3:-86494403 MsG0380016677.01.T01:intron
GACTGGAATGGAAGCAAGCG+TGG 0.563929 3:-86494391 MsG0380016677.01.T01:CDS
AGAGTGACTATAGAGCATAT+TGG 0.564609 3:-86495494 MsG0380016677.01.T01:CDS
GCGAAACGGTGAAATTAGGC+AGG 0.564680 3:-86494725 MsG0380016677.01.T01:CDS
ATGTTAGTTTCAAACTTGGA+AGG 0.564896 3:-86495241 MsG0380016677.01.T01:CDS
AGGACGAACAACCGTGGAGA+TGG 0.568957 3:-86495221 MsG0380016677.01.T01:intron
GTAGAATGAGAACGGGTAAG+TGG 0.570816 3:-86495765 MsG0380016677.01.T01:CDS
TGACTATAGAGCATATTGGT+TGG 0.573810 3:-86495490 MsG0380016677.01.T01:CDS
CTACCTTTCTCCACCTCAGG+AGG 0.577262 3:+86492901 None:intergenic
CAGCAAATCATCTGGGAGCA+CGG 0.578468 3:+86492811 None:intergenic
ATAGAGCATATTGGTTGGCA+AGG 0.582004 3:-86495485 MsG0380016677.01.T01:CDS
ATATATTTCCCCGATGATTG+CGG 0.591841 3:+86494183 None:intergenic
AGGAGCAAGAATGTTAAAAG+TGG 0.592566 3:+86495648 None:intergenic
CATCGTGAGGAAATAGAAGG+TGG 0.593034 3:+86494683 None:intergenic
CAAGTAATGCAAGGTTGTGG+TGG 0.598052 3:+86495673 None:intergenic
TTACAAACGCATCAATGATG+AGG 0.600751 3:-86495623 MsG0380016677.01.T01:intron
GGTGGAGAAAGGTAGATGGC+CGG 0.616375 3:-86492893 MsG0380016677.01.T01:CDS
TAGAATGAGAACGGGTAAGT+GGG 0.630123 3:-86495764 MsG0380016677.01.T01:CDS
AAAGTGGTGCAAGTAATGCA+AGG 0.633549 3:+86495664 None:intergenic
CGTAAGACGATACAAAACCC+TGG 0.634874 3:+86494344 None:intergenic
GTAAGACGATACAAAACCCT+GGG 0.637957 3:+86494345 None:intergenic
TACCTTTCTCCACCTCAGGA+GGG 0.639590 3:+86492902 None:intergenic
GACATGTTTACAAATTCCTG+AGG 0.641651 3:-86494369 MsG0380016677.01.T01:CDS
ATTGTGTCAGCAAATCATCT+GGG 0.646731 3:+86492804 None:intergenic
AGAGATAGCGTTGCATCGTG+AGG 0.646885 3:+86494670 None:intergenic
TCATTCTCATGAGTTGAGTG+AGG 0.655974 3:-86493645 MsG0380016677.01.T01:CDS
ATCGTGAGGAAATAGAAGGT+GGG 0.667884 3:+86494684 None:intergenic
CTTGGAAGGACGAACAACCG+TGG 0.669893 3:-86495227 MsG0380016677.01.T01:CDS
GTGCAAGTAATGCAAGGTTG+TGG 0.682671 3:+86495670 None:intergenic
CCAATGCCAATCATGCTATG+CGG 0.686315 3:-86494501 MsG0380016677.01.T01:CDS
GAACGCGCATACCATCTCCA+CGG 0.721216 3:+86495210 None:intergenic
GTTAGTCACCGCAATCATCG+GGG 0.740550 3:-86494191 MsG0380016677.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTAAACATGTTATA+TGG + Chr3:86493580-86493599 None:intergenic 10.0%
!! GTTTAAAAAATATTTACTGA+GGG - Chr3:86493588-86493607 MsG0380016677.01.T01:CDS 15.0%
!! TGTTTAAAAAATATTTACTG+AGG - Chr3:86493587-86493606 MsG0380016677.01.T01:CDS 15.0%
!! TTGTAATAATGTATTGAATT+GGG - Chr3:86493542-86493561 MsG0380016677.01.T01:intron 15.0%
!! TTTGTAATAATGTATTGAAT+TGG - Chr3:86493541-86493560 MsG0380016677.01.T01:intron 15.0%
!!! AAAAATTTCTCTATTTTTTC+AGG - Chr3:86494744-86494763 MsG0380016677.01.T01:CDS 15.0%
!!! ATAGATTGTTTTTTTTTGAA+AGG + Chr3:86495144-86495163 None:intergenic 15.0%
!!! CTTTAACATTTTCAATTATA+AGG - Chr3:86493821-86493840 MsG0380016677.01.T01:CDS 15.0%
!! AAAAATCCATGTGTTTATAA+GGG - Chr3:86494939-86494958 MsG0380016677.01.T01:intron 20.0%
!! AAACAAAAACAACAAAACAA+AGG + Chr3:86493076-86493095 None:intergenic 20.0%
!! AATATTTAAATGTGGTATAC+AGG - Chr3:86494021-86494040 MsG0380016677.01.T01:intron 20.0%
!! ATAGAATAAGTATAGATGAT+TGG + Chr3:86494416-86494435 None:intergenic 20.0%
!! ATTGTTGTATCACATATAAA+GGG - Chr3:86492832-86492851 MsG0380016677.01.T01:CDS 20.0%
!! CATATTAAATTGTTCTTGTT+AGG + Chr3:86495444-86495463 None:intergenic 20.0%
!! GGTATCAAAATATTTAAATG+TGG - Chr3:86494013-86494032 MsG0380016677.01.T01:intron 20.0%
!! TATTGTTGTATCACATATAA+AGG - Chr3:86492831-86492850 MsG0380016677.01.T01:CDS 20.0%
!! TCAGTAAAAACAATTCTAAA+TGG + Chr3:86493617-86493636 None:intergenic 20.0%
!!! ATTTAGAATTGTTTTTACTG+AGG - Chr3:86493616-86493635 MsG0380016677.01.T01:CDS 20.0%
!!! TAATTTATAGAATTTGCTAC+TGG - Chr3:86495394-86495413 MsG0380016677.01.T01:intron 20.0%
!!! TTTCTTTAGAATTTTTCATC+TGG - Chr3:86494377-86494396 MsG0380016677.01.T01:CDS 20.0%
! AAAAAACCCTTATAAACACA+TGG + Chr3:86494948-86494967 None:intergenic 25.0%
! AATTTGTATGAAAAGAGACT+TGG - Chr3:86493370-86493389 MsG0380016677.01.T01:intron 25.0%
! AGATAAGAATGTGTGTTAAA+TGG + Chr3:86494918-86494937 None:intergenic 25.0%
! ATATAAAGGGACATTATCAT+TGG - Chr3:86492845-86492864 MsG0380016677.01.T01:CDS 25.0%
! CAATTTAATATGTCTATGCA+TGG - Chr3:86495452-86495471 MsG0380016677.01.T01:CDS 25.0%
! GAAAAATCCATGTGTTTATA+AGG - Chr3:86494938-86494957 MsG0380016677.01.T01:intron 25.0%
! GAAAATTACTAAAAGCAAGT+TGG - Chr3:86494527-86494546 MsG0380016677.01.T01:CDS 25.0%
! GTGTTCTACATTTCTATTAT+TGG - Chr3:86493282-86493301 MsG0380016677.01.T01:intron 25.0%
! GTTTAAAAATTGTCATTCAG+TGG - Chr3:86495474-86495493 MsG0380016677.01.T01:CDS 25.0%
! TATTTGTGATGATTGAAAAC+AGG - Chr3:86493113-86493132 MsG0380016677.01.T01:intron 25.0%
! TCAATCATCACAAATATTTG+AGG + Chr3:86493109-86493128 None:intergenic 25.0%
! TCTTGACTATAAAGAATTTC+TGG - Chr3:86495072-86495091 MsG0380016677.01.T01:intron 25.0%
! TTAAAATTTCATCTTGTTGC+AGG - Chr3:86494068-86494087 MsG0380016677.01.T01:intron 25.0%
!! AGTAATTTTCGATATTTGTC+AGG + Chr3:86494517-86494536 None:intergenic 25.0%
!! ATGACTTTTACATGTCTATA+AGG - Chr3:86494625-86494644 MsG0380016677.01.T01:intron 25.0%
!! ATTTTGCTAAAATATCCCTT+TGG - Chr3:86493465-86493484 MsG0380016677.01.T01:intron 25.0%
!! TAGTCTTTCCATTTTCAAAA+TGG - Chr3:86493898-86493917 MsG0380016677.01.T01:intron 25.0%
!! TTTAAGAAAAAGAAGTACAC+TGG + Chr3:86494192-86494211 None:intergenic 25.0%
!! TTTTACATGTCTATAAGGTT+AGG - Chr3:86494630-86494649 MsG0380016677.01.T01:intron 25.0%
!!! ACAGGAATTTTTTAATGACT+AGG - Chr3:86494039-86494058 MsG0380016677.01.T01:intron 25.0%
!!! ATAGCTTGTTTGTTAAATCA+TGG - Chr3:86495573-86495592 MsG0380016677.01.T01:intron 25.0%
!!! CTGCTTATTTGTTTTGATTA+AGG - Chr3:86493248-86493267 MsG0380016677.01.T01:intron 25.0%
!!! GAAAAATGCTTTTAGAGTTT+AGG - Chr3:86493638-86493657 MsG0380016677.01.T01:CDS 25.0%
!!! TATGTGCTGTTGATTTTATT+TGG - Chr3:86494482-86494501 MsG0380016677.01.T01:intron 25.0%
!!! TTTTTGTTTCTTTTGAGCAA+TGG - Chr3:86495520-86495539 MsG0380016677.01.T01:intron 25.0%
AATGTATTGAATTGGGCAAA+GGG - Chr3:86493549-86493568 MsG0380016677.01.T01:intron 30.0%
ACATTTCTATTATTGGCCAA+GGG - Chr3:86493289-86493308 MsG0380016677.01.T01:intron 30.0%
ATGAATTTGTGACAACCAAA+GGG + Chr3:86493483-86493502 None:intergenic 30.0%
CAAAACATGTCACATGTAAT+TGG - Chr3:86495294-86495313 MsG0380016677.01.T01:CDS 30.0%
CGTAATACAATCTTCATTCT+CGG + Chr3:86494824-86494843 None:intergenic 30.0%
CTAATGTGTTGAATTTGTGA+AGG - Chr3:86493318-86493337 MsG0380016677.01.T01:intron 30.0%
CTCTTCTATTATTTGTCTTC+AGG - Chr3:86493218-86493237 MsG0380016677.01.T01:intron 30.0%
GAAGATTGTATTACGTATTC+TGG - Chr3:86494829-86494848 MsG0380016677.01.T01:CDS 30.0%
GCAGTTTATGTCTAGTTAAA+TGG + Chr3:86495347-86495366 None:intergenic 30.0%
GGTGTAAAATTTGTATAGAG+TGG - Chr3:86495495-86495514 MsG0380016677.01.T01:CDS 30.0%
TAATGTATTGAATTGGGCAA+AGG - Chr3:86493548-86493567 MsG0380016677.01.T01:intron 30.0%
TACATTTCTATTATTGGCCA+AGG - Chr3:86493288-86493307 MsG0380016677.01.T01:intron 30.0%
TATTACAAATCCATAACGTC+CGG + Chr3:86493530-86493549 None:intergenic 30.0%
TCATTGATGCGTTTGTAAAT+AGG + Chr3:86493020-86493039 None:intergenic 30.0%
TCTGATATAGTGTTATCCTT+GGG - Chr3:86493759-86493778 MsG0380016677.01.T01:intron 30.0%
TCTTTGCAGCTCAATTTAAT+TGG - Chr3:86494977-86494996 MsG0380016677.01.T01:intron 30.0%
TGATGCATTCACATTTCTAA+GGG - Chr3:86494798-86494817 MsG0380016677.01.T01:CDS 30.0%
TGTAAAAGTCATAACGAAGA+TGG + Chr3:86494617-86494636 None:intergenic 30.0%
TTAGGTCACTCATGATTAAA+TGG + Chr3:86495426-86495445 None:intergenic 30.0%
TTATATGTCAAGGGTTACAT+TGG + Chr3:86493667-86493686 None:intergenic 30.0%
TTCTGATATAGTGTTATCCT+TGG - Chr3:86493758-86493777 MsG0380016677.01.T01:intron 30.0%
! ATGTTAGTTTCAAACTTGGA+AGG - Chr3:86493404-86493423 MsG0380016677.01.T01:intron 30.0%
! ATTCTGGTTGTTATATGTCA+AGG + Chr3:86493677-86493696 None:intergenic 30.0%
! GCGTAGATATAATTTTTCTG+AGG + Chr3:86495205-86495224 None:intergenic 30.0%
! GGTTATGTTAGTTTCAAACT+TGG - Chr3:86493400-86493419 MsG0380016677.01.T01:intron 30.0%
! TCTTTTAATAGCAGTGCAAA+CGG - Chr3:86493794-86493813 MsG0380016677.01.T01:CDS 30.0%
! TGAATTTGTGAAGGAGTTTT+GGG - Chr3:86493327-86493346 MsG0380016677.01.T01:intron 30.0%
! TGTCATCATATTTTTCATGC+CGG - Chr3:86493508-86493527 MsG0380016677.01.T01:intron 30.0%
! TTCTGGTTGTTATATGTCAA+GGG + Chr3:86493676-86493695 None:intergenic 30.0%
! TTGAATTTGTGAAGGAGTTT+TGG - Chr3:86493326-86493345 MsG0380016677.01.T01:intron 30.0%
! TTTTGAACGTAGAATGAGAA+CGG - Chr3:86492872-86492891 MsG0380016677.01.T01:CDS 30.0%
!! GCTTTTGGAAAATGTAATTC+TGG + Chr3:86493693-86493712 None:intergenic 30.0%
!!! GGGATATTTTAGCAAAATTG+AGG + Chr3:86493463-86493482 None:intergenic 30.0%
AAAGGGACATTATCATTGGT+GGG - Chr3:86492849-86492868 MsG0380016677.01.T01:CDS 35.0%
AACTAAAGATTGCACCATAG+TGG + Chr3:86494700-86494719 None:intergenic 35.0%
AAGAGACGACAACAAGAATA+AGG - Chr3:86495650-86495669 MsG0380016677.01.T01:CDS 35.0%
AGAGTGACTATAGAGCATAT+TGG - Chr3:86493151-86493170 MsG0380016677.01.T01:intron 35.0%
AGGAGCAAGAATGTTAAAAG+TGG + Chr3:86493000-86493019 None:intergenic 35.0%
AGTAGTATAGGAAACACATG+TGG + Chr3:86494656-86494675 None:intergenic 35.0%
ATATATTTCCCCGATGATTG+CGG + Chr3:86494465-86494484 None:intergenic 35.0%
ATCTCTTGTACGATTGAAAC+AGG - Chr3:86493992-86494011 MsG0380016677.01.T01:intron 35.0%
ATGTATTGAATTGGGCAAAG+GGG - Chr3:86493550-86493569 MsG0380016677.01.T01:intron 35.0%
ATTGAGTGCTTATCTCTACA+AGG - Chr3:86495258-86495277 MsG0380016677.01.T01:CDS 35.0%
CTATATAATGTCGATGCAGT+GGG - Chr3:86494432-86494451 MsG0380016677.01.T01:intron 35.0%
GACATGTTTACAAATTCCTG+AGG - Chr3:86494276-86494295 MsG0380016677.01.T01:intron 35.0%
GACGTTCAAGAACAAACAAT+TGG - Chr3:86495693-86495712 MsG0380016677.01.T01:CDS 35.0%
GATGAATTTGTGACAACCAA+AGG + Chr3:86493484-86493503 None:intergenic 35.0%
GGAATCATAGGATATTGGAT+TGG - Chr3:86493181-86493200 MsG0380016677.01.T01:intron 35.0%
GTGATGCATTCACATTTCTA+AGG - Chr3:86494797-86494816 MsG0380016677.01.T01:CDS 35.0%
TAAAGGGACATTATCATTGG+TGG - Chr3:86492848-86492867 MsG0380016677.01.T01:CDS 35.0%
TCTATATAATGTCGATGCAG+TGG - Chr3:86494431-86494450 MsG0380016677.01.T01:intron 35.0%
TGACTATAGAGCATATTGGT+TGG - Chr3:86493155-86493174 MsG0380016677.01.T01:intron 35.0%
TTACAAACGCATCAATGATG+AGG - Chr3:86493022-86493041 MsG0380016677.01.T01:CDS 35.0%
TTATCCTTGGGTTACATAAC+AGG - Chr3:86493771-86493790 MsG0380016677.01.T01:intron 35.0%
TTTGAACGTAGAATGAGAAC+GGG - Chr3:86492873-86492892 MsG0380016677.01.T01:CDS 35.0%
! ATCATGGTCTTGAAATTACG+TGG - Chr3:86495589-86495608 MsG0380016677.01.T01:intron 35.0%
! CCATTTTCAAAATGGCGAAA+CGG - Chr3:86493906-86493925 MsG0380016677.01.T01:intron 35.0%
!! ATAGTGGACATCATTGTAGA+CGG + Chr3:86494684-86494703 None:intergenic 35.0%
!! CCAAAAGCATGCTTTTGTTT+AGG - Chr3:86493705-86493724 MsG0380016677.01.T01:intron 35.0%
!! CCTAAACAAAAGCATGCTTT+TGG + Chr3:86493708-86493727 None:intergenic 35.0%
!! TGGTGGATTAGTATCGTTTA+AGG + Chr3:86492958-86492977 None:intergenic 35.0%
AAAGCATGGGAAGGATTTCA+AGG - Chr3:86492907-86492926 MsG0380016677.01.T01:CDS 40.0%
AAAGTGGTGCAAGTAATGCA+AGG + Chr3:86492984-86493003 None:intergenic 40.0%
AAGAATAAGGAGCAGGAAGA+TGG - Chr3:86495663-86495682 MsG0380016677.01.T01:CDS 40.0%
AAGACCTGTTATGTAACCCA+AGG + Chr3:86493778-86493797 None:intergenic 40.0%
AAGTCGAGCATGATCAGAAA+GGG + Chr3:86495787-86495806 None:intergenic 40.0%
AATGGCGAAACGGTGAAATT+AGG - Chr3:86493916-86493935 MsG0380016677.01.T01:intron 40.0%
AATTACCCGCATAGCATGAT+TGG + Chr3:86494153-86494172 None:intergenic 40.0%
AGCAGTATTTGGCATGTTCA+AGG - Chr3:86494555-86494574 MsG0380016677.01.T01:CDS 40.0%
AGGAAGAGATAAAGGAGTTG+TGG - Chr3:86495020-86495039 MsG0380016677.01.T01:intron 40.0%
AGTTGGAGTGAAGCAGTATT+TGG - Chr3:86494544-86494563 MsG0380016677.01.T01:CDS 40.0%
ATCGTGAGGAAATAGAAGGT+GGG + Chr3:86493964-86493983 None:intergenic 40.0%
ATGGGAAGGATTTCAAGGAT+TGG - Chr3:86492912-86492931 MsG0380016677.01.T01:CDS 40.0%
ATTGGTTGGCAAGGAATCAT+AGG - Chr3:86493169-86493188 MsG0380016677.01.T01:intron 40.0%
CAAGCTGACATAGATGGAAA+TGG - Chr3:86495046-86495065 MsG0380016677.01.T01:intron 40.0%
CATTTCCATCTATGTCAGCT+TGG + Chr3:86495048-86495067 None:intergenic 40.0%
GAGTTGCACTTCAACGATAT+TGG - Chr3:86493843-86493862 MsG0380016677.01.T01:CDS 40.0%
GGAAGAGATAAAGGAGTTGT+GGG - Chr3:86495021-86495040 MsG0380016677.01.T01:intron 40.0%
GGCAAGGAATCATAGGATAT+TGG - Chr3:86493176-86493195 MsG0380016677.01.T01:intron 40.0%
GTAAGACGATACAAAACCCT+GGG + Chr3:86494303-86494322 None:intergenic 40.0%
GTCTACAATGATGTCCACTA+TGG - Chr3:86494683-86494702 MsG0380016677.01.T01:CDS 40.0%
GTTGAGTGAGGAAGAGATAA+AGG - Chr3:86495012-86495031 MsG0380016677.01.T01:intron 40.0%
TAAGTCGAGCATGATCAGAA+AGG + Chr3:86495788-86495807 None:intergenic 40.0%
TAGAATGAGAACGGGTAAGT+GGG - Chr3:86492881-86492900 MsG0380016677.01.T01:CDS 40.0%
TAGACGGTTCACAGTAGTAT+AGG + Chr3:86494668-86494687 None:intergenic 40.0%
TCTACGCAATCAATGACTAG+AGG - Chr3:86495218-86495237 MsG0380016677.01.T01:intron 40.0%
TGTATTGAATTGGGCAAAGG+GGG - Chr3:86493551-86493570 MsG0380016677.01.T01:intron 40.0%
TTGCATCGTGAGGAAATAGA+AGG + Chr3:86493968-86493987 None:intergenic 40.0%
! ACAGTTTGTTTCTCAGTGAC+TGG - Chr3:86494237-86494256 MsG0380016677.01.T01:intron 40.0%
! ATAGAGCATATTGGTTGGCA+AGG - Chr3:86493160-86493179 MsG0380016677.01.T01:intron 40.0%
! ATTTTTCATGCCGGACGTTA+TGG - Chr3:86493517-86493536 MsG0380016677.01.T01:intron 40.0%
! TCATTCTCATGAGTTGAGTG+AGG - Chr3:86495000-86495019 MsG0380016677.01.T01:intron 40.0%
! TGGTGCAATCTTTAGTTTCG+TGG - Chr3:86494703-86494722 MsG0380016677.01.T01:CDS 40.0%
! TTGTTTCTCAGTGACTGGAA+TGG - Chr3:86494242-86494261 MsG0380016677.01.T01:intron 40.0%
!! CCGTTTCGCCATTTTGAAAA+TGG + Chr3:86493909-86493928 None:intergenic 40.0%
!!! TTTGTGAAGGAGTTTTGGGT+AGG - Chr3:86493331-86493350 MsG0380016677.01.T01:intron 40.0%
AGTCACTCTCTCGACAAGTT+GGG + Chr3:86493140-86493159 None:intergenic 45.0%
CAAGTAATGCAAGGTTGTGG+TGG + Chr3:86492975-86492994 None:intergenic 45.0%
CAATGCCAATCATGCTATGC+GGG - Chr3:86494145-86494164 MsG0380016677.01.T01:CDS 45.0%
CATCGTGAGGAAATAGAAGG+TGG + Chr3:86493965-86493984 None:intergenic 45.0%
CCAATGCCAATCATGCTATG+CGG - Chr3:86494144-86494163 MsG0380016677.01.T01:CDS 45.0%
CGACAACAAGAATAAGGAGC+AGG - Chr3:86495656-86495675 MsG0380016677.01.T01:CDS 45.0%
CGTAAGACGATACAAAACCC+TGG + Chr3:86494304-86494323 None:intergenic 45.0%
CTATTATTGGCCAAGGGTGA+AGG - Chr3:86493295-86493314 MsG0380016677.01.T01:intron 45.0%
GAAAAGAGACTTGGAGATGC+TGG - Chr3:86493379-86493398 MsG0380016677.01.T01:intron 45.0%
GCGGGTAATTCAACTCGATA+TGG - Chr3:86494163-86494182 MsG0380016677.01.T01:CDS 45.0%
GTAGAATGAGAACGGGTAAG+TGG - Chr3:86492880-86492899 MsG0380016677.01.T01:CDS 45.0%
GTGCAAGTAATGCAAGGTTG+TGG + Chr3:86492978-86492997 None:intergenic 45.0%
TACAAATTCCTGAGGTCCCA+GGG - Chr3:86494284-86494303 MsG0380016677.01.T01:intron 45.0%
TAGTCACTCTCTCGACAAGT+TGG + Chr3:86493141-86493160 None:intergenic 45.0%
TCAGAAAGGGAGTAGTCTTC+CGG + Chr3:86495774-86495793 None:intergenic 45.0%
TTACAAATTCCTGAGGTCCC+AGG - Chr3:86494283-86494302 MsG0380016677.01.T01:intron 45.0%
! GGTAAGTGGGCAAAAAGCAT+GGG - Chr3:86492894-86492913 MsG0380016677.01.T01:CDS 45.0%
! TTTCTGTGAAGCACTTCGAC+AGG - Chr3:86494852-86494871 MsG0380016677.01.T01:CDS 45.0%
!! AACACATTAGCCTTCACCCT+TGG + Chr3:86493308-86493327 None:intergenic 45.0%
!! TGATTGGCATTGGCTTGAGT+TGG + Chr3:86494137-86494156 None:intergenic 45.0%
AGAGATAGCGTTGCATCGTG+AGG + Chr3:86493978-86493997 None:intergenic 50.0%
AGCAGACAAGCTTGTCTTGC+AGG + Chr3:86495546-86495565 None:intergenic 50.0%
ATACAAAACCCTGGGACCTC+AGG + Chr3:86494295-86494314 None:intergenic 50.0%
CACTGATGCAGATGCTGACA+AGG - Chr3:86494340-86494359 MsG0380016677.01.T01:CDS 50.0%
CAGCAAATCATCTGGGAGCA+CGG + Chr3:86495837-86495856 None:intergenic 50.0%
CATCTACCTTTCTCCACCTC+AGG + Chr3:86495750-86495769 None:intergenic 50.0%
CCGCATAGCATGATTGGCAT+TGG + Chr3:86494147-86494166 None:intergenic 50.0%
CGTGGTTGCAGCAGCAAATA+TGG - Chr3:86495607-86495626 MsG0380016677.01.T01:intron 50.0%
CTGAGGTGGAGAAAGGTAGA+TGG - Chr3:86495748-86495767 MsG0380016677.01.T01:CDS 50.0%
GCGAAACGGTGAAATTAGGC+AGG - Chr3:86493920-86493939 MsG0380016677.01.T01:intron 50.0%
GGGTAAGTGGGCAAAAAGCA+TGG - Chr3:86492893-86492912 MsG0380016677.01.T01:CDS 50.0%
GTTAGTCACCGCAATCATCG+GGG - Chr3:86494454-86494473 MsG0380016677.01.T01:intron 50.0%
TACCTTTCTCCACCTCAGGA+GGG + Chr3:86495746-86495765 None:intergenic 50.0%
TGGGTCCAAGCTGACATAGA+TGG - Chr3:86495040-86495059 MsG0380016677.01.T01:intron 50.0%
! AGTGGGCAAAAAGCATGGGA+AGG - Chr3:86492898-86492917 MsG0380016677.01.T01:CDS 50.0%
! GGTTAGTCACCGCAATCATC+GGG - Chr3:86494453-86494472 MsG0380016677.01.T01:intron 50.0%
! TGGGAGCACGGCATTCTTAT+CGG + Chr3:86495825-86495844 None:intergenic 50.0%
!! GGGTTAGTCACCGCAATCAT+CGG - Chr3:86494452-86494471 MsG0380016677.01.T01:intron 50.0%
!!! AGTTTTGTTCCCTCCTGAGG+TGG - Chr3:86495734-86495753 MsG0380016677.01.T01:CDS 50.0%
!!! TGCAGTTTTGTTCCCTCCTG+AGG - Chr3:86495731-86495750 MsG0380016677.01.T01:CDS 50.0%
AGGACGAACAACCGTGGAGA+TGG - Chr3:86493424-86493443 MsG0380016677.01.T01:intron 55.0%
CTACCTTTCTCCACCTCAGG+AGG + Chr3:86495747-86495766 None:intergenic 55.0%
CTTGGAAGGACGAACAACCG+TGG - Chr3:86493418-86493437 MsG0380016677.01.T01:intron 55.0%
GAACGCGCATACCATCTCCA+CGG + Chr3:86493438-86493457 None:intergenic 55.0%
GACTGGAATGGAAGCAAGCG+TGG - Chr3:86494254-86494273 MsG0380016677.01.T01:intron 55.0%
GGTGGAGAAAGGTAGATGGC+CGG - Chr3:86495752-86495771 MsG0380016677.01.T01:CDS 55.0%
TTCCCTCCTGAGGTGGAGAA+AGG - Chr3:86495741-86495760 MsG0380016677.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr3 gene 86492810 86495857 86492810 ID=MsG0380016677.01;Name=MsG0380016677.01
Chr3 mRNA 86492810 86495857 86492810 ID=MsG0380016677.01.T01;Parent=MsG0380016677.01;Name=MsG0380016677.01.T01;_AED=0.33;_eAED=0.33;_QI=0|0|0|1|1|1|10|0|477
Chr3 exon 86495624 86495857 86495624 ID=MsG0380016677.01.T01:exon:22311;Parent=MsG0380016677.01.T01
Chr3 exon 86495428 86495532 86495428 ID=MsG0380016677.01.T01:exon:22310;Parent=MsG0380016677.01.T01
Chr3 exon 86495222 86495327 86495222 ID=MsG0380016677.01.T01:exon:22309;Parent=MsG0380016677.01.T01
Chr3 exon 86494654 86494874 86494654 ID=MsG0380016677.01.T01:exon:22308;Parent=MsG0380016677.01.T01
Chr3 exon 86494501 86494577 86494501 ID=MsG0380016677.01.T01:exon:22307;Parent=MsG0380016677.01.T01
Chr3 exon 86494306 86494414 86494306 ID=MsG0380016677.01.T01:exon:22306;Parent=MsG0380016677.01.T01
Chr3 exon 86494091 86494216 86494091 ID=MsG0380016677.01.T01:exon:22305;Parent=MsG0380016677.01.T01
Chr3 exon 86493794 86493901 86493794 ID=MsG0380016677.01.T01:exon:22304;Parent=MsG0380016677.01.T01
Chr3 exon 86493574 86493681 86493574 ID=MsG0380016677.01.T01:exon:22303;Parent=MsG0380016677.01.T01
Chr3 exon 86492810 86493049 86492810 ID=MsG0380016677.01.T01:exon:22302;Parent=MsG0380016677.01.T01
Chr3 CDS 86495624 86495857 86495624 ID=MsG0380016677.01.T01:cds;Parent=MsG0380016677.01.T01
Chr3 CDS 86495428 86495532 86495428 ID=MsG0380016677.01.T01:cds;Parent=MsG0380016677.01.T01
Chr3 CDS 86495222 86495327 86495222 ID=MsG0380016677.01.T01:cds;Parent=MsG0380016677.01.T01
Chr3 CDS 86494654 86494874 86494654 ID=MsG0380016677.01.T01:cds;Parent=MsG0380016677.01.T01
Chr3 CDS 86494501 86494577 86494501 ID=MsG0380016677.01.T01:cds;Parent=MsG0380016677.01.T01
Chr3 CDS 86494306 86494414 86494306 ID=MsG0380016677.01.T01:cds;Parent=MsG0380016677.01.T01
Chr3 CDS 86494091 86494216 86494091 ID=MsG0380016677.01.T01:cds;Parent=MsG0380016677.01.T01
Chr3 CDS 86493794 86493901 86493794 ID=MsG0380016677.01.T01:cds;Parent=MsG0380016677.01.T01
Chr3 CDS 86493574 86493681 86493574 ID=MsG0380016677.01.T01:cds;Parent=MsG0380016677.01.T01
Chr3 CDS 86492810 86493049 86492810 ID=MsG0380016677.01.T01:cds;Parent=MsG0380016677.01.T01
Gene Sequence

>MsG0380016677.01.T01

ATGTTTATGATCATAATTGATTATTGTTGTATCACATATAAAGGGACATTATCATTGGTGGGTTTTGAACGTAGAATGAGAACGGGTAAGTGGGCAAAAAGCATGGGAAGGATTTCAAGGATTGGAAGTTTTGCAATTGCTTCTTCCTTAAACGATACTAATCCACCACAACCTTGCATTACTTGCACCACTTTTAACATTCTTGCTCCTATTTACAAACGCATCAATGATGAGGACCCAACTTGTCGAGAGAGTGACTATAGAGCATATTGGTTGGCAAGGAATCATAGGATATTGGATTGGCTTTTGAATGAAAACTCTTCTATTATTTGTCTTCAGGAGTTTTGGGTAGGAAATGAAGAGCTCGTTAATTTGTATGAAAAGAGACTTGGAGATGCTGGTTATGTTAGTTTCAAACTTGGAAGGACGAACAACCGTGGAGATGGTCTTTTAATAGCAGTGCAAACGGAATACTTTAACATTTTCAATTATAAGGAGTTGCACTTCAACGATATTGGTGATCGTGTAGCTCAACTGTTACATGTTGAACTAGTCTTTCCATTTTCAAAATGGCGAAACGGTGAAATTAGGCAGGAAATTCTTATTGTTAACACCCACCTTCTATTTCCTCACGATGCAACGCTATCTCTTGTACGATTGAAACAGGTCTATAAGATACTTCAATATGTAGAATCTTATCAAAATGACTTCCAACTCAAGCCAATGCCAATCATGCTATGCGGTGACTGGAATGGAAGCAAGCGTGGACATGTTTACAAATTCCTGAGGTCCCAGGGTTTTGTATCGTCTTACGATACTGCACATCAATACACTGATGCAGATGCTGACAAGTGGGTTAGTCACCGCAATCATCGGGGAAATATATGTGCTGTTGATTTTATTTGGCTTCTAAATCCTGACAAATATCGAAAATTACTAAAAGCAAGTTGGAGTGAAGCAGTATTTGGCATGTTCAAGGATCTAGTGAGACGAGCTTCACTGACAGAAAGTGATGCATTCACATTTCTAAGGGCCGAGAATGAAGATTGTATTACGTATTCTGGTTTCTGTGAAGCACTTCGACAGCTCAATTTAATTGGTCATTCTCATGAGTTGAGTGAGGAAGAGATAAAGGAGTTGTGGGTCCAAGCTGACATAGATGGAAATGGTGTTCTTGACTATAAAGAATTTCTGCAGCAAATATGGATTTCAACTGTTTTAGATCAAAGAGACGACAACAAGAATAAGGAGCAGGAAGATGGTTCAAATGACGTTCAAGAACAAACAATTGGTTTTAGTGTAAAAAATGCAGTTTTGTTCCCTCCTGAGGTGGAGAAAGGTAGATGGCCGGAAGACTACTCCCTTTCTGATCATGCTCGACTTACTGTTGTGTTTTCACCGATAAGAATGCCGTGCTCCCAGATGATTTGCTGA
Protein sequence

>MsG0380016677.01.T01

MFMIIIDYCCITYKGTLSLVGFERRMRTGKWAKSMGRISRIGSFAIASSLNDTNPPQPCITCTTFNILAPIYKRINDEDPTCRESDYRAYWLARNHRILDWLLNENSSIICLQEFWVGNEELVNLYEKRLGDAGYVSFKLGRTNNRGDGLLIAVQTEYFNIFNYKELHFNDIGDRVAQLLHVELVFPFSKWRNGEIRQEILIVNTHLLFPHDATLSLVRLKQVYKILQYVESYQNDFQLKPMPIMLCGDWNGSKRGHVYKFLRSQGFVSSYDTAHQYTDADADKWVSHRNHRGNICAVDFIWLLNPDKYRKLLKASWSEAVFGMFKDLVRRASLTESDAFTFLRAENEDCITYSGFCEALRQLNLIGHSHELSEEEIKELWVQADIDGNGVLDYKEFLQQIWISTVLDQRDDNKNKEQEDGSNDVQEQTIGFSVKNAVLFPPEVEKGRWPEDYSLSDHARLTVVFSPIRMPCSQMIC*