Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023575.01.T01 | QDX01730.1 | 47.368 | 171 | 29 | 6 | 1 | 113 | 1 | 168 | 1.76E-30 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023575.01.T01 | Q9FY93 | 47.778 | 90 | 41 | 2 | 1 | 87 | 1 | 87 | 1.70E-16 | 75.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023575.01.T01 | A0A6B7JG29 | 47.368 | 171 | 29 | 6 | 1 | 113 | 1 | 168 | 8.40e-31 | 119 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000161.01 | MsG0480023575.01 | 0.802426 | 5.642572e-49 | 2.763277e-46 |
| MsG0180000466.01 | MsG0480023575.01 | 0.801501 | 8.740130e-49 | 4.180714e-46 |
| MsG0180000556.01 | MsG0480023575.01 | 0.806550 | 7.792129e-50 | 4.241498e-47 |
| MsG0180000698.01 | MsG0480023575.01 | 0.801891 | 7.270572e-49 | 3.512353e-46 |
| MsG0180001147.01 | MsG0480023575.01 | -0.810963 | 8.875660e-51 | 5.426146e-48 |
| MsG0180001588.01 | MsG0480023575.01 | 0.819886 | 9.174601e-53 | 7.149133e-50 |
| MsG0180001614.01 | MsG0480023575.01 | -0.802983 | 4.329834e-49 | 2.150518e-46 |
| MsG0180001656.01 | MsG0480023575.01 | -0.816816 | 4.549809e-52 | 3.257446e-49 |
| MsG0180002808.01 | MsG0480023575.01 | 0.830326 | 3.128195e-55 | 3.285045e-52 |
| MsG0180003324.01 | MsG0480023575.01 | -0.801624 | 8.245719e-49 | 3.956250e-46 |
| MsG0180003620.01 | MsG0480023575.01 | 0.833897 | 4.096469e-56 | 4.783387e-53 |
| MsG0180004064.01 | MsG0480023575.01 | 0.805907 | 1.064193e-49 | 5.698425e-47 |
| MsG0180004120.01 | MsG0480023575.01 | 0.800716 | 1.264869e-48 | 5.931027e-46 |
| MsG0180004688.01 | MsG0480023575.01 | 0.818641 | 1.763109e-52 | 1.327094e-49 |
| MsG0180005369.01 | MsG0480023575.01 | -0.806504 | 7.966531e-50 | 4.331276e-47 |
| MsG0180005608.01 | MsG0480023575.01 | 0.814382 | 1.585280e-51 | 1.062146e-48 |
| MsG0180005621.01 | MsG0480023575.01 | 0.818858 | 1.574050e-52 | 1.192052e-49 |
| MsG0180005633.01 | MsG0480023575.01 | 0.814287 | 1.664005e-51 | 1.111964e-48 |
| MsG0180005678.01 | MsG0480023575.01 | 0.842025 | 3.327082e-58 | 4.979135e-55 |
| MsG0180005762.01 | MsG0480023575.01 | 0.804546 | 2.050988e-49 | 1.060410e-46 |
| MsG0180005819.01 | MsG0480023575.01 | 0.809500 | 1.834701e-50 | 1.078988e-47 |
| MsG0180006183.01 | MsG0480023575.01 | 0.834096 | 3.651456e-56 | 4.289013e-53 |
| MsG0180006253.01 | MsG0480023575.01 | 0.807077 | 6.027918e-50 | 3.325954e-47 |
| MsG0280010617.01 | MsG0480023575.01 | 0.876356 | 1.490120e-68 | 7.202245e-65 |
| MsG0280010825.01 | MsG0480023575.01 | 0.858151 | 1.002757e-62 | 2.534716e-59 |
| MsG0280010994.01 | MsG0480023575.01 | -0.808415 | 3.132520e-50 | 1.790031e-47 |
| MsG0280011016.01 | MsG0480023575.01 | 0.817036 | 4.060140e-52 | 2.924515e-49 |
| MsG0280011269.01 | MsG0480023575.01 | 0.800855 | 1.184919e-48 | 5.576181e-46 |
| MsG0380014231.01 | MsG0480023575.01 | -0.830592 | 2.692864e-55 | 2.849938e-52 |
| MsG0380014544.01 | MsG0480023575.01 | 0.834449 | 2.978906e-56 | 3.536446e-53 |
| MsG0480020937.01 | MsG0480023575.01 | 0.825243 | 5.214142e-54 | 4.726384e-51 |
| MsG0480021151.01 | MsG0480023575.01 | -0.808234 | 3.423333e-50 | 1.946966e-47 |
| MsG0480021175.01 | MsG0480023575.01 | 0.825254 | 5.180863e-54 | 4.697765e-51 |
| MsG0480021436.01 | MsG0480023575.01 | 0.821274 | 4.405766e-53 | 3.567796e-50 |
| MsG0480021486.01 | MsG0480023575.01 | 0.807449 | 5.027521e-50 | 2.801089e-47 |
| MsG0480021740.01 | MsG0480023575.01 | 0.833163 | 6.245919e-56 | 7.134069e-53 |
| MsG0480021773.01 | MsG0480023575.01 | 0.803050 | 4.194586e-49 | 2.086907e-46 |
| MsG0480022378.01 | MsG0480023575.01 | 0.803213 | 3.880137e-49 | 1.938613e-46 |
| MsG0480023125.01 | MsG0480023575.01 | 0.811164 | 8.029017e-51 | 4.934067e-48 |
| MsG0480023575.01 | MsG0480023626.01 | 0.826251 | 3.006345e-54 | 2.804438e-51 |
| MsG0480023575.01 | MsG0480023913.01 | 0.822367 | 2.460359e-53 | 2.055338e-50 |
| MsG0480023575.01 | MsG0480024019.01 | 0.823489 | 1.347858e-53 | 1.162244e-50 |
| MsG0480023575.01 | MsG0580024276.01 | 0.814353 | 1.608839e-51 | 1.077017e-48 |
| MsG0480023575.01 | MsG0580024980.01 | 0.817374 | 3.408779e-52 | 2.478186e-49 |
| MsG0480023575.01 | MsG0580025023.01 | 0.811331 | 7.386151e-51 | 4.558902e-48 |
| MsG0480023575.01 | MsG0580025463.01 | 0.800339 | 1.509396e-48 | 7.010791e-46 |
| MsG0480023575.01 | MsG0580027135.01 | 0.850285 | 1.874473e-60 | 3.653404e-57 |
| MsG0480023575.01 | MsG0580027276.01 | -0.816249 | 6.096847e-52 | 4.297895e-49 |
| MsG0480023575.01 | MsG0580027517.01 | 0.831801 | 1.358661e-55 | 1.490552e-52 |
| MsG0480023575.01 | MsG0580028916.01 | 0.874229 | 7.950828e-68 | 3.551141e-64 |
| MsG0480023575.01 | MsG0580029158.01 | 0.805482 | 1.306590e-49 | 6.920424e-47 |
| MsG0480023575.01 | MsG0580029696.01 | 0.800218 | 1.597883e-48 | 7.398744e-46 |
| MsG0480023575.01 | MsG0580030141.01 | 0.842289 | 2.831642e-58 | 4.273387e-55 |
| MsG0480023575.01 | MsG0680031204.01 | -0.821787 | 3.352516e-53 | 2.754529e-50 |
| MsG0480023575.01 | MsG0680031356.01 | 0.863183 | 2.986499e-64 | 8.973719e-61 |
| MsG0480023575.01 | MsG0680033645.01 | 0.804869 | 1.756188e-49 | 9.157129e-47 |
| MsG0480023575.01 | MsG0780036944.01 | 0.800846 | 1.190084e-48 | 5.599098e-46 |
| MsG0480023575.01 | MsG0780038647.01 | 0.815597 | 8.521020e-52 | 5.900742e-49 |
| MsG0480023575.01 | MsG0780039536.01 | 0.836837 | 7.403767e-57 | 9.442867e-54 |
| MsG0480023575.01 | MsG0780040459.01 | 0.834974 | 2.196998e-56 | 2.649605e-53 |
| MsG0480023575.01 | MsG0780040554.01 | 0.809630 | 1.720963e-50 | 1.015685e-47 |
| MsG0480023575.01 | MsG0780040594.01 | 0.816623 | 5.025974e-52 | 3.579408e-49 |
| MsG0480023575.01 | MsG0780040847.01 | 0.805271 | 1.446831e-49 | 7.621550e-47 |
| MsG0480023575.01 | MsG0780041820.01 | 0.822706 | 2.052584e-53 | 1.731170e-50 |
| MsG0480023575.01 | MsG0880042392.01 | 0.828101 | 1.084173e-54 | 1.067117e-51 |
| MsG0480023575.01 | MsG0880043550.01 | 0.832771 | 7.814000e-56 | 8.821231e-53 |
| MsG0480023575.01 | MsG0880043920.01 | 0.809480 | 1.853531e-50 | 1.089467e-47 |
| MsG0480023575.01 | MsG0880044545.01 | -0.804083 | 2.560808e-49 | 1.308399e-46 |
| MsG0480023575.01 | MsG0880044968.01 | -0.819736 | 9.931203e-53 | 7.706203e-50 |
| MsG0480023575.01 | MsG0880045090.01 | 0.804582 | 2.016095e-49 | 1.043367e-46 |
| MsG0480023575.01 | MsG0880045725.01 | 0.816107 | 6.557622e-52 | 4.604826e-49 |
| MsG0480023575.01 | MsG0880045802.01 | 0.813817 | 2.112612e-51 | 1.393870e-48 |
| MsG0480023575.01 | MsG0880045991.01 | 0.808453 | 3.073732e-50 | 1.758275e-47 |
| MsG0480023575.01 | MsG0880046174.01 | -0.811688 | 6.176254e-51 | 3.848289e-48 |
| MsG0480023575.01 | MsG0880047090.01 | 0.824388 | 8.291540e-54 | 7.333475e-51 |
| MsG0480023575.01 | MsG0880047450.01 | 0.809004 | 2.344171e-50 | 1.360408e-47 |
| MsG0380015402.01 | MsG0480023575.01 | 0.834883 | 2.315880e-56 | 2.785078e-53 |
| MsG0380015828.01 | MsG0480023575.01 | -0.807799 | 4.235820e-50 | 2.381622e-47 |
| MsG0380016031.01 | MsG0480023575.01 | 0.886112 | 4.538262e-72 | 3.198958e-68 |
| MsG0380016096.01 | MsG0480023575.01 | -0.804710 | 1.895589e-49 | 9.842763e-47 |
| MsG0380016677.01 | MsG0480023575.01 | 0.813460 | 2.530882e-51 | 1.653899e-48 |
| MsG0380016819.01 | MsG0480023575.01 | 0.864290 | 1.352713e-64 | 4.225419e-61 |
| MsG0380016845.01 | MsG0480023575.01 | 0.819192 | 1.321603e-52 | 1.010042e-49 |
| MsG0380017380.01 | MsG0480023575.01 | 0.823429 | 1.391493e-53 | 1.197771e-50 |
| MsG0380017416.01 | MsG0480023575.01 | 0.800087 | 1.698659e-48 | 7.839342e-46 |
| MsG0380017653.01 | MsG0480023575.01 | 0.811725 | 6.065053e-51 | 3.782875e-48 |
| MsG0380018035.01 | MsG0480023575.01 | -0.818980 | 1.476780e-52 | 1.122243e-49 |
| MsG0480018362.01 | MsG0480023575.01 | 0.862160 | 6.170939e-64 | 1.789796e-60 |
| MsG0280006851.01 | MsG0480023575.01 | 0.837070 | 6.458055e-57 | 8.294394e-54 |
| MsG0280006924.01 | MsG0480023575.01 | 0.855095 | 7.939100e-62 | 1.811998e-58 |
| MsG0280007163.01 | MsG0480023575.01 | 0.804831 | 1.788544e-49 | 9.316305e-47 |
| MsG0280007504.01 | MsG0480023575.01 | 0.837839 | 4.101202e-57 | 5.394063e-54 |
| MsG0280007505.01 | MsG0480023575.01 | 0.803592 | 3.239442e-49 | 1.634409e-46 |
| MsG0280007842.01 | MsG0480023575.01 | 0.804583 | 2.015014e-49 | 1.042835e-46 |
| MsG0280009398.01 | MsG0480023575.01 | 0.809520 | 1.817000e-50 | 1.069152e-47 |
| MsG0280009980.01 | MsG0480023575.01 | 0.804497 | 2.099684e-49 | 1.084213e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023575.01.T01 | MTR_8g099750 | 68.132 | 91 | 22 | 3 | 1 | 87 | 1 | 88 | 5.77e-32 | 112 |
| MsG0480023575.01.T01 | MTR_3g098810 | 60.870 | 92 | 29 | 4 | 1 | 88 | 1 | 89 | 6.00e-27 | 98.2 |
| MsG0480023575.01.T01 | MTR_3g098810 | 61.538 | 91 | 28 | 4 | 1 | 87 | 1 | 88 | 4.33e-26 | 97.8 |
| MsG0480023575.01.T01 | MTR_7g005280 | 48.980 | 98 | 31 | 5 | 1 | 88 | 1 | 89 | 6.29e-17 | 73.9 |
| MsG0480023575.01.T01 | MTR_4g081870 | 41.772 | 79 | 43 | 1 | 12 | 87 | 7 | 85 | 1.76e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023575.01.T01 | AT5G13180 | 47.778 | 90 | 41 | 2 | 1 | 87 | 1 | 87 | 1.74e-17 | 75.5 |
| MsG0480023575.01.T01 | AT2G33480 | 41.593 | 113 | 47 | 5 | 1 | 103 | 1 | 104 | 2.60e-14 | 67.0 |
| MsG0480023575.01.T01 | AT2G33480 | 41.593 | 113 | 47 | 5 | 1 | 103 | 1 | 104 | 2.63e-14 | 67.0 |
Find 31 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCTATACTTTGCTTCCT+TGG | 0.288379 | 4:+87138811 | None:intergenic |
| TTGTTGGGTTGGCAGAACTA+TGG | 0.348677 | 4:-87138377 | MsG0480023575.01.T01:intron |
| AGAACAACAAATGTGGATAT+TGG | 0.367929 | 4:-87138773 | MsG0480023575.01.T01:CDS |
| TGTGGATATTGGAAGGCAAC+AGG | 0.396475 | 4:-87138762 | MsG0480023575.01.T01:CDS |
| TGTTTGCAAGTATGATCCTT+GGG | 0.435717 | 4:-87139317 | MsG0480023575.01.T01:CDS |
| CAAAGTATAGAAATAGTAAT+CGG | 0.458697 | 4:-87138802 | MsG0480023575.01.T01:CDS |
| TTCTGTGTCGGTTATCTGTA+AGG | 0.460976 | 4:-87138335 | MsG0480023575.01.T01:CDS |
| AACATTGACCTCAGGAATGA+TGG | 0.468324 | 4:+87139336 | None:intergenic |
| AACACAAGCTCTTCATCTGT+TGG | 0.471066 | 4:+87139402 | None:intergenic |
| GCAGAACTATGGAATGAGAT+AGG | 0.489923 | 4:-87138366 | MsG0480023575.01.T01:intron |
| CAAGCTCTTCATCTGTTGGT+TGG | 0.493179 | 4:+87139406 | None:intergenic |
| ATGGAATGAGATAGGAGAAT+GGG | 0.504294 | 4:-87138358 | MsG0480023575.01.T01:CDS |
| TATGATCCTTGGGATTTGCC+AGG | 0.504380 | 4:-87139307 | MsG0480023575.01.T01:intron |
| ATGTTTGCAAGTATGATCCT+TGG | 0.507170 | 4:-87139318 | MsG0480023575.01.T01:CDS |
| AGGAATGATGGAAGCAGGCA+AGG | 0.516507 | 4:+87139348 | None:intergenic |
| ACCTCAGGAATGATGGAAGC+AGG | 0.516623 | 4:+87139343 | None:intergenic |
| GCCTGCTTCCATCATTCCTG+AGG | 0.534650 | 4:-87139344 | MsG0480023575.01.T01:CDS |
| TACTTGCAAACATTGACCTC+AGG | 0.544904 | 4:+87139328 | None:intergenic |
| GGAATGATGGAAGCAGGCAA+GGG | 0.549247 | 4:+87139349 | None:intergenic |
| TATGGAATGAGATAGGAGAA+TGG | 0.549911 | 4:-87138359 | MsG0480023575.01.T01:CDS |
| CAACAAATGTGGATATTGGA+AGG | 0.572876 | 4:-87138769 | MsG0480023575.01.T01:CDS |
| TACTGACCTGGCAAATCCCA+AGG | 0.595838 | 4:+87139301 | None:intergenic |
| TAGGAGAATGGGTTCTGTGT+CGG | 0.601018 | 4:-87138347 | MsG0480023575.01.T01:CDS |
| GGAGTGAGTAGATTGCCTCC+TGG | 0.605400 | 4:-87139438 | MsG0480023575.01.T01:CDS |
| GATGAGTAGAACAACAAATG+TGG | 0.615714 | 4:-87138780 | MsG0480023575.01.T01:CDS |
| GTGGATATTGGAAGGCAACA+GGG | 0.617430 | 4:-87138761 | MsG0480023575.01.T01:intron |
| AGGAGGTTGTGATGAACAAG+AGG | 0.619529 | 4:-87138847 | MsG0480023575.01.T01:CDS |
| GTTATCTGTAAGGAAAGAAG+TGG | 0.626924 | 4:-87138325 | MsG0480023575.01.T01:CDS |
| GTTGGTTGGAAACGAAAACC+AGG | 0.630000 | 4:+87139420 | None:intergenic |
| GAATGATGGAAGCAGGCAAG+GGG | 0.638798 | 4:+87139350 | None:intergenic |
| GGTTGGAAACGAAAACCAGG+AGG | 0.757632 | 4:+87139423 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTATTTAGTGTAAAAA+AGG | + | Chr4:87138752-87138771 | None:intergenic | 10.0% |
| !!! | TATATAATTTAACTTTTGTT+GGG | - | Chr4:87139393-87139412 | MsG0480023575.01.T01:CDS | 10.0% |
| !!! | TTATATAATTTAACTTTTGT+TGG | - | Chr4:87139392-87139411 | MsG0480023575.01.T01:CDS | 10.0% |
| !!! | TTTCTAATATTTTTTTTTTG+TGG | - | Chr4:87138617-87138636 | MsG0480023575.01.T01:intron | 10.0% |
| !!! | AAGCTGAATTTTATTAAAAA+TGG | - | Chr4:87138326-87138345 | MsG0480023575.01.T01:CDS | 15.0% |
| !!! | TAAATCTTATTAACTAGTTT+TGG | - | Chr4:87138822-87138841 | MsG0480023575.01.T01:CDS | 15.0% |
| !! | CAAAGTATAGAAATAGTAAT+CGG | - | Chr4:87138983-87139002 | MsG0480023575.01.T01:intron | 20.0% |
| !! | TAGCCATTAACAAATAATAA+AGG | - | Chr4:87138872-87138891 | MsG0480023575.01.T01:intron | 20.0% |
| !! | TATGTGAAAATAGATCATTA+TGG | - | Chr4:87139351-87139370 | MsG0480023575.01.T01:CDS | 20.0% |
| !! | TTGTAAAAAAAATTCAACGT+TGG | - | Chr4:87138584-87138603 | MsG0480023575.01.T01:intron | 20.0% |
| !!! | TCTCCTTTATTATTTGTTAA+TGG | + | Chr4:87138878-87138897 | None:intergenic | 20.0% |
| !!! | TTAACATTGTTTTGTTTGAT+TGG | - | Chr4:87138912-87138931 | MsG0480023575.01.T01:intron | 20.0% |
| ! | ATTTCATCTTCAACTTGTAA+TGG | - | Chr4:87139058-87139077 | MsG0480023575.01.T01:intron | 25.0% |
| ! | GACAATGTATAATATATGCA+AGG | + | Chr4:87138665-87138684 | None:intergenic | 25.0% |
| !!! | AAAACTTTGGTTTTCTATGA+AGG | - | Chr4:87139097-87139116 | MsG0480023575.01.T01:intron | 25.0% |
| !!! | AAACTTTGGTTTTCTATGAA+GGG | - | Chr4:87139098-87139117 | MsG0480023575.01.T01:intron | 25.0% |
| !!! | TAATTTAACTTTTGTTGGGT+TGG | - | Chr4:87139397-87139416 | MsG0480023575.01.T01:CDS | 25.0% |
| !!! | TTGTTTTGTTTGATTGGTAT+AGG | - | Chr4:87138918-87138937 | MsG0480023575.01.T01:intron | 25.0% |
| AAATGCGTAAGTAATTACCT+GGG | + | Chr4:87139202-87139221 | None:intergenic | 30.0% | |
| AGAACAACAAATGTGGATAT+TGG | - | Chr4:87139012-87139031 | MsG0480023575.01.T01:intron | 30.0% | |
| ATTTCTATACTTTGCTTCCT+TGG | + | Chr4:87138977-87138996 | None:intergenic | 30.0% | |
| TGTATAATATATGCAAGGTC+TGG | + | Chr4:87138660-87138679 | None:intergenic | 30.0% | |
| TTGTGAAAATGAGTTAGACT+CGG | + | Chr4:87138534-87138553 | None:intergenic | 30.0% | |
| ! | ACTCATTTTCACAAACTGAT+TGG | - | Chr4:87138540-87138559 | MsG0480023575.01.T01:intron | 30.0% |
| !! | TTTGTTATTAGTTACTGACC+TGG | + | Chr4:87138499-87138518 | None:intergenic | 30.0% |
| !! | TTTTGTTTGATTGGTATAGG+AGG | - | Chr4:87138921-87138940 | MsG0480023575.01.T01:intron | 30.0% |
| !!! | ATTTTTTTTTTGTGGTAGCC+AGG | - | Chr4:87138625-87138644 | MsG0480023575.01.T01:intron | 30.0% |
| !!! | TTTTTTTTTTGTGGTAGCCA+GGG | - | Chr4:87138626-87138645 | MsG0480023575.01.T01:intron | 30.0% |
| ATGGAATGAGATAGGAGAAT+GGG | - | Chr4:87139427-87139446 | MsG0480023575.01.T01:CDS | 35.0% | |
| ATGTTTGCAAGTATGATCCT+TGG | - | Chr4:87138467-87138486 | MsG0480023575.01.T01:intron | 35.0% | |
| CAAATGCGTAAGTAATTACC+TGG | + | Chr4:87139203-87139222 | None:intergenic | 35.0% | |
| CAACAAATGTGGATATTGGA+AGG | - | Chr4:87139016-87139035 | MsG0480023575.01.T01:intron | 35.0% | |
| CAACTTGTAATGGCATTGTA+GGG | - | Chr4:87139068-87139087 | MsG0480023575.01.T01:intron | 35.0% | |
| GATGAGTAGAACAACAAATG+TGG | - | Chr4:87139005-87139024 | MsG0480023575.01.T01:intron | 35.0% | |
| GTTATCTGTAAGGAAAGAAG+TGG | - | Chr4:87139460-87139479 | MsG0480023575.01.T01:CDS | 35.0% | |
| TAGTAGTTTCCACATTGATG+AGG | + | Chr4:87139170-87139189 | None:intergenic | 35.0% | |
| TATGAAGGGAAATCCCAAAT+GGG | - | Chr4:87139112-87139131 | MsG0480023575.01.T01:intron | 35.0% | |
| TATGGAATGAGATAGGAGAA+TGG | - | Chr4:87139426-87139445 | MsG0480023575.01.T01:CDS | 35.0% | |
| TCAACTTGTAATGGCATTGT+AGG | - | Chr4:87139067-87139086 | MsG0480023575.01.T01:intron | 35.0% | |
| TGTAGGGCTAAGAAAAACTT+TGG | - | Chr4:87139084-87139103 | MsG0480023575.01.T01:intron | 35.0% | |
| TGTGAAAATGAGTTAGACTC+GGG | + | Chr4:87138533-87138552 | None:intergenic | 35.0% | |
| TGTTTGCAAGTATGATCCTT+GGG | - | Chr4:87138468-87138487 | MsG0480023575.01.T01:intron | 35.0% | |
| !! | AATCAGTTCTAGACCCATTT+GGG | + | Chr4:87139128-87139147 | None:intergenic | 35.0% |
| AACACAAGCTCTTCATCTGT+TGG | + | Chr4:87138386-87138405 | None:intergenic | 40.0% | |
| AACATTGACCTCAGGAATGA+TGG | + | Chr4:87138452-87138471 | None:intergenic | 40.0% | |
| AACTACTAACAACTCAACCC+AGG | - | Chr4:87139182-87139201 | MsG0480023575.01.T01:intron | 40.0% | |
| CTATGAAGGGAAATCCCAAA+TGG | - | Chr4:87139111-87139130 | MsG0480023575.01.T01:intron | 40.0% | |
| GCAGAACTATGGAATGAGAT+AGG | - | Chr4:87139419-87139438 | MsG0480023575.01.T01:CDS | 40.0% | |
| TACTTGCAAACATTGACCTC+AGG | + | Chr4:87138460-87138479 | None:intergenic | 40.0% | |
| TGAATATCGCCTCATCAATG+TGG | - | Chr4:87139158-87139177 | MsG0480023575.01.T01:intron | 40.0% | |
| ! | CAAATGGGTCTAGAACTGAT+TGG | - | Chr4:87139127-87139146 | MsG0480023575.01.T01:intron | 40.0% |
| ! | TGAGCTTAGATCAGTTGGTA+GGG | + | Chr4:87138687-87138706 | None:intergenic | 40.0% |
| !! | CAATCAGTTCTAGACCCATT+TGG | + | Chr4:87139129-87139148 | None:intergenic | 40.0% |
| !! | TTCTGTGTCGGTTATCTGTA+AGG | - | Chr4:87139450-87139469 | MsG0480023575.01.T01:CDS | 40.0% |
| AGGAGGTTGTGATGAACAAG+AGG | - | Chr4:87138938-87138957 | MsG0480023575.01.T01:intron | 45.0% | |
| CAACTGATCTAAGCTCACGA+GGG | - | Chr4:87138690-87138709 | MsG0480023575.01.T01:intron | 45.0% | |
| CAAGCTCTTCATCTGTTGGT+TGG | + | Chr4:87138382-87138401 | None:intergenic | 45.0% | |
| GTGAGCTTAGATCAGTTGGT+AGG | + | Chr4:87138688-87138707 | None:intergenic | 45.0% | |
| GTGGATATTGGAAGGCAACA+GGG | - | Chr4:87139024-87139043 | MsG0480023575.01.T01:intron | 45.0% | |
| GTTGGTTGGAAACGAAAACC+AGG | + | Chr4:87138368-87138387 | None:intergenic | 45.0% | |
| TATGATCCTTGGGATTTGCC+AGG | - | Chr4:87138478-87138497 | MsG0480023575.01.T01:intron | 45.0% | |
| TGATGAGGCGATATTCATGC+AGG | + | Chr4:87139155-87139174 | None:intergenic | 45.0% | |
| TGTGGATATTGGAAGGCAAC+AGG | - | Chr4:87139023-87139042 | MsG0480023575.01.T01:intron | 45.0% | |
| ! | AAGGTCTGGAATTCAAACCC+TGG | + | Chr4:87138646-87138665 | None:intergenic | 45.0% |
| ! | TAGGAGAATGGGTTCTGTGT+CGG | - | Chr4:87139438-87139457 | MsG0480023575.01.T01:CDS | 45.0% |
| !! | TTGTTGGGTTGGCAGAACTA+TGG | - | Chr4:87139408-87139427 | MsG0480023575.01.T01:CDS | 45.0% |
| CCAACTGATCTAAGCTCACG+AGG | - | Chr4:87138689-87138708 | MsG0480023575.01.T01:intron | 50.0% | |
| CCTCGTGAGCTTAGATCAGT+TGG | + | Chr4:87138692-87138711 | None:intergenic | 50.0% | |
| GGTTGGAAACGAAAACCAGG+AGG | + | Chr4:87138365-87138384 | None:intergenic | 50.0% | |
| TACTGACCTGGCAAATCCCA+AGG | + | Chr4:87138487-87138506 | None:intergenic | 50.0% | |
| ! | ACCTCAGGAATGATGGAAGC+AGG | + | Chr4:87138445-87138464 | None:intergenic | 50.0% |
| ! | AGGAATGATGGAAGCAGGCA+AGG | + | Chr4:87138440-87138459 | None:intergenic | 50.0% |
| ! | GAATGATGGAAGCAGGCAAG+GGG | + | Chr4:87138438-87138457 | None:intergenic | 50.0% |
| ! | GGAATGATGGAAGCAGGCAA+GGG | + | Chr4:87138439-87138458 | None:intergenic | 50.0% |
| !!! | GAGGCACTTTTTCAGCTCCA+AGG | - | Chr4:87138957-87138976 | MsG0480023575.01.T01:intron | 50.0% |
| GCCTGCTTCCATCATTCCTG+AGG | - | Chr4:87138441-87138460 | MsG0480023575.01.T01:intron | 55.0% | |
| GGAGTGAGTAGATTGCCTCC+TGG | - | Chr4:87138347-87138366 | MsG0480023575.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 87138320 | 87139487 | 87138320 | ID=MsG0480023575.01;Name=MsG0480023575.01 |
| Chr4 | mRNA | 87138320 | 87139487 | 87138320 | ID=MsG0480023575.01.T01;Parent=MsG0480023575.01;Name=MsG0480023575.01.T01;_AED=0.26;_eAED=0.35;_QI=0|0|0|1|1|1|3|0|116 |
| Chr4 | exon | 87139308 | 87139487 | 87139308 | ID=MsG0480023575.01.T01:exon:6518;Parent=MsG0480023575.01.T01 |
| Chr4 | exon | 87138762 | 87138867 | 87138762 | ID=MsG0480023575.01.T01:exon:6517;Parent=MsG0480023575.01.T01 |
| Chr4 | exon | 87138320 | 87138384 | 87138320 | ID=MsG0480023575.01.T01:exon:6516;Parent=MsG0480023575.01.T01 |
| Chr4 | CDS | 87139308 | 87139487 | 87139308 | ID=MsG0480023575.01.T01:cds;Parent=MsG0480023575.01.T01 |
| Chr4 | CDS | 87138762 | 87138867 | 87138762 | ID=MsG0480023575.01.T01:cds;Parent=MsG0480023575.01.T01 |
| Chr4 | CDS | 87138320 | 87138384 | 87138320 | ID=MsG0480023575.01.T01:cds;Parent=MsG0480023575.01.T01 |
| Gene Sequence |
| Protein sequence |
