AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038305.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038305.01.T01 MTR_7g050870 97.600 375 9 0 1 375 180 554 0.0 763
MsG0780038305.01.T01 MTR_7g050950 85.867 375 52 1 1 375 180 553 0.0 679
MsG0780038305.01.T01 MTR_7g050980 85.067 375 56 0 1 375 181 555 0.0 673
MsG0780038305.01.T01 MTR_7g108905 56.579 380 158 4 1 375 179 556 1.64e-150 436
MsG0780038305.01.T01 MTR_2g044880 55.978 368 155 4 9 375 164 525 1.08e-145 423
MsG0780038305.01.T01 MTR_8g023310 59.155 355 139 3 22 375 240 589 4.08e-145 424
MsG0780038305.01.T01 MTR_8g104645 56.395 344 144 3 36 375 31 372 3.64e-142 408
MsG0780038305.01.T01 MTR_8g104655 56.686 344 143 3 36 375 200 541 2.36e-140 410
MsG0780038305.01.T01 MTR_1g008140 51.031 388 172 6 1 375 225 607 3.97e-140 412
MsG0780038305.01.T01 MTR_4g087980 54.255 376 164 5 3 375 146 516 1.67e-139 407
MsG0780038305.01.T01 MTR_3g091380 54.734 338 150 2 39 375 262 597 4.82e-139 409
MsG0780038305.01.T01 MTR_4g025690 58.754 337 130 5 40 375 185 513 1.38e-133 392
MsG0780038305.01.T01 MTR_4g025730 59.050 337 128 6 40 375 182 509 5.70e-132 387
MsG0780038305.01.T01 MTR_7g053360 53.369 371 162 6 7 375 166 527 1.63e-130 384
MsG0780038305.01.T01 MTR_3g008640 51.989 377 167 6 1 375 163 527 6.54e-130 383
MsG0780038305.01.T01 MTR_3g033690 52.520 377 165 7 1 375 162 526 8.41e-130 382
MsG0780038305.01.T01 MTR_3g008700 52.830 371 164 6 7 375 166 527 1.40e-129 382
MsG0780038305.01.T01 MTR_4g087970 52.149 349 163 2 27 375 173 517 4.02e-129 380
MsG0780038305.01.T01 MTR_4g025670 55.455 330 139 4 51 375 163 489 1.24e-128 378
MsG0780038305.01.T01 MTR_3g008720 51.459 377 169 6 1 375 163 527 5.42e-128 378
MsG0780038305.01.T01 MTR_4g035980 52.663 338 155 4 40 375 205 539 5.42e-123 365
MsG0780038305.01.T01 MTR_8g042900 52.819 337 149 5 41 375 253 581 4.99e-121 362
MsG0780038305.01.T01 MTR_7g112580 50.843 356 157 5 24 375 201 542 3.12e-120 358
MsG0780038305.01.T01 MTR_1g083520 53.529 340 146 6 44 375 193 528 2.23e-119 356
MsG0780038305.01.T01 MTR_7g108900 50.980 357 153 5 37 375 208 560 3.74e-119 357
MsG0780038305.01.T01 MTR_4g124520 48.649 333 167 2 43 375 193 521 1.28e-118 354
MsG0780038305.01.T01 MTR_1g054880 52.553 333 148 5 49 375 230 558 8.03e-118 353
MsG0780038305.01.T01 MTR_1g088020 52.239 335 148 5 49 375 225 555 1.26e-117 352
MsG0780038305.01.T01 MTR_3g010780 51.057 331 155 3 41 371 247 570 7.71e-117 351
MsG0780038305.01.T01 MTR_7g108890 50.000 362 160 7 23 375 213 562 2.83e-116 349
MsG0780038305.01.T01 MTR_7g108875 49.863 365 160 6 27 375 207 564 8.37e-115 345
MsG0780038305.01.T01 MTR_1g088225 51.360 331 147 6 49 371 225 549 1.12e-111 337
MsG0780038305.01.T01 MTR_3g010770 50.893 336 157 4 45 375 243 575 3.00e-111 337
MsG0780038305.01.T01 MTR_2g044810 45.028 362 190 4 14 375 182 534 5.74e-111 335
MsG0780038305.01.T01 MTR_8g042910 50.448 335 157 4 47 375 281 612 5.37e-110 335
MsG0780038305.01.T01 MTR_4g124550 49.405 336 164 4 41 375 263 593 5.53e-110 334
MsG0780038305.01.T01 MTR_8g023150 47.467 375 187 4 1 371 210 578 1.20e-109 333
MsG0780038305.01.T01 MTR_0458s0030 56.228 281 114 5 99 375 39 314 5.08e-107 317
MsG0780038305.01.T01 MTR_1g088040 56.228 281 114 5 99 375 39 314 5.08e-107 317
MsG0780038305.01.T01 MTR_1g086210 46.491 342 175 2 40 375 230 569 1.34e-106 325
MsG0780038305.01.T01 MTR_8g104580 47.674 344 141 5 36 375 192 500 1.56e-106 322
MsG0780038305.01.T01 MTR_1g086190 44.118 374 200 6 4 375 197 563 1.03e-104 320
MsG0780038305.01.T01 MTR_1g083510 44.444 342 181 4 39 374 244 582 1.43e-100 310
MsG0780038305.01.T01 MTR_2g044660 47.917 336 164 6 41 375 307 632 3.11e-100 310
MsG0780038305.01.T01 MTR_0618s0020 59.565 230 91 1 146 375 1 228 6.16e-100 296
MsG0780038305.01.T01 MTR_1g083470 44.478 335 179 5 41 371 235 566 1.11e-99 307
MsG0780038305.01.T01 MTR_1g083500 44.478 335 179 5 41 371 235 566 1.11e-99 307
MsG0780038305.01.T01 MTR_7g112590 45.481 343 180 5 38 374 241 582 1.58e-99 307
MsG0780038305.01.T01 MTR_4g005170 44.248 339 182 5 37 371 236 571 3.13e-98 305
MsG0780038305.01.T01 MTR_1g083490 43.529 340 185 5 37 372 236 572 3.70e-98 303
MsG0780038305.01.T01 MTR_4g005180 43.658 339 184 5 37 371 218 553 4.46e-97 300
MsG0780038305.01.T01 MTR_7g110440 44.411 331 171 3 40 365 231 553 5.85e-96 297
MsG0780038305.01.T01 MTR_7g110490 44.923 325 172 2 40 359 231 553 2.52e-94 293
MsG0780038305.01.T01 MTR_7g110510 44.923 325 172 2 40 359 231 553 2.52e-94 293
MsG0780038305.01.T01 MTR_7g110560 42.151 344 189 4 37 375 211 549 4.95e-93 289
MsG0780038305.01.T01 MTR_4g120280 45.687 313 165 4 40 352 236 543 7.10e-91 284
MsG0780038305.01.T01 MTR_2g436040 41.935 341 188 4 36 371 207 542 4.10e-90 283
MsG0780038305.01.T01 MTR_4g120290 42.522 341 185 5 40 374 236 571 9.16e-90 281
MsG0780038305.01.T01 MTR_8g093460 44.745 333 157 9 59 374 228 550 1.03e-89 281
MsG0780038305.01.T01 MTR_2g436050 43.658 339 181 5 41 374 230 563 1.66e-87 275
MsG0780038305.01.T01 MTR_8g088610 41.667 336 188 5 38 371 43 372 1.78e-86 266
MsG0780038305.01.T01 MTR_2g044810 48.627 255 128 2 121 375 214 465 1.81e-86 270
MsG0780038305.01.T01 MTR_7g110420 41.071 336 181 4 40 364 231 560 4.29e-84 267
MsG0780038305.01.T01 MTR_3g095920 41.979 374 175 11 24 374 209 563 3.98e-83 264
MsG0780038305.01.T01 MTR_5g083620 38.279 337 203 4 41 375 23 356 1.92e-82 256
MsG0780038305.01.T01 MTR_7g110430 39.275 331 154 4 40 365 231 519 8.83e-77 246
MsG0780038305.01.T01 MTR_7g107180 38.924 316 179 4 61 375 5 307 1.15e-70 224
MsG0780038305.01.T01 MTR_2g105560 38.095 315 179 4 62 375 40 339 8.63e-69 220
MsG0780038305.01.T01 MTR_0458s0010 40.774 336 140 13 49 371 225 514 9.94e-68 222
MsG0780038305.01.T01 MTR_2g039530 38.889 306 169 7 38 341 29 318 1.26e-61 201
MsG0780038305.01.T01 MTR_7g111560 37.231 325 184 9 63 375 240 556 6.84e-55 189
MsG0780038305.01.T01 MTR_6g024165 35.144 313 173 9 63 364 41 334 3.99e-51 174
MsG0780038305.01.T01 MTR_6g012800 32.353 306 181 7 63 358 6 295 1.02e-50 172
MsG0780038305.01.T01 MTR_1g086540 34.286 315 180 7 60 364 47 344 3.33e-50 172
MsG0780038305.01.T01 MTR_7g092780 33.227 313 185 6 63 365 90 388 5.78e-48 167
MsG0780038305.01.T01 MTR_6g088810 35.410 305 169 7 71 364 90 377 1.23e-46 163
MsG0780038305.01.T01 MTR_8g102380 33.861 316 179 7 64 366 81 379 8.58e-45 159
MsG0780038305.01.T01 MTR_7g011530 31.449 283 171 5 65 337 8 277 3.59e-43 152
MsG0780038305.01.T01 MTR_5g083590 30.063 316 168 4 61 375 5 268 7.96e-43 150
MsG0780038305.01.T01 MTR_5g095490 32.686 309 179 7 69 365 67 358 8.55e-42 150
MsG0780038305.01.T01 MTR_4g124740 31.210 314 178 9 63 365 54 340 4.52e-40 145
MsG0780038305.01.T01 MTR_4g074290 32.476 311 181 9 63 364 71 361 7.92e-40 145
MsG0780038305.01.T01 MTR_6g042660 30.496 282 171 6 61 337 35 296 4.09e-39 142
MsG0780038305.01.T01 MTR_7g102600 30.312 320 196 8 58 366 92 395 8.46e-39 143
MsG0780038305.01.T01 MTR_8g102380 35.115 262 145 5 64 312 81 330 2.74e-38 140
MsG0780038305.01.T01 MTR_0009s0350 30.641 359 205 13 23 364 30 361 5.53e-38 140
MsG0780038305.01.T01 MTR_0009s0340 30.641 359 205 13 23 364 30 361 5.53e-38 140
MsG0780038305.01.T01 MTR_2g073390 31.613 310 185 9 63 364 71 361 8.36e-38 139
MsG0780038305.01.T01 MTR_1g033050 30.657 274 168 5 71 337 26 284 1.42e-36 135
MsG0780038305.01.T01 MTR_5g093970 31.068 309 188 7 63 366 43 331 1.84e-36 135
MsG0780038305.01.T01 MTR_6g042690 30.662 287 169 6 61 337 37 303 4.33e-36 134
MsG0780038305.01.T01 MTR_5g012600 27.848 316 201 6 63 367 63 362 1.49e-35 134
MsG0780038305.01.T01 MTR_5g088300 27.864 323 211 6 50 372 24 324 7.53e-34 128
MsG0780038305.01.T01 MTR_5g088280 28.065 310 197 7 59 366 35 320 3.49e-31 121
MsG0780038305.01.T01 MTR_5g088290 26.974 304 201 5 63 366 48 330 3.02e-30 119
MsG0780038305.01.T01 MTR_2g033970 27.914 326 211 7 45 364 39 346 7.46e-29 115
MsG0780038305.01.T01 MTR_4g051810 26.814 317 211 6 50 366 24 319 9.07e-27 108
MsG0780038305.01.T01 MTR_8g036225 27.465 284 179 6 63 337 33 298 1.49e-25 105
MsG0780038305.01.T01 MTR_6g025590 35.714 168 100 4 63 222 49 216 4.04e-22 94.4
MsG0780038305.01.T01 MTR_2g436600 26.300 327 206 9 45 364 38 336 1.80e-21 94.4
MsG0780038305.01.T01 MTR_2g436070 46.316 95 49 1 40 134 229 321 4.07e-20 91.3
MsG0780038305.01.T01 MTR_0408s0030 38.000 100 51 2 238 337 35 123 2.53e-17 78.6
MsG0780038305.01.T01 MTR_4g130790 31.609 174 108 4 91 257 53 222 3.81e-15 75.1
MsG0780038305.01.T01 MTR_6g024200 33.594 128 68 4 239 364 164 276 7.52e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038305.01.T01 AT1G11580 68.449 374 109 4 5 375 190 557 0.0 524
MsG0780038305.01.T01 AT1G11580 68.449 374 109 4 5 375 211 578 0.0 523
MsG0780038305.01.T01 AT3G43270 56.410 351 142 4 26 375 185 525 2.60e-139 407
MsG0780038305.01.T01 AT5G53370 51.330 376 177 3 4 375 212 585 1.53e-138 407
MsG0780038305.01.T01 AT5G53370 51.330 376 177 3 4 375 248 621 2.39e-138 408
MsG0780038305.01.T01 AT3G49220 54.227 343 154 2 34 375 256 596 9.70e-136 400
MsG0780038305.01.T01 AT3G14310 59.226 336 133 2 40 375 261 592 1.52e-135 399
MsG0780038305.01.T01 AT3G49220 54.227 343 154 2 34 375 301 641 2.46e-135 400
MsG0780038305.01.T01 AT4G33220 52.975 353 160 3 24 375 55 402 1.16e-132 385
MsG0780038305.01.T01 AT1G53830 59.036 332 132 2 40 371 256 583 1.82e-132 391
MsG0780038305.01.T01 AT4G33220 52.975 353 160 3 24 375 176 523 1.12e-131 387
MsG0780038305.01.T01 AT3G59010 57.988 338 127 5 39 375 205 528 4.29e-131 386
MsG0780038305.01.T01 AT2G45220 53.989 376 151 9 1 375 157 511 3.04e-129 380
MsG0780038305.01.T01 AT4G02320 48.663 374 180 4 1 371 150 514 9.28e-127 374
MsG0780038305.01.T01 AT4G02300 48.930 374 180 4 4 375 168 532 3.66e-126 374
MsG0780038305.01.T01 AT3G60730 53.605 319 143 2 60 375 203 519 6.59e-125 370
MsG0780038305.01.T01 AT2G43050 54.142 338 142 4 40 375 190 516 8.53e-124 367
MsG0780038305.01.T01 AT4G02330 54.630 324 136 6 56 375 255 571 2.52e-121 362
MsG0780038305.01.T01 AT1G02810 55.205 317 134 4 63 375 265 577 5.09e-121 362
MsG0780038305.01.T01 AT5G51490 51.183 338 159 2 40 375 203 536 5.59e-121 360
MsG0780038305.01.T01 AT5G04960 54.180 323 142 2 49 371 244 560 1.10e-120 360
MsG0780038305.01.T01 AT2G26440 48.118 372 185 3 9 375 179 547 1.02e-119 357
MsG0780038305.01.T01 AT1G23200 51.873 347 150 4 31 375 223 554 2.86e-119 357
MsG0780038305.01.T01 AT5G51500 48.670 376 184 4 2 375 172 540 2.71e-118 353
MsG0780038305.01.T01 AT5G27870 48.387 341 171 3 36 375 226 562 7.36e-118 358
MsG0780038305.01.T01 AT3G05620 53.687 339 138 6 41 375 218 541 1.06e-117 352
MsG0780038305.01.T01 AT3G47400 48.128 374 187 3 4 375 226 594 9.66e-116 349
MsG0780038305.01.T01 AT1G11590 46.684 377 192 5 1 375 155 524 1.22e-114 344
MsG0780038305.01.T01 AT4G03930 45.789 380 191 5 1 375 155 524 2.01e-114 343
MsG0780038305.01.T01 AT3G27980 46.419 377 189 6 1 375 132 497 8.90e-114 340
MsG0780038305.01.T01 AT2G47550 51.929 337 152 5 45 375 226 558 1.47e-113 342
MsG0780038305.01.T01 AT3G10710 50.765 327 154 3 49 375 242 561 1.10e-112 340
MsG0780038305.01.T01 AT2G26450 46.532 346 179 5 32 375 270 611 2.28e-110 335
MsG0780038305.01.T01 AT1G53840 50.602 332 151 5 39 369 262 581 1.36e-109 333
MsG0780038305.01.T01 AT5G49180 47.761 335 168 5 40 372 238 567 3.05e-109 332
MsG0780038305.01.T01 AT3G05610 46.334 341 172 5 40 375 231 565 1.43e-108 333
MsG0780038305.01.T01 AT4G33230 49.107 336 165 5 42 375 275 606 2.47e-108 330
MsG0780038305.01.T01 AT5G04970 47.554 368 177 5 13 375 264 620 5.98e-107 327
MsG0780038305.01.T01 AT4G00190 51.713 321 143 6 55 371 158 470 4.17e-106 320
MsG0780038305.01.T01 AT5G20860 47.774 337 167 5 40 375 210 538 5.26e-106 322
MsG0780038305.01.T01 AT3G14300 47.443 352 174 4 14 361 610 954 9.23e-106 333
MsG0780038305.01.T01 AT3G10720 49.245 331 160 4 50 375 288 615 2.46e-105 323
MsG0780038305.01.T01 AT1G11370 58.607 244 101 0 60 303 43 286 2.58e-104 309
MsG0780038305.01.T01 AT3G06830 45.104 337 176 5 40 371 232 564 2.52e-102 313
MsG0780038305.01.T01 AT4G15980 43.467 375 204 5 2 371 327 698 3.52e-99 309
MsG0780038305.01.T01 AT4G15980 43.467 375 204 5 2 371 337 708 7.18e-99 308
MsG0780038305.01.T01 AT3G10720 53.435 262 119 2 114 375 1 259 1.18e-96 289
MsG0780038305.01.T01 AT5G20860 43.789 322 144 4 40 360 210 495 3.84e-85 268
MsG0780038305.01.T01 AT2G47040 42.197 346 186 5 40 375 254 595 1.63e-84 268
MsG0780038305.01.T01 AT2G47030 40.401 349 191 5 40 375 244 588 1.83e-83 265
MsG0780038305.01.T01 AT5G09760 41.085 387 184 12 5 363 176 546 1.30e-82 262
MsG0780038305.01.T01 AT5G09760 41.131 389 185 12 3 363 200 572 1.76e-82 262
MsG0780038305.01.T01 AT3G62170 41.176 357 185 5 40 375 236 588 2.01e-82 263
MsG0780038305.01.T01 AT5G64640 42.560 336 162 12 53 367 276 601 2.42e-75 244
MsG0780038305.01.T01 AT1G44980 42.609 230 126 4 1 227 16 242 2.04e-53 177
MsG0780038305.01.T01 AT1G05310 33.333 321 184 6 58 365 86 389 5.59e-48 167
MsG0780038305.01.T01 AT3G29090 32.281 285 170 4 63 337 7 278 1.52e-47 164
MsG0780038305.01.T01 AT5G19730 34.185 313 178 7 64 365 87 382 3.44e-45 160
MsG0780038305.01.T01 AT2G21610 31.475 305 185 7 63 365 51 333 5.11e-42 150
MsG0780038305.01.T01 AT2G21610 31.475 305 185 7 63 365 56 338 6.20e-42 150
MsG0780038305.01.T01 AT2G36710 30.408 319 199 7 60 369 86 390 2.35e-41 150
MsG0780038305.01.T01 AT2G36700 30.492 305 192 5 65 364 44 333 3.94e-39 142
MsG0780038305.01.T01 AT5G61680 29.060 351 218 9 24 364 29 358 4.74e-39 143
MsG0780038305.01.T01 AT2G19150 30.303 330 198 8 53 371 31 339 3.45e-38 140
MsG0780038305.01.T01 AT5G07430 30.323 310 187 8 63 364 67 355 1.65e-37 139
MsG0780038305.01.T01 AT5G55590 30.721 319 192 8 59 365 78 379 6.43e-37 137
MsG0780038305.01.T01 AT5G07420 29.808 312 186 9 63 364 67 355 2.16e-35 133
MsG0780038305.01.T01 AT1G69940 29.703 303 183 9 71 364 74 355 8.92e-35 131
MsG0780038305.01.T01 AT5G55590 31.923 260 153 6 59 306 78 325 1.08e-34 130
MsG0780038305.01.T01 AT5G18990 30.420 286 173 6 63 337 29 299 1.22e-34 130
MsG0780038305.01.T01 AT5G47500 27.157 313 201 6 63 364 61 357 3.52e-34 130
MsG0780038305.01.T01 AT5G07410 29.373 303 184 9 71 364 74 355 6.19e-34 129
MsG0780038305.01.T01 AT3G17060 26.722 363 227 10 11 364 4 336 1.52e-33 127
MsG0780038305.01.T01 AT2G19150 30.483 269 164 5 53 312 31 285 5.04e-33 125
MsG0780038305.01.T01 AT3G24130 28.667 300 187 7 50 337 20 304 6.65e-32 123
MsG0780038305.01.T01 AT5G26810 26.316 342 209 7 51 366 11 335 3.23e-30 119
MsG0780038305.01.T01 AT2G47280 30.000 290 175 8 59 337 31 303 1.66e-28 114
MsG0780038305.01.T01 AT3G49220 40.800 125 70 2 34 157 301 422 1.82e-25 107

Find 145 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCTGAGAATCTCGTTTA+TGG 0.106683 7:-43852781 None:intergenic
GGGCTGCAAGTTTGCTCTTC+TGG 0.186460 7:-43852095 None:intergenic
GCAACTGCCTGGTGCTTCTC+TGG 0.201967 7:-43851919 None:intergenic
TGTTGTGATGAGAAATAATA+AGG 0.234584 7:-43850908 None:intergenic
TATTGGTACACGCTTGTTAA+AGG 0.245656 7:-43852567 None:intergenic
GTATGTTATCTATGTGAAAA+AGG 0.250218 7:+43851614 MsG0780038305.01.T01:CDS
TACCGTGACTCCTACATTAC+TGG 0.252009 7:+43852033 MsG0780038305.01.T01:CDS
GAATGACTGTGAGGAATTAA+TGG 0.257485 7:+43851175 MsG0780038305.01.T01:five_prime_UTR
GGTACCGTTGACTTTATCTT+TGG 0.262515 7:+43852054 MsG0780038305.01.T01:CDS
ATCTCGTTTATGGATTAAAA+AGG 0.277378 7:-43852771 None:intergenic
TACAAAGAAAACATAGAAAT+TGG 0.293694 7:+43851642 MsG0780038305.01.T01:CDS
ATTTGTCCATGGATAGAGTT+TGG 0.300373 7:+43851198 MsG0780038305.01.T01:five_prime_UTR
CAATTTGTGGTCTTTGGTAT+TGG 0.300992 7:-43851042 None:intergenic
TTTGAAAGCATCTAATTATA+CGG 0.301691 7:-43852910 None:intergenic
TCTCTGGGCCTGCCGTGTTT+TGG 0.305136 7:-43851903 None:intergenic
TCCCATTCAGCCCATCCTGC+TGG 0.307590 7:-43852330 None:intergenic
TGTACTCAATTTGTGGTCTT+TGG 0.308331 7:-43851048 None:intergenic
GAGAGATTGAAGAAGGAGAT+AGG 0.326855 7:-43850933 None:intergenic
GGTTTATAGCTCAGGACATT+AGG 0.333498 7:+43851878 MsG0780038305.01.T01:CDS
AAGTAAGGATCGAAGGCTTT+TGG 0.339991 7:+43851479 MsG0780038305.01.T01:CDS
GGCAGCTTAAATTTCATAGA+TGG 0.343017 7:+43851723 MsG0780038305.01.T01:CDS
TCGAATGTGTTCAGACGATT+TGG 0.344198 7:-43851087 None:intergenic
TAATATATAAAACTGGAAAT+TGG 0.346524 7:-43852734 None:intergenic
GAAGTTGCGGTGTTCTGGTT+TGG 0.352786 7:-43852171 None:intergenic
CAAGTTTATTTCCAGACATT+AGG 0.357594 7:-43852688 None:intergenic
AAGTTGCGGTGTTCTGGTTT+GGG 0.358889 7:-43852170 None:intergenic
GAATTGAAGTTGCGGTGTTC+TGG 0.361783 7:-43852176 None:intergenic
ACTTGCTTGGATGGATTAGA+AGG 0.372347 7:+43851306 MsG0780038305.01.T01:five_prime_UTR
AGCTCATCCAAGGCAATGTT+TGG 0.376386 7:+43852499 MsG0780038305.01.T01:CDS
CGTTATGGAGAGTGATCTTC+AGG 0.379571 7:+43851341 MsG0780038305.01.T01:exon
GCAAAACGTCTGAAACATAT+TGG 0.385431 7:-43852584 None:intergenic
AGGTTCATCTCGGGTCGTTA+TGG 0.406017 7:+43851326 MsG0780038305.01.T01:exon
TACCTTGCCGTACCTTTGTC+TGG 0.406593 7:-43851594 None:intergenic
ACTGTTGTAATATATAAAAC+TGG 0.407645 7:-43852741 None:intergenic
TTGTTAAAGGGCATTTCTAC+AGG 0.409969 7:-43852554 None:intergenic
TTTGTAGCTGCTGTTGGAGA+TGG 0.411988 7:+43851856 MsG0780038305.01.T01:intron
AGGCCAAGTCACTCTCTTAC+TGG 0.413537 7:-43852424 None:intergenic
ATTGGTACACGCTTGTTAAA+GGG 0.413839 7:-43852566 None:intergenic
GTCTTCAGTTGGGGACATAA+AGG 0.418020 7:+43851503 MsG0780038305.01.T01:CDS
CAACTGCCTGGTGCTTCTCT+GGG 0.418631 7:-43851918 None:intergenic
TCCATCTTGGGTGACAAGTA+AGG 0.423120 7:+43851464 MsG0780038305.01.T01:CDS
ATGAATCCGTCATTAGCCTT+TGG 0.427354 7:-43851417 None:intergenic
TTTGTCCATGGATAGAGTTT+GGG 0.430827 7:+43851199 MsG0780038305.01.T01:five_prime_UTR
CACTAACCATGCAACTTGCT+TGG 0.434494 7:+43851293 MsG0780038305.01.T01:five_prime_UTR
ACTAGTCACTAGTATCAGTA+TGG 0.437694 7:+43850791 MsG0780038305.01.T01:five_prime_UTR
AACCATGCAACTTGCTTGGA+TGG 0.443880 7:+43851297 MsG0780038305.01.T01:five_prime_UTR
GGCCAATGTTGTGGTGGCTC+AGG 0.444253 7:+43851524 MsG0780038305.01.T01:CDS
TTCAAAGCAATTTCCTCTCT+AGG 0.446243 7:-43851155 None:intergenic
ACCCAGCAGGATGGGCTGAA+TGG 0.448106 7:+43852328 MsG0780038305.01.T01:CDS
TGAATGGGATGCCGCGAGTA+AGG 0.450233 7:+43852344 MsG0780038305.01.T01:CDS
GCTTGTCTAGCAAAGATTGT+TGG 0.453804 7:-43850818 None:intergenic
CCCATTCAGCCCATCCTGCT+GGG 0.455581 7:-43852329 None:intergenic
TTTCTACAGGCCTTCAATGA+AGG 0.457490 7:-43852541 None:intergenic
GTCCTGGAGTATTTCTTCCA+TGG 0.458058 7:-43852270 None:intergenic
TGGAGATGGGTTTATAGCTC+AGG 0.458718 7:+43851870 MsG0780038305.01.T01:CDS
ATATGAGTGTACTCAATTTG+TGG 0.460078 7:-43851055 None:intergenic
TCCTGGAGTATTTCTTCCAT+GGG 0.462761 7:-43852269 None:intergenic
AGAGCATGCTCACACAGATT+AGG 0.468844 7:-43850963 None:intergenic
TTGTAGCTGCTGTTGGAGAT+GGG 0.474986 7:+43851857 MsG0780038305.01.T01:intron
ACAGGGGTGGCCTTCATTGA+AGG 0.476471 7:+43852531 MsG0780038305.01.T01:CDS
TCCTTACTTGTCACCCAAGA+TGG 0.477577 7:-43851465 None:intergenic
CCCAGCAGGATGGGCTGAAT+GGG 0.483146 7:+43852329 MsG0780038305.01.T01:CDS
CCACATTGACCCAGCAGGAT+GGG 0.483548 7:+43852320 MsG0780038305.01.T01:CDS
TGTTTCTGTCTTGCCTCCAA+AGG 0.485356 7:+43851401 MsG0780038305.01.T01:CDS
AGCTGAGGAGAGATTGAAGA+AGG 0.490290 7:-43850940 None:intergenic
TCTTCAACCAAACATTGCCT+TGG 0.491452 7:-43852506 None:intergenic
CGAGATTCTCAGAATGATGA+AGG 0.494540 7:+43852788 MsG0780038305.01.T01:three_prime_UTR
TCAAAGCAATTTCCTCTCTA+GGG 0.506111 7:-43851154 None:intergenic
GAGTACATGAACAGTGGAGC+AGG 0.516556 7:+43852393 MsG0780038305.01.T01:CDS
AATCCGTCATTAGCCTTTGG+AGG 0.516912 7:-43851414 None:intergenic
ATGTTGTGGTGGCTCAGGAC+GGG 0.518219 7:+43851529 MsG0780038305.01.T01:CDS
GATGCTCGTGGGTGATGGTA+TGG 0.519105 7:+43851683 MsG0780038305.01.T01:CDS
TGTATTGAATGCCTAATGTC+TGG 0.519962 7:+43852677 MsG0780038305.01.T01:three_prime_UTR
AGGAGCCTTGCACAGGCTTG+AGG 0.521239 7:-43852227 None:intergenic
AGACTGCAACACAACCGTCC+TGG 0.522172 7:-43852286 None:intergenic
CTGATACTAGTGACTAGTAC+TGG 0.525804 7:-43850786 None:intergenic
GGCAAGAGAAGATCTAGCTC+TGG 0.529328 7:-43851373 None:intergenic
CGACACGAAGAGCAACTGCC+TGG 0.534343 7:-43851930 None:intergenic
GGAATTAATGGATTTGTCCA+TGG 0.534928 7:+43851187 MsG0780038305.01.T01:five_prime_UTR
TCTTGATACAAAATCATGCT+TGG 0.536495 7:+43850983 MsG0780038305.01.T01:five_prime_UTR
ATTTCTTCCATGGGCGACCT+AGG 0.537652 7:-43852260 None:intergenic
GCCACATTGACCCAGCAGGA+TGG 0.543084 7:+43852319 MsG0780038305.01.T01:CDS
ACAGGCTTGAGGTCTGAGCT+TGG 0.544567 7:-43852216 None:intergenic
AGGAGTCACGGTAAAATTGT+CGG 0.546069 7:-43852023 None:intergenic
CATGTATCAGAAGTGGTTCA+AGG 0.547184 7:+43851008 MsG0780038305.01.T01:five_prime_UTR
AGTAAGAGAGTGACTTGGCC+TGG 0.549821 7:+43852426 MsG0780038305.01.T01:CDS
AATGTTGTGGTGGCTCAGGA+CGG 0.552902 7:+43851528 MsG0780038305.01.T01:CDS
CAGGCAGTTGCTCTTCGTGT+CGG 0.553277 7:+43851931 MsG0780038305.01.T01:CDS
ATGAACAGTGGAGCAGGTGC+TGG 0.557932 7:+43852399 MsG0780038305.01.T01:CDS
GTCAACGGTACCAGTAATGT+AGG 0.568925 7:-43852043 None:intergenic
AATGTTTGGTTGAAGAACAC+AGG 0.570110 7:+43852513 MsG0780038305.01.T01:CDS
GTGTTGCAGTCTGTCGTGGA+CGG 0.571495 7:+43852297 MsG0780038305.01.T01:CDS
TGGATTAGAAGGTTCATCTC+GGG 0.573944 7:+43851317 MsG0780038305.01.T01:five_prime_UTR
GTGGTCTTTGGTATTGGACA+AGG 0.577903 7:-43851036 None:intergenic
GTTGTGATGAGAAATAATAA+GGG 0.580569 7:-43850907 None:intergenic
TGAGTCCCAAACTCTATCCA+TGG 0.582726 7:-43851204 None:intergenic
TGAACACATTCGAAAGGTCA+TGG 0.584603 7:+43851097 MsG0780038305.01.T01:five_prime_UTR
ATGGATTAGAAGGTTCATCT+CGG 0.586633 7:+43851316 MsG0780038305.01.T01:five_prime_UTR
TCAGACCTCAAGCCTGTGCA+AGG 0.586718 7:+43852222 MsG0780038305.01.T01:CDS
GGCAGGCCCAGAGAAGCACC+AGG 0.587751 7:+43851912 MsG0780038305.01.T01:CDS
GTCCTGAGCCACCACAACAT+TGG 0.587886 7:-43851526 None:intergenic
AAACATACCTAGGTCGCCCA+TGG 0.588490 7:+43852253 MsG0780038305.01.T01:CDS
GCCCATGGAAGAAATACTCC+AGG 0.590645 7:+43852268 MsG0780038305.01.T01:CDS
AATGTGATGCTCGTGGGTGA+TGG 0.592879 7:+43851678 MsG0780038305.01.T01:CDS
GTCACGGTAAAATTGTCGGT+TGG 0.595963 7:-43852019 None:intergenic
ATGGATGCAACAATAATCAC+AGG 0.600200 7:+43851702 MsG0780038305.01.T01:CDS
GACGGCCACATTGACCCAGC+AGG 0.601091 7:+43852315 MsG0780038305.01.T01:CDS
GTGGTGGCTCAGGACGGGAG+CGG 0.604096 7:+43851534 MsG0780038305.01.T01:CDS
CACAGCATGATGCACACACA+TGG 0.609251 7:+43851258 MsG0780038305.01.T01:five_prime_UTR
ATTAGGTTCCAAAACACGGC+AGG 0.609954 7:+43851895 MsG0780038305.01.T01:CDS
CATAAAGGCCAATGTTGTGG+TGG 0.610350 7:+43851518 MsG0780038305.01.T01:CDS
ACCTTCAAAAGTGCAACTGT+TGG 0.614293 7:+43851753 MsG0780038305.01.T01:CDS
GGACATTAGGTTCCAAAACA+CGG 0.614792 7:+43851891 MsG0780038305.01.T01:CDS
GGGTGACAAGTAAGGATCGA+AGG 0.615214 7:+43851472 MsG0780038305.01.T01:CDS
ACAGTAACACAGCTCATCCA+AGG 0.615529 7:+43852489 MsG0780038305.01.T01:CDS
CCCATCCTGCTGGGTCAATG+TGG 0.616266 7:-43852320 None:intergenic
CTTGGCTCATGTATCAGAAG+TGG 0.617657 7:+43851001 MsG0780038305.01.T01:five_prime_UTR
ATGTTTGGTTGAAGAACACA+GGG 0.618896 7:+43852514 MsG0780038305.01.T01:CDS
GTTGCATCTGCACCAGACAA+AGG 0.619378 7:+43851582 MsG0780038305.01.T01:CDS
ATCGTCTGAACACATTCGAA+AGG 0.620030 7:+43851091 MsG0780038305.01.T01:five_prime_UTR
TTGCCTCCAAAGGCTAATGA+CGG 0.622452 7:+43851411 MsG0780038305.01.T01:CDS
GGCTCCTTCAAAACATACCT+AGG 0.625221 7:+43852243 MsG0780038305.01.T01:CDS
ATCCATCCAAGCAAGTTGCA+TGG 0.627349 7:-43851299 None:intergenic
TACCAGTAATGTAGGAGTCA+CGG 0.627665 7:-43852035 None:intergenic
GGTTGTGTTGCAGTCTGTCG+TGG 0.629456 7:+43852293 MsG0780038305.01.T01:CDS
ACTGGAAATTGGTAAGCACA+TGG 0.631975 7:-43852723 None:intergenic
CAGTGTTAATAGCCCTAGAG+AGG 0.634111 7:+43851142 MsG0780038305.01.T01:five_prime_UTR
CTCACACAGATTAGGAGCTG+AGG 0.634824 7:-43850955 None:intergenic
GGACATAAAGGCCAATGTTG+TGG 0.635004 7:+43851515 MsG0780038305.01.T01:CDS
CATTCGAAAGGTCATGGACA+CGG 0.638521 7:+43851103 MsG0780038305.01.T01:five_prime_UTR
AAAGTTCAAGACTGTTGCTG+AGG 0.639338 7:+43851557 MsG0780038305.01.T01:CDS
CACCAGACAAAGGTACGGCA+AGG 0.641500 7:+43851592 MsG0780038305.01.T01:CDS
ATCTGCACCAGACAAAGGTA+CGG 0.645979 7:+43851587 MsG0780038305.01.T01:CDS
AAGACAAATGTGATGCTCGT+GGG 0.656177 7:+43851672 MsG0780038305.01.T01:CDS
TTATGATAGCAACTAAAGAG+AGG 0.656577 7:-43850875 None:intergenic
AAAGACAAATGTGATGCTCG+TGG 0.657035 7:+43851671 MsG0780038305.01.T01:CDS
GTACCAGTAAGAGAGTGACT+TGG 0.659801 7:+43852421 MsG0780038305.01.T01:CDS
ATTTCCAAAGATAAAGTCAA+CGG 0.668511 7:-43852058 None:intergenic
TATGGAGAGTACATGAACAG+TGG 0.671646 7:+43852387 MsG0780038305.01.T01:CDS
ACATTGCTGAATTGAAGTTG+CGG 0.677232 7:-43852184 None:intergenic
TTGGTTGAAGAACACAGGGG+TGG 0.685455 7:+43852518 MsG0780038305.01.T01:CDS
ATGGAAGAAATACTCCAGGA+CGG 0.704563 7:+43852272 MsG0780038305.01.T01:CDS
AGGCAAGACAGAAACAAGCA+CGG 0.705392 7:-43851394 None:intergenic
AATTGCTTTGAATGACTGTG+AGG 0.715887 7:+43851166 MsG0780038305.01.T01:five_prime_UTR
TGTTTGGTTGAAGAACACAG+GGG 0.875092 7:+43852515 MsG0780038305.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATATAAAACTGGAAAT+TGG - Chr7:43852737-43852756 None:intergenic 15.0%
!! AACAGAAAAATTATGCTTTA+TGG + Chr7:43852616-43852635 MsG0780038305.01.T01:three_prime_UTR 20.0%
!! ACTGTTGTAATATATAAAAC+TGG - Chr7:43852744-43852763 None:intergenic 20.0%
!! TACAAAGAAAACATAGAAAT+TGG + Chr7:43851642-43851661 MsG0780038305.01.T01:CDS 20.0%
!! TATGTTATCTATGTGAAAAA+GGG + Chr7:43851615-43851634 MsG0780038305.01.T01:CDS 20.0%
!! TTCATTGATGAAAAATTGAA+TGG + Chr7:43851435-43851454 MsG0780038305.01.T01:CDS 20.0%
!!! ATTTTTACGGATGTATAATT+TGG + Chr7:43851832-43851851 MsG0780038305.01.T01:intron 20.0%
!!! TTTTTGCAAACATTGTATTA+TGG + Chr7:43852369-43852388 MsG0780038305.01.T01:CDS 20.0%
! AAATGGTAAATACAGAAAAG+GGG - Chr7:43851793-43851812 None:intergenic 25.0%
! ATTTCCAAAGATAAAGTCAA+CGG - Chr7:43852061-43852080 None:intergenic 25.0%
! GAAATGGTAAATACAGAAAA+GGG - Chr7:43851794-43851813 None:intergenic 25.0%
! GTATGTTATCTATGTGAAAA+AGG + Chr7:43851614-43851633 MsG0780038305.01.T01:CDS 25.0%
! GTTGTGATGAGAAATAATAA+GGG - Chr7:43850910-43850929 None:intergenic 25.0%
! TGTTGTGATGAGAAATAATA+AGG - Chr7:43850911-43850930 None:intergenic 25.0%
!! AGGATTAACCAAAATGTTTT+TGG - Chr7:43850858-43850877 None:intergenic 25.0%
!! ATCTCGTTTATGGATTAAAA+AGG - Chr7:43852774-43852793 None:intergenic 25.0%
!! GAATCTGAATCTAAATTTTC+AGG - Chr7:43852886-43852905 None:intergenic 25.0%
!!! TAACCAAAATGTTTTTGGAA+GGG - Chr7:43850853-43850872 None:intergenic 25.0%
!!! TTAACCAAAATGTTTTTGGA+AGG - Chr7:43850854-43850873 None:intergenic 25.0%
!!! TTTTTGATGATATGATAACC+AGG - Chr7:43852447-43852466 None:intergenic 25.0%
AAATCACTGTCATAGAGAAA+TGG - Chr7:43851816-43851835 None:intergenic 30.0%
ATATGAGTGTACTCAATTTG+TGG - Chr7:43851058-43851077 None:intergenic 30.0%
CAAGTTTATTTCCAGACATT+AGG - Chr7:43852691-43852710 None:intergenic 30.0%
GAAAAATTATGCTTTATGGC+AGG + Chr7:43852620-43852639 MsG0780038305.01.T01:three_prime_UTR 30.0%
GGAAATGGTAAATACAGAAA+AGG - Chr7:43851795-43851814 None:intergenic 30.0%
TCTTGATACAAAATCATGCT+TGG + Chr7:43850983-43851002 MsG0780038305.01.T01:five_prime_UTR 30.0%
TTATGATAGCAACTAAAGAG+AGG - Chr7:43850878-43850897 None:intergenic 30.0%
! AATCCCTTCCAAAAACATTT+TGG + Chr7:43850847-43850866 MsG0780038305.01.T01:five_prime_UTR 30.0%
! ACTCGTACTTTTAACATAGA+TGG + Chr7:43852816-43852835 MsG0780038305.01.T01:three_prime_UTR 30.0%
! CTCTATGACAGTGATTTTTA+CGG + Chr7:43851819-43851838 MsG0780038305.01.T01:intron 30.0%
!!! ATGTTTTTTTGGTTGCTCAT+GGG - Chr7:43852126-43852145 None:intergenic 30.0%
AATGTTTGGTTGAAGAACAC+AGG + Chr7:43852513-43852532 MsG0780038305.01.T01:CDS 35.0%
ACATTGCTGAATTGAAGTTG+CGG - Chr7:43852187-43852206 None:intergenic 35.0%
ACTAGTCACTAGTATCAGTA+TGG + Chr7:43850791-43850810 MsG0780038305.01.T01:five_prime_UTR 35.0%
ATGGATGCAACAATAATCAC+AGG + Chr7:43851702-43851721 MsG0780038305.01.T01:CDS 35.0%
ATGTTTGGTTGAAGAACACA+GGG + Chr7:43852514-43852533 MsG0780038305.01.T01:CDS 35.0%
ATTTGTCCATGGATAGAGTT+TGG + Chr7:43851198-43851217 MsG0780038305.01.T01:five_prime_UTR 35.0%
CAATTTGTGGTCTTTGGTAT+TGG - Chr7:43851045-43851064 None:intergenic 35.0%
CATGAGCAACCAAAAAAACA+TGG + Chr7:43852125-43852144 MsG0780038305.01.T01:CDS 35.0%
CTGTCATAGAGAAATGGAAA+TGG - Chr7:43851810-43851829 None:intergenic 35.0%
GAATGACTGTGAGGAATTAA+TGG + Chr7:43851175-43851194 MsG0780038305.01.T01:five_prime_UTR 35.0%
GGCAGCTTAAATTTCATAGA+TGG + Chr7:43851723-43851742 MsG0780038305.01.T01:CDS 35.0%
TATCATCAAAAATGCTGCAG+AGG + Chr7:43852455-43852474 MsG0780038305.01.T01:CDS 35.0%
TCAAAGCAATTTCCTCTCTA+GGG - Chr7:43851157-43851176 None:intergenic 35.0%
TGTACTCAATTTGTGGTCTT+TGG - Chr7:43851051-43851070 None:intergenic 35.0%
TGTATTGAATGCCTAATGTC+TGG + Chr7:43852677-43852696 MsG0780038305.01.T01:three_prime_UTR 35.0%
TTCAAAGCAATTTCCTCTCT+AGG - Chr7:43851158-43851177 None:intergenic 35.0%
TTTGTCCATGGATAGAGTTT+GGG + Chr7:43851199-43851218 MsG0780038305.01.T01:five_prime_UTR 35.0%
! AATTGCTTTGAATGACTGTG+AGG + Chr7:43851166-43851185 MsG0780038305.01.T01:five_prime_UTR 35.0%
! AATTTTGCAGCGGTTAATGA+CGG - Chr7:43851968-43851987 None:intergenic 35.0%
! ATATGTTTCAGACGTTTTGC+AGG + Chr7:43852587-43852606 MsG0780038305.01.T01:three_prime_UTR 35.0%
! ATTGGTACACGCTTGTTAAA+GGG - Chr7:43852569-43852588 None:intergenic 35.0%
! CATTCTGAGAATCTCGTTTA+TGG - Chr7:43852784-43852803 None:intergenic 35.0%
! GAAATGCATCAATTTTGCAG+CGG - Chr7:43851978-43851997 None:intergenic 35.0%
! GCAAAACGTCTGAAACATAT+TGG - Chr7:43852587-43852606 None:intergenic 35.0%
! TATTGGTACACGCTTGTTAA+AGG - Chr7:43852570-43852589 None:intergenic 35.0%
!! ATGGATTAGAAGGTTCATCT+CGG + Chr7:43851316-43851335 MsG0780038305.01.T01:five_prime_UTR 35.0%
!! GGAATTAATGGATTTGTCCA+TGG + Chr7:43851187-43851206 MsG0780038305.01.T01:five_prime_UTR 35.0%
!! GTTTTTGGAAGGGATTTTCT+TGG - Chr7:43850843-43850862 None:intergenic 35.0%
!! TTGTTAAAGGGCATTTCTAC+AGG - Chr7:43852557-43852576 None:intergenic 35.0%
!!! CATGTTTTTTTGGTTGCTCA+TGG - Chr7:43852127-43852146 None:intergenic 35.0%
AAAAACATGGTCACTGCACA+AGG + Chr7:43852138-43852157 MsG0780038305.01.T01:CDS 40.0%
AAAGACAAATGTGATGCTCG+TGG + Chr7:43851671-43851690 MsG0780038305.01.T01:CDS 40.0%
AAAGTTCAAGACTGTTGCTG+AGG + Chr7:43851557-43851576 MsG0780038305.01.T01:CDS 40.0%
AAGACAAATGTGATGCTCGT+GGG + Chr7:43851672-43851691 MsG0780038305.01.T01:CDS 40.0%
ACTGGAAATTGGTAAGCACA+TGG - Chr7:43852726-43852745 None:intergenic 40.0%
AGGAGTCACGGTAAAATTGT+CGG - Chr7:43852026-43852045 None:intergenic 40.0%
ATCGTCTGAACACATTCGAA+AGG + Chr7:43851091-43851110 MsG0780038305.01.T01:five_prime_UTR 40.0%
ATGGAAGAAATACTCCAGGA+CGG + Chr7:43852272-43852291 MsG0780038305.01.T01:CDS 40.0%
CATGTATCAGAAGTGGTTCA+AGG + Chr7:43851008-43851027 MsG0780038305.01.T01:five_prime_UTR 40.0%
CGAGATTCTCAGAATGATGA+AGG + Chr7:43852788-43852807 MsG0780038305.01.T01:three_prime_UTR 40.0%
CTGATACTAGTGACTAGTAC+TGG - Chr7:43850789-43850808 None:intergenic 40.0%
GAGAGATTGAAGAAGGAGAT+AGG - Chr7:43850936-43850955 None:intergenic 40.0%
GCTTGTCTAGCAAAGATTGT+TGG - Chr7:43850821-43850840 None:intergenic 40.0%
GGACATTAGGTTCCAAAACA+CGG + Chr7:43851891-43851910 MsG0780038305.01.T01:CDS 40.0%
GGTTTATAGCTCAGGACATT+AGG + Chr7:43851878-43851897 MsG0780038305.01.T01:CDS 40.0%
TACCAGTAATGTAGGAGTCA+CGG - Chr7:43852038-43852057 None:intergenic 40.0%
TCGAATGTGTTCAGACGATT+TGG - Chr7:43851090-43851109 None:intergenic 40.0%
TCTTCAACCAAACATTGCCT+TGG - Chr7:43852509-43852528 None:intergenic 40.0%
TGAACACATTCGAAAGGTCA+TGG + Chr7:43851097-43851116 MsG0780038305.01.T01:five_prime_UTR 40.0%
TGTTTGGTTGAAGAACACAG+GGG + Chr7:43852515-43852534 MsG0780038305.01.T01:CDS 40.0%
TTGCAAAAAGTCCTTACTCG+CGG - Chr7:43852358-43852377 None:intergenic 40.0%
TTTCTACAGGCCTTCAATGA+AGG - Chr7:43852544-43852563 None:intergenic 40.0%
! AAGTAAGGATCGAAGGCTTT+TGG + Chr7:43851479-43851498 MsG0780038305.01.T01:CDS 40.0%
! ACCAACAGTTGCACTTTTGA+AGG - Chr7:43851757-43851776 None:intergenic 40.0%
! ACCTTCAAAAGTGCAACTGT+TGG + Chr7:43851753-43851772 MsG0780038305.01.T01:CDS 40.0%
! GAATGGCGATTTTCCATCTT+GGG + Chr7:43851452-43851471 MsG0780038305.01.T01:CDS 40.0%
! TATGGAGAGTACATGAACAG+TGG + Chr7:43852387-43852406 MsG0780038305.01.T01:CDS 40.0%
! TCCTGGAGTATTTCTTCCAT+GGG - Chr7:43852272-43852291 None:intergenic 40.0%
! TGAATGGCGATTTTCCATCT+TGG + Chr7:43851451-43851470 MsG0780038305.01.T01:CDS 40.0%
! TGGATTAGAAGGTTCATCTC+GGG + Chr7:43851317-43851336 MsG0780038305.01.T01:five_prime_UTR 40.0%
! TTTGGTTGCTCATGGGTTTT+CGG - Chr7:43852119-43852138 None:intergenic 40.0%
!! AACAGTTGCACTTTTGAAGG+TGG - Chr7:43851754-43851773 None:intergenic 40.0%
!! ACTTGCTTGGATGGATTAGA+AGG + Chr7:43851306-43851325 MsG0780038305.01.T01:five_prime_UTR 40.0%
!! ATGAATCCGTCATTAGCCTT+TGG - Chr7:43851420-43851439 None:intergenic 40.0%
!! GGTACCGTTGACTTTATCTT+TGG + Chr7:43852054-43852073 MsG0780038305.01.T01:CDS 40.0%
!!! GTGCAGTGACCATGTTTTTT+TGG - Chr7:43852137-43852156 None:intergenic 40.0%
!!! TTTGGTTTTGTAGCTGCTGT+TGG + Chr7:43851850-43851869 MsG0780038305.01.T01:intron 40.0%
ACAGTAACACAGCTCATCCA+AGG + Chr7:43852489-43852508 MsG0780038305.01.T01:CDS 45.0%
AGAGCATGCTCACACAGATT+AGG - Chr7:43850966-43850985 None:intergenic 45.0%
AGCTCATCCAAGGCAATGTT+TGG + Chr7:43852499-43852518 MsG0780038305.01.T01:CDS 45.0%
AGCTGAGGAGAGATTGAAGA+AGG - Chr7:43850943-43850962 None:intergenic 45.0%
AGGCAAGACAGAAACAAGCA+CGG - Chr7:43851397-43851416 None:intergenic 45.0%
ATCCATCCAAGCAAGTTGCA+TGG - Chr7:43851302-43851321 None:intergenic 45.0%
ATCTGCACCAGACAAAGGTA+CGG + Chr7:43851587-43851606 MsG0780038305.01.T01:CDS 45.0%
ATTAGGTTCCAAAACACGGC+AGG + Chr7:43851895-43851914 MsG0780038305.01.T01:CDS 45.0%
CAGTGTTAATAGCCCTAGAG+AGG + Chr7:43851142-43851161 MsG0780038305.01.T01:five_prime_UTR 45.0%
CATAAAGGCCAATGTTGTGG+TGG + Chr7:43851518-43851537 MsG0780038305.01.T01:CDS 45.0%
CATTCGAAAGGTCATGGACA+CGG + Chr7:43851103-43851122 MsG0780038305.01.T01:five_prime_UTR 45.0%
CGTTATGGAGAGTGATCTTC+AGG + Chr7:43851341-43851360 MsG0780038305.01.T01:exon 45.0%
CTTGGCTCATGTATCAGAAG+TGG + Chr7:43851001-43851020 MsG0780038305.01.T01:five_prime_UTR 45.0%
GAATTGAAGTTGCGGTGTTC+TGG - Chr7:43852179-43852198 None:intergenic 45.0%
GGACATAAAGGCCAATGTTG+TGG + Chr7:43851515-43851534 MsG0780038305.01.T01:CDS 45.0%
GGCTCCTTCAAAACATACCT+AGG + Chr7:43852243-43852262 MsG0780038305.01.T01:CDS 45.0%
GTACCAGTAAGAGAGTGACT+TGG + Chr7:43852421-43852440 MsG0780038305.01.T01:CDS 45.0%
GTCAACGGTACCAGTAATGT+AGG - Chr7:43852046-43852065 None:intergenic 45.0%
GTCACGGTAAAATTGTCGGT+TGG - Chr7:43852022-43852041 None:intergenic 45.0%
GTCTTCAGTTGGGGACATAA+AGG + Chr7:43851503-43851522 MsG0780038305.01.T01:CDS 45.0%
TACCGTGACTCCTACATTAC+TGG + Chr7:43852033-43852052 MsG0780038305.01.T01:CDS 45.0%
TCCATCTTGGGTGACAAGTA+AGG + Chr7:43851464-43851483 MsG0780038305.01.T01:CDS 45.0%
TCCTTACTTGTCACCCAAGA+TGG - Chr7:43851468-43851487 None:intergenic 45.0%
TGAGTCCCAAACTCTATCCA+TGG - Chr7:43851207-43851226 None:intergenic 45.0%
TTGCCTCCAAAGGCTAATGA+CGG + Chr7:43851411-43851430 MsG0780038305.01.T01:CDS 45.0%
TTGTAGCTGCTGTTGGAGAT+GGG + Chr7:43851857-43851876 MsG0780038305.01.T01:intron 45.0%
TTTGTAGCTGCTGTTGGAGA+TGG + Chr7:43851856-43851875 MsG0780038305.01.T01:intron 45.0%
! AACCATGCAACTTGCTTGGA+TGG + Chr7:43851297-43851316 MsG0780038305.01.T01:five_prime_UTR 45.0%
! CACTAACCATGCAACTTGCT+TGG + Chr7:43851293-43851312 MsG0780038305.01.T01:five_prime_UTR 45.0%
! GTCCTGGAGTATTTCTTCCA+TGG - Chr7:43852273-43852292 None:intergenic 45.0%
! GTGGTCTTTGGTATTGGACA+AGG - Chr7:43851039-43851058 None:intergenic 45.0%
! TGGAGATGGGTTTATAGCTC+AGG + Chr7:43851870-43851889 MsG0780038305.01.T01:CDS 45.0%
! TGTTTCTGTCTTGCCTCCAA+AGG + Chr7:43851401-43851420 MsG0780038305.01.T01:CDS 45.0%
! TTGGTTGCTCATGGGTTTTC+GGG - Chr7:43852118-43852137 None:intergenic 45.0%
!! AAGTTGCGGTGTTCTGGTTT+GGG - Chr7:43852173-43852192 None:intergenic 45.0%
!! AATCCGTCATTAGCCTTTGG+AGG - Chr7:43851417-43851436 None:intergenic 45.0%
!! GCGACCTAGGTATGTTTTGA+AGG - Chr7:43852250-43852269 None:intergenic 45.0%
!!! AGGCTTTTGGAGTCTTCAGT+TGG + Chr7:43851492-43851511 MsG0780038305.01.T01:CDS 45.0%
!!! GCTTTTGGAGTCTTCAGTTG+GGG + Chr7:43851494-43851513 MsG0780038305.01.T01:CDS 45.0%
!!! GGCTTTTGGAGTCTTCAGTT+GGG + Chr7:43851493-43851512 MsG0780038305.01.T01:CDS 45.0%
AAACATACCTAGGTCGCCCA+TGG + Chr7:43852253-43852272 MsG0780038305.01.T01:CDS 50.0%
AATGTGATGCTCGTGGGTGA+TGG + Chr7:43851678-43851697 MsG0780038305.01.T01:CDS 50.0%
AATGTTGTGGTGGCTCAGGA+CGG + Chr7:43851528-43851547 MsG0780038305.01.T01:CDS 50.0%
AGGCCAAGTCACTCTCTTAC+TGG - Chr7:43852427-43852446 None:intergenic 50.0%
AGGTTCATCTCGGGTCGTTA+TGG + Chr7:43851326-43851345 MsG0780038305.01.T01:exon 50.0%
ATTTCTTCCATGGGCGACCT+AGG - Chr7:43852263-43852282 None:intergenic 50.0%
CACAGCATGATGCACACACA+TGG + Chr7:43851258-43851277 MsG0780038305.01.T01:five_prime_UTR 50.0%
CTCACACAGATTAGGAGCTG+AGG - Chr7:43850958-43850977 None:intergenic 50.0%
GAGTACATGAACAGTGGAGC+AGG + Chr7:43852393-43852412 MsG0780038305.01.T01:CDS 50.0%
GCCCATGGAAGAAATACTCC+AGG + Chr7:43852268-43852287 MsG0780038305.01.T01:CDS 50.0%
GGGTGACAAGTAAGGATCGA+AGG + Chr7:43851472-43851491 MsG0780038305.01.T01:CDS 50.0%
GTTGCATCTGCACCAGACAA+AGG + Chr7:43851582-43851601 MsG0780038305.01.T01:CDS 50.0%
TACCTTGCCGTACCTTTGTC+TGG - Chr7:43851597-43851616 None:intergenic 50.0%
TTGGTTGAAGAACACAGGGG+TGG + Chr7:43852518-43852537 MsG0780038305.01.T01:CDS 50.0%
! AGTAAGAGAGTGACTTGGCC+TGG + Chr7:43852426-43852445 MsG0780038305.01.T01:CDS 50.0%
! GAAGTTGCGGTGTTCTGGTT+TGG - Chr7:43852174-43852193 None:intergenic 50.0%
! GGCAAGAGAAGATCTAGCTC+TGG - Chr7:43851376-43851395 None:intergenic 50.0%
!!! GTTTTGAAGGAGCCTTGCAC+AGG - Chr7:43852237-43852256 None:intergenic 50.0%
ACAGGCTTGAGGTCTGAGCT+TGG - Chr7:43852219-43852238 None:intergenic 55.0%
ACAGGGGTGGCCTTCATTGA+AGG + Chr7:43852531-43852550 MsG0780038305.01.T01:CDS 55.0%
AGACTGCAACACAACCGTCC+TGG - Chr7:43852289-43852308 None:intergenic 55.0%
ATGAACAGTGGAGCAGGTGC+TGG + Chr7:43852399-43852418 MsG0780038305.01.T01:CDS 55.0%
ATGTTGTGGTGGCTCAGGAC+GGG + Chr7:43851529-43851548 MsG0780038305.01.T01:CDS 55.0%
CAACTGCCTGGTGCTTCTCT+GGG - Chr7:43851921-43851940 None:intergenic 55.0%
CAGGCAGTTGCTCTTCGTGT+CGG + Chr7:43851931-43851950 MsG0780038305.01.T01:CDS 55.0%
CCACATTGACCCAGCAGGAT+GGG + Chr7:43852320-43852339 MsG0780038305.01.T01:CDS 55.0%
GGTTGTGTTGCAGTCTGTCG+TGG + Chr7:43852293-43852312 MsG0780038305.01.T01:CDS 55.0%
GTCCTGAGCCACCACAACAT+TGG - Chr7:43851529-43851548 None:intergenic 55.0%
GTGTTGCAGTCTGTCGTGGA+CGG + Chr7:43852297-43852316 MsG0780038305.01.T01:CDS 55.0%
TCAGACCTCAAGCCTGTGCA+AGG + Chr7:43852222-43852241 MsG0780038305.01.T01:CDS 55.0%
TGAATGGGATGCCGCGAGTA+AGG + Chr7:43852344-43852363 MsG0780038305.01.T01:CDS 55.0%
! CACCAGACAAAGGTACGGCA+AGG + Chr7:43851592-43851611 MsG0780038305.01.T01:CDS 55.0%
! GATGCTCGTGGGTGATGGTA+TGG + Chr7:43851683-43851702 MsG0780038305.01.T01:CDS 55.0%
! GGGCTGCAAGTTTGCTCTTC+TGG - Chr7:43852098-43852117 None:intergenic 55.0%
AGGAGCCTTGCACAGGCTTG+AGG - Chr7:43852230-43852249 None:intergenic 60.0%
CCCATCCTGCTGGGTCAATG+TGG - Chr7:43852323-43852342 None:intergenic 60.0%
CCCATTCAGCCCATCCTGCT+GGG - Chr7:43852332-43852351 None:intergenic 60.0%
CGACACGAAGAGCAACTGCC+TGG - Chr7:43851933-43851952 None:intergenic 60.0%
GCAACTGCCTGGTGCTTCTC+TGG - Chr7:43851922-43851941 None:intergenic 60.0%
GCCACATTGACCCAGCAGGA+TGG + Chr7:43852319-43852338 MsG0780038305.01.T01:CDS 60.0%
GGCCAATGTTGTGGTGGCTC+AGG + Chr7:43851524-43851543 MsG0780038305.01.T01:CDS 60.0%
TCCCATTCAGCCCATCCTGC+TGG - Chr7:43852333-43852352 None:intergenic 60.0%
! TCTCTGGGCCTGCCGTGTTT+TGG - Chr7:43851906-43851925 None:intergenic 60.0%
!! ACCCAGCAGGATGGGCTGAA+TGG + Chr7:43852328-43852347 MsG0780038305.01.T01:CDS 60.0%
!! CCCAGCAGGATGGGCTGAAT+GGG + Chr7:43852329-43852348 MsG0780038305.01.T01:CDS 60.0%
GACGGCCACATTGACCCAGC+AGG + Chr7:43852315-43852334 MsG0780038305.01.T01:CDS 65.0%
GTGGTGGCTCAGGACGGGAG+CGG + Chr7:43851534-43851553 MsG0780038305.01.T01:CDS 70.0%
!! GGCAGGCCCAGAGAAGCACC+AGG + Chr7:43851912-43851931 MsG0780038305.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 43850775 43852923 43850775 ID=MsG0780038305.01;Name=MsG0780038305.01
Chr7 mRNA 43850775 43852923 43850775 ID=MsG0780038305.01.T01;Parent=MsG0780038305.01;Name=MsG0780038305.01.T01;_AED=0.48;_eAED=0.48;_QI=570|1|1|1|1|1|2|363|375
Chr7 exon 43850775 43851774 43850775 ID=MsG0780038305.01.T01:exon:15731;Parent=MsG0780038305.01.T01
Chr7 exon 43851863 43852923 43851863 ID=MsG0780038305.01.T01:exon:15732;Parent=MsG0780038305.01.T01
Chr7 five_prime_UTR 43850775 43851344 43850775 ID=MsG0780038305.01.T01:five_prime_utr;Parent=MsG0780038305.01.T01
Chr7 CDS 43851345 43851774 43851345 ID=MsG0780038305.01.T01:cds;Parent=MsG0780038305.01.T01
Chr7 CDS 43851863 43852560 43851863 ID=MsG0780038305.01.T01:cds;Parent=MsG0780038305.01.T01
Chr7 three_prime_UTR 43852561 43852923 43852561 ID=MsG0780038305.01.T01:three_prime_utr;Parent=MsG0780038305.01.T01
Gene Sequence

>MsG0780038305.01.T01

ATGGAGAGTGATCTTCAGGACTTGATCTCCAGAGCTAGATCTTCTCTTGCCGTGCTTGTTTCTGTCTTGCCTCCAAAGGCTAATGACGGATTCATTGATGAAAAATTGAATGGCGATTTTCCATCTTGGGTGACAAGTAAGGATCGAAGGCTTTTGGAGTCTTCAGTTGGGGACATAAAGGCCAATGTTGTGGTGGCTCAGGACGGGAGCGGAAAGTTCAAGACTGTTGCTGAGGCTGTTGCATCTGCACCAGACAAAGGTACGGCAAGGTATGTTATCTATGTGAAAAAGGGAACATACAAAGAAAACATAGAAATTGGCAAGAAAAAGACAAATGTGATGCTCGTGGGTGATGGTATGGATGCAACAATAATCACAGGCAGCTTAAATTTCATAGATGGAACAACCACCTTCAAAAGTGCAACTGTTGCTGCTGTTGGAGATGGGTTTATAGCTCAGGACATTAGGTTCCAAAACACGGCAGGCCCAGAGAAGCACCAGGCAGTTGCTCTTCGTGTCGGCGCTGATCAATCCGTCATTAACCGCTGCAAAATTGATGCATTTCAAGACACTCTCTACGCACACTCCAACCGACAATTTTACCGTGACTCCTACATTACTGGTACCGTTGACTTTATCTTTGGAAATGCAGCTGTTGTTTTCCAGAAGAGCAAACTTGCAGCCCGAAAACCCATGAGCAACCAAAAAAACATGGTCACTGCACAAGGTCGCGAAGACCCAAACCAGAACACCGCAACTTCAATTCAGCAATGTGACGTAATACCAAGCTCAGACCTCAAGCCTGTGCAAGGCTCCTTCAAAACATACCTAGGTCGCCCATGGAAGAAATACTCCAGGACGGTTGTGTTGCAGTCTGTCGTGGACGGCCACATTGACCCAGCAGGATGGGCTGAATGGGATGCCGCGAGTAAGGACTTTTTGCAAACATTGTATTATGGAGAGTACATGAACAGTGGAGCAGGTGCTGGTACCAGTAAGAGAGTGACTTGGCCTGGTTATCATATCATCAAAAATGCTGCAGAGGCTAGCAAGTTTACAGTAACACAGCTCATCCAAGGCAATGTTTGGTTGAAGAACACAGGGGTGGCCTTCATTGAAGGCCTGTAG

Protein sequence

>MsG0780038305.01.T01

MESDLQDLISRARSSLAVLVSVLPPKANDGFIDEKLNGDFPSWVTSKDRRLLESSVGDIKANVVVAQDGSGKFKTVAEAVASAPDKGTARYVIYVKKGTYKENIEIGKKKTNVMLVGDGMDATIITGSLNFIDGTTTFKSATVAAVGDGFIAQDIRFQNTAGPEKHQAVALRVGADQSVINRCKIDAFQDTLYAHSNRQFYRDSYITGTVDFIFGNAAVVFQKSKLAARKPMSNQKNMVTAQGREDPNQNTATSIQQCDVIPSSDLKPVQGSFKTYLGRPWKKYSRTVVLQSVVDGHIDPAGWAEWDAASKDFLQTLYYGEYMNSGAGAGTSKRVTWPGYHIIKNAAEASKFTVTQLIQGNVWLKNTGVAFIEGL*